
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/READ-TP/6159763/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/READ-TP/6159710/READ-TP.transferedmergedcluster.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=READ-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=READ-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/READ-TP/6159710/READ-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/READ-TP/6159763/transformed.cor.cli.txt"

nPatients in clinical file=166, in cluster file=162, common to both=162
[1] "Reduce the number of clustering variables from 80 to 78."
[1]  78 162
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               12               150 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               12               150 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               32               130 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               32               130 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               39               123 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               39               123 
[1] "2Q GAIN MUTATION ANALYSIS"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               41               121 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               41               121 
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               27               135 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               27               135 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               34               128 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               34               128 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                9               153 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                9               153 
[1] "4Q GAIN MUTATION ANALYSIS"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                5               157 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                5               157 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               34               128 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               34               128 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               22               140 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               22               140 
[1] "6P GAIN MUTATION ANALYSIS"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               40               122 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               40               122 
[1] "6Q GAIN MUTATION ANALYSIS"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               35               127 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               35               127 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              100                62 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              100                62 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               83                79 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               83                79 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               39               123 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               39               123 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               88                74 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               88                74 
[1] "9P GAIN MUTATION ANALYSIS"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               42               120 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               42               120 
[1] "9Q GAIN MUTATION ANALYSIS"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               33               129 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               33               129 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                12                150 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                12                150 
[1] "10Q GAIN MUTATION ANALYSIS"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 6                156 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 6                156 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                30                132 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                30                132 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                25                137 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                25                137 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                33                129 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                33                129 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                23                139 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                23                139 
[1] "13Q GAIN MUTATION ANALYSIS"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
               110                 52 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
               110                 52 
[1] "14Q GAIN MUTATION ANALYSIS"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 8                154 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 8                154 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 3                159 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 3                159 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                39                123 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                39                123 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                39                123 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                39                123 
[1] "17P GAIN MUTATION ANALYSIS"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 8                154 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 8                154 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                30                132 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                30                132 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 8                154 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 8                154 
[1] "18Q GAIN MUTATION ANALYSIS"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 6                156 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 6                156 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                31                131 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                31                131 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                30                132 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                30                132 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               104                 58 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               104                 58 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               142                 20 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               142                 20 
[1] "21Q GAIN MUTATION ANALYSIS"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                10                152 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                10                152 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 9                153 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 9                153 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               32               130 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               32               130 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               44               118 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               44               118 
[1] "1Q LOSS MUTATION ANALYSIS"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               25               137 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               25               137 
[1] "2P LOSS MUTATION ANALYSIS"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               11               151 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               11               151 
[1] "2Q LOSS MUTATION ANALYSIS"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                6               156 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                6               156 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               15               147 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               15               147 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               10               152 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               10               152 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               58               104 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               58               104 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               65                97 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               65                97 
[1] "5P LOSS MUTATION ANALYSIS"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               26               136 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               26               136 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               40               122 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               40               122 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               13               149 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               13               149 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               22               140 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               22               140 
[1] "7Q LOSS MUTATION ANALYSIS"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                3               159 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                3               159 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               75                87 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               75                87 
[1] "8Q LOSS MUTATION ANALYSIS"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               11               151 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               11               151 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               22               140 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               22               140 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               22               140 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               22               140 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                32                130 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                32                130 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                37                125 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                37                125 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                24                138 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                24                138 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                30                132 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                30                132 
[1] "12P LOSS MUTATION ANALYSIS"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                22                140 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                22                140 
[1] "12Q LOSS MUTATION ANALYSIS"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                20                142 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                20                142 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                 8                154 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                 8                154 
[1] "14Q LOSS MUTATION ANALYSIS"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                65                 97 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                65                 97 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                72                 90 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                72                 90 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 9                153 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 9                153 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                14                148 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                14                148 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               104                 58 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               104                 58 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                25                137 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                25                137 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               125                 37 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               125                 37 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               135                 27 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               135                 27 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                22                140 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                22                140 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                21                141 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                21                141 
[1] "20P LOSS MUTATION ANALYSIS"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                25                137 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                25                137 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                66                 96 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                66                 96 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                57                105 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                57                105 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               25               137 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               25               137 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 162 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 162 columns, 0 survival variables, and 12 non-survival variables.
MRNA_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=6, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        1      3      1
  1P GAIN WILD-TYPE     24     19     21
D1V1, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               1                24
  CLUS_2               3                19
  CLUS_3               1                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        1      2      2
  1P GAIN WILD-TYPE     23     27     14
D1V2, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               1                23
  CLUS_2               2                27
  CLUS_3               2                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1P GAIN MUTATED        0      1      3      5      2      1
  1P GAIN WILD-TYPE     10     33     39     25     22     21
D1V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        2      2      4
  1P GAIN WILD-TYPE     22     37     26
D1V4, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               2                22
  CLUS_2               2                37
  CLUS_3               4                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        2      0      7
  1P GAIN WILD-TYPE     31     40     46
D1V5, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               2                31
  CLUS_2               0                40
  CLUS_3               7                46
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P GAIN MUTATED        2      2      0      0      5
  1P GAIN WILD-TYPE      4     15     32     26     40
D1V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        4      3      4
  1P GAIN WILD-TYPE     54     28     61
D1V7, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               4                54
  CLUS_2               3                28
  CLUS_3               4                61
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED        5      0      4      2
  1P GAIN WILD-TYPE     61      7     46     29
D1V8, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               5                61
  CLUS_2               0                 7
  CLUS_3               4                46
  CLUS_4               2                29
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P GAIN MUTATED        1      3      1      1      4
  1P GAIN WILD-TYPE     17     39     16      7     52
D1V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        1      5      4
  1P GAIN WILD-TYPE     18     58     55
D1V10, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               1                18
  CLUS_2               5                58
  CLUS_3               4                55
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED        0      2      2      1
  1P GAIN WILD-TYPE     11     20     21     17
D1V11, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               0                11
  CLUS_2               2                20
  CLUS_3               2                21
  CLUS_4               1                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P GAIN MUTATED        0      2      1      1      1
  1P GAIN WILD-TYPE      9     18     12      9     21
D1V12, multiclass

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        3      5      4
  1Q GAIN WILD-TYPE     22     17     18
D2V1, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               3                22
  CLUS_2               5                17
  CLUS_3               4                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        4      5      3
  1Q GAIN WILD-TYPE     20     24     13
D2V2, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               4                20
  CLUS_2               5                24
  CLUS_3               3                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1Q GAIN MUTATED        5      3      5     10      5      4
  1Q GAIN WILD-TYPE      5     31     37     20     19     18
D2V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        4      9      8
  1Q GAIN WILD-TYPE     20     30     22
D2V4, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               4                20
  CLUS_2               9                30
  CLUS_3               8                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        6      4     17
  1Q GAIN WILD-TYPE     27     36     36
D2V5, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               6                27
  CLUS_2               4                36
  CLUS_3              17                36
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q GAIN MUTATED        2      3      5      3     14
  1Q GAIN WILD-TYPE      4     14     27     23     31
D2V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       12      7     12
  1Q GAIN WILD-TYPE     46     24     53
D2V7, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              12                46
  CLUS_2               7                24
  CLUS_3              12                53
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED       12      1     11      7
  1Q GAIN WILD-TYPE     54      6     39     24
D2V8, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              12                54
  CLUS_2               1                 6
  CLUS_3              11                39
  CLUS_4               7                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q GAIN MUTATED        4      9      1      2      9
  1Q GAIN WILD-TYPE     14     33     16      6     47
D2V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        2     11     12
  1Q GAIN WILD-TYPE     17     52     47
D2V10, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               2                17
  CLUS_2              11                52
  CLUS_3              12                47
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED        0      5      7      2
  1Q GAIN WILD-TYPE     11     17     16     16
D2V11, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               0                11
  CLUS_2               5                17
  CLUS_3               7                16
  CLUS_4               2                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q GAIN MUTATED        0      5      1      2      6
  1Q GAIN WILD-TYPE      9     15     12      8     16
D2V12, multiclass

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        4      2      5
  2P GAIN WILD-TYPE     21     20     17
D3V1, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               4                21
  CLUS_2               2                20
  CLUS_3               5                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        4      6      1
  2P GAIN WILD-TYPE     20     23     15
D3V2, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               4                20
  CLUS_2               6                23
  CLUS_3               1                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2P GAIN MUTATED        4     14      5      7      5      4
  2P GAIN WILD-TYPE      6     20     37     23     19     18
D3V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       11     10      6
  2P GAIN WILD-TYPE     13     29     24
D3V4, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              11                13
  CLUS_2              10                29
  CLUS_3               6                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        8     13     13
  2P GAIN WILD-TYPE     25     27     40
D3V5, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               8                25
  CLUS_2              13                27
  CLUS_3              13                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P GAIN MUTATED        1      4     10      6     13
  2P GAIN WILD-TYPE      5     13     22     20     32
D3V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       20      5     11
  2P GAIN WILD-TYPE     38     26     54
D3V7, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              20                38
  CLUS_2               5                26
  CLUS_3              11                54
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED       11      1     18      6
  2P GAIN WILD-TYPE     55      6     32     25
D3V8, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              11                55
  CLUS_2               1                 6
  CLUS_3              18                32
  CLUS_4               6                25
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P GAIN MUTATED        6     12      5      3      8
  2P GAIN WILD-TYPE     12     30     12      5     48
D3V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        2     11     21
  2P GAIN WILD-TYPE     17     52     38
D3V10, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               2                17
  CLUS_2              11                52
  CLUS_3              21                38
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED        4      7      6      6
  2P GAIN WILD-TYPE      7     15     17     12
D3V11, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               4                 7
  CLUS_2               7                15
  CLUS_3               6                17
  CLUS_4               6                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P GAIN MUTATED        5      6      1      6      5
  2P GAIN WILD-TYPE      4     14     12      4     17
D3V12, multiclass

Clustering(4) Variable = 2Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        4      2      8
  2Q GAIN WILD-TYPE     21     20     14
D4V1, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               4                21
  CLUS_2               2                20
  CLUS_3               8                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        4      9      1
  2Q GAIN WILD-TYPE     20     20     15
D4V2, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               4                20
  CLUS_2               9                20
  CLUS_3               1                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2Q GAIN MUTATED        4     13      3      8      8      5
  2Q GAIN WILD-TYPE      6     21     39     22     16     17
D4V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       11      9      6
  2Q GAIN WILD-TYPE     13     30     24
D4V4, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              11                13
  CLUS_2               9                30
  CLUS_3               6                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        9     13     13
  2Q GAIN WILD-TYPE     24     27     40
D4V5, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               9                24
  CLUS_2              13                27
  CLUS_3              13                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q GAIN MUTATED        1      4     10      7     13
  2Q GAIN WILD-TYPE      5     13     22     19     32
D4V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       22      4     14
  2Q GAIN WILD-TYPE     36     27     51
D4V7, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              22                36
  CLUS_2               4                27
  CLUS_3              14                51
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED       14      1     20      5
  2Q GAIN WILD-TYPE     52      6     30     26
D4V8, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              14                52
  CLUS_2               1                 6
  CLUS_3              20                30
  CLUS_4               5                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q GAIN MUTATED        7      9      6      3     10
  2Q GAIN WILD-TYPE     11     33     11      5     46
D4V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        2     14     19
  2Q GAIN WILD-TYPE     17     49     40
D4V10, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               2                17
  CLUS_2              14                49
  CLUS_3              19                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED        4      7      4      6
  2Q GAIN WILD-TYPE      7     15     19     12
D4V11, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               4                 7
  CLUS_2               7                15
  CLUS_3               4                19
  CLUS_4               6                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q GAIN MUTATED        4      5      1      7      4
  2Q GAIN WILD-TYPE      5     15     12      3     18
D4V12, multiclass

Clustering(5) Variable = 3P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        3      2      3
  3P GAIN WILD-TYPE     22     20     19
D5V1, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               3                22
  CLUS_2               2                20
  CLUS_3               3                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        3      4      1
  3P GAIN WILD-TYPE     21     25     15
D5V2, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               3                21
  CLUS_2               4                25
  CLUS_3               1                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3P GAIN MUTATED        2      8      3      4      7      3
  3P GAIN WILD-TYPE      8     26     39     26     17     19
D5V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        6      6      7
  3P GAIN WILD-TYPE     18     33     23
D5V4, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               6                18
  CLUS_2               6                33
  CLUS_3               7                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        5      3     13
  3P GAIN WILD-TYPE     28     37     40
D5V5, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               5                28
  CLUS_2               3                37
  CLUS_3              13                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P GAIN MUTATED        0      4      2      5     10
  3P GAIN WILD-TYPE      6     13     30     21     35
D5V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED       11      6      8
  3P GAIN WILD-TYPE     47     25     57
D5V7, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              11                47
  CLUS_2               6                25
  CLUS_3               8                57
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED        9      0     10      6
  3P GAIN WILD-TYPE     57      7     40     25
D5V8, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               9                57
  CLUS_2               0                 7
  CLUS_3              10                40
  CLUS_4               6                25
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P GAIN MUTATED        4     11      2      2      7
  3P GAIN WILD-TYPE     14     31     15      6     49
D5V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        2      8     16
  3P GAIN WILD-TYPE     17     55     43
D5V10, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               2                17
  CLUS_2               8                55
  CLUS_3              16                43
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED        1      5      7      4
  3P GAIN WILD-TYPE     10     17     16     14
D5V11, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               1                10
  CLUS_2               5                17
  CLUS_3               7                16
  CLUS_4               4                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P GAIN MUTATED        2      5      1      2      7
  3P GAIN WILD-TYPE      7     15     12      8     15
D5V12, multiclass

Clustering(6) Variable = 3Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        5      2      4
  3Q GAIN WILD-TYPE     20     20     18
D6V1, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               5                20
  CLUS_2               2                20
  CLUS_3               4                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        4      5      2
  3Q GAIN WILD-TYPE     20     24     14
D6V2, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               4                20
  CLUS_2               5                24
  CLUS_3               2                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3Q GAIN MUTATED        2      9      3      6      9      5
  3Q GAIN WILD-TYPE      8     25     39     24     15     17
D6V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        6      9      8
  3Q GAIN WILD-TYPE     18     30     22
D6V4, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               6                18
  CLUS_2               9                30
  CLUS_3               8                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        7      5     14
  3Q GAIN WILD-TYPE     26     35     39
D6V5, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               7                26
  CLUS_2               5                35
  CLUS_3              14                39
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q GAIN MUTATED        0      5      2      7     12
  3Q GAIN WILD-TYPE      6     12     30     19     33
D6V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       15      6     11
  3Q GAIN WILD-TYPE     43     25     54
D6V7, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              15                43
  CLUS_2               6                25
  CLUS_3              11                54
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED       12      0     14      6
  3Q GAIN WILD-TYPE     54      7     36     25
D6V8, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              12                54
  CLUS_2               0                 7
  CLUS_3              14                36
  CLUS_4               6                25
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q GAIN MUTATED        5     13      2      3      9
  3Q GAIN WILD-TYPE     13     29     15      5     47
D6V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        3     11     18
  3Q GAIN WILD-TYPE     16     52     41
D6V10, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               3                16
  CLUS_2              11                52
  CLUS_3              18                41
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED        2      6      7      5
  3Q GAIN WILD-TYPE      9     16     16     13
D6V11, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               2                 9
  CLUS_2               6                16
  CLUS_3               7                16
  CLUS_4               5                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q GAIN MUTATED        3      5      2      3      7
  3Q GAIN WILD-TYPE      6     15     11      7     15
D6V12, multiclass

Clustering(7) Variable = 4P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        1      1      1
  4P GAIN WILD-TYPE     24     21     21
D7V1, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               1                24
  CLUS_2               1                21
  CLUS_3               1                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        0      1      2
  4P GAIN WILD-TYPE     24     28     14
D7V2, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               0                24
  CLUS_2               1                28
  CLUS_3               2                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4P GAIN MUTATED        0      2      3      2      1      1
  4P GAIN WILD-TYPE     10     32     39     28     23     21
D7V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        1      3      2
  4P GAIN WILD-TYPE     23     36     28
D7V4, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               1                23
  CLUS_2               3                36
  CLUS_3               2                28
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        0      5      3
  4P GAIN WILD-TYPE     33     35     50
D7V5, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               0                33
  CLUS_2               5                35
  CLUS_3               3                50
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P GAIN MUTATED        0      0      5      0      3
  4P GAIN WILD-TYPE      6     17     27     26     42
D7V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        3      2      2
  4P GAIN WILD-TYPE     55     29     63
D7V7, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               3                55
  CLUS_2               2                29
  CLUS_3               2                63
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        2      0      1      4
  4P GAIN WILD-TYPE     64      7     49     27
D7V8, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2                64
  CLUS_2               0                 7
  CLUS_3               1                49
  CLUS_4               4                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P GAIN MUTATED        0      6      0      0      3
  4P GAIN WILD-TYPE     18     36     17      8     53
D7V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        0      3      6
  4P GAIN WILD-TYPE     19     60     53
D7V10, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               0                19
  CLUS_2               3                60
  CLUS_3               6                53
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        2      1      2      1
  4P GAIN WILD-TYPE      9     21     21     17
D7V11, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2                 9
  CLUS_2               1                21
  CLUS_3               2                21
  CLUS_4               1                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P GAIN MUTATED        3      1      0      0      2
  4P GAIN WILD-TYPE      6     19     13     10     20
D7V12, multiclass

Clustering(8) Variable = 4Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        0      1      2
  4Q GAIN WILD-TYPE     25     21     20
D8V1, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               0                25
  CLUS_2               1                21
  CLUS_3               2                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        0      2      1
  4Q GAIN WILD-TYPE     24     27     15
D8V2, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               0                24
  CLUS_2               2                27
  CLUS_3               1                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4Q GAIN MUTATED        0      1      1      1      1      1
  4Q GAIN WILD-TYPE     10     33     41     29     23     21
D8V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        0      1      1
  4Q GAIN WILD-TYPE     24     38     29
D8V4, multiclass
[1] "Remove cluster labels:" "4Q GAIN MUTATED"       
clus
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                2                91 
       TCGA-AF-2687        TCGA-AF-2690        TCGA-AF-2693        TCGA-AF-3911 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6136        TCGA-AF-6655        TCGA-AF-6672 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AG-3591        TCGA-AG-3592        TCGA-AG-3725        TCGA-AG-3731 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AG-3732        TCGA-AG-3742        TCGA-AG-4021        TCGA-AG-4022 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A026 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6643 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AH-6644        TCGA-AH-6897        TCGA-AH-6903        TCGA-BM-6198 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621        TCGA-CI-6622 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CI-6623        TCGA-CI-6624        TCGA-CL-4957        TCGA-CL-5917 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CL-5918        TCGA-DC-4745        TCGA-DC-4749        TCGA-DC-5337 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6154        TCGA-DC-6155        TCGA-DC-6156 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6160        TCGA-DC-6681 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DC-6683        TCGA-DT-5265        TCGA-DY-A0XA        TCGA-DY-A1DC 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DE        TCGA-DY-A1DF        TCGA-DY-A1H8 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EF-5830        TCGA-EF-5831        TCGA-EI-6506        TCGA-EI-6507 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EI-6508        TCGA-EI-6509        TCGA-EI-6510        TCGA-EI-6511 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EI-6512        TCGA-EI-6513        TCGA-EI-6514        TCGA-EI-6881 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EI-6882        TCGA-EI-6883        TCGA-EI-6884        TCGA-EI-6885 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EI-6917        TCGA-EI-7002        TCGA-EI-7004        TCGA-F5-6464 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6810 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-F5-6813        TCGA-F5-6814 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F5-6861        TCGA-F5-6863        TCGA-F5-6864        TCGA-G5-6233 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-G5-6235        TCGA-G5-6572        TCGA-G5-6641 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        0      3      1
  4Q GAIN WILD-TYPE     33     37     52
D8V5, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               0                33
  CLUS_2               3                37
  CLUS_3               1                52
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q GAIN MUTATED        0      0      2      0      2
  4Q GAIN WILD-TYPE      6     17     30     26     43
D8V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        1      0      2
  4Q GAIN WILD-TYPE     57     31     63
D8V7, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               1                57
  CLUS_2               0                31
  CLUS_3               2                63
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED        2      0      1      0
  4Q GAIN WILD-TYPE     64      7     49     31
D8V8, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               2                64
  CLUS_2               0                 7
  CLUS_3               1                49
  CLUS_4               0                31
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q GAIN MUTATED        0      2      1      0      2
  4Q GAIN WILD-TYPE     18     40     16      8     54
D8V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        1      2      2
  4Q GAIN WILD-TYPE     18     61     57
D8V10, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               1                18
  CLUS_2               2                61
  CLUS_3               2                57
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED        1      0      0      1
  4Q GAIN WILD-TYPE     10     22     23     17
D8V11, multiclass
[1] "Remove cluster labels:" "4Q GAIN MUTATED"       
clus
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                2                72 
       TCGA-AF-2687        TCGA-AF-2690        TCGA-AF-2693        TCGA-AF-3911 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-5654        TCGA-AF-6136        TCGA-AF-6655 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AF-6672        TCGA-AG-3591        TCGA-AG-3592        TCGA-AG-3725 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AG-3742        TCGA-AG-4021 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AG-4022        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6643 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AH-6644        TCGA-BM-6198        TCGA-CI-6619        TCGA-CI-6620 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6622        TCGA-CI-6623        TCGA-CI-6624 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CL-4957        TCGA-CL-5917        TCGA-CL-5918        TCGA-DC-4745 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DC-4749        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6155 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DC-6156        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6160 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DC-6681        TCGA-DC-6683        TCGA-DT-5265        TCGA-DY-A0XA 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DE        TCGA-DY-A1DF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EF-5830        TCGA-EF-5831        TCGA-EI-6506 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EI-6507        TCGA-EI-6508        TCGA-EI-6509        TCGA-EI-6510 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EI-6511        TCGA-EI-6512        TCGA-EI-6513        TCGA-EI-6514 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F5-6810        TCGA-F5-6811        TCGA-F5-6812        TCGA-F5-6813 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-G5-6233        TCGA-G5-6235        TCGA-G5-6572        TCGA-G5-6641 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q GAIN MUTATED        1      0      0      0      1
  4Q GAIN WILD-TYPE      8     20     13     10     21
D8V12, multiclass
[1] "Remove cluster labels:" "4Q GAIN MUTATED"       
clus
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                2                72 
       TCGA-AF-2687        TCGA-AF-2690        TCGA-AF-2693        TCGA-AF-3911 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-5654        TCGA-AF-6136        TCGA-AF-6655 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AF-6672        TCGA-AG-3591        TCGA-AG-3592        TCGA-AG-3725 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AG-3742        TCGA-AG-4021 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AG-4022        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6643 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-AH-6644        TCGA-BM-6198        TCGA-CI-6619        TCGA-CI-6620 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6622        TCGA-CI-6623        TCGA-CI-6624 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CL-4957        TCGA-CL-5917        TCGA-CL-5918        TCGA-DC-4745 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DC-4749        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6155 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DC-6156        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6160 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DC-6681        TCGA-DC-6683        TCGA-DT-5265        TCGA-DY-A0XA 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DE        TCGA-DY-A1DF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EF-5830        TCGA-EF-5831        TCGA-EI-6506 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EI-6507        TCGA-EI-6508        TCGA-EI-6509        TCGA-EI-6510 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EI-6511        TCGA-EI-6512        TCGA-EI-6513        TCGA-EI-6514 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-F5-6810        TCGA-F5-6811        TCGA-F5-6812        TCGA-F5-6813 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-G5-6233        TCGA-G5-6235        TCGA-G5-6572        TCGA-G5-6641 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 

