Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
GDAC_Correlate_Genomic_Events:pvalue.cutoff	1	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	table.1.txt	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	txt	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:pvalue.cutoff	1	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D2V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:pvalue.cutoff	1	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D2V4.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:pvalue.cutoff	1	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D1V4.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:pvalue.cutoff	1	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D1V3.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:pvalue.cutoff	1	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D3V8.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:pvalue.cutoff	1	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D2V9.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:pvalue.cutoff	1	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D3V4.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:pvalue.cutoff	1	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D1V3.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:pvalue.cutoff	1	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D2V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:pvalue.cutoff	1	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D3V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:pvalue.cutoff	1	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D1V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:pvalue.cutoff	1	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D2V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:pvalue.cutoff	1	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D3V8.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:pvalue.cutoff	1	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D2V9.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:pvalue.cutoff	1	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:pvalue.cutoff	1	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	READ-TP.sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	table.1.txt	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	txt	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	READ-TP.sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D2V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	READ-TP.sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D2V4.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	READ-TP.sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D1V4.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	READ-TP.sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D1V3.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	READ-TP.sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D3V8.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	READ-TP.sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D2V9.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	READ-TP.sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D3V4.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	READ-TP.sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D1V3.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	READ-TP.sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D2V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	READ-TP.sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D3V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	READ-TP.sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D1V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	READ-TP.sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D2V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	READ-TP.sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D3V8.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	READ-TP.sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D2V9.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	READ-TP.sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events_Preprocess:EventFile2Transform	READ-TP.sample_sig_gene_table.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	READ-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	table.1.txt	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	txt	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	READ-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D2V1.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	READ-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D2V4.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	READ-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D1V4.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	READ-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D1V3.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	READ-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D3V8.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	READ-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D2V9.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	READ-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D3V4.pdf	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	pdf	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	READ-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D1V3.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	READ-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D2V1.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	READ-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D3V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	READ-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D1V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	READ-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D2V4.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	READ-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D3V8.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	READ-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	D2V9.png	Correlation-Clinical_Genes_SignificantlyMutated	Level_4	png	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	READ-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	nozzle.html	report	Level_4	html	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
GDAC_Correlate_Genomic_Events:clinical.info.file	READ-TP.merged_data.txt	N/A	urn:lsid:broadinstitute.org:cancer.genome.analysis:10478:11	Correlate_Clinical_vs_Mutation_2014011500	nozzle.RData	report	Level_4	RData	gdac.broadinstitute.org_READ-TP.Correlate_Clinical_vs_Mutation.Level_4.2014011500.0.0	yes