Clustering(9) Variable = 5P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        6      2      7
  5P GAIN WILD-TYPE     19     20     15
D9V1, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               6                19
  CLUS_2               2                20
  CLUS_3               7                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        5      8      2
  5P GAIN WILD-TYPE     19     21     14
D9V2, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               5                19
  CLUS_2               8                21
  CLUS_3               2                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5P GAIN MUTATED        0      9      3      8      8      6
  5P GAIN WILD-TYPE     10     25     39     22     16     16
D9V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        5      5     10
  5P GAIN WILD-TYPE     19     34     20
D9V4, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               5                19
  CLUS_2               5                34
  CLUS_3              10                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       11      8      9
  5P GAIN WILD-TYPE     22     32     44
D9V5, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              11                22
  CLUS_2               8                32
  CLUS_3               9                44
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P GAIN MUTATED        0      6      7      5     10
  5P GAIN WILD-TYPE      6     11     25     21     35
D9V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       17      2     15
  5P GAIN WILD-TYPE     41     29     50
D9V7, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              17                41
  CLUS_2               2                29
  CLUS_3              15                50
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED       15      1     16      2
  5P GAIN WILD-TYPE     51      6     34     29
D9V8, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              15                51
  CLUS_2               1                 6
  CLUS_3              16                34
  CLUS_4               2                29
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P GAIN MUTATED        5      9      2      4      9
  5P GAIN WILD-TYPE     13     33     15      4     47
D9V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        3     12     14
  5P GAIN WILD-TYPE     16     51     45
D9V10, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               3                16
  CLUS_2              12                51
  CLUS_3              14                45
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED        0      7      5      4
  5P GAIN WILD-TYPE     11     15     18     14
D9V11, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               0                11
  CLUS_2               7                15
  CLUS_3               5                18
  CLUS_4               4                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P GAIN MUTATED        1      6      1      3      5
  5P GAIN WILD-TYPE      8     14     12      7     17
D9V12, multiclass

Clustering(10) Variable = 5Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        4      1      5
  5Q GAIN WILD-TYPE     21     21     17
D10V1, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               4                21
  CLUS_2               1                21
  CLUS_3               5                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        3      6      1
  5Q GAIN WILD-TYPE     21     23     15
D10V2, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               3                21
  CLUS_2               6                23
  CLUS_3               1                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5Q GAIN MUTATED        0      7      3      4      4      4
  5Q GAIN WILD-TYPE     10     27     39     26     20     18
D10V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        2      2      8
  5Q GAIN WILD-TYPE     22     37     22
D10V4, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               2                22
  CLUS_2               2                37
  CLUS_3               8                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        7      6      3
  5Q GAIN WILD-TYPE     26     34     50
D10V5, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               7                26
  CLUS_2               6                34
  CLUS_3               3                50
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q GAIN MUTATED        0      3      5      4      4
  5Q GAIN WILD-TYPE      6     14     27     22     41
D10V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       11      1     10
  5Q GAIN WILD-TYPE     47     30     55
D10V7, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              11                47
  CLUS_2               1                30
  CLUS_3              10                55
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED       10      0     11      1
  5Q GAIN WILD-TYPE     56      7     39     30
D10V8, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              10                56
  CLUS_2               0                 7
  CLUS_3              11                39
  CLUS_4               1                30
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q GAIN MUTATED        3      6      0      2      6
  5Q GAIN WILD-TYPE     15     36     17      6     50
D10V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        1      8      8
  5Q GAIN WILD-TYPE     18     55     51
D10V10, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               1                18
  CLUS_2               8                55
  CLUS_3               8                51
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED        0      5      3      1
  5Q GAIN WILD-TYPE     11     17     20     17
D10V11, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               0                11
  CLUS_2               5                17
  CLUS_3               3                20
  CLUS_4               1                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q GAIN MUTATED        1      5      0      0      3
  5Q GAIN WILD-TYPE      8     15     13     10     19
D10V12, multiclass

Clustering(11) Variable = 6P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        3      6      6
  6P GAIN WILD-TYPE     22     16     16
D11V1, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               3                22
  CLUS_2               6                16
  CLUS_3               6                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        3      9      3
  6P GAIN WILD-TYPE     21     20     13
D11V2, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               3                21
  CLUS_2               9                20
  CLUS_3               3                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6P GAIN MUTATED        5     11      4      6     13      1
  6P GAIN WILD-TYPE      5     23     38     24     11     21
D11V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       13      6      6
  6P GAIN WILD-TYPE     11     33     24
D11V4, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              13                11
  CLUS_2               6                33
  CLUS_3               6                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        6     10     13
  6P GAIN WILD-TYPE     27     30     40
D11V5, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               6                27
  CLUS_2              10                30
  CLUS_3              13                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P GAIN MUTATED        0      2      9      8     10
  6P GAIN WILD-TYPE      6     15     23     18     35
D11V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       16      8     15
  6P GAIN WILD-TYPE     42     23     50
D11V7, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              16                42
  CLUS_2               8                23
  CLUS_3              15                50
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED       14      1     13     11
  6P GAIN WILD-TYPE     52      6     37     20
D11V8, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              14                52
  CLUS_2               1                 6
  CLUS_3              13                37
  CLUS_4              11                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P GAIN MUTATED        7     13      4      4     11
  6P GAIN WILD-TYPE     11     29     13      4     45
D11V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        6     15     18
  6P GAIN WILD-TYPE     13     48     41
D11V10, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               6                13
  CLUS_2              15                48
  CLUS_3              18                41
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED        2      9      9      4
  6P GAIN WILD-TYPE      9     13     14     14
D11V11, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               2                 9
  CLUS_2               9                13
  CLUS_3               9                14
  CLUS_4               4                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P GAIN MUTATED        2      5      6      3      8
  6P GAIN WILD-TYPE      7     15      7      7     14
D11V12, multiclass

Clustering(12) Variable = 6Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        3      4      5
  6Q GAIN WILD-TYPE     22     18     17
D12V1, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               3                22
  CLUS_2               4                18
  CLUS_3               5                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        3      8      1
  6Q GAIN WILD-TYPE     21     21     15
D12V2, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               3                21
  CLUS_2               8                21
  CLUS_3               1                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6Q GAIN MUTATED        4     12      3      3     12      1
  6Q GAIN WILD-TYPE      6     22     39     27     12     21
D12V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED       11      6      6
  6Q GAIN WILD-TYPE     13     33     24
D12V4, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              11                13
  CLUS_2               6                33
  CLUS_3               6                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        5      8     11
  6Q GAIN WILD-TYPE     28     32     42
D12V5, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               5                28
  CLUS_2               8                32
  CLUS_3              11                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q GAIN MUTATED        0      2      7      7      8
  6Q GAIN WILD-TYPE      6     15     25     19     37
D12V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED       15      7     12
  6Q GAIN WILD-TYPE     43     24     53
D12V7, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              15                43
  CLUS_2               7                24
  CLUS_3              12                53
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED       11      1     12     10
  6Q GAIN WILD-TYPE     55      6     38     21
D12V8, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              11                55
  CLUS_2               1                 6
  CLUS_3              12                38
  CLUS_4              10                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q GAIN MUTATED        6     12      4      3      9
  6Q GAIN WILD-TYPE     12     30     13      5     47
D12V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        5     12     17
  6Q GAIN WILD-TYPE     14     51     42
D12V10, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               5                14
  CLUS_2              12                51
  CLUS_3              17                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED        2      8      7      5
  6Q GAIN WILD-TYPE      9     14     16     13
D12V11, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               2                 9
  CLUS_2               8                14
  CLUS_3               7                16
  CLUS_4               5                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q GAIN MUTATED        2      4      5      3      8
  6Q GAIN WILD-TYPE      7     16      8      7     14
D12V12, multiclass

Clustering(13) Variable = 7P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED        8     11     18
  7P GAIN WILD-TYPE     17     11      4
D13V1, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               8                17
  CLUS_2              11                11
  CLUS_3              18                 4
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED        8     22      7
  7P GAIN WILD-TYPE     16      7      9
D13V2, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               8                16
  CLUS_2              22                 7
  CLUS_3               7                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7P GAIN MUTATED        7     31     16     12     18     16
  7P GAIN WILD-TYPE      3      3     26     18      6      6
D13V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       22     20     21
  7P GAIN WILD-TYPE      2     19      9
D13V4, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              22                 2
  CLUS_2              20                19
  CLUS_3              21                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       24     24     33
  7P GAIN WILD-TYPE      9     16     20
D13V5, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              24                 9
  CLUS_2              24                16
  CLUS_3              33                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P GAIN MUTATED        3     11     18     18     31
  7P GAIN WILD-TYPE      3      6     14      8     14
D13V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       46     17     34
  7P GAIN WILD-TYPE     12     14     31
D13V7, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              46                12
  CLUS_2              17                14
  CLUS_3              34                31
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED       37      1     42     17
  7P GAIN WILD-TYPE     29      6      8     14
D13V8, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              37                29
  CLUS_2               1                 6
  CLUS_3              42                 8
  CLUS_4              17                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P GAIN MUTATED       16     28     10      5     28
  7P GAIN WILD-TYPE      2     14      7      3     28
D13V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       15     31     41
  7P GAIN WILD-TYPE      4     32     18
D13V10, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              15                 4
  CLUS_2              31                32
  CLUS_3              41                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED        4     19     17     13
  7P GAIN WILD-TYPE      7      3      6      5
D13V11, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               4                 7
  CLUS_2              19                 3
  CLUS_3              17                 6
  CLUS_4              13                 5
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P GAIN MUTATED        3     17      9      8     16
  7P GAIN WILD-TYPE      6      3      4      2      6
D13V12, multiclass

Clustering(14) Variable = 7Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED        8     10     15
  7Q GAIN WILD-TYPE     17     12      7
D14V1, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               8                17
  CLUS_2              10                12
  CLUS_3              15                 7
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED        8     19      6
  7Q GAIN WILD-TYPE     16     10     10
D14V2, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               8                16
  CLUS_2              19                10
  CLUS_3               6                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7Q GAIN MUTATED        4     25     13      9     18     14
  7Q GAIN WILD-TYPE      6      9     29     21      6      8
D14V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       16     17     16
  7Q GAIN WILD-TYPE      8     22     14
D14V4, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              16                 8
  CLUS_2              17                22
  CLUS_3              16                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       19     22     25
  7Q GAIN WILD-TYPE     14     18     28
D14V5, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              19                14
  CLUS_2              22                18
  CLUS_3              25                28
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q GAIN MUTATED        3     10     16     15     22
  7Q GAIN WILD-TYPE      3      7     16     11     23
D14V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       37     13     30
  7Q GAIN WILD-TYPE     21     18     35
D14V7, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              37                21
  CLUS_2              13                18
  CLUS_3              30                35
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED       33      1     33     13
  7Q GAIN WILD-TYPE     33      6     17     18
D14V8, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              33                33
  CLUS_2               1                 6
  CLUS_3              33                17
  CLUS_4              13                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q GAIN MUTATED       12     24      8      4     25
  7Q GAIN WILD-TYPE      6     18      9      4     31
D14V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       11     29     33
  7Q GAIN WILD-TYPE      8     34     26
D14V10, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              11                 8
  CLUS_2              29                34
  CLUS_3              33                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED        4     15     14     10
  7Q GAIN WILD-TYPE      7      7      9      8
D14V11, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               4                 7
  CLUS_2              15                 7
  CLUS_3              14                 9
  CLUS_4              10                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q GAIN MUTATED        3     13      7      7     13
  7Q GAIN WILD-TYPE      6      7      6      3      9
D14V12, multiclass

Clustering(15) Variable = 8P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        3      5      5
  8P GAIN WILD-TYPE     22     17     17
D15V1, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               3                22
  CLUS_2               5                17
  CLUS_3               5                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        3      8      2
  8P GAIN WILD-TYPE     21     21     14
D15V2, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               3                21
  CLUS_2               8                21
  CLUS_3               2                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8P GAIN MUTATED        3      7      4      9      5     11
  8P GAIN WILD-TYPE      7     27     38     21     19     11
D15V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        8      9      9
  8P GAIN WILD-TYPE     16     30     21
D15V4, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               8                16
  CLUS_2               9                30
  CLUS_3               9                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        9     14     11
  8P GAIN WILD-TYPE     24     26     42
D15V5, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               9                24
  CLUS_2              14                26
  CLUS_3              11                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P GAIN MUTATED        3      4     12      6      9
  8P GAIN WILD-TYPE      3     13     20     20     36
D15V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       20      3     14
  8P GAIN WILD-TYPE     38     28     51
D15V7, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              20                38
  CLUS_2               3                28
  CLUS_3              14                51
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED       12      2     18      5
  8P GAIN WILD-TYPE     54      5     32     26
D15V8, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              12                54
  CLUS_2               2                 5
  CLUS_3              18                32
  CLUS_4               5                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P GAIN MUTATED        4     12      5      3     12
  8P GAIN WILD-TYPE     14     30     12      5     44
D15V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        8     13     15
  8P GAIN WILD-TYPE     11     50     44
D15V10, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               8                11
  CLUS_2              13                50
  CLUS_3              15                44
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED        5      9      5      3
  8P GAIN WILD-TYPE      6     13     18     15
D15V11, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               5                 6
  CLUS_2               9                13
  CLUS_3               5                18
  CLUS_4               3                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P GAIN MUTATED        2      5      5      4      6
  8P GAIN WILD-TYPE      7     15      8      6     16
D15V12, multiclass

Clustering(16) Variable = 8Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        8     10     17
  8Q GAIN WILD-TYPE     17     12      5
D16V1, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               8                17
  CLUS_2              10                12
  CLUS_3              17                 5
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        9     20      6
  8Q GAIN WILD-TYPE     15      9     10
D16V2, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               9                15
  CLUS_2              20                 9
  CLUS_3               6                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8Q GAIN MUTATED        6     21     12     17     11     21
  8Q GAIN WILD-TYPE      4     13     30     13     13      1
D16V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       19     20     15
  8Q GAIN WILD-TYPE      5     19     15
D16V4, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              19                 5
  CLUS_2              20                19
  CLUS_3              15                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       19     26     28
  8Q GAIN WILD-TYPE     14     14     25
D16V5, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              19                14
  CLUS_2              26                14
  CLUS_3              28                25
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q GAIN MUTATED        4      9     21     14     25
  8Q GAIN WILD-TYPE      2      8     11     12     20
D16V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       37     12     35
  8Q GAIN WILD-TYPE     21     19     30
D16V7, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              37                21
  CLUS_2              12                19
  CLUS_3              35                30
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED       32      3     34     15
  8Q GAIN WILD-TYPE     34      4     16     16
D16V8, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              32                34
  CLUS_2               3                 4
  CLUS_3              34                16
  CLUS_4              15                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q GAIN MUTATED       10     29      7      4     28
  8Q GAIN WILD-TYPE      8     13     10      4     28
D16V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       14     30     34
  8Q GAIN WILD-TYPE      5     33     25
D16V10, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              14                 5
  CLUS_2              30                33
  CLUS_3              34                25
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED        7     15     13     11
  8Q GAIN WILD-TYPE      4      7     10      7
D16V11, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               7                 4
  CLUS_2              15                 7
  CLUS_3              13                10
  CLUS_4              11                 7
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q GAIN MUTATED        3     12     10      7     14
  8Q GAIN WILD-TYPE      6      8      3      3      8
D16V12, multiclass

Clustering(17) Variable = 9P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        2     10      6
  9P GAIN WILD-TYPE     23     12     16
D17V1, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               2                23
  CLUS_2              10                12
  CLUS_3               6                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        3      9      6
  9P GAIN WILD-TYPE     21     20     10
D17V2, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               3                21
  CLUS_2               9                20
  CLUS_3               6                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9P GAIN MUTATED        3      7      9     10      5      8
  9P GAIN WILD-TYPE      7     27     33     20     19     14
D17V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        6      7     11
  9P GAIN WILD-TYPE     18     32     19
D17V4, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               6                18
  CLUS_2               7                32
  CLUS_3              11                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED       10      9     16
  9P GAIN WILD-TYPE     23     31     37
D17V5, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              10                23
  CLUS_2               9                31
  CLUS_3              16                37
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P GAIN MUTATED        1      6      5     10     13
  9P GAIN WILD-TYPE      5     11     27     16     32
D17V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED       15      6     17
  9P GAIN WILD-TYPE     43     25     48
D17V7, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              15                43
  CLUS_2               6                25
  CLUS_3              17                48
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED       16      2     15      5
  9P GAIN WILD-TYPE     50      5     35     26
D17V8, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              16                50
  CLUS_2               2                 5
  CLUS_3              15                35
  CLUS_4               5                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P GAIN MUTATED        7      8      2      3     15
  9P GAIN WILD-TYPE     11     34     15      5     41
D17V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        5     17     13
  9P GAIN WILD-TYPE     14     46     46
D17V10, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               5                14
  CLUS_2              17                46
  CLUS_3              13                46
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED        0      7      7      3
  9P GAIN WILD-TYPE     11     15     16     15
D17V11, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               0                11
  CLUS_2               7                15
  CLUS_3               7                16
  CLUS_4               3                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P GAIN MUTATED        0      6      3      2      6
  9P GAIN WILD-TYPE      9     14     10      8     16
D17V12, multiclass

Clustering(18) Variable = 9Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        1      8      5
  9Q GAIN WILD-TYPE     24     14     17
D18V1, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               1                24
  CLUS_2               8                14
  CLUS_3               5                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        2      7      5
  9Q GAIN WILD-TYPE     22     22     11
D18V2, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               2                22
  CLUS_2               7                22
  CLUS_3               5                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9Q GAIN MUTATED        3      4      8      6      4      8
  9Q GAIN WILD-TYPE      7     30     34     24     20     14
D18V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        5      6      8
  9Q GAIN WILD-TYPE     19     33     22
D18V4, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               5                19
  CLUS_2               6                33
  CLUS_3               8                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        7      7     14
  9Q GAIN WILD-TYPE     26     33     39
D18V5, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               7                26
  CLUS_2               7                33
  CLUS_3              14                39
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q GAIN MUTATED        1      4      3      8     12
  9Q GAIN WILD-TYPE      5     13     29     18     33
D18V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       11      6     12
  9Q GAIN WILD-TYPE     47     25     53
D18V7, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              11                47
  CLUS_2               6                25
  CLUS_3              12                53
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED       11      2     11      5
  9Q GAIN WILD-TYPE     55      5     39     26
D18V8, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              11                55
  CLUS_2               2                 5
  CLUS_3              11                39
  CLUS_4               5                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q GAIN MUTATED        5      7      2      1     12
  9Q GAIN WILD-TYPE     13     35     15      7     44
D18V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        2     13     12
  9Q GAIN WILD-TYPE     17     50     47
D18V10, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               2                17
  CLUS_2              13                50
  CLUS_3              12                47
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED        0      5      6      3
  9Q GAIN WILD-TYPE     11     17     17     15
D18V11, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               0                11
  CLUS_2               5                17
  CLUS_3               6                17
  CLUS_4               3                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q GAIN MUTATED        0      5      2      2      5
  9Q GAIN WILD-TYPE      9     15     11      8     17
D18V12, multiclass

Clustering(19) Variable = 10P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        2      2      2
  10P GAIN WILD-TYPE     23     20     20
D19V1, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                2                 23
  CLUS_2                2                 20
  CLUS_3                2                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        3      2      1
  10P GAIN WILD-TYPE     21     27     15
D19V2, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                2                 27
  CLUS_3                1                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10P GAIN MUTATED        1      4      0      2      3      2
  10P GAIN WILD-TYPE      9     30     42     28     21     20
D19V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        0      4      2
  10P GAIN WILD-TYPE     24     35     28
D19V4, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                0                 24
  CLUS_2                4                 35
  CLUS_3                2                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        2      5      4
  10P GAIN WILD-TYPE     31     35     49
D19V5, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                2                 31
  CLUS_2                5                 35
  CLUS_3                4                 49
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P GAIN MUTATED        1      1      4      1      4
  10P GAIN WILD-TYPE      5     16     28     25     41
D19V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        4      0      5
  10P GAIN WILD-TYPE     54     31     60
D19V7, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                4                 54
  CLUS_2                0                 31
  CLUS_3                5                 60
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        5      1      3      0
  10P GAIN WILD-TYPE     61      6     47     31
D19V8, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                5                 61
  CLUS_2                1                  6
  CLUS_3                3                 47
  CLUS_4                0                 31
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P GAIN MUTATED        2      3      0      0      6
  10P GAIN WILD-TYPE     16     39     17      8     50
D19V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        1      5      5
  10P GAIN WILD-TYPE     18     58     54
D19V10, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                5                 58
  CLUS_3                5                 54
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        0      3      2      0
  10P GAIN WILD-TYPE     11     19     21     18
D19V11, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                3                 19
  CLUS_3                2                 21
  CLUS_4                0                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P GAIN MUTATED        0      4      0      0      1
  10P GAIN WILD-TYPE      9     16     13     10     21
D19V12, multiclass

Clustering(20) Variable = 10Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        1      0      2
  10Q GAIN WILD-TYPE     24     22     20
D20V1, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                1                 24
  CLUS_2                0                 22
  CLUS_3                2                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        1      2      0
  10Q GAIN WILD-TYPE     23     27     16
D20V2, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                1                 23
  CLUS_2                2                 27
  CLUS_3                0                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10Q GAIN MUTATED        0      3      0      2      1      0
  10Q GAIN WILD-TYPE     10     31     42     28     23     22
D20V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        0      2      1
  10Q GAIN WILD-TYPE     24     37     29
D20V4, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                0                 24
  CLUS_2                2                 37
  CLUS_3                1                 29
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        1      2      2
  10Q GAIN WILD-TYPE     32     38     51
D20V5, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                2                 38
  CLUS_3                2                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q GAIN MUTATED        0      0      2      1      2
  10Q GAIN WILD-TYPE      6     17     30     25     43
D20V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        1      0      3
  10Q GAIN WILD-TYPE     57     31     62
D20V7, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                1                 57
  CLUS_2                0                 31
  CLUS_3                3                 62
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        3      1      0      0
  10Q GAIN WILD-TYPE     63      6     50     31
D20V8, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                3                 63
  CLUS_2                1                  6
  CLUS_3                0                 50
  CLUS_4                0                 31
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q GAIN MUTATED        0      2      0      0      4
  10Q GAIN WILD-TYPE     18     40     17      8     52
D20V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        1      3      2
  10Q GAIN WILD-TYPE     18     60     57
D20V10, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                3                 60
  CLUS_3                2                 57
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        0      0      2      0
  10Q GAIN WILD-TYPE     11     22     21     18
D20V11, multiclass
[1] "Remove cluster labels:" "10Q GAIN MUTATED"      
clus
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 2                 72 
        TCGA-AF-2687         TCGA-AF-2690         TCGA-AF-2693 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AF-3911         TCGA-AF-4110         TCGA-AF-5654 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AF-6136         TCGA-AF-6655         TCGA-AF-6672 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AG-3591         TCGA-AG-3592         TCGA-AG-3725 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AG-3742 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AG-4021         TCGA-AG-4022         TCGA-AH-6544 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6643         TCGA-AH-6644 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CI-6622         TCGA-CI-6623         TCGA-CI-6624 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CL-4957         TCGA-CL-5917         TCGA-CL-5918 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DC-4749         TCGA-DC-5337         TCGA-DC-5869 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DC-6155         TCGA-DC-6156         TCGA-DC-6157 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DC-6158         TCGA-DC-6160         TCGA-DC-6681 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DC-6682         TCGA-DC-6683         TCGA-DT-5265 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DY-A0XA         TCGA-DY-A1DC         TCGA-DY-A1DD 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DY-A1DE         TCGA-DY-A1DF         TCGA-DY-A1DG 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DY-A1H8         TCGA-EF-5830         TCGA-EF-5831 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-EI-6508 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EI-6509         TCGA-EI-6510         TCGA-EI-6511 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EI-6512         TCGA-EI-6513         TCGA-EI-6514 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F5-6464         TCGA-F5-6465         TCGA-F5-6571 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F5-6702         TCGA-F5-6810         TCGA-F5-6811 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F5-6812         TCGA-F5-6813         TCGA-G5-6233 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G5-6235         TCGA-G5-6572         TCGA-G5-6641 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q GAIN MUTATED        0      1      0      0      1
  10Q GAIN WILD-TYPE      9     19     13     10     21
D20V12, multiclass
[1] "Remove cluster labels:" "10Q GAIN MUTATED"      
clus
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 2                 72 
        TCGA-AF-2687         TCGA-AF-2690         TCGA-AF-2693 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AF-3911         TCGA-AF-4110         TCGA-AF-5654 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AF-6136         TCGA-AF-6655         TCGA-AF-6672 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AG-3591         TCGA-AG-3592         TCGA-AG-3725 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AG-3742 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AG-4021         TCGA-AG-4022         TCGA-AH-6544 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6643         TCGA-AH-6644 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CI-6622         TCGA-CI-6623         TCGA-CI-6624 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CL-4957         TCGA-CL-5917         TCGA-CL-5918 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DC-4749         TCGA-DC-5337         TCGA-DC-5869 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DC-6155         TCGA-DC-6156         TCGA-DC-6157 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DC-6158         TCGA-DC-6160         TCGA-DC-6681 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DC-6682         TCGA-DC-6683         TCGA-DT-5265 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DY-A0XA         TCGA-DY-A1DC         TCGA-DY-A1DD 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DY-A1DE         TCGA-DY-A1DF         TCGA-DY-A1DG 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DY-A1H8         TCGA-EF-5830         TCGA-EF-5831 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-EI-6508 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EI-6509         TCGA-EI-6510         TCGA-EI-6511 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EI-6512         TCGA-EI-6513         TCGA-EI-6514 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F5-6464         TCGA-F5-6465         TCGA-F5-6571 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F5-6702         TCGA-F5-6810         TCGA-F5-6811 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-F5-6812         TCGA-F5-6813         TCGA-G5-6233 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G5-6235         TCGA-G5-6572         TCGA-G5-6641 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 

Clustering(21) Variable = 11P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        1      4      5
  11P GAIN WILD-TYPE     24     18     17
D21V1, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                1                 24
  CLUS_2                4                 18
  CLUS_3                5                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        1      6      3
  11P GAIN WILD-TYPE     23     23     13
D21V2, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                1                 23
  CLUS_2                6                 23
  CLUS_3                3                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11P GAIN MUTATED        3     12      3      7      2      3
  11P GAIN WILD-TYPE      7     22     39     23     22     19
D21V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        8      6      6
  11P GAIN WILD-TYPE     16     33     24
D21V4, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                8                 16
  CLUS_2                6                 33
  CLUS_3                6                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        5      8     11
  11P GAIN WILD-TYPE     28     32     42
D21V5, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                5                 28
  CLUS_2                8                 32
  CLUS_3               11                 42
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P GAIN MUTATED        0      2      6      5     11
  11P GAIN WILD-TYPE      6     15     26     21     34
D21V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED       15      6      9
  11P GAIN WILD-TYPE     43     25     56
D21V7, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               15                 43
  CLUS_2                6                 25
  CLUS_3                9                 56
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        9      2     12      7
  11P GAIN WILD-TYPE     57      5     38     24
D21V8, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                9                 57
  CLUS_2                2                  5
  CLUS_3               12                 38
  CLUS_4                7                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P GAIN MUTATED        3     11      3      4      5
  11P GAIN WILD-TYPE     15     31     14      4     51
D21V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        3      8     15
  11P GAIN WILD-TYPE     16     55     44
D21V10, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                3                 16
  CLUS_2                8                 55
  CLUS_3               15                 44
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        0      4      7      6
  11P GAIN WILD-TYPE     11     18     16     12
D21V11, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                4                 18
  CLUS_3                7                 16
  CLUS_4                6                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P GAIN MUTATED        2      3      2      2      8
  11P GAIN WILD-TYPE      7     17     11      8     14
D21V12, multiclass

Clustering(22) Variable = 11Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        1      4      4
  11Q GAIN WILD-TYPE     24     18     18
D22V1, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                1                 24
  CLUS_2                4                 18
  CLUS_3                4                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        1      6      2
  11Q GAIN WILD-TYPE     23     23     14
D22V2, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                1                 23
  CLUS_2                6                 23
  CLUS_3                2                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11Q GAIN MUTATED        4     12      3      2      3      1
  11Q GAIN WILD-TYPE      6     22     39     28     21     21
D22V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        9      4      3
  11Q GAIN WILD-TYPE     15     35     27
D22V4, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                9                 15
  CLUS_2                4                 35
  CLUS_3                3                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        6      4      9
  11Q GAIN WILD-TYPE     27     36     44
D22V5, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                6                 27
  CLUS_2                4                 36
  CLUS_3                9                 44
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q GAIN MUTATED        0      2      3      4     10
  11Q GAIN WILD-TYPE      6     15     29     22     35
D22V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED       14      2      9
  11Q GAIN WILD-TYPE     44     29     56
D22V7, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               14                 44
  CLUS_2                2                 29
  CLUS_3                9                 56
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        8      1     12      4
  11Q GAIN WILD-TYPE     58      6     38     27
D22V8, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                8                 58
  CLUS_2                1                  6
  CLUS_3               12                 38
  CLUS_4                4                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q GAIN MUTATED        4      6      3      4      4
  11Q GAIN WILD-TYPE     14     36     14      4     52
D22V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        3      7     11
  11Q GAIN WILD-TYPE     16     56     48
D22V10, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                3                 16
  CLUS_2                7                 56
  CLUS_3               11                 48
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        0      5      3      5
  11Q GAIN WILD-TYPE     11     17     20     13
D22V11, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                5                 17
  CLUS_3                3                 20
  CLUS_4                5                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q GAIN MUTATED        1      4      2      2      4
  11Q GAIN WILD-TYPE      8     16     11      8     18
D22V12, multiclass

Clustering(23) Variable = 12P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        5      7      5
  12P GAIN WILD-TYPE     20     15     17
D23V1, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                5                 20
  CLUS_2                7                 15
  CLUS_3                5                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        6      7      4
  12P GAIN WILD-TYPE     18     22     12
D23V2, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                6                 18
  CLUS_2                7                 22
  CLUS_3                4                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12P GAIN MUTATED        1      5      5     15      3      4
  12P GAIN WILD-TYPE      9     29     37     15     21     18
D23V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        4      5      6
  12P GAIN WILD-TYPE     20     34     24
D23V4, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                5                 34
  CLUS_3                6                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       10      5     11
  12P GAIN WILD-TYPE     23     35     42
D23V5, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               10                 23
  CLUS_2                5                 35
  CLUS_3               11                 42
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P GAIN MUTATED        0      4      2      8     12
  12P GAIN WILD-TYPE      6     13     30     18     33
D23V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       11      5     17
  12P GAIN WILD-TYPE     47     26     48
D23V7, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               11                 47
  CLUS_2                5                 26
  CLUS_3               17                 48
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED       16      3     10      4
  12P GAIN WILD-TYPE     50      4     40     27
D23V8, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               16                 50
  CLUS_2                3                  4
  CLUS_3               10                 40
  CLUS_4                4                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P GAIN MUTATED        2      8      2      3     15
  12P GAIN WILD-TYPE     16     34     15      5     41
D23V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        2     16     12
  12P GAIN WILD-TYPE     17     47     47
D23V10, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                2                 17
  CLUS_2               16                 47
  CLUS_3               12                 47
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED        4      3      4      2
  12P GAIN WILD-TYPE      7     19     19     16
D23V11, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                4                  7
  CLUS_2                3                 19
  CLUS_3                4                 19
  CLUS_4                2                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P GAIN MUTATED        3      3      1      1      5
  12P GAIN WILD-TYPE      6     17     12      9     17
D23V12, multiclass

Clustering(24) Variable = 12Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        3      4      3
  12Q GAIN WILD-TYPE     22     18     19
D24V1, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                3                 22
  CLUS_2                4                 18
  CLUS_3                3                 19
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        3      6      1
  12Q GAIN WILD-TYPE     21     23     15
D24V2, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                6                 23
  CLUS_3                1                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12Q GAIN MUTATED        1      4      4     10      2      2
  12Q GAIN WILD-TYPE      9     30     38     20     22     20
D24V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        3      3      6
  12Q GAIN WILD-TYPE     21     36     24
D24V4, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                3                 36
  CLUS_3                6                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        7      4     10
  12Q GAIN WILD-TYPE     26     36     43
D24V5, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                7                 26
  CLUS_2                4                 36
  CLUS_3               10                 43
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q GAIN MUTATED        0      3      1      6     11
  12Q GAIN WILD-TYPE      6     14     31     20     34
D24V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        8      4     11
  12Q GAIN WILD-TYPE     50     27     54
D24V7, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                8                 50
  CLUS_2                4                 27
  CLUS_3               11                 54
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED        9      3      7      4
  12Q GAIN WILD-TYPE     57      4     43     27
D24V8, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                9                 57
  CLUS_2                3                  4
  CLUS_3                7                 43
  CLUS_4                4                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q GAIN MUTATED        0      7      2      1     11
  12Q GAIN WILD-TYPE     18     35     15      7     45
D24V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        1     11      9
  12Q GAIN WILD-TYPE     18     52     50
D24V10, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                1                 18
  CLUS_2               11                 52
  CLUS_3                9                 50
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED        4      1      4      1
  12Q GAIN WILD-TYPE      7     21     19     17
D24V11, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                4                  7
  CLUS_2                1                 21
  CLUS_3                4                 19
  CLUS_4                1                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q GAIN MUTATED        3      1      1      0      5
  12Q GAIN WILD-TYPE      6     19     12     10     17
D24V12, multiclass

Clustering(25) Variable = 13Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED       16     11     16
  13Q GAIN WILD-TYPE      9     11      6
D25V1, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               16                  9
  CLUS_2               11                 11
  CLUS_3               16                  6
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED       16     18      9
  13Q GAIN WILD-TYPE      8     11      7
D25V2, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               16                  8
  CLUS_2               18                 11
  CLUS_3                9                  7
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  13Q GAIN MUTATED        8     28     18     17     22     17
  13Q GAIN WILD-TYPE      2      6     24     13      2      5
D25V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED       20     30     18
  13Q GAIN WILD-TYPE      4      9     12
D25V4, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               20                  4
  CLUS_2               30                  9
  CLUS_3               18                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED       21     28     35
  13Q GAIN WILD-TYPE     12     12     18
D25V5, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               21                 12
  CLUS_2               28                 12
  CLUS_3               35                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q GAIN MUTATED        2      9     24     17     32
  13Q GAIN WILD-TYPE      4      8      8      9     13
D25V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED       42     22     40
  13Q GAIN WILD-TYPE     16      9     25
D25V7, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               42                 16
  CLUS_2               22                  9
  CLUS_3               40                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED       42      0     38     24
  13Q GAIN WILD-TYPE     24      7     12      7
D25V8, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               42                 24
  CLUS_2                0                  7
  CLUS_3               38                 12
  CLUS_4               24                  7
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q GAIN MUTATED       15     37      9      6     32
  13Q GAIN WILD-TYPE      3      5      8      2     24
D25V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED       13     38     48
  13Q GAIN WILD-TYPE      6     25     11
D25V10, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               13                  6
  CLUS_2               38                 25
  CLUS_3               48                 11
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        7     19     20     12
  13Q GAIN WILD-TYPE      4      3      3      6
D25V11, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                7                  4
  CLUS_2               19                  3
  CLUS_3               20                  3
  CLUS_4               12                  6
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q GAIN MUTATED        8     16      8      7     19
  13Q GAIN WILD-TYPE      1      4      5      3      3
D25V12, multiclass

Clustering(26) Variable = 14Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        1      1      2
  14Q GAIN WILD-TYPE     24     21     20
D26V1, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                1                 24
  CLUS_2                1                 21
  CLUS_3                2                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        2      1      1
  14Q GAIN WILD-TYPE     22     28     15
D26V2, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                2                 22
  CLUS_2                1                 28
  CLUS_3                1                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  14Q GAIN MUTATED        1      1      0      2      3      1
  14Q GAIN WILD-TYPE      9     33     42     28     21     21
D26V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        2      1      1
  14Q GAIN WILD-TYPE     22     38     29
D26V4, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                2                 22
  CLUS_2                1                 38
  CLUS_3                1                 29
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        0      2      3
  14Q GAIN WILD-TYPE     33     38     50
D26V5, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                0                 33
  CLUS_2                2                 38
  CLUS_3                3                 50
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q GAIN MUTATED        0      0      2      0      3
  14Q GAIN WILD-TYPE      6     17     30     26     42
D26V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        1      3      4
  14Q GAIN WILD-TYPE     57     28     61
D26V7, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                1                 57
  CLUS_2                3                 28
  CLUS_3                4                 61
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED        5      0      1      2
  14Q GAIN WILD-TYPE     61      7     49     29
D26V8, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                5                 61
  CLUS_2                0                  7
  CLUS_3                1                 49
  CLUS_4                2                 29
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q GAIN MUTATED        0      2      0      2      2
  14Q GAIN WILD-TYPE     18     40     17      6     54
D26V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        1      3      2
  14Q GAIN WILD-TYPE     18     60     57
D26V10, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                3                 60
  CLUS_3                2                 57
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED        0      0      2      0
  14Q GAIN WILD-TYPE     11     22     21     18
D26V11, multiclass
[1] "Remove cluster labels:" "14Q GAIN MUTATED"      
clus
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 2                 72 
        TCGA-AF-2687         TCGA-AF-2690         TCGA-AF-2693 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-AF-3911         TCGA-AF-4110         TCGA-AF-5654 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3591 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-AG-3592         TCGA-AG-3725         TCGA-AG-3731 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-AG-3732         TCGA-AG-3742         TCGA-AG-4021 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-AG-4022         TCGA-AH-6544         TCGA-AH-6547 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-AH-6643         TCGA-AH-6644         TCGA-BM-6198 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CI-6622         TCGA-CI-6623         TCGA-CI-6624 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CL-4957         TCGA-CL-5917         TCGA-CL-5918 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DC-4745         TCGA-DC-4749         TCGA-DC-5337 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6155         TCGA-DC-6156 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DC-6157         TCGA-DC-6158         TCGA-DC-6160 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DT-5265         TCGA-DY-A0XA         TCGA-DY-A1DC 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DE         TCGA-DY-A1DF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EF-5830 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EF-5831         TCGA-EI-6506         TCGA-EI-6507 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EI-6508         TCGA-EI-6509         TCGA-EI-6510 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EI-6511         TCGA-EI-6513         TCGA-EI-6514 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-F5-6464         TCGA-F5-6465         TCGA-F5-6571 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-F5-6702         TCGA-F5-6810         TCGA-F5-6811 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-F5-6812         TCGA-F5-6813         TCGA-G5-6233 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-G5-6235         TCGA-G5-6572         TCGA-G5-6641 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q GAIN MUTATED        0      0      0      0      2
  14Q GAIN WILD-TYPE      9     20     13     10     20
D26V12, multiclass
[1] "Remove cluster labels:" "14Q GAIN MUTATED"      
clus
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 2                 72 
        TCGA-AF-2687         TCGA-AF-2690         TCGA-AF-2693 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-AF-3911         TCGA-AF-4110         TCGA-AF-5654 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3591 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-AG-3592         TCGA-AG-3725         TCGA-AG-3731 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-AG-3732         TCGA-AG-3742         TCGA-AG-4021 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-AG-4022         TCGA-AH-6544         TCGA-AH-6547 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-AH-6643         TCGA-AH-6644         TCGA-BM-6198 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CI-6619         TCGA-CI-6620         TCGA-CI-6621 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CI-6622         TCGA-CI-6623         TCGA-CI-6624 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CL-4957         TCGA-CL-5917         TCGA-CL-5918 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DC-4745         TCGA-DC-4749         TCGA-DC-5337 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DC-5869         TCGA-DC-6155         TCGA-DC-6156 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DC-6157         TCGA-DC-6158         TCGA-DC-6160 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DC-6681         TCGA-DC-6682         TCGA-DC-6683 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DT-5265         TCGA-DY-A0XA         TCGA-DY-A1DC 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DY-A1DD         TCGA-DY-A1DE         TCGA-DY-A1DF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DY-A1DG         TCGA-DY-A1H8         TCGA-EF-5830 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EF-5831         TCGA-EI-6506         TCGA-EI-6507 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EI-6508         TCGA-EI-6509         TCGA-EI-6510 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EI-6511         TCGA-EI-6513         TCGA-EI-6514 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-F5-6464         TCGA-F5-6465         TCGA-F5-6571 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-F5-6702         TCGA-F5-6810         TCGA-F5-6811 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-F5-6812         TCGA-F5-6813         TCGA-G5-6233 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-G5-6235         TCGA-G5-6572         TCGA-G5-6641 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 

Clustering(27) Variable = 15Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        0      0      0
  15Q GAIN WILD-TYPE     25     22     22
D27V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        0      0      0
  15Q GAIN WILD-TYPE     24     29     16
D27V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  15Q GAIN MUTATED        0      0      2      1      0      0
  15Q GAIN WILD-TYPE     10     34     40     29     24     22
D27V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        0      1      2
  15Q GAIN WILD-TYPE     24     38     28
D27V4, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                0                 24
  CLUS_2                1                 38
  CLUS_3                2                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        1      1      0
  15Q GAIN WILD-TYPE     32     39     53
D27V5, multiclass
[1] "Remove cluster labels:" "15Q GAIN MUTATED"      
clus
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 2                124 
        TCGA-AF-2689         TCGA-AF-2690         TCGA-AF-3400 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AF-3913         TCGA-AF-5654         TCGA-AF-6136 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3574 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3591 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3593         TCGA-AG-3594         TCGA-AG-3598 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3599         TCGA-AG-3600         TCGA-AG-3601 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3602         TCGA-AG-3605         TCGA-AG-3609 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3725         TCGA-AG-3727 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3742         TCGA-AG-3878 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3881         TCGA-AG-3882         TCGA-AG-3885 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3896         TCGA-AG-3898 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-4001 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-4021         TCGA-AG-4022 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-A01J         TCGA-AG-A01N         TCGA-AG-A01Y 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-A020         TCGA-AG-A023         TCGA-AG-A026 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02N         TCGA-AG-A02X 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AH-6544         TCGA-AH-6547         TCGA-AH-6643 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AH-6644         TCGA-AH-6897         TCGA-BM-6198 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CI-6621         TCGA-CL-5918         TCGA-DC-4745 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DC-4749         TCGA-DC-5337         TCGA-DC-5869 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DC-6155         TCGA-DC-6156         TCGA-DC-6157 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DC-6158         TCGA-DC-6160         TCGA-DC-6681 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DC-6682         TCGA-DC-6683         TCGA-DT-5265 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DY-A0XA         TCGA-DY-A1DC         TCGA-DY-A1DD 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DY-A1DE         TCGA-DY-A1DF         TCGA-DY-A1DG 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DY-A1H8         TCGA-EF-5830         TCGA-EF-5831 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-EI-6508 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EI-6509         TCGA-EI-6510         TCGA-EI-6511 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EI-6512         TCGA-EI-6513         TCGA-EI-6514 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EI-6881         TCGA-EI-6882         TCGA-EI-6884 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EI-6885         TCGA-EI-6917         TCGA-F5-6465 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6810 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-F5-6813 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F5-6861         TCGA-F5-6863         TCGA-F5-6864 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G5-6233         TCGA-G5-6235         TCGA-G5-6572 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G5-6641 
"15Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q GAIN MUTATED        0      1      1      0      0
  15Q GAIN WILD-TYPE      6     16     31     26     45
D27V6, multiclass
[1] "Remove cluster labels:" "15Q GAIN MUTATED"      
clus
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 2                124 
        TCGA-AF-2689         TCGA-AF-2690         TCGA-AF-3400 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AF-3913         TCGA-AF-5654         TCGA-AF-6136 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3574 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3578         TCGA-AG-3580         TCGA-AG-3581 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3582         TCGA-AG-3583         TCGA-AG-3584 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3586         TCGA-AG-3587         TCGA-AG-3591 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3593         TCGA-AG-3594         TCGA-AG-3598 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3599         TCGA-AG-3600         TCGA-AG-3601 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3602         TCGA-AG-3605         TCGA-AG-3609 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3612         TCGA-AG-3725         TCGA-AG-3727 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3742         TCGA-AG-3878 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3881         TCGA-AG-3882         TCGA-AG-3885 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3893         TCGA-AG-3896         TCGA-AG-3898 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-4001 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-4005         TCGA-AG-4007         TCGA-AG-4008 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-4015         TCGA-AG-4021         TCGA-AG-4022 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-A002         TCGA-AG-A008         TCGA-AG-A00C 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-A00H         TCGA-AG-A00Y         TCGA-AG-A011 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-A014         TCGA-AG-A015         TCGA-AG-A016 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-A01J         TCGA-AG-A01N         TCGA-AG-A01Y 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-A020         TCGA-AG-A023         TCGA-AG-A026 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-A02G         TCGA-AG-A02N         TCGA-AG-A02X 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AH-6544         TCGA-AH-6547         TCGA-AH-6643 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AH-6644         TCGA-AH-6897         TCGA-BM-6198 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CI-6621         TCGA-CL-5918         TCGA-DC-4745 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DC-4749         TCGA-DC-5337         TCGA-DC-5869 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DC-6155         TCGA-DC-6156         TCGA-DC-6157 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DC-6158         TCGA-DC-6160         TCGA-DC-6681 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DC-6682         TCGA-DC-6683         TCGA-DT-5265 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DY-A0XA         TCGA-DY-A1DC         TCGA-DY-A1DD 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DY-A1DE         TCGA-DY-A1DF         TCGA-DY-A1DG 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DY-A1H8         TCGA-EF-5830         TCGA-EF-5831 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EI-6506         TCGA-EI-6507         TCGA-EI-6508 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EI-6509         TCGA-EI-6510         TCGA-EI-6511 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EI-6512         TCGA-EI-6513         TCGA-EI-6514 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EI-6881         TCGA-EI-6882         TCGA-EI-6884 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EI-6885         TCGA-EI-6917         TCGA-F5-6465 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6810 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-F5-6813 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F5-6861         TCGA-F5-6863         TCGA-F5-6864 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G5-6233         TCGA-G5-6235         TCGA-G5-6572 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G5-6641 
"15Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        2      0      1
  15Q GAIN WILD-TYPE     56     31     64
D27V7, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                2                 56
  CLUS_2                0                 31
  CLUS_3                1                 64
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED        1      0      2      0
  15Q GAIN WILD-TYPE     65      7     48     31
D27V8, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                1                 65
  CLUS_2                0                  7
  CLUS_3                2                 48
  CLUS_4                0                 31
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q GAIN MUTATED        1      0      0      0      1
  15Q GAIN WILD-TYPE     17     42     17      8     55
D27V9, multiclass
[1] "Remove cluster labels:" "15Q GAIN MUTATED"      
clus
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 2                139 
        TCGA-AF-2687         TCGA-AF-2689         TCGA-AF-2690 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-2693 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AF-3400         TCGA-AF-3911         TCGA-AF-3913 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-5654         TCGA-AF-6136 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3574 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3575         TCGA-AG-3578         TCGA-AG-3580 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3584         TCGA-AG-3586         TCGA-AG-3587 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3591         TCGA-AG-3592         TCGA-AG-3593 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3608         TCGA-AG-3609 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3611         TCGA-AG-3612         TCGA-AG-3725 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3726         TCGA-AG-3727         TCGA-AG-3728 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AG-3742 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-4021         TCGA-AG-4022         TCGA-AG-A002 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-A008         TCGA-AG-A00C         TCGA-AG-A011 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01L 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-A01N         TCGA-AG-A01Y         TCGA-AG-A020 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-A025         TCGA-AG-A026         TCGA-AG-A02G 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-A02N         TCGA-AG-A02X         TCGA-AH-6544 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6643         TCGA-AH-6644 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BM-6198         TCGA-CI-6619         TCGA-CI-6620 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CI-6621         TCGA-CI-6622         TCGA-CI-6623 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CI-6624         TCGA-CL-4957         TCGA-CL-5917 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CL-5918         TCGA-DC-4745         TCGA-DC-4749 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DC-5337         TCGA-DC-5869         TCGA-DC-6155 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DC-6156         TCGA-DC-6157         TCGA-DC-6158 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DC-6160         TCGA-DC-6681         TCGA-DC-6682 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DC-6683         TCGA-DT-5265         TCGA-DY-A0XA 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DY-A1DC         TCGA-DY-A1DD         TCGA-DY-A1DE 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DY-A1DF         TCGA-DY-A1DG         TCGA-DY-A1H8 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EF-5830         TCGA-EF-5831         TCGA-EI-6506 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EI-6507         TCGA-EI-6508         TCGA-EI-6509 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EI-6510         TCGA-EI-6511         TCGA-EI-6512 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EI-6513         TCGA-EI-6514         TCGA-F5-6465 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6810 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-F5-6813 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G5-6233         TCGA-G5-6235         TCGA-G5-6572 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G5-6641 
"15Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        0      1      1
  15Q GAIN WILD-TYPE     19     62     58
D27V10, multiclass
[1] "Remove cluster labels:" "15Q GAIN MUTATED"      
clus
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 2                139 
        TCGA-AF-2687         TCGA-AF-2689         TCGA-AF-2690 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AF-2691         TCGA-AF-2692         TCGA-AF-2693 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AF-3400         TCGA-AF-3911         TCGA-AF-3913 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AF-4110         TCGA-AF-5654         TCGA-AF-6136 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AF-6655         TCGA-AF-6672         TCGA-AG-3574 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3575         TCGA-AG-3578         TCGA-AG-3580 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3584         TCGA-AG-3586         TCGA-AG-3587 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3591         TCGA-AG-3592         TCGA-AG-3593 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3594         TCGA-AG-3598         TCGA-AG-3599 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3600         TCGA-AG-3601         TCGA-AG-3602 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3608         TCGA-AG-3609 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3611         TCGA-AG-3612         TCGA-AG-3725 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3726         TCGA-AG-3727         TCGA-AG-3728 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AG-3742 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3878         TCGA-AG-3881         TCGA-AG-3882 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3883         TCGA-AG-3885         TCGA-AG-3887 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3890         TCGA-AG-3892         TCGA-AG-3893 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3894         TCGA-AG-3896         TCGA-AG-3898 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3901         TCGA-AG-3902         TCGA-AG-3909 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3999         TCGA-AG-4001         TCGA-AG-4005 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-4007         TCGA-AG-4008         TCGA-AG-4015 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-4021         TCGA-AG-4022         TCGA-AG-A002 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-A008         TCGA-AG-A00C         TCGA-AG-A011 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01L 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-A01N         TCGA-AG-A01Y         TCGA-AG-A020 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-A025         TCGA-AG-A026         TCGA-AG-A02G 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-A02N         TCGA-AG-A02X         TCGA-AH-6544 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6643         TCGA-AH-6644 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BM-6198         TCGA-CI-6619         TCGA-CI-6620 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CI-6621         TCGA-CI-6622         TCGA-CI-6623 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CI-6624         TCGA-CL-4957         TCGA-CL-5917 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CL-5918         TCGA-DC-4745         TCGA-DC-4749 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DC-5337         TCGA-DC-5869         TCGA-DC-6155 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DC-6156         TCGA-DC-6157         TCGA-DC-6158 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DC-6160         TCGA-DC-6681         TCGA-DC-6682 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DC-6683         TCGA-DT-5265         TCGA-DY-A0XA 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DY-A1DC         TCGA-DY-A1DD         TCGA-DY-A1DE 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DY-A1DF         TCGA-DY-A1DG         TCGA-DY-A1H8 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EF-5830         TCGA-EF-5831         TCGA-EI-6506 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EI-6507         TCGA-EI-6508         TCGA-EI-6509 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EI-6510         TCGA-EI-6511         TCGA-EI-6512 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EI-6513         TCGA-EI-6514         TCGA-F5-6465 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6810 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-F5-6813 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G5-6233         TCGA-G5-6235         TCGA-G5-6572 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G5-6641 
"15Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED        0      1      0      0
  15Q GAIN WILD-TYPE     11     21     23     18
D27V11, multiclass
[1] "Remove cluster labels:" "15Q GAIN MUTATED"      
clus
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 1                 73 
        TCGA-AF-2687         TCGA-AF-2690         TCGA-AF-2693 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AF-3911         TCGA-AF-4110         TCGA-AF-5654 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AF-6136         TCGA-AF-6655         TCGA-AF-6672 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3591         TCGA-AG-3592         TCGA-AG-3725 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AG-3742 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-4021         TCGA-AG-4022         TCGA-AH-6544 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6643         TCGA-AH-6644 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BM-6198         TCGA-CI-6619         TCGA-CI-6620 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CI-6621         TCGA-CI-6622         TCGA-CI-6623 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CI-6624         TCGA-CL-4957         TCGA-CL-5917 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CL-5918         TCGA-DC-4745         TCGA-DC-4749 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DC-5337         TCGA-DC-5869         TCGA-DC-6155 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DC-6156         TCGA-DC-6157         TCGA-DC-6158 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DC-6160         TCGA-DC-6681         TCGA-DC-6682 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DC-6683         TCGA-DT-5265         TCGA-DY-A0XA 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DY-A1DC         TCGA-DY-A1DD         TCGA-DY-A1DE 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DY-A1DF         TCGA-DY-A1DG         TCGA-DY-A1H8 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EF-5830         TCGA-EF-5831         TCGA-EI-6506 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EI-6507         TCGA-EI-6508         TCGA-EI-6509 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EI-6510         TCGA-EI-6511         TCGA-EI-6512 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EI-6513         TCGA-EI-6514         TCGA-F5-6465 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6810 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-F5-6813 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G5-6233         TCGA-G5-6235         TCGA-G5-6572 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G5-6641 
"15Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q GAIN MUTATED        0      1      0      0      0
  15Q GAIN WILD-TYPE      9     19     13     10     22
D27V12, multiclass
[1] "Remove cluster labels:" "15Q GAIN MUTATED"      
clus
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 1                 73 
        TCGA-AF-2687         TCGA-AF-2690         TCGA-AF-2693 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AF-3911         TCGA-AF-4110         TCGA-AF-5654 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AF-6136         TCGA-AF-6655         TCGA-AF-6672 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3591         TCGA-AG-3592         TCGA-AG-3725 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-3731         TCGA-AG-3732         TCGA-AG-3742 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AG-4021         TCGA-AG-4022         TCGA-AH-6544 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-AH-6547         TCGA-AH-6643         TCGA-AH-6644 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BM-6198         TCGA-CI-6619         TCGA-CI-6620 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CI-6621         TCGA-CI-6622         TCGA-CI-6623 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CI-6624         TCGA-CL-4957         TCGA-CL-5917 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CL-5918         TCGA-DC-4745         TCGA-DC-4749 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DC-5337         TCGA-DC-5869         TCGA-DC-6155 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DC-6156         TCGA-DC-6157         TCGA-DC-6158 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DC-6160         TCGA-DC-6681         TCGA-DC-6682 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DC-6683         TCGA-DT-5265         TCGA-DY-A0XA 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DY-A1DC         TCGA-DY-A1DD         TCGA-DY-A1DE 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DY-A1DF         TCGA-DY-A1DG         TCGA-DY-A1H8 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EF-5830         TCGA-EF-5831         TCGA-EI-6506 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EI-6507         TCGA-EI-6508         TCGA-EI-6509 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EI-6510         TCGA-EI-6511         TCGA-EI-6512 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EI-6513         TCGA-EI-6514         TCGA-F5-6465 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F5-6571         TCGA-F5-6702         TCGA-F5-6810 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-F5-6811         TCGA-F5-6812         TCGA-F5-6813 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G5-6233         TCGA-G5-6235         TCGA-G5-6572 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G5-6641 
"15Q GAIN WILD-TYPE" 

Clustering(28) Variable = 16P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        7      2      7
  16P GAIN WILD-TYPE     18     20     15
D28V1, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                7                 18
  CLUS_2                2                 20
  CLUS_3                7                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        7      6      3
  16P GAIN WILD-TYPE     17     23     13
D28V2, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                7                 17
  CLUS_2                6                 23
  CLUS_3                3                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16P GAIN MUTATED        3     13      2      5     10      6
  16P GAIN WILD-TYPE      7     21     40     25     14     16
D28V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        8      8      7
  16P GAIN WILD-TYPE     16     31     23
D28V4, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                8                 16
  CLUS_2                8                 31
  CLUS_3                7                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        8      8     11
  16P GAIN WILD-TYPE     25     32     42
D28V5, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                8                 25
  CLUS_2                8                 32
  CLUS_3               11                 42
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P GAIN MUTATED        1      4      7      6      9
  16P GAIN WILD-TYPE      5     13     25     20     36
D28V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       18      6     14
  16P GAIN WILD-TYPE     40     25     51
D28V7, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               18                 40
  CLUS_2                6                 25
  CLUS_3               14                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED       15      1     14      8
  16P GAIN WILD-TYPE     51      6     36     23
D28V8, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               15                 51
  CLUS_2                1                  6
  CLUS_3               14                 36
  CLUS_4                8                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P GAIN MUTATED        4     14      2      4     11
  16P GAIN WILD-TYPE     14     28     15      4     45
D28V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        4     13     18
  16P GAIN WILD-TYPE     15     50     41
D28V10, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                4                 15
  CLUS_2               13                 50
  CLUS_3               18                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED        0      9      8      4
  16P GAIN WILD-TYPE     11     13     15     14
D28V11, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                9                 13
  CLUS_3                8                 15
  CLUS_4                4                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P GAIN MUTATED        1      6      3      2      9
  16P GAIN WILD-TYPE      8     14     10      8     13
D28V12, multiclass

Clustering(29) Variable = 16Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        6      1      7
  16Q GAIN WILD-TYPE     19     21     15
D29V1, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                6                 19
  CLUS_2                1                 21
  CLUS_3                7                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        6      6      2
  16Q GAIN WILD-TYPE     18     23     14
D29V2, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                6                 18
  CLUS_2                6                 23
  CLUS_3                2                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16Q GAIN MUTATED        5     13      1      3     11      6
  16Q GAIN WILD-TYPE      5     21     41     27     13     16
D29V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        8      9      8
  16Q GAIN WILD-TYPE     16     30     22
D29V4, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                8                 16
  CLUS_2                9                 30
  CLUS_3                8                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        8      9     12
  16Q GAIN WILD-TYPE     25     31     41
D29V5, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                8                 25
  CLUS_2                9                 31
  CLUS_3               12                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q GAIN MUTATED        1      4      7      5     12
  16Q GAIN WILD-TYPE      5     13     25     21     33
D29V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       20      5     12
  16Q GAIN WILD-TYPE     38     26     53
D29V7, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               20                 38
  CLUS_2                5                 26
  CLUS_3               12                 53
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED       13      1     16      7
  16Q GAIN WILD-TYPE     53      6     34     24
D29V8, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               13                 53
  CLUS_2                1                  6
  CLUS_3               16                 34
  CLUS_4                7                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q GAIN MUTATED        7     14      2      4      8
  16Q GAIN WILD-TYPE     11     28     15      4     48
D29V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        4     11     20
  16Q GAIN WILD-TYPE     15     52     39
D29V10, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                4                 15
  CLUS_2               11                 52
  CLUS_3               20                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        0     11      7      5
  16Q GAIN WILD-TYPE     11     11     16     13
D29V11, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                0                 11
  CLUS_2               11                 11
  CLUS_3                7                 16
  CLUS_4                5                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q GAIN MUTATED        1      8      3      2      9
  16Q GAIN WILD-TYPE      8     12     10      8     13
D29V12, multiclass

Clustering(30) Variable = 17P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        0      3      1
  17P GAIN WILD-TYPE     25     19     21
D30V1, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                0                 25
  CLUS_2                3                 19
  CLUS_3                1                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        0      2      2
  17P GAIN WILD-TYPE     24     27     14
D30V2, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                0                 24
  CLUS_2                2                 27
  CLUS_3                2                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17P GAIN MUTATED        1      3      0      4      0      0
  17P GAIN WILD-TYPE      9     31     42     26     24     22
D30V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        2      2      0
  17P GAIN WILD-TYPE     22     37     30
D30V4, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                2                 22
  CLUS_2                2                 37
  CLUS_3                0                 30
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        1      2      2
  17P GAIN WILD-TYPE     32     38     51
D30V5, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                1                 32
  CLUS_2                2                 38
  CLUS_3                2                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P GAIN MUTATED        0      0      1      1      3
  17P GAIN WILD-TYPE      6     17     31     25     42
D30V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        3      0      4
  17P GAIN WILD-TYPE     55     31     61
D30V7, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                3                 55
  CLUS_2                0                 31
  CLUS_3                4                 61
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED        4      0      2      1
  17P GAIN WILD-TYPE     62      7     48     30
D30V8, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                4                 62
  CLUS_2                0                  7
  CLUS_3                2                 48
  CLUS_4                1                 30
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P GAIN MUTATED        0      3      0      1      3
  17P GAIN WILD-TYPE     18     39     17      7     53
D30V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        1      4      2
  17P GAIN WILD-TYPE     18     59     57
D30V10, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                4                 59
  CLUS_3                2                 57
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED        1      0      2      0
  17P GAIN WILD-TYPE     10     22     21     18
D30V11, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                0                 22
  CLUS_3                2                 21
  CLUS_4                0                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P GAIN MUTATED        1      0      1      0      1
  17P GAIN WILD-TYPE      8     20     12     10     21
D30V12, multiclass

Clustering(31) Variable = 17Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        2      5      6
  17Q GAIN WILD-TYPE     23     17     16
D31V1, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                2                 23
  CLUS_2                5                 17
  CLUS_3                6                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        3      6      4
  17Q GAIN WILD-TYPE     21     23     12
D31V2, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                6                 23
  CLUS_3                4                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17Q GAIN MUTATED        0     14      5      8      0      3
  17Q GAIN WILD-TYPE     10     20     37     22     24     19
D31V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        6      5      6
  17Q GAIN WILD-TYPE     18     34     24
D31V4, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                6                 18
  CLUS_2                5                 34
  CLUS_3                6                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        7      8      9
  17Q GAIN WILD-TYPE     26     32     44
D31V5, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                7                 26
  CLUS_2                8                 32
  CLUS_3                9                 44
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q GAIN MUTATED        2      3      5      5      9
  17Q GAIN WILD-TYPE      4     14     27     21     36
D31V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       11      5     12
  17Q GAIN WILD-TYPE     47     26     53
D31V7, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               11                 47
  CLUS_2                5                 26
  CLUS_3               12                 53
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED       12      1     11      4
  17Q GAIN WILD-TYPE     54      6     39     27
D31V8, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               12                 54
  CLUS_2                1                  6
  CLUS_3               11                 39
  CLUS_4                4                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q GAIN MUTATED        2     11      0      3      9
  17Q GAIN WILD-TYPE     16     31     17      5     47
D31V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        4     11     10
  17Q GAIN WILD-TYPE     15     52     49
D31V10, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                4                 15
  CLUS_2               11                 52
  CLUS_3               10                 49
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED        3      4      5      1
  17Q GAIN WILD-TYPE      8     18     18     17
D31V11, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                3                  8
  CLUS_2                4                 18
  CLUS_3                5                 18
  CLUS_4                1                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q GAIN MUTATED        3      4      2      0      4
  17Q GAIN WILD-TYPE      6     16     11     10     18
D31V12, multiclass

Clustering(32) Variable = 18P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        1      2      0
  18P GAIN WILD-TYPE     24     20     22
D32V1, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                1                 24
  CLUS_2                2                 20
  CLUS_3                0                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        1      1      1
  18P GAIN WILD-TYPE     23     28     15
D32V2, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                1                 23
  CLUS_2                1                 28
  CLUS_3                1                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18P GAIN MUTATED        0      0      2      6      0      0
  18P GAIN WILD-TYPE     10     34     40     24     24     22
D32V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        1      3      1
  18P GAIN WILD-TYPE     23     36     29
D32V4, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                1                 23
  CLUS_2                3                 36
  CLUS_3                1                 29
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        3      2      3
  18P GAIN WILD-TYPE     30     38     50
D32V5, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                3                 30
  CLUS_2                2                 38
  CLUS_3                3                 50
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P GAIN MUTATED        1      2      2      1      2
  18P GAIN WILD-TYPE      5     15     30     25     43
D32V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        2      2      4
  18P GAIN WILD-TYPE     56     29     61
D32V7, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                2                 56
  CLUS_2                2                 29
  CLUS_3                4                 61
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED        4      0      2      2
  18P GAIN WILD-TYPE     62      7     48     29
D32V8, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                4                 62
  CLUS_2                0                  7
  CLUS_3                2                 48
  CLUS_4                2                 29
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P GAIN MUTATED        2      2      0      1      3
  18P GAIN WILD-TYPE     16     40     17      7     53
D32V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        1      3      4
  18P GAIN WILD-TYPE     18     60     55
D32V10, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                3                 60
  CLUS_3                4                 55
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED        1      2      1      0
  18P GAIN WILD-TYPE     10     20     22     18
D32V11, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                2                 20
  CLUS_3                1                 22
  CLUS_4                0                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P GAIN MUTATED        1      2      0      0      1
  18P GAIN WILD-TYPE      8     18     13     10     21
D32V12, multiclass

Clustering(33) Variable = 18Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        1      1      0
  18Q GAIN WILD-TYPE     24     21     22
D33V1, multiclass
[1] "Remove cluster labels:" "18Q GAIN MUTATED"      
clus
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 2                 67 
        TCGA-AF-2689         TCGA-AF-2691         TCGA-AF-2692 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AF-3400         TCGA-AF-3913         TCGA-AG-3574 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-3575         TCGA-AG-3578         TCGA-AG-3580 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-3584         TCGA-AG-3586         TCGA-AG-3587 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-3593         TCGA-AG-3594         TCGA-AG-3598 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-3599         TCGA-AG-3601         TCGA-AG-3602 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3608         TCGA-AG-3609 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-3611         TCGA-AG-3612         TCGA-AG-3726 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3728         TCGA-AG-3878 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-3881         TCGA-AG-3882         TCGA-AG-3883 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-3885         TCGA-AG-3887         TCGA-AG-3890 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-3896         TCGA-AG-3898         TCGA-AG-3901 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-3902         TCGA-AG-3909         TCGA-AG-3999 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-4001         TCGA-AG-4005         TCGA-AG-4007 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-4015         TCGA-AG-A002 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-A008         TCGA-AG-A00C         TCGA-AG-A00H 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-A00Y         TCGA-AG-A011         TCGA-AG-A014 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01J 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A01N         TCGA-AG-A023 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-A025         TCGA-AG-A026         TCGA-AG-A02X 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-A032 
"18Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        1      0      1
  18Q GAIN WILD-TYPE     23     29     15
D33V2, multiclass
[1] "Remove cluster labels:" "18Q GAIN MUTATED"      
clus
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 2                 67 
        TCGA-AF-2689         TCGA-AF-2691         TCGA-AF-2692 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AF-3400         TCGA-AF-3913         TCGA-AG-3574 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-3575         TCGA-AG-3578         TCGA-AG-3580 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-3581         TCGA-AG-3582         TCGA-AG-3583 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-3584         TCGA-AG-3586         TCGA-AG-3587 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-3593         TCGA-AG-3594         TCGA-AG-3598 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-3599         TCGA-AG-3601         TCGA-AG-3602 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-3605         TCGA-AG-3608         TCGA-AG-3609 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-3611         TCGA-AG-3612         TCGA-AG-3726 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-3727         TCGA-AG-3728         TCGA-AG-3878 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-3881         TCGA-AG-3882         TCGA-AG-3883 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-3885         TCGA-AG-3887         TCGA-AG-3890 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-3892         TCGA-AG-3893         TCGA-AG-3894 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-3896         TCGA-AG-3898         TCGA-AG-3901 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-3902         TCGA-AG-3909         TCGA-AG-3999 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-4001         TCGA-AG-4005         TCGA-AG-4007 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-4008         TCGA-AG-4015         TCGA-AG-A002 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-A008         TCGA-AG-A00C         TCGA-AG-A00H 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-A00Y         TCGA-AG-A011         TCGA-AG-A014 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-A015         TCGA-AG-A016         TCGA-AG-A01J 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-A01L         TCGA-AG-A01N         TCGA-AG-A023 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-A025         TCGA-AG-A026         TCGA-AG-A02X 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-AG-A032 
"18Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18Q GAIN MUTATED        0      0      2      4      0      0
  18Q GAIN WILD-TYPE     10     34     40     26     24     22
D33V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        0      3      1
  18Q GAIN WILD-TYPE     24     36     29
D33V4, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                0                 24
  CLUS_2                3                 36
  CLUS_3                1                 29
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        3      1      2
  18Q GAIN WILD-TYPE     30     39     51
D33V5, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                3                 30
  CLUS_2                1                 39
  CLUS_3                2                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q GAIN MUTATED        0      2      1      1      2
  18Q GAIN WILD-TYPE      6     15     31     25     43
D33V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        2      2      2
  18Q GAIN WILD-TYPE     56     29     63
D33V7, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                2                 56
  CLUS_2                2                 29
  CLUS_3                2                 63
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED        2      0      2      2
  18Q GAIN WILD-TYPE     64      7     48     29
D33V8, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                2                 64
  CLUS_2                0                  7
  CLUS_3                2                 48
  CLUS_4                2                 29
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q GAIN MUTATED        2      2      0      0      2
  18Q GAIN WILD-TYPE     16     40     17      8     54
D33V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        0      2      4
  18Q GAIN WILD-TYPE     19     61     55
D33V10, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                2                 61
  CLUS_3                4                 55
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED        1      2      1      0
  18Q GAIN WILD-TYPE     10     20     22     18
D33V11, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                2                 20
  CLUS_3                1                 22
  CLUS_4                0                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q GAIN MUTATED        1      2      0      0      1
  18Q GAIN WILD-TYPE      8     18     13     10     21
D33V12, multiclass

Clustering(34) Variable = 19P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        2      5      8
  19P GAIN WILD-TYPE     23     17     14
D34V1, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                2                 23
  CLUS_2                5                 17
  CLUS_3                8                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        3     10      2
  19P GAIN WILD-TYPE     21     19     14
D34V2, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                3                 21
  CLUS_2               10                 19
  CLUS_3                2                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19P GAIN MUTATED        2     14      3      6      3      3
  19P GAIN WILD-TYPE      8     20     39     24     21     19
D34V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        5      7      5
  19P GAIN WILD-TYPE     19     32     25
D34V4, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                5                 19
  CLUS_2                7                 32
  CLUS_3                5                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        9      7     10
  19P GAIN WILD-TYPE     24     33     43
D34V5, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                9                 24
  CLUS_2                7                 33
  CLUS_3               10                 43
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P GAIN MUTATED        0      2      6      8     10
  19P GAIN WILD-TYPE      6     15     26     18     35
D34V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        9      6     14
  19P GAIN WILD-TYPE     49     25     51
D34V7, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                9                 49
  CLUS_2                6                 25
  CLUS_3               14                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED       14      1      8      6
  19P GAIN WILD-TYPE     52      6     42     25
D34V8, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               14                 52
  CLUS_2                1                  6
  CLUS_3                8                 42
  CLUS_4                6                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P GAIN MUTATED        3      9      1      4      9
  19P GAIN WILD-TYPE     15     33     16      4     47
D34V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        2     12     12
  19P GAIN WILD-TYPE     17     51     47
D34V10, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                2                 17
  CLUS_2               12                 51
  CLUS_3               12                 47
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED        3      3      5      2
  19P GAIN WILD-TYPE      8     19     18     16
D34V11, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                3                  8
  CLUS_2                3                 19
  CLUS_3                5                 18
  CLUS_4                2                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P GAIN MUTATED        3      4      1      1      4
  19P GAIN WILD-TYPE      6     16     12      9     18
D34V12, multiclass

Clustering(35) Variable = 19Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        4      3      9
  19Q GAIN WILD-TYPE     21     19     13
D35V1, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                4                 21
  CLUS_2                3                 19
  CLUS_3                9                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        5     10      1
  19Q GAIN WILD-TYPE     19     19     15
D35V2, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                5                 19
  CLUS_2               10                 19
  CLUS_3                1                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19Q GAIN MUTATED        3     13      3      5      4      2
  19Q GAIN WILD-TYPE      7     21     39     25     20     20
D35V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        5      6      4
  19Q GAIN WILD-TYPE     19     33     26
D35V4, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                5                 19
  CLUS_2                6                 33
  CLUS_3                4                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        6      7     11
  19Q GAIN WILD-TYPE     27     33     42
D35V5, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                6                 27
  CLUS_2                7                 33
  CLUS_3               11                 42
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q GAIN MUTATED        0      1      6      6     11
  19Q GAIN WILD-TYPE      6     16     26     20     34
D35V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        9      5     15
  19Q GAIN WILD-TYPE     49     26     50
D35V7, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                9                 49
  CLUS_2                5                 26
  CLUS_3               15                 50
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED       15      1      7      6
  19Q GAIN WILD-TYPE     51      6     43     25
D35V8, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               15                 51
  CLUS_2                1                  6
  CLUS_3                7                 43
  CLUS_4                6                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q GAIN MUTATED        2      8      1      3     11
  19Q GAIN WILD-TYPE     16     34     16      5     45
D35V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        2     13     10
  19Q GAIN WILD-TYPE     17     50     49
D35V10, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                2                 17
  CLUS_2               13                 50
  CLUS_3               10                 49
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED        4      2      3      2
  19Q GAIN WILD-TYPE      7     20     20     16
D35V11, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                4                  7
  CLUS_2                2                 20
  CLUS_3                3                 20
  CLUS_4                2                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q GAIN MUTATED        4      2      1      1      3
  19Q GAIN WILD-TYPE      5     18     12      9     19
D35V12, multiclass

Clustering(36) Variable = 20P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       16     10     17
  20P GAIN WILD-TYPE      9     12      5
D36V1, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               16                  9
  CLUS_2               10                 12
  CLUS_3               17                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       16     20      7
  20P GAIN WILD-TYPE      8      9      9
D36V2, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               16                  8
  CLUS_2               20                  9
  CLUS_3                7                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20P GAIN MUTATED        9     24     27     16     15     13
  20P GAIN WILD-TYPE      1     10     15     14      9      9
D36V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       15     27     18
  20P GAIN WILD-TYPE      9     12     12
D36V4, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               15                  9
  CLUS_2               27                 12
  CLUS_3               18                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       20     21     40
  20P GAIN WILD-TYPE     13     19     13
D36V5, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               20                 13
  CLUS_2               21                 19
  CLUS_3               40                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P GAIN MUTATED        4     10     18     17     32
  20P GAIN WILD-TYPE      2      7     14      9     13
D36V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       38     25     37
  20P GAIN WILD-TYPE     20      6     28
D36V7, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               38                 20
  CLUS_2               25                  6
  CLUS_3               37                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED       41      2     35     22
  20P GAIN WILD-TYPE     25      5     15      9
D36V8, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               41                 25
  CLUS_2                2                  5
  CLUS_3               35                 15
  CLUS_4               22                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P GAIN MUTATED       12     31     10      4     32
  20P GAIN WILD-TYPE      6     11      7      4     24
D36V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED        9     36     44
  20P GAIN WILD-TYPE     10     27     15
D36V10, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                9                 10
  CLUS_2               36                 27
  CLUS_3               44                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED        8     13     18     12
  20P GAIN WILD-TYPE      3      9      5      6
D36V11, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                8                  3
  CLUS_2               13                  9
  CLUS_3               18                  5
  CLUS_4               12                  6
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P GAIN MUTATED        8     12      5      8     18
  20P GAIN WILD-TYPE      1      8      8      2      4
D36V12, multiclass

Clustering(37) Variable = 20Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       22     15     22
  20Q GAIN WILD-TYPE      3      7      0
D37V1, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               22                  3
  CLUS_2               15                  7
  CLUS_3               22                  0
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       21     26     12
  20Q GAIN WILD-TYPE      3      3      4
D37V2, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               21                  3
  CLUS_2               26                  3
  CLUS_3               12                  4
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20Q GAIN MUTATED       10     34     32     22     24     20
  20Q GAIN WILD-TYPE      0      0     10      8      0      2
D37V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       23     35     25
  20Q GAIN WILD-TYPE      1      4      5
D37V4, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               23                  1
  CLUS_2               35                  4
  CLUS_3               25                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       27     36     50
  20Q GAIN WILD-TYPE      6      4      3
D37V5, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               27                  6
  CLUS_2               36                  4
  CLUS_3               50                  3
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q GAIN MUTATED        5     13     29     22     44
  20Q GAIN WILD-TYPE      1      4      3      4      1
D37V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       52     28     54
  20Q GAIN WILD-TYPE      6      3     11
D37V7, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               52                  6
  CLUS_2               28                  3
  CLUS_3               54                 11
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED       57      2     46     29
  20Q GAIN WILD-TYPE      9      5      4      2
D37V8, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               57                  9
  CLUS_2                2                  5
  CLUS_3               46                  4
  CLUS_4               29                  2
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q GAIN MUTATED       17     41     14      6     46
  20Q GAIN WILD-TYPE      1      1      3      2     10
D37V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       17     52     55
  20Q GAIN WILD-TYPE      2     11      4
D37V10, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               17                  2
  CLUS_2               52                 11
  CLUS_3               55                  4
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED       10     20     23     16
  20Q GAIN WILD-TYPE      1      2      0      2
D37V11, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               10                  1
  CLUS_2               20                  2
  CLUS_3               23                  0
  CLUS_4               16                  2
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q GAIN MUTATED        9     18     11      9     22
  20Q GAIN WILD-TYPE      0      2      2      1      0
D37V12, multiclass

Clustering(38) Variable = 21Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        2      2      0
  21Q GAIN WILD-TYPE     23     20     22
D38V1, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                2                 23
  CLUS_2                2                 20
  CLUS_3                0                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        0      1      3
  21Q GAIN WILD-TYPE     24     28     13
D38V2, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                0                 24
  CLUS_2                1                 28
  CLUS_3                3                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  21Q GAIN MUTATED        2      1      1      2      1      3
  21Q GAIN WILD-TYPE      8     33     41     28     23     19
D38V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        2      2      2
  21Q GAIN WILD-TYPE     22     37     28
D38V4, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                2                 22
  CLUS_2                2                 37
  CLUS_3                2                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        2      1      4
  21Q GAIN WILD-TYPE     31     39     49
D38V5, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                2                 31
  CLUS_2                1                 39
  CLUS_3                4                 49
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q GAIN MUTATED        0      0      2      3      2
  21Q GAIN WILD-TYPE      6     17     30     23     43
D38V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        5      2      3
  21Q GAIN WILD-TYPE     53     29     62
D38V7, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                5                 53
  CLUS_2                2                 29
  CLUS_3                3                 62
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED        4      0      4      2
  21Q GAIN WILD-TYPE     62      7     46     29
D38V8, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                4                 62
  CLUS_2                0                  7
  CLUS_3                4                 46
  CLUS_4                2                 29
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q GAIN MUTATED        1      1      3      0      4
  21Q GAIN WILD-TYPE     17     41     14      8     52
D38V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        2      4      3
  21Q GAIN WILD-TYPE     17     59     56
D38V10, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                2                 17
  CLUS_2                4                 59
  CLUS_3                3                 56
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED        0      2      1      2
  21Q GAIN WILD-TYPE     11     20     22     16
D38V11, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                2                 20
  CLUS_3                1                 22
  CLUS_4                2                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q GAIN MUTATED        0      2      2      0      1
  21Q GAIN WILD-TYPE      9     18     11     10     21
D38V12, multiclass

Clustering(39) Variable = 22Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        1      2      2
  22Q GAIN WILD-TYPE     24     20     20
D39V1, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                 24
  CLUS_2                2                 20
  CLUS_3                2                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        1      4      0
  22Q GAIN WILD-TYPE     23     25     16
D39V2, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                 23
  CLUS_2                4                 25
  CLUS_3                0                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  22Q GAIN MUTATED        1      3      1      1      3      0
  22Q GAIN WILD-TYPE      9     31     41     29     21     22
D39V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        1      2      1
  22Q GAIN WILD-TYPE     23     37     29
D39V4, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                 23
  CLUS_2                2                 37
  CLUS_3                1                 29
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        3      1      4
  22Q GAIN WILD-TYPE     30     39     49
D39V5, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                3                 30
  CLUS_2                1                 39
  CLUS_3                4                 49
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q GAIN MUTATED        1      1      1      3      2
  22Q GAIN WILD-TYPE      5     16     31     23     43
D39V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        4      0      5
  22Q GAIN WILD-TYPE     54     31     60
D39V7, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                4                 54
  CLUS_2                0                 31
  CLUS_3                5                 60
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED        5      0      3      1
  22Q GAIN WILD-TYPE     61      7     47     30
D39V8, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                5                 61
  CLUS_2                0                  7
  CLUS_3                3                 47
  CLUS_4                1                 30
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q GAIN MUTATED        1      2      1      0      3
  22Q GAIN WILD-TYPE     17     40     16      8     53
D39V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        1      3      3
  22Q GAIN WILD-TYPE     18     60     56
D39V10, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                3                 60
  CLUS_3                3                 56
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED        0      2      1      0
  22Q GAIN WILD-TYPE     11     20     22     18
D39V11, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                2                 20
  CLUS_3                1                 22
  CLUS_4                0                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q GAIN MUTATED        0      2      0      0      1
  22Q GAIN WILD-TYPE      9     18     13     10     21
D39V12, multiclass

Clustering(40) Variable = XQ GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        3      3      8
  XQ GAIN WILD-TYPE     22     19     14
D40V1, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               3                22
  CLUS_2               3                19
  CLUS_3               8                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        4      9      1
  XQ GAIN WILD-TYPE     20     20     15
D40V2, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               4                20
  CLUS_2               9                20
  CLUS_3               1                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XQ GAIN MUTATED        4      8      3      4      7      6
  XQ GAIN WILD-TYPE      6     26     39     26     17     16
D40V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        7      6      4
  XQ GAIN WILD-TYPE     17     33     26
D40V4, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               7                17
  CLUS_2               6                33
  CLUS_3               4                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        8      7     10
  XQ GAIN WILD-TYPE     25     33     43
D40V5, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               8                25
  CLUS_2               7                33
  CLUS_3              10                43
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ GAIN MUTATED        0      4      5      7      9
  XQ GAIN WILD-TYPE      6     13     27     19     36
D40V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       14      3     14
  XQ GAIN WILD-TYPE     44     28     51
D40V7, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              14                44
  CLUS_2               3                28
  CLUS_3              14                51
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED       13      1     12      5
  XQ GAIN WILD-TYPE     53      6     38     26
D40V8, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              13                53
  CLUS_2               1                 6
  CLUS_3              12                38
  CLUS_4               5                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ GAIN MUTATED        4      8      4      1     10
  XQ GAIN WILD-TYPE     14     34     13      7     46
D40V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        4     11     12
  XQ GAIN WILD-TYPE     15     52     47
D40V10, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               4                15
  CLUS_2              11                52
  CLUS_3              12                47
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        1      6      5      3
  XQ GAIN WILD-TYPE     10     16     18     15
D40V11, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               1                10
  CLUS_2               6                16
  CLUS_3               5                18
  CLUS_4               3                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ GAIN MUTATED        2      5      1      3      4
  XQ GAIN WILD-TYPE      7     15     12      7     18
D40V12, multiclass

Clustering(41) Variable = 1P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        5      5      7
  1P LOSS WILD-TYPE     20     17     15
D41V1, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               5                20
  CLUS_2               5                17
  CLUS_3               7                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        5     12      0
  1P LOSS WILD-TYPE     19     17     16
D41V2, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               5                19
  CLUS_2              12                17
  CLUS_3               0                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1P LOSS MUTATED        5     14      3     10     10      2
  1P LOSS WILD-TYPE      5     20     39     20     14     20
D41V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        9     14      4
  1P LOSS WILD-TYPE     15     25     26
D41V4, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               9                15
  CLUS_2              14                25
  CLUS_3               4                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        9     11     13
  1P LOSS WILD-TYPE     24     29     40
D41V5, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               9                24
  CLUS_2              11                29
  CLUS_3              13                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P LOSS MUTATED        0      2     11      7     13
  1P LOSS WILD-TYPE      6     15     21     19     32
D41V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       18      7     18
  1P LOSS WILD-TYPE     40     24     47
D41V7, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              18                40
  CLUS_2               7                24
  CLUS_3              18                47
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED       17      2     15      9
  1P LOSS WILD-TYPE     49      5     35     22
D41V8, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              17                49
  CLUS_2               2                 5
  CLUS_3              15                35
  CLUS_4               9                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P LOSS MUTATED        7     15      3      2     13
  1P LOSS WILD-TYPE     11     27     14      6     43
D41V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        7     14     19
  1P LOSS WILD-TYPE     12     49     40
D41V10, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               7                12
  CLUS_2              14                49
  CLUS_3              19                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED        3      7      9      6
  1P LOSS WILD-TYPE      8     15     14     12
D41V11, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               3                 8
  CLUS_2               7                15
  CLUS_3               9                14
  CLUS_4               6                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P LOSS MUTATED        4      5      5      3      8
  1P LOSS WILD-TYPE      5     15      8      7     14
D41V12, multiclass

Clustering(42) Variable = 1Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        3      3      4
  1Q LOSS WILD-TYPE     22     19     18
D42V1, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               3                22
  CLUS_2               3                19
  CLUS_3               4                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        3      7      0
  1Q LOSS WILD-TYPE     21     22     16
D42V2, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               3                21
  CLUS_2               7                22
  CLUS_3               0                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1Q LOSS MUTATED        1     10      2      5      6      1
  1Q LOSS WILD-TYPE      9     24     40     25     18     21
D42V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        7      7      1
  1Q LOSS WILD-TYPE     17     32     29
D42V4, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               7                17
  CLUS_2               7                32
  CLUS_3               1                29
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        5      7      6
  1Q LOSS WILD-TYPE     28     33     47
D42V5, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               5                28
  CLUS_2               7                33
  CLUS_3               6                47
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q LOSS MUTATED        0      1      7      5      5
  1Q LOSS WILD-TYPE      6     16     25     21     40
D42V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED       10      4     10
  1Q LOSS WILD-TYPE     48     27     55
D42V7, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              10                48
  CLUS_2               4                27
  CLUS_3              10                55
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED       10      1      8      5
  1Q LOSS WILD-TYPE     56      6     42     26
D42V8, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              10                56
  CLUS_2               1                 6
  CLUS_3               8                42
  CLUS_4               5                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q LOSS MUTATED        4      8      2      2      6
  1Q LOSS WILD-TYPE     14     34     15      6     50
D42V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        6      7      9
  1Q LOSS WILD-TYPE     13     56     50
D42V10, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               6                13
  CLUS_2               7                56
  CLUS_3               9                50
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED        3      3      5      3
  1Q LOSS WILD-TYPE      8     19     18     15
D42V11, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               3                 8
  CLUS_2               3                19
  CLUS_3               5                18
  CLUS_4               3                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q LOSS MUTATED        3      1      5      2      3
  1Q LOSS WILD-TYPE      6     19      8      8     19
D42V12, multiclass

Clustering(43) Variable = 2P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        2      4      2
  2P LOSS WILD-TYPE     23     18     20
D43V1, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               2                23
  CLUS_2               4                18
  CLUS_3               2                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        2      5      1
  2P LOSS WILD-TYPE     22     24     15
D43V2, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               2                22
  CLUS_2               5                24
  CLUS_3               1                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2P LOSS MUTATED        0      2      0      5      4      0
  2P LOSS WILD-TYPE     10     32     42     25     20     22
D43V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        0      2      1
  2P LOSS WILD-TYPE     24     37     29
D43V4, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               0                24
  CLUS_2               2                37
  CLUS_3               1                29
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        3      3      3
  2P LOSS WILD-TYPE     30     37     50
D43V5, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               3                30
  CLUS_2               3                37
  CLUS_3               3                50
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P LOSS MUTATED        1      1      2      3      2
  2P LOSS WILD-TYPE      5     16     30     23     43
D43V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        2      2      7
  2P LOSS WILD-TYPE     56     29     58
D43V7, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               2                56
  CLUS_2               2                29
  CLUS_3               7                58
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED        7      1      2      1
  2P LOSS WILD-TYPE     59      6     48     30
D43V8, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               7                59
  CLUS_2               1                 6
  CLUS_3               2                48
  CLUS_4               1                30
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P LOSS MUTATED        1      1      1      1      6
  2P LOSS WILD-TYPE     17     41     16      7     50
D43V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        1      6      3
  2P LOSS WILD-TYPE     18     57     56
D43V10, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               1                18
  CLUS_2               6                57
  CLUS_3               3                56
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED        0      1      1      1
  2P LOSS WILD-TYPE     11     21     22     17
D43V11, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               0                11
  CLUS_2               1                21
  CLUS_3               1                22
  CLUS_4               1                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P LOSS MUTATED        0      1      0      1      1
  2P LOSS WILD-TYPE      9     19     13      9     21
D43V12, multiclass

Clustering(44) Variable = 2Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        2      2      1
  2Q LOSS WILD-TYPE     23     20     21
D44V1, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               2                23
  CLUS_2               2                20
  CLUS_3               1                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        2      2      1
  2Q LOSS WILD-TYPE     22     27     15
D44V2, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               2                22
  CLUS_2               2                27
  CLUS_3               1                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2Q LOSS MUTATED        0      1      0      3      2      0
  2Q LOSS WILD-TYPE     10     33     42     27     22     22
D44V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        0      1      0
  2Q LOSS WILD-TYPE     24     38     30
D44V4, multiclass
[1] "Remove cluster labels:" "2Q LOSS MUTATED"       
clus
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                1                92 
       TCGA-AF-2687        TCGA-AF-2690        TCGA-AF-2693        TCGA-AF-3911 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6136        TCGA-AF-6655        TCGA-AF-6672 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-AG-3591        TCGA-AG-3592        TCGA-AG-3725        TCGA-AG-3731 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-AG-3732        TCGA-AG-3742        TCGA-AG-4021        TCGA-AG-4022 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-AG-A01W        TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A026 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-AG-A02N        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6643 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-AH-6644        TCGA-AH-6897        TCGA-AH-6903        TCGA-BM-6198 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621        TCGA-CI-6622 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CI-6623        TCGA-CI-6624        TCGA-CL-4957        TCGA-CL-5917 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CL-5918        TCGA-DC-4745        TCGA-DC-4749        TCGA-DC-5337 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DC-5869        TCGA-DC-6154        TCGA-DC-6155        TCGA-DC-6156 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6160        TCGA-DC-6681 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DC-6682        TCGA-DC-6683        TCGA-DT-5265        TCGA-DY-A0XA 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DE        TCGA-DY-A1DF 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EF-5830        TCGA-EF-5831 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EI-6506        TCGA-EI-6507        TCGA-EI-6508        TCGA-EI-6509 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EI-6510        TCGA-EI-6511        TCGA-EI-6512        TCGA-EI-6513 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EI-6514        TCGA-EI-6881        TCGA-EI-6882        TCGA-EI-6883 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EI-6884        TCGA-EI-6885        TCGA-EI-6917        TCGA-EI-7002 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EI-7004        TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6702 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F5-6810        TCGA-F5-6811        TCGA-F5-6812        TCGA-F5-6813 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F5-6814        TCGA-F5-6861        TCGA-F5-6863        TCGA-F5-6864 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-G5-6233        TCGA-G5-6235        TCGA-G5-6572        TCGA-G5-6641 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        2      3      0
  2Q LOSS WILD-TYPE     31     37     53
D44V5, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               2                31
  CLUS_2               3                37
  CLUS_3               0                53
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q LOSS MUTATED        0      1      2      2      0
  2Q LOSS WILD-TYPE      6     16     30     24     45
D44V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        1      1      4
  2Q LOSS WILD-TYPE     57     30     61
D44V7, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               1                57
  CLUS_2               1                30
  CLUS_3               4                61
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED        4      1      1      0
  2Q LOSS WILD-TYPE     62      6     49     31
D44V8, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               4                62
  CLUS_2               1                 6
  CLUS_3               1                49
  CLUS_4               0                31
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q LOSS MUTATED        1      0      0      1      3
  2Q LOSS WILD-TYPE     17     42     17      7     53
D44V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        1      3      1
  2Q LOSS WILD-TYPE     18     60     58
D44V10, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               1                18
  CLUS_2               3                60
  CLUS_3               1                58
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED        0      1      0      0
  2Q LOSS WILD-TYPE     11     21     23     18
D44V11, multiclass
[1] "Remove cluster labels:" "2Q LOSS MUTATED"       
clus
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                1                73 
       TCGA-AF-2687        TCGA-AF-2690        TCGA-AF-2693        TCGA-AF-3911 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-5654        TCGA-AF-6136        TCGA-AF-6655 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-AF-6672        TCGA-AG-3591        TCGA-AG-3592        TCGA-AG-3725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AG-3742        TCGA-AG-4021 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-AG-4022        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6643 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-AH-6644        TCGA-BM-6198        TCGA-CI-6619        TCGA-CI-6620 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6622        TCGA-CI-6623        TCGA-CI-6624 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CL-4957        TCGA-CL-5917        TCGA-CL-5918        TCGA-DC-4745 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DC-4749        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6155 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DC-6156        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6160 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683        TCGA-DT-5265 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DY-A0XA        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DY-A1DF        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EF-5830 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EF-5831        TCGA-EI-6506        TCGA-EI-6507        TCGA-EI-6508 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EI-6509        TCGA-EI-6510        TCGA-EI-6511        TCGA-EI-6512 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EI-6513        TCGA-EI-6514        TCGA-F5-6464        TCGA-F5-6465 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F5-6702        TCGA-F5-6810        TCGA-F5-6811        TCGA-F5-6812 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F5-6813        TCGA-G5-6233        TCGA-G5-6235        TCGA-G5-6572 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-G5-6641 
"2Q LOSS WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q LOSS MUTATED        0      1      0      0      0
  2Q LOSS WILD-TYPE      9     19     13     10     22
D44V12, multiclass
[1] "Remove cluster labels:" "2Q LOSS MUTATED"       
clus
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                1                73 
       TCGA-AF-2687        TCGA-AF-2690        TCGA-AF-2693        TCGA-AF-3911 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-5654        TCGA-AF-6136        TCGA-AF-6655 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-AF-6672        TCGA-AG-3591        TCGA-AG-3592        TCGA-AG-3725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-AG-3731        TCGA-AG-3732        TCGA-AG-3742        TCGA-AG-4021 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-AG-4022        TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6643 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-AH-6644        TCGA-BM-6198        TCGA-CI-6619        TCGA-CI-6620 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CI-6621        TCGA-CI-6622        TCGA-CI-6623        TCGA-CI-6624 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CL-4957        TCGA-CL-5917        TCGA-CL-5918        TCGA-DC-4745 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DC-4749        TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6155 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DC-6156        TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6160 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DC-6681        TCGA-DC-6682        TCGA-DC-6683        TCGA-DT-5265 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DY-A0XA        TCGA-DY-A1DC        TCGA-DY-A1DD        TCGA-DY-A1DE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DY-A1DF        TCGA-DY-A1DG        TCGA-DY-A1H8        TCGA-EF-5830 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EF-5831        TCGA-EI-6506        TCGA-EI-6507        TCGA-EI-6508 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EI-6509        TCGA-EI-6510        TCGA-EI-6511        TCGA-EI-6512 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EI-6513        TCGA-EI-6514        TCGA-F5-6464        TCGA-F5-6465 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F5-6702        TCGA-F5-6810        TCGA-F5-6811        TCGA-F5-6812 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-F5-6813        TCGA-G5-6233        TCGA-G5-6235        TCGA-G5-6572 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-G5-6641 
"2Q LOSS WILD-TYPE" 

Clustering(45) Variable = 3P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        2      2      1
  3P LOSS WILD-TYPE     23     20     21
D45V1, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               2                23
  CLUS_2               2                20
  CLUS_3               1                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        0      3      2
  3P LOSS WILD-TYPE     24     26     14
D45V2, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               0                24
  CLUS_2               3                26
  CLUS_3               2                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3P LOSS MUTATED        1      1      5      6      2      0
  3P LOSS WILD-TYPE      9     33     37     24     22     22
D45V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        2      4      4
  3P LOSS WILD-TYPE     22     35     26
D45V4, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               2                22
  CLUS_2               4                35
  CLUS_3               4                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        6      3      4
  3P LOSS WILD-TYPE     27     37     49
D45V5, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               6                27
  CLUS_2               3                37
  CLUS_3               4                49
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P LOSS MUTATED        0      2      2      5      4
  3P LOSS WILD-TYPE      6     15     30     21     41
D45V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        5      5      4
  3P LOSS WILD-TYPE     53     26     61
D45V7, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               5                53
  CLUS_2               5                26
  CLUS_3               4                61
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED        3      3      4      4
  3P LOSS WILD-TYPE     63      4     46     27
D45V8, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               3                63
  CLUS_2               3                 4
  CLUS_3               4                46
  CLUS_4               4                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P LOSS MUTATED        2      6      1      2      4
  3P LOSS WILD-TYPE     16     36     16      6     52
D45V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        4      5      6
  3P LOSS WILD-TYPE     15     58     53
D45V10, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               4                15
  CLUS_2               5                58
  CLUS_3               6                53
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED        3      4      3      0
  3P LOSS WILD-TYPE      8     18     20     18
D45V11, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               3                 8
  CLUS_2               4                18
  CLUS_3               3                20
  CLUS_4               0                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P LOSS MUTATED        1      2      4      0      3
  3P LOSS WILD-TYPE      8     18      9     10     19
D45V12, multiclass

Clustering(46) Variable = 3Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        1      2      0
  3Q LOSS WILD-TYPE     24     20     22
D46V1, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               1                24
  CLUS_2               2                20
  CLUS_3               0                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        0      2      1
  3Q LOSS WILD-TYPE     24     27     15
D46V2, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               0                24
  CLUS_2               2                27
  CLUS_3               1                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3Q LOSS MUTATED        0      0      4      5      1      0
  3Q LOSS WILD-TYPE     10     34     38     25     23     22
D46V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        1      2      4
  3Q LOSS WILD-TYPE     23     37     26
D46V4, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               1                23
  CLUS_2               2                37
  CLUS_3               4                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        4      2      2
  3Q LOSS WILD-TYPE     29     38     51
D46V5, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               4                29
  CLUS_2               2                38
  CLUS_3               2                51
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q LOSS MUTATED        1      2      2      2      1
  3Q LOSS WILD-TYPE      5     15     30     24     44
D46V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        3      4      2
  3Q LOSS WILD-TYPE     55     27     63
D46V7, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               3                55
  CLUS_2               4                27
  CLUS_3               2                63
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        2      2      2      3
  3Q LOSS WILD-TYPE     64      5     48     28
D46V8, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               2                64
  CLUS_2               2                 5
  CLUS_3               2                48
  CLUS_4               3                28
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q LOSS MUTATED        2      4      1      1      2
  3Q LOSS WILD-TYPE     16     38     16      7     54
D46V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        3      3      4
  3Q LOSS WILD-TYPE     16     60     55
D46V10, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               3                16
  CLUS_2               3                60
  CLUS_3               4                55
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        2      3      2      0
  3Q LOSS WILD-TYPE      9     19     21     18
D46V11, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               2                 9
  CLUS_2               3                19
  CLUS_3               2                21
  CLUS_4               0                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q LOSS MUTATED        0      2      3      0      2
  3Q LOSS WILD-TYPE      9     18     10     10     20
D46V12, multiclass

Clustering(47) Variable = 4P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        7      9      8
  4P LOSS WILD-TYPE     18     13     14
D47V1, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               7                18
  CLUS_2               9                13
  CLUS_3               8                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        6     14      4
  4P LOSS WILD-TYPE     18     15     12
D47V2, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               6                18
  CLUS_2              14                15
  CLUS_3               4                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4P LOSS MUTATED        4     13      5     15     17      4
  4P LOSS WILD-TYPE      6     21     37     15      7     18
D47V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       15     11      8
  4P LOSS WILD-TYPE      9     28     22
D47V4, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              15                 9
  CLUS_2              11                28
  CLUS_3               8                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       11     14     17
  4P LOSS WILD-TYPE     22     26     36
D47V5, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              11                22
  CLUS_2              14                26
  CLUS_3              17                36
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P LOSS MUTATED        0      5     13     10     14
  4P LOSS WILD-TYPE      6     12     19     16     31
D47V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       21     10     24
  4P LOSS WILD-TYPE     37     21     41
D47V7, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              21                37
  CLUS_2              10                21
  CLUS_3              24                41
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED       22      3     19     11
  4P LOSS WILD-TYPE     44      4     31     20
D47V8, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              22                44
  CLUS_2               3                 4
  CLUS_3              19                31
  CLUS_4              11                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P LOSS MUTATED        8     16      7      3     20
  4P LOSS WILD-TYPE     10     26     10      5     36
D47V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       13     20     21
  4P LOSS WILD-TYPE      6     43     38
D47V10, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              13                 6
  CLUS_2              20                43
  CLUS_3              21                38
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED        5      8      8     10
  4P LOSS WILD-TYPE      6     14     15      8
D47V11, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               5                 6
  CLUS_2               8                14
  CLUS_3               8                15
  CLUS_4              10                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P LOSS MUTATED        2      7      9      4      9
  4P LOSS WILD-TYPE      7     13      4      6     13
D47V12, multiclass

Clustering(48) Variable = 4Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        8      9      8
  4Q LOSS WILD-TYPE     17     13     14
D48V1, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               8                17
  CLUS_2               9                13
  CLUS_3               8                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        7     14      4
  4Q LOSS WILD-TYPE     17     15     12
D48V2, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               7                17
  CLUS_2              14                15
  CLUS_3               4                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4Q LOSS MUTATED        5     16      6     17     17      4
  4Q LOSS WILD-TYPE      5     18     36     13      7     18
D48V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       16     17      7
  4Q LOSS WILD-TYPE      8     22     23
D48V4, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              16                 8
  CLUS_2              17                22
  CLUS_3               7                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       13     16     18
  4Q LOSS WILD-TYPE     20     24     35
D48V5, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              13                20
  CLUS_2              16                24
  CLUS_3              18                35
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q LOSS MUTATED        1      5     15     10     16
  4Q LOSS WILD-TYPE      5     12     17     16     29
D48V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       25     12     26
  4Q LOSS WILD-TYPE     33     19     39
D48V7, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              25                33
  CLUS_2              12                19
  CLUS_3              26                39
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED       24      3     22     14
  4Q LOSS WILD-TYPE     42      4     28     17
D48V8, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              24                42
  CLUS_2               3                 4
  CLUS_3              22                28
  CLUS_4              14                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q LOSS MUTATED        9     20      6      4     22
  4Q LOSS WILD-TYPE      9     22     11      4     34
D48V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       12     22     27
  4Q LOSS WILD-TYPE      7     41     32
D48V10, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              12                 7
  CLUS_2              22                41
  CLUS_3              27                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED        5     10     11     10
  4Q LOSS WILD-TYPE      6     12     12      8
D48V11, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               5                 6
  CLUS_2              10                12
  CLUS_3              11                12
  CLUS_4              10                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q LOSS MUTATED        3      9      8      4     12
  4Q LOSS WILD-TYPE      6     11      5      6     10
D48V12, multiclass

Clustering(49) Variable = 5P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        1      4      4
  5P LOSS WILD-TYPE     24     18     18
D49V1, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               1                24
  CLUS_2               4                18
  CLUS_3               4                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        1      5      3
  5P LOSS WILD-TYPE     23     24     13
D49V2, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               1                23
  CLUS_2               5                24
  CLUS_3               3                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5P LOSS MUTATED        3      4      4      7      6      2
  5P LOSS WILD-TYPE      7     30     38     23     18     20
D49V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        5      5      7
  5P LOSS WILD-TYPE     19     34     23
D49V4, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               5                19
  CLUS_2               5                34
  CLUS_3               7                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        3      7     10
  5P LOSS WILD-TYPE     30     33     43
D49V5, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               3                30
  CLUS_2               7                33
  CLUS_3              10                43
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P LOSS MUTATED        0      0      7      5      8
  5P LOSS WILD-TYPE      6     17     25     21     37
D49V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        9      6      9
  5P LOSS WILD-TYPE     49     25     56
D49V7, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               9                49
  CLUS_2               6                25
  CLUS_3               9                56
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        9      0      8      7
  5P LOSS WILD-TYPE     57      7     42     24
D49V8, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               9                57
  CLUS_2               0                 7
  CLUS_3               8                42
  CLUS_4               7                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P LOSS MUTATED        2      7      4      0      9
  5P LOSS WILD-TYPE     16     35     13      8     47
D49V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        6      8      8
  5P LOSS WILD-TYPE     13     55     51
D49V10, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               6                13
  CLUS_2               8                55
  CLUS_3               8                51
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        4      2      4      3
  5P LOSS WILD-TYPE      7     20     19     15
D49V11, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               4                 7
  CLUS_2               2                20
  CLUS_3               4                19
  CLUS_4               3                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P LOSS MUTATED        2      1      4      2      4
  5P LOSS WILD-TYPE      7     19      9      8     18
D49V12, multiclass

Clustering(50) Variable = 5Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        2      6      7
  5Q LOSS WILD-TYPE     23     16     15
D50V1, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               2                23
  CLUS_2               6                16
  CLUS_3               7                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        2     11      2
  5Q LOSS WILD-TYPE     22     18     14
D50V2, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               2                22
  CLUS_2              11                18
  CLUS_3               2                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5Q LOSS MUTATED        2      9      3     12     10      4
  5Q LOSS WILD-TYPE      8     25     39     18     14     18
D50V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        9      9      8
  5Q LOSS WILD-TYPE     15     30     22
D50V4, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               9                15
  CLUS_2               9                30
  CLUS_3               8                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        8     10     14
  5Q LOSS WILD-TYPE     25     30     39
D50V5, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               8                25
  CLUS_2              10                30
  CLUS_3              14                39
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q LOSS MUTATED        1      3      9      7     12
  5Q LOSS WILD-TYPE      5     14     23     19     33
D50V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       14      7     16
  5Q LOSS WILD-TYPE     44     24     49
D50V7, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              14                44
  CLUS_2               7                24
  CLUS_3              16                49
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED       15      2     12      8
  5Q LOSS WILD-TYPE     51      5     38     23
D50V8, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              15                51
  CLUS_2               2                 5
  CLUS_3              12                38
  CLUS_4               8                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q LOSS MUTATED        5     11      6      2     14
  5Q LOSS WILD-TYPE     13     31     11      6     42
D50V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        9     13     16
  5Q LOSS WILD-TYPE     10     50     43
D50V10, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               9                10
  CLUS_2              13                50
  CLUS_3              16                43
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED        4      5      6      7
  5Q LOSS WILD-TYPE      7     17     17     11
D50V11, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               4                 7
  CLUS_2               5                17
  CLUS_3               6                17
  CLUS_4               7                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q LOSS MUTATED        2      4      5      4      7
  5Q LOSS WILD-TYPE      7     16      8      6     15
D50V12, multiclass

Clustering(51) Variable = 6P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        4      2      1
  6P LOSS WILD-TYPE     21     20     21
D51V1, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               4                21
  CLUS_2               2                20
  CLUS_3               1                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        3      2      2
  6P LOSS WILD-TYPE     21     27     14
D51V2, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               3                21
  CLUS_2               2                27
  CLUS_3               2                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6P LOSS MUTATED        0      3      3      4      1      2
  6P LOSS WILD-TYPE     10     31     39     26     23     20
D51V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        0      2      4
  6P LOSS WILD-TYPE     24     37     26
D51V4, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               0                24
  CLUS_2               2                37
  CLUS_3               4                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        3      1      6
  6P LOSS WILD-TYPE     30     39     47
D51V5, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               3                30
  CLUS_2               1                39
  CLUS_3               6                47
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P LOSS MUTATED        1      3      1      2      3
  6P LOSS WILD-TYPE      5     14     31     24     42
D51V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        5      2      6
  6P LOSS WILD-TYPE     53     29     59
D51V7, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               5                53
  CLUS_2               2                29
  CLUS_3               6                59
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED        6      1      5      1
  6P LOSS WILD-TYPE     60      6     45     30
D51V8, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               6                60
  CLUS_2               1                 6
  CLUS_3               5                45
  CLUS_4               1                30
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P LOSS MUTATED        2      3      0      0      7
  6P LOSS WILD-TYPE     16     39     17      8     49
D51V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        0      7      5
  6P LOSS WILD-TYPE     19     56     54
D51V10, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               0                19
  CLUS_2               7                56
  CLUS_3               5                54
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED        1      3      1      0
  6P LOSS WILD-TYPE     10     19     22     18
D51V11, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               1                10
  CLUS_2               3                19
  CLUS_3               1                22
  CLUS_4               0                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P LOSS MUTATED        1      3      0      0      1
  6P LOSS WILD-TYPE      8     17     13     10     21
D51V12, multiclass

Clustering(52) Variable = 6Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        4      7      2
  6Q LOSS WILD-TYPE     21     15     20
D52V1, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               4                21
  CLUS_2               7                15
  CLUS_3               2                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        3      4      6
  6Q LOSS WILD-TYPE     21     25     10
D52V2, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               3                21
  CLUS_2               4                25
  CLUS_3               6                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6Q LOSS MUTATED        0      3      6      9      2      2
  6Q LOSS WILD-TYPE     10     31     36     21     22     20
D52V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        1      4      4
  6Q LOSS WILD-TYPE     23     35     26
D52V4, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               1                23
  CLUS_2               4                35
  CLUS_3               4                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        5      3      9
  6Q LOSS WILD-TYPE     28     37     44
D52V5, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               5                28
  CLUS_2               3                37
  CLUS_3               9                44
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q LOSS MUTATED        1      3      3      4      6
  6Q LOSS WILD-TYPE      5     14     29     22     39
D52V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        4      5     12
  6Q LOSS WILD-TYPE     54     26     53
D52V7, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               4                54
  CLUS_2               5                26
  CLUS_3              12                53
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED       11      2      4      4
  6Q LOSS WILD-TYPE     55      5     46     27
D52V8, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              11                55
  CLUS_2               2                 5
  CLUS_3               4                46
  CLUS_4               4                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q LOSS MUTATED        2      6      0      1     12
  6Q LOSS WILD-TYPE     16     36     17      7     44
D52V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        1     13      7
  6Q LOSS WILD-TYPE     18     50     52
D52V10, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               1                18
  CLUS_2              13                50
  CLUS_3               7                52
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED        1      2      5      0
  6Q LOSS WILD-TYPE     10     20     18     18
D52V11, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               1                10
  CLUS_2               2                20
  CLUS_3               5                18
  CLUS_4               0                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q LOSS MUTATED        1      2      1      0      4
  6Q LOSS WILD-TYPE      8     18     12     10     18
D52V12, multiclass

Clustering(53) Variable = 7Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        1      0      0
  7Q LOSS WILD-TYPE     24     22     22
D53V1, multiclass
[1] "Remove cluster labels:" "7Q LOSS MUTATED"       
clus
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                1                68 
       TCGA-AF-2689        TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AF-3913        TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3728        TCGA-AG-3878        TCGA-AG-3881 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885        TCGA-AG-3887 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901        TCGA-AG-3902 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4005 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015        TCGA-AG-A002 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01J 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-A01L        TCGA-AG-A01N        TCGA-AG-A023        TCGA-AG-A025 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        1      0      0
  7Q LOSS WILD-TYPE     23     29     16
D53V2, multiclass
[1] "Remove cluster labels:" "7Q LOSS MUTATED"       
clus
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                1                68 
       TCGA-AF-2689        TCGA-AF-2691        TCGA-AF-2692        TCGA-AF-3400 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AF-3913        TCGA-AG-3574        TCGA-AG-3575        TCGA-AG-3578 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-3580        TCGA-AG-3581        TCGA-AG-3582        TCGA-AG-3583 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-3584        TCGA-AG-3586        TCGA-AG-3587        TCGA-AG-3593 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-3594        TCGA-AG-3598        TCGA-AG-3599        TCGA-AG-3600 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-3601        TCGA-AG-3602        TCGA-AG-3605        TCGA-AG-3608 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-3609        TCGA-AG-3611        TCGA-AG-3612        TCGA-AG-3726 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-3727        TCGA-AG-3728        TCGA-AG-3878        TCGA-AG-3881 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-3882        TCGA-AG-3883        TCGA-AG-3885        TCGA-AG-3887 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-3890        TCGA-AG-3892        TCGA-AG-3893        TCGA-AG-3894 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-3896        TCGA-AG-3898        TCGA-AG-3901        TCGA-AG-3902 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-3909        TCGA-AG-3999        TCGA-AG-4001        TCGA-AG-4005 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-4007        TCGA-AG-4008        TCGA-AG-4015        TCGA-AG-A002 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-A00C        TCGA-AG-A00H        TCGA-AG-A00Y        TCGA-AG-A011 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-A014        TCGA-AG-A015        TCGA-AG-A016        TCGA-AG-A01J 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-A01L        TCGA-AG-A01N        TCGA-AG-A023        TCGA-AG-A025 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-A026        TCGA-AG-A02G        TCGA-AG-A02X        TCGA-AG-A032 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7Q LOSS MUTATED        0      0      0      2      0      1
  7Q LOSS WILD-TYPE     10     34     42     28     24     21
D53V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        0      1      1
  7Q LOSS WILD-TYPE     24     38     29
D53V4, multiclass
[1] "Remove cluster labels:" "7Q LOSS MUTATED"       
clus
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                2                91 
       TCGA-AF-2687        TCGA-AF-2690        TCGA-AF-2693        TCGA-AF-3911 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-6136        TCGA-AF-6655        TCGA-AF-6672 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-3592        TCGA-AG-3725        TCGA-AG-3731        TCGA-AG-3732 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-3742        TCGA-AG-4021        TCGA-AG-4022        TCGA-AG-A01W 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-A01Y        TCGA-AG-A020        TCGA-AG-A026        TCGA-AG-A02N 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6643        TCGA-AH-6644 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AH-6897        TCGA-AH-6903        TCGA-BM-6198        TCGA-CI-6619 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CI-6620        TCGA-CI-6621        TCGA-CI-6622        TCGA-CI-6623 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CI-6624        TCGA-CL-4957        TCGA-CL-5917        TCGA-CL-5918 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DC-4745        TCGA-DC-4749        TCGA-DC-5337        TCGA-DC-5869 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DC-6154        TCGA-DC-6155        TCGA-DC-6156        TCGA-DC-6157 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DC-6158        TCGA-DC-6160        TCGA-DC-6681        TCGA-DC-6683 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DT-5265        TCGA-DY-A0XA        TCGA-DY-A1DC        TCGA-DY-A1DD 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DY-A1DE        TCGA-DY-A1DF        TCGA-DY-A1DG        TCGA-DY-A1H8 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EF-5830        TCGA-EF-5831        TCGA-EI-6506        TCGA-EI-6507 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EI-6508        TCGA-EI-6509        TCGA-EI-6510        TCGA-EI-6511 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EI-6512        TCGA-EI-6513        TCGA-EI-6514        TCGA-EI-6881 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EI-6882        TCGA-EI-6883        TCGA-EI-6884        TCGA-EI-6885 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EI-6917        TCGA-EI-7002        TCGA-EI-7004        TCGA-F5-6464 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702        TCGA-F5-6810 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-F5-6811        TCGA-F5-6812        TCGA-F5-6813        TCGA-F5-6814 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-F5-6861        TCGA-F5-6863        TCGA-F5-6864        TCGA-G5-6233 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-G5-6235        TCGA-G5-6572        TCGA-G5-6641 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        0      1      2
  7Q LOSS WILD-TYPE     33     39     51
D53V5, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               0                33
  CLUS_2               1                39
  CLUS_3               2                51
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q LOSS MUTATED        0      0      0      0      3
  7Q LOSS WILD-TYPE      6     17     32     26     42
D53V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        1      1      1
  7Q LOSS WILD-TYPE     57     30     64
D53V7, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               1                57
  CLUS_2               1                30
  CLUS_3               1                64
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED        1      0      1      1
  7Q LOSS WILD-TYPE     65      7     49     30
D53V8, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               1                65
  CLUS_2               0                 7
  CLUS_3               1                49
  CLUS_4               1                30
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q LOSS MUTATED        0      2      0      0      1
  7Q LOSS WILD-TYPE     18     40     17      8     55
D53V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        0      1      2
  7Q LOSS WILD-TYPE     19     62     57
D53V10, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               0                19
  CLUS_2               1                62
  CLUS_3               2                57
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED        1      0      1      0
  7Q LOSS WILD-TYPE     10     22     22     18
D53V11, multiclass
[1] "Remove cluster labels:" "7Q LOSS MUTATED"       
clus
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                2                72 
       TCGA-AF-2687        TCGA-AF-2690        TCGA-AF-2693        TCGA-AF-3911 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-5654        TCGA-AF-6136        TCGA-AF-6655 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AF-6672        TCGA-AG-3592        TCGA-AG-3725        TCGA-AG-3731 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-3732        TCGA-AG-3742        TCGA-AG-4021        TCGA-AG-4022 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6643        TCGA-AH-6644 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BM-6198        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CI-6622        TCGA-CI-6623        TCGA-CI-6624        TCGA-CL-4957 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CL-5917        TCGA-CL-5918        TCGA-DC-4745        TCGA-DC-4749 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6155        TCGA-DC-6156 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6160        TCGA-DC-6681 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DC-6683        TCGA-DT-5265        TCGA-DY-A0XA        TCGA-DY-A1DC 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DE        TCGA-DY-A1DF        TCGA-DY-A1DG 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EF-5830        TCGA-EF-5831        TCGA-EI-6506 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EI-6507        TCGA-EI-6508        TCGA-EI-6509        TCGA-EI-6510 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EI-6511        TCGA-EI-6512        TCGA-EI-6513        TCGA-EI-6514 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-F5-6810        TCGA-F5-6811        TCGA-F5-6812        TCGA-F5-6813 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-G5-6233        TCGA-G5-6235        TCGA-G5-6572        TCGA-G5-6641 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q LOSS MUTATED        1      0      0      0      1
  7Q LOSS WILD-TYPE      8     20     13     10     21
D53V12, multiclass
[1] "Remove cluster labels:" "7Q LOSS MUTATED"       
clus
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                2                72 
       TCGA-AF-2687        TCGA-AF-2690        TCGA-AF-2693        TCGA-AF-3911 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AF-4110        TCGA-AF-5654        TCGA-AF-6136        TCGA-AF-6655 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AF-6672        TCGA-AG-3592        TCGA-AG-3725        TCGA-AG-3731 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AG-3732        TCGA-AG-3742        TCGA-AG-4021        TCGA-AG-4022 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-AH-6544        TCGA-AH-6547        TCGA-AH-6643        TCGA-AH-6644 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BM-6198        TCGA-CI-6619        TCGA-CI-6620        TCGA-CI-6621 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CI-6622        TCGA-CI-6623        TCGA-CI-6624        TCGA-CL-4957 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CL-5917        TCGA-CL-5918        TCGA-DC-4745        TCGA-DC-4749 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DC-5337        TCGA-DC-5869        TCGA-DC-6155        TCGA-DC-6156 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DC-6157        TCGA-DC-6158        TCGA-DC-6160        TCGA-DC-6681 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DC-6683        TCGA-DT-5265        TCGA-DY-A0XA        TCGA-DY-A1DC 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DY-A1DD        TCGA-DY-A1DE        TCGA-DY-A1DF        TCGA-DY-A1DG 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DY-A1H8        TCGA-EF-5830        TCGA-EF-5831        TCGA-EI-6506 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EI-6507        TCGA-EI-6508        TCGA-EI-6509        TCGA-EI-6510 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EI-6511        TCGA-EI-6512        TCGA-EI-6513        TCGA-EI-6514 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-F5-6464        TCGA-F5-6465        TCGA-F5-6571        TCGA-F5-6702 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-F5-6810        TCGA-F5-6811        TCGA-F5-6812        TCGA-F5-6813 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-G5-6233        TCGA-G5-6235        TCGA-G5-6572        TCGA-G5-6641 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 

Clustering(54) Variable = 8P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       12      9     15
  8P LOSS WILD-TYPE     13     13      7
D54V1, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              12                13
  CLUS_2               9                13
  CLUS_3              15                 7
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       13     16      7
  8P LOSS WILD-TYPE     11     13      9
D54V2, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              13                11
  CLUS_2              16                13
  CLUS_3               7                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8P LOSS MUTATED        4     21     10     16     13     11
  8P LOSS WILD-TYPE      6     13     32     14     11     11
D54V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       12     17     11
  8P LOSS WILD-TYPE     12     22     19
D54V4, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              12                12
  CLUS_2              17                22
  CLUS_3              11                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       14     16     26
  8P LOSS WILD-TYPE     19     24     27
D54V5, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              14                19
  CLUS_2              16                24
  CLUS_3              26                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P LOSS MUTATED        1      6     13     13     23
  8P LOSS WILD-TYPE      5     11     19     13     22
D54V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       25     11     35
  8P LOSS WILD-TYPE     33     20     30
D54V7, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              25                33
  CLUS_2              11                20
  CLUS_3              35                30
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED       35      1     22     13
  8P LOSS WILD-TYPE     31      6     28     18
D54V8, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              35                31
  CLUS_2               1                 6
  CLUS_3              22                28
  CLUS_4              13                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P LOSS MUTATED        9     21      6      3     27
  8P LOSS WILD-TYPE      9     21     11      5     29
D54V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        7     29     30
  8P LOSS WILD-TYPE     12     34     29
D54V10, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               7                12
  CLUS_2              29                34
  CLUS_3              30                29
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED        1      9     12     12
  8P LOSS WILD-TYPE     10     13     11      6
D54V11, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               1                10
  CLUS_2               9                13
  CLUS_3              12                11
  CLUS_4              12                 6
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P LOSS MUTATED        2     11      4      6     11
  8P LOSS WILD-TYPE      7      9      9      4     11
D54V12, multiclass

Clustering(55) Variable = 8Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        4      3      0
  8Q LOSS WILD-TYPE     21     19     22
D55V1, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               4                21
  CLUS_2               3                19
  CLUS_3               0                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        4      1      2
  8Q LOSS WILD-TYPE     20     28     14
D55V2, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               4                20
  CLUS_2               1                28
  CLUS_3               2                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8Q LOSS MUTATED        1      3      0      4      2      1
  8Q LOSS WILD-TYPE      9     31     42     26     22     21
D55V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        1      2      1
  8Q LOSS WILD-TYPE     23     37     29
D55V4, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               1                23
  CLUS_2               2                37
  CLUS_3               1                29
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        1      2      4
  8Q LOSS WILD-TYPE     32     38     49
D55V5, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               1                32
  CLUS_2               2                38
  CLUS_3               4                49
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q LOSS MUTATED        0      0      2      1      4
  8Q LOSS WILD-TYPE      6     17     30     25     41
D55V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        3      1      6
  8Q LOSS WILD-TYPE     55     30     59
D55V7, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               3                55
  CLUS_2               1                30
  CLUS_3               6                59
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        7      0      3      0
  8Q LOSS WILD-TYPE     59      7     47     31
D55V8, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               7                59
  CLUS_2               0                 7
  CLUS_3               3                47
  CLUS_4               0                31
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q LOSS MUTATED        1      2      1      1      5
  8Q LOSS WILD-TYPE     17     40     16      7     51
D55V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        0      6      4
  8Q LOSS WILD-TYPE     19     57     55
D55V10, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               0                19
  CLUS_2               6                57
  CLUS_3               4                55
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        0      1      1      2
  8Q LOSS WILD-TYPE     11     21     22     16
D55V11, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               0                11
  CLUS_2               1                21
  CLUS_3               1                22
  CLUS_4               2                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q LOSS MUTATED        0      1      0      1      2
  8Q LOSS WILD-TYPE      9     19     13      9     20
D55V12, multiclass

Clustering(56) Variable = 9P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        5      2      3
  9P LOSS WILD-TYPE     20     20     19
D56V1, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               5                20
  CLUS_2               2                20
  CLUS_3               3                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        5      3      2
  9P LOSS WILD-TYPE     19     26     14
D56V2, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               5                19
  CLUS_2               3                26
  CLUS_3               2                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9P LOSS MUTATED        2      7      3      6      1      3
  9P LOSS WILD-TYPE      8     27     39     24     23     19
D56V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        5      3      5
  9P LOSS WILD-TYPE     19     36     25
D56V4, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               5                19
  CLUS_2               3                36
  CLUS_3               5                25
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        3      6      7
  9P LOSS WILD-TYPE     30     34     46
D56V5, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               3                30
  CLUS_2               6                34
  CLUS_3               7                46
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P LOSS MUTATED        0      0      6      4      6
  9P LOSS WILD-TYPE      6     17     26     22     39
D56V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        7      4      9
  9P LOSS WILD-TYPE     51     27     56
D56V7, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               7                51
  CLUS_2               4                27
  CLUS_3               9                56
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED       10      0      5      5
  9P LOSS WILD-TYPE     56      7     45     26
D56V8, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              10                56
  CLUS_2               0                 7
  CLUS_3               5                45
  CLUS_4               5                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P LOSS MUTATED        2      8      2      3      6
  9P LOSS WILD-TYPE     16     34     15      5     50
D56V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        6      9      6
  9P LOSS WILD-TYPE     13     54     53
D56V10, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               6                13
  CLUS_2               9                54
  CLUS_3               6                53
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED        4      2      2      4
  9P LOSS WILD-TYPE      7     20     21     14
D56V11, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               4                 7
  CLUS_2               2                20
  CLUS_3               2                21
  CLUS_4               4                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P LOSS MUTATED        2      1      6      1      2
  9P LOSS WILD-TYPE      7     19      7      9     20
D56V12, multiclass

Clustering(57) Variable = 9Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        5      1      5
  9Q LOSS WILD-TYPE     20     21     17
D57V1, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               5                20
  CLUS_2               1                21
  CLUS_3               5                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        5      5      1
  9Q LOSS WILD-TYPE     19     24     15
D57V2, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               5                19
  CLUS_2               5                24
  CLUS_3               1                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9Q LOSS MUTATED        2      8      3      4      2      3
  9Q LOSS WILD-TYPE      8     26     39     26     22     19
D57V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        6      3      3
  9Q LOSS WILD-TYPE     18     36     27
D57V4, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               6                18
  CLUS_2               3                36
  CLUS_3               3                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        4      6      6
  9Q LOSS WILD-TYPE     29     34     47
D57V5, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               4                29
  CLUS_2               6                34
  CLUS_3               6                47
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q LOSS MUTATED        0      1      6      4      5
  9Q LOSS WILD-TYPE      6     16     26     22     40
D57V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        7      4     10
  9Q LOSS WILD-TYPE     51     27     55
D57V7, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               7                51
  CLUS_2               4                27
  CLUS_3              10                55
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED       11      0      5      5
  9Q LOSS WILD-TYPE     55      7     45     26
D57V8, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              11                55
  CLUS_2               0                 7
  CLUS_3               5                45
  CLUS_4               5                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q LOSS MUTATED        3      7      1      4      6
  9Q LOSS WILD-TYPE     15     35     16      4     50
D57V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        7      9      5
  9Q LOSS WILD-TYPE     12     54     54
D57V10, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               7                12
  CLUS_2               9                54
  CLUS_3               5                54
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED        4      2      2      3
  9Q LOSS WILD-TYPE      7     20     21     15
D57V11, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               4                 7
  CLUS_2               2                20
  CLUS_3               2                21
  CLUS_4               3                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q LOSS MUTATED        2      1      6      1      1
  9Q LOSS WILD-TYPE      7     19      7      9     21
D57V12, multiclass

Clustering(58) Variable = 10P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        7      2      2
  10P LOSS WILD-TYPE     18     20     20
D58V1, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                7                 18
  CLUS_2                2                 20
  CLUS_3                2                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        7      3      1
  10P LOSS WILD-TYPE     17     26     15
D58V2, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                7                 17
  CLUS_2                3                 26
  CLUS_3                1                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10P LOSS MUTATED        3      6      5      7      6      5
  10P LOSS WILD-TYPE      7     28     37     23     18     17
D58V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       10      6      5
  10P LOSS WILD-TYPE     14     33     25
D58V4, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               10                 14
  CLUS_2                6                 33
  CLUS_3                5                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        4      6     15
  10P LOSS WILD-TYPE     29     34     38
D58V5, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                4                 29
  CLUS_2                6                 34
  CLUS_3               15                 38
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P LOSS MUTATED        2      4      4      2     13
  10P LOSS WILD-TYPE      4     13     28     24     32
D58V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       14      4     12
  10P LOSS WILD-TYPE     44     27     53
D58V7, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               14                 44
  CLUS_2                4                 27
  CLUS_3               12                 53
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED       11      1     14      4
  10P LOSS WILD-TYPE     55      6     36     27
D58V8, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               11                 55
  CLUS_2                1                  6
  CLUS_3               14                 36
  CLUS_4                4                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P LOSS MUTATED        4     10      3      2      9
  10P LOSS WILD-TYPE     14     32     14      6     47
D58V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        6     11     11
  10P LOSS WILD-TYPE     13     52     48
D58V10, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                6                 13
  CLUS_2               11                 52
  CLUS_3               11                 48
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED        2      4      6      5
  10P LOSS WILD-TYPE      9     18     17     13
D58V11, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                2                  9
  CLUS_2                4                 18
  CLUS_3                6                 17
  CLUS_4                5                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P LOSS MUTATED        1      3      6      3      4
  10P LOSS WILD-TYPE      8     17      7      7     18
D58V12, multiclass

Clustering(59) Variable = 10Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        8      5      2
  10Q LOSS WILD-TYPE     17     17     20
D59V1, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                8                 17
  CLUS_2                5                 17
  CLUS_3                2                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        7      5      3
  10Q LOSS WILD-TYPE     17     24     13
D59V2, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                7                 17
  CLUS_2                5                 24
  CLUS_3                3                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10Q LOSS MUTATED        4      7      4     10      7      5
  10Q LOSS WILD-TYPE      6     27     38     20     17     17
D59V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       10      7      5
  10Q LOSS WILD-TYPE     14     32     25
D59V4, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               10                 14
  CLUS_2                7                 32
  CLUS_3                5                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        6      6     17
  10Q LOSS WILD-TYPE     27     34     36
D59V5, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                6                 27
  CLUS_2                6                 34
  CLUS_3               17                 36
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q LOSS MUTATED        4      3      5      3     14
  10Q LOSS WILD-TYPE      2     14     27     23     31
D59V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       16      3     16
  10Q LOSS WILD-TYPE     42     28     49
D59V7, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               16                 42
  CLUS_2                3                 28
  CLUS_3               16                 49
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED       15      1     16      3
  10Q LOSS WILD-TYPE     51      6     34     28
D59V8, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               15                 51
  CLUS_2                1                  6
  CLUS_3               16                 34
  CLUS_4                3                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q LOSS MUTATED        6     10      2      2     13
  10Q LOSS WILD-TYPE     12     32     15      6     43
D59V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        6     15     12
  10Q LOSS WILD-TYPE     13     48     47
D59V10, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                6                 13
  CLUS_2               15                 48
  CLUS_3               12                 47
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED        2      7      5      4
  10Q LOSS WILD-TYPE      9     15     18     14
D59V11, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                2                  9
  CLUS_2                7                 15
  CLUS_3                5                 18
  CLUS_4                4                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q LOSS MUTATED        1      5      6      3      3
  10Q LOSS WILD-TYPE      8     15      7      7     19
D59V12, multiclass

Clustering(60) Variable = 11P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        4      5      1
  11P LOSS WILD-TYPE     21     17     21
D60V1, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                4                 21
  CLUS_2                5                 17
  CLUS_3                1                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        3      3      4
  11P LOSS WILD-TYPE     21     26     12
D60V2, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                3                 26
  CLUS_3                4                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11P LOSS MUTATED        2      0      5      7      8      2
  11P LOSS WILD-TYPE      8     34     37     23     16     20
D60V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        1      9      4
  11P LOSS WILD-TYPE     23     30     26
D60V4, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                1                 23
  CLUS_2                9                 30
  CLUS_3                4                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        7      3     10
  11P LOSS WILD-TYPE     26     37     43
D60V5, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                7                 26
  CLUS_2                3                 37
  CLUS_3               10                 43
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P LOSS MUTATED        3      3      3      4      7
  11P LOSS WILD-TYPE      3     14     29     22     38
D60V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        7      6     10
  11P LOSS WILD-TYPE     51     25     55
D60V7, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                7                 51
  CLUS_2                6                 25
  CLUS_3               10                 55
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED        9      1      7      6
  11P LOSS WILD-TYPE     57      6     43     25
D60V8, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                9                 57
  CLUS_2                1                  6
  CLUS_3                7                 43
  CLUS_4                6                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P LOSS MUTATED        3      7      2      1     10
  11P LOSS WILD-TYPE     15     35     15      7     46
D60V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        1     11     11
  11P LOSS WILD-TYPE     18     52     48
D60V10, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                1                 18
  CLUS_2               11                 52
  CLUS_3               11                 48
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED        0      4      5      3
  11P LOSS WILD-TYPE     11     18     18     15
D60V11, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                4                 18
  CLUS_3                5                 18
  CLUS_4                3                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P LOSS MUTATED        0      5      0      2      5
  11P LOSS WILD-TYPE      9     15     13      8     17
D60V12, multiclass

Clustering(61) Variable = 11Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        4      7      1
  11Q LOSS WILD-TYPE     21     15     21
D61V1, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                4                 21
  CLUS_2                7                 15
  CLUS_3                1                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        3      3      6
  11Q LOSS WILD-TYPE     21     26     10
D61V2, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                3                 26
  CLUS_3                6                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11Q LOSS MUTATED        2      0      5     11      8      4
  11Q LOSS WILD-TYPE      8     34     37     19     16     18
D61V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        1     12      5
  11Q LOSS WILD-TYPE     23     27     25
D61V4, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                1                 23
  CLUS_2               12                 27
  CLUS_3                5                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        6      5     11
  11Q LOSS WILD-TYPE     27     35     42
D61V5, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                6                 27
  CLUS_2                5                 35
  CLUS_3               11                 42
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q LOSS MUTATED        3      2      5      5      7
  11Q LOSS WILD-TYPE      3     15     27     21     38
D61V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        8     10     11
  11Q LOSS WILD-TYPE     50     21     54
D61V7, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                8                 50
  CLUS_2               10                 21
  CLUS_3               11                 54
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED       11      2      6     10
  11Q LOSS WILD-TYPE     55      5     44     21
D61V8, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               11                 55
  CLUS_2                2                  5
  CLUS_3                6                 44
  CLUS_4               10                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q LOSS MUTATED        2     13      1      1     12
  11Q LOSS WILD-TYPE     16     29     16      7     44
D61V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        1     13     15
  11Q LOSS WILD-TYPE     18     50     44
D61V10, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                1                 18
  CLUS_2               13                 50
  CLUS_3               15                 44
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED        1      3      8      4
  11Q LOSS WILD-TYPE     10     19     15     14
D61V11, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                3                 19
  CLUS_3                8                 15
  CLUS_4                4                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q LOSS MUTATED        2      4      0      2      8
  11Q LOSS WILD-TYPE      7     16     13      8     14
D61V12, multiclass

Clustering(62) Variable = 12P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        1      3      3
  12P LOSS WILD-TYPE     24     19     19
D62V1, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                1                 24
  CLUS_2                3                 19
  CLUS_3                3                 19
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        1      4      2
  12P LOSS WILD-TYPE     23     25     14
D62V2, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                1                 23
  CLUS_2                4                 25
  CLUS_3                2                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12P LOSS MUTATED        2      5      3      2      7      3
  12P LOSS WILD-TYPE      8     29     39     28     17     19
D62V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        2      6      7
  12P LOSS WILD-TYPE     22     33     23
D62V4, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                2                 22
  CLUS_2                6                 33
  CLUS_3                7                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        4      5     10
  12P LOSS WILD-TYPE     29     35     43
D62V5, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                4                 29
  CLUS_2                5                 35
  CLUS_3               10                 43
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P LOSS MUTATED        3      1      4      4      7
  12P LOSS WILD-TYPE      3     16     28     22     38
D62V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        8      4      8
  12P LOSS WILD-TYPE     50     27     57
D62V7, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                8                 50
  CLUS_2                4                 27
  CLUS_3                8                 57
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED        7      0      8      5
  12P LOSS WILD-TYPE     59      7     42     26
D62V8, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                7                 59
  CLUS_2                0                  7
  CLUS_3                8                 42
  CLUS_4                5                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P LOSS MUTATED        5      7      2      0      7
  12P LOSS WILD-TYPE     13     35     15      8     49
D62V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        4      7     10
  12P LOSS WILD-TYPE     15     56     49
D62V10, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                4                 15
  CLUS_2                7                 56
  CLUS_3               10                 49
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED        0      6      3      4
  12P LOSS WILD-TYPE     11     16     20     14
D62V11, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                6                 16
  CLUS_3                3                 20
  CLUS_4                4                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P LOSS MUTATED        0      4      3      2      4
  12P LOSS WILD-TYPE      9     16     10      8     18
D62V12, multiclass

Clustering(63) Variable = 12Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        1      2      4
  12Q LOSS WILD-TYPE     24     20     18
D63V1, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                1                 24
  CLUS_2                2                 20
  CLUS_3                4                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        2      4      1
  12Q LOSS WILD-TYPE     22     25     15
D63V2, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                2                 22
  CLUS_2                4                 25
  CLUS_3                1                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12Q LOSS MUTATED        2      6      2      1      6      3
  12Q LOSS WILD-TYPE      8     28     40     29     18     19
D63V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        2      7      4
  12Q LOSS WILD-TYPE     22     32     26
D63V4, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                2                 22
  CLUS_2                7                 32
  CLUS_3                4                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        4      4      9
  12Q LOSS WILD-TYPE     29     36     44
D63V5, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                4                 29
  CLUS_2                4                 36
  CLUS_3                9                 44
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q LOSS MUTATED        2      1      4      3      7
  12Q LOSS WILD-TYPE      4     16     28     23     38
D63V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        8      3      7
  12Q LOSS WILD-TYPE     50     28     58
D63V7, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                8                 50
  CLUS_2                3                 28
  CLUS_3                7                 58
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED        6      0      8      4
  12Q LOSS WILD-TYPE     60      7     42     27
D63V8, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                6                 60
  CLUS_2                0                  7
  CLUS_3                8                 42
  CLUS_4                4                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q LOSS MUTATED        4      7      1      1      5
  12Q LOSS WILD-TYPE     14     35     16      7     51
D63V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        4      4     10
  12Q LOSS WILD-TYPE     15     59     49
D63V10, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                4                 15
  CLUS_2                4                 59
  CLUS_3               10                 49
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED        0      6      3      3
  12Q LOSS WILD-TYPE     11     16     20     15
D63V11, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                6                 16
  CLUS_3                3                 20
  CLUS_4                3                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q LOSS MUTATED        0      4      2      2      4
  12Q LOSS WILD-TYPE      9     16     11      8     18
D63V12, multiclass

Clustering(64) Variable = 13Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        1      2      0
  13Q LOSS WILD-TYPE     24     20     22
D64V1, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                1                 24
  CLUS_2                2                 20
  CLUS_3                0                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        1      0      2
  13Q LOSS WILD-TYPE     23     29     14
D64V2, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                1                 23
  CLUS_2                0                 29
  CLUS_3                2                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  13Q LOSS MUTATED        0      0      1      3      2      2
  13Q LOSS WILD-TYPE     10     34     41     27     22     20
D64V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        2      0      3
  13Q LOSS WILD-TYPE     22     39     27
D64V4, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                2                 22
  CLUS_2                0                 39
  CLUS_3                3                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        4      0      4
  13Q LOSS WILD-TYPE     29     40     49
D64V5, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                4                 29
  CLUS_2                0                 40
  CLUS_3                4                 49
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q LOSS MUTATED        0      1      0      3      4
  13Q LOSS WILD-TYPE      6     16     32     23     41
D64V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        3      1      4
  13Q LOSS WILD-TYPE     55     30     61
D64V7, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                3                 55
  CLUS_2                1                 30
  CLUS_3                4                 61
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED        4      0      3      1
  13Q LOSS WILD-TYPE     62      7     47     30
D64V8, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                4                 62
  CLUS_2                0                  7
  CLUS_3                3                 47
  CLUS_4                1                 30
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q LOSS MUTATED        0      1      3      0      3
  13Q LOSS WILD-TYPE     18     41     14      8     53
D64V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        1      3      3
  13Q LOSS WILD-TYPE     18     60     56
D64V10, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                1                 18
  CLUS_2                3                 60
  CLUS_3                3                 56
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED        0      1      1      2
  13Q LOSS WILD-TYPE     11     21     22     16
D64V11, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                1                 21
  CLUS_3                1                 22
  CLUS_4                2                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q LOSS MUTATED        0      0      1      1      2
  13Q LOSS WILD-TYPE      9     20     12      9     20
D64V12, multiclass

Clustering(65) Variable = 14Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        9      7     11
  14Q LOSS WILD-TYPE     16     15     11
D65V1, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                9                 16
  CLUS_2                7                 15
  CLUS_3               11                 11
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        8     14      5
  14Q LOSS WILD-TYPE     16     15     11
D65V2, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                8                 16
  CLUS_2               14                 15
  CLUS_3                5                 11
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  14Q LOSS MUTATED        6     20     10     13     11      5
  14Q LOSS WILD-TYPE      4     14     32     17     13     17
D65V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       11     17     11
  14Q LOSS WILD-TYPE     13     22     19
D65V4, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               11                 13
  CLUS_2               17                 22
  CLUS_3               11                 19
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       15     15     23
  14Q LOSS WILD-TYPE     18     25     30
D65V5, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               15                 18
  CLUS_2               15                 25
  CLUS_3               23                 30
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q LOSS MUTATED        1      5     12     13     22
  14Q LOSS WILD-TYPE      5     12     20     13     23
D65V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       25     10     26
  14Q LOSS WILD-TYPE     33     21     39
D65V7, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               25                 33
  CLUS_2               10                 21
  CLUS_3               26                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED       25      2     20     14
  14Q LOSS WILD-TYPE     41      5     30     17
D65V8, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               25                 41
  CLUS_2                2                  5
  CLUS_3               20                 30
  CLUS_4               14                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q LOSS MUTATED        6     23      6      3     20
  14Q LOSS WILD-TYPE     12     19     11      5     36
D65V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        9     21     28
  14Q LOSS WILD-TYPE     10     42     31
D65V10, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                9                 10
  CLUS_2               21                 42
  CLUS_3               28                 31
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED        4      9     12      9
  14Q LOSS WILD-TYPE      7     13     11      9
D65V11, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                4                  7
  CLUS_2                9                 13
  CLUS_3               12                 11
  CLUS_4                9                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q LOSS MUTATED        4      8      6      5     11
  14Q LOSS WILD-TYPE      5     12      7      5     11
D65V12, multiclass

Clustering(66) Variable = 15Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       10     11     13
  15Q LOSS WILD-TYPE     15     11      9
D66V1, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               10                 15
  CLUS_2               11                 11
  CLUS_3               13                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        8     20      6
  15Q LOSS WILD-TYPE     16      9     10
D66V2, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                8                 16
  CLUS_2               20                  9
  CLUS_3                6                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  15Q LOSS MUTATED        6     16      9     18     16      7
  15Q LOSS WILD-TYPE      4     18     33     12      8     15
D66V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       11     16     12
  15Q LOSS WILD-TYPE     13     23     18
D66V4, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               11                 13
  CLUS_2               16                 23
  CLUS_3               12                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       10     17     29
  15Q LOSS WILD-TYPE     23     23     24
D66V5, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               10                 23
  CLUS_2               17                 23
  CLUS_3               29                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q LOSS MUTATED        2      4     14     10     26
  15Q LOSS WILD-TYPE      4     13     18     16     19
D66V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       26     12     31
  15Q LOSS WILD-TYPE     32     19     34
D66V7, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               26                 32
  CLUS_2               12                 19
  CLUS_3               31                 34
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED       30      4     24     11
  15Q LOSS WILD-TYPE     36      3     26     20
D66V8, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               30                 36
  CLUS_2                4                  3
  CLUS_3               24                 26
  CLUS_4               11                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q LOSS MUTATED       10     19      6      3     25
  15Q LOSS WILD-TYPE      8     23     11      5     31
D66V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        9     28     26
  15Q LOSS WILD-TYPE     10     35     33
D66V10, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                9                 10
  CLUS_2               28                 35
  CLUS_3               26                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED        5     10     11      7
  15Q LOSS WILD-TYPE      6     12     12     11
D66V11, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                5                  6
  CLUS_2               10                 12
  CLUS_3               11                 12
  CLUS_4                7                 11
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q LOSS MUTATED        3     10      5      5     10
  15Q LOSS WILD-TYPE      6     10      8      5     12
D66V12, multiclass

Clustering(67) Variable = 16P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        0      2      2
  16P LOSS WILD-TYPE     25     20     20
D67V1, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                0                 25
  CLUS_2                2                 20
  CLUS_3                2                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        0      4      0
  16P LOSS WILD-TYPE     24     25     16
D67V2, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                0                 24
  CLUS_2                4                 25
  CLUS_3                0                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16P LOSS MUTATED        0      1      1      5      1      1
  16P LOSS WILD-TYPE     10     33     41     25     23     21
D67V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        0      1      4
  16P LOSS WILD-TYPE     24     38     26
D67V4, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                0                 24
  CLUS_2                1                 38
  CLUS_3                4                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        3      3      2
  16P LOSS WILD-TYPE     30     37     51
D67V5, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                3                 30
  CLUS_2                3                 37
  CLUS_3                2                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P LOSS MUTATED        1      0      2      2      3
  16P LOSS WILD-TYPE      5     17     30     24     42
D67V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        3      2      4
  16P LOSS WILD-TYPE     55     29     61
D67V7, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                3                 55
  CLUS_2                2                 29
  CLUS_3                4                 61
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED        3      1      3      2
  16P LOSS WILD-TYPE     63      6     47     29
D67V8, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                3                 63
  CLUS_2                1                  6
  CLUS_3                3                 47
  CLUS_4                2                 29
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P LOSS MUTATED        0      4      0      0      4
  16P LOSS WILD-TYPE     18     38     17      8     52
D67V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        0      4      4
  16P LOSS WILD-TYPE     19     59     55
D67V10, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                4                 59
  CLUS_3                4                 55
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED        1      1      2      0
  16P LOSS WILD-TYPE     10     21     21     18
D67V11, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                1                 21
  CLUS_3                2                 21
  CLUS_4                0                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P LOSS MUTATED        1      1      0      0      2
  16P LOSS WILD-TYPE      8     19     13     10     20
D67V12, multiclass

Clustering(68) Variable = 16Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        1      4      2
  16Q LOSS WILD-TYPE     24     18     20
D68V1, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                1                 24
  CLUS_2                4                 18
  CLUS_3                2                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        1      5      1
  16Q LOSS WILD-TYPE     23     24     15
D68V2, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                1                 23
  CLUS_2                5                 24
  CLUS_3                1                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16Q LOSS MUTATED        0      1      1      9      1      2
  16Q LOSS WILD-TYPE     10     33     41     21     23     20
D68V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        0      3      4
  16Q LOSS WILD-TYPE     24     36     26
D68V4, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                0                 24
  CLUS_2                3                 36
  CLUS_3                4                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        4      3      3
  16Q LOSS WILD-TYPE     29     37     50
D68V5, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                4                 29
  CLUS_2                3                 37
  CLUS_3                3                 50
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q LOSS MUTATED        1      0      2      3      4
  16Q LOSS WILD-TYPE      5     17     30     23     41
D68V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        3      4      7
  16Q LOSS WILD-TYPE     55     27     58
D68V7, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                3                 55
  CLUS_2                4                 27
  CLUS_3                7                 58
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED        6      1      3      4
  16Q LOSS WILD-TYPE     60      6     47     27
D68V8, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                6                 60
  CLUS_2                1                  6
  CLUS_3                3                 47
  CLUS_4                4                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q LOSS MUTATED        0      5      1      0      7
  16Q LOSS WILD-TYPE     18     37     16      8     49
D68V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        0      7      6
  16Q LOSS WILD-TYPE     19     56     53
D68V10, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                0                 19
  CLUS_2                7                 56
  CLUS_3                6                 53
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED        1      1      3      1
  16Q LOSS WILD-TYPE     10     21     20     17
D68V11, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                1                 21
  CLUS_3                3                 20
  CLUS_4                1                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q LOSS MUTATED        1      2      0      0      3
  16Q LOSS WILD-TYPE      8     18     13     10     19
D68V12, multiclass

Clustering(69) Variable = 17P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       13     14     17
  17P LOSS WILD-TYPE     12      8      5
D69V1, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               13                 12
  CLUS_2               14                  8
  CLUS_3               17                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       13     20     11
  17P LOSS WILD-TYPE     11      9      5
D69V2, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               13                 11
  CLUS_2               20                  9
  CLUS_3               11                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17P LOSS MUTATED        6     21     20     20     18     19
  17P LOSS WILD-TYPE      4     13     22     10      6      3
D69V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       15     23     23
  17P LOSS WILD-TYPE      9     16      7
D69V4, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               15                  9
  CLUS_2               23                 16
  CLUS_3               23                  7
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       22     27     34
  17P LOSS WILD-TYPE     11     13     19
D69V5, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               22                 11
  CLUS_2               27                 13
  CLUS_3               34                 19
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P LOSS MUTATED        5     11     23     19     25
  17P LOSS WILD-TYPE      1      6      9      7     20
D69V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       39     18     42
  17P LOSS WILD-TYPE     19     13     23
D69V7, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               39                 19
  CLUS_2               18                 13
  CLUS_3               42                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED       40      4     35     20
  17P LOSS WILD-TYPE     26      3     15     11
D69V8, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               40                 26
  CLUS_2                4                  3
  CLUS_3               35                 15
  CLUS_4               20                 11
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P LOSS MUTATED       12     26     12      5     35
  17P LOSS WILD-TYPE      6     16      5      3     21
D69V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       15     37     38
  17P LOSS WILD-TYPE      4     26     21
D69V10, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               15                  4
  CLUS_2               37                 26
  CLUS_3               38                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED        6     17     14     12
  17P LOSS WILD-TYPE      5      5      9      6
D69V11, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                6                  5
  CLUS_2               17                  5
  CLUS_3               14                  9
  CLUS_4               12                  6
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P LOSS MUTATED        4     14      9      6     16
  17P LOSS WILD-TYPE      5      6      4      4      6
D69V12, multiclass

Clustering(70) Variable = 17Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        4      2      3
  17Q LOSS WILD-TYPE     21     20     19
D70V1, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                4                 21
  CLUS_2                2                 20
  CLUS_3                3                 19
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        5      3      1
  17Q LOSS WILD-TYPE     19     26     15
D70V2, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                5                 19
  CLUS_2                3                 26
  CLUS_3                1                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17Q LOSS MUTATED        1      2      2      5      9      6
  17Q LOSS WILD-TYPE      9     32     40     25     15     16
D70V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        3      5      8
  17Q LOSS WILD-TYPE     21     34     22
D70V4, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                5                 34
  CLUS_3                8                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        4      6     10
  17Q LOSS WILD-TYPE     29     34     43
D70V5, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                4                 29
  CLUS_2                6                 34
  CLUS_3               10                 43
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q LOSS MUTATED        1      2      6      3      8
  17Q LOSS WILD-TYPE      5     15     26     23     37
D70V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       11      4      8
  17Q LOSS WILD-TYPE     47     27     57
D70V7, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               11                 47
  CLUS_2                4                 27
  CLUS_3                8                 57
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED        8      1     10      4
  17Q LOSS WILD-TYPE     58      6     40     27
D70V8, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                8                 58
  CLUS_2                1                  6
  CLUS_3               10                 40
  CLUS_4                4                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q LOSS MUTATED        3      7      3      1      6
  17Q LOSS WILD-TYPE     15     35     14      7     50
D70V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        3      7     10
  17Q LOSS WILD-TYPE     16     56     49
D70V10, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                3                 16
  CLUS_2                7                 56
  CLUS_3               10                 49
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED        0      5      4      4
  17Q LOSS WILD-TYPE     11     17     19     14
D70V11, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                5                 17
  CLUS_3                4                 19
  CLUS_4                4                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q LOSS MUTATED        0      3      3      3      4
  17Q LOSS WILD-TYPE      9     17     10      7     18
D70V12, multiclass

Clustering(71) Variable = 18P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       15     16     20
  18P LOSS WILD-TYPE     10      6      2
D71V1, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               15                 10
  CLUS_2               16                  6
  CLUS_3               20                  2
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       15     24     12
  18P LOSS WILD-TYPE      9      5      4
D71V2, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               15                  9
  CLUS_2               24                  5
  CLUS_3               12                  4
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18P LOSS MUTATED       10     33     23     18     20     21
  18P LOSS WILD-TYPE      0      1     19     12      4      1
D71V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       23     28     24
  18P LOSS WILD-TYPE      1     11      6
D71V4, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               23                  1
  CLUS_2               28                 11
  CLUS_3               24                  6
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       23     32     41
  18P LOSS WILD-TYPE     10      8     12
D71V5, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               23                 10
  CLUS_2               32                  8
  CLUS_3               41                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P LOSS MUTATED        3     12     26     18     37
  18P LOSS WILD-TYPE      3      5      6      8      8
D71V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       48     22     47
  18P LOSS WILD-TYPE     10      9     18
D71V7, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               48                 10
  CLUS_2               22                  9
  CLUS_3               47                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED       47      4     42     24
  18P LOSS WILD-TYPE     19      3      8      7
D71V8, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               47                 19
  CLUS_2                4                  3
  CLUS_3               42                  8
  CLUS_4               24                  7
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P LOSS MUTATED       15     37     14      6     38
  18P LOSS WILD-TYPE      3      5      3      2     18
D71V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       16     44     50
  18P LOSS WILD-TYPE      3     19      9
D71V10, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               16                  3
  CLUS_2               44                 19
  CLUS_3               50                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED        7     19     20     17
  18P LOSS WILD-TYPE      4      3      3      1
D71V11, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                7                  4
  CLUS_2               19                  3
  CLUS_3               20                  3
  CLUS_4               17                  1
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P LOSS MUTATED        7     17     11      9     19
  18P LOSS WILD-TYPE      2      3      2      1      3
D71V12, multiclass

Clustering(72) Variable = 18Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       16     19     21
  18Q LOSS WILD-TYPE      9      3      1
D72V1, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               16                  9
  CLUS_2               19                  3
  CLUS_3               21                  1
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       16     27     13
  18Q LOSS WILD-TYPE      8      2      3
D72V2, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               16                  8
  CLUS_2               27                  2
  CLUS_3               13                  3
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18Q LOSS MUTATED       10     34     25     23     22     21
  18Q LOSS WILD-TYPE      0      0     17      7      2      1
D72V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       24     30     26
  18Q LOSS WILD-TYPE      0      9      4
D72V4, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               24                  0
  CLUS_2               30                  9
  CLUS_3               26                  4
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       26     34     44
  18Q LOSS WILD-TYPE      7      6      9
D72V5, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               26                  7
  CLUS_2               34                  6
  CLUS_3               44                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q LOSS MUTATED        5     12     28     21     38
  18Q LOSS WILD-TYPE      1      5      4      5      7
D72V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       50     24     53
  18Q LOSS WILD-TYPE      8      7     12
D72V7, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               50                  8
  CLUS_2               24                  7
  CLUS_3               53                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED       52      5     44     26
  18Q LOSS WILD-TYPE     14      2      6      5
D72V8, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               52                 14
  CLUS_2                5                  2
  CLUS_3               44                  6
  CLUS_4               26                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q LOSS MUTATED       16     38     15      7     43
  18Q LOSS WILD-TYPE      2      4      2      1     13
D72V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       18     49     52
  18Q LOSS WILD-TYPE      1     14      7
D72V10, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               18                  1
  CLUS_2               49                 14
  CLUS_3               52                  7
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED        7     20     21     18
  18Q LOSS WILD-TYPE      4      2      2      0
D72V11, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                7                  4
  CLUS_2               20                  2
  CLUS_3               21                  2
  CLUS_4               18                  0
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q LOSS MUTATED        7     17     12     10     20
  18Q LOSS WILD-TYPE      2      3      1      0      2
D72V12, multiclass

Clustering(73) Variable = 19P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        1      2      2
  19P LOSS WILD-TYPE     24     20     20
D73V1, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                 24
  CLUS_2                2                 20
  CLUS_3                2                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        1      3      1
  19P LOSS WILD-TYPE     23     26     15
D73V2, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                 23
  CLUS_2                3                 26
  CLUS_3                1                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19P LOSS MUTATED        2      8      1      4      5      2
  19P LOSS WILD-TYPE      8     26     41     26     19     20
D73V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        8      4      5
  19P LOSS WILD-TYPE     16     35     25
D73V4, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                8                 16
  CLUS_2                4                 35
  CLUS_3                5                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        3      5      8
  19P LOSS WILD-TYPE     30     35     45
D73V5, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                3                 30
  CLUS_2                5                 35
  CLUS_3                8                 45
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P LOSS MUTATED        1      2      4      3      6
  19P LOSS WILD-TYPE      5     15     28     23     39
D73V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED       11      4      6
  19P LOSS WILD-TYPE     47     27     59
D73V7, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               11                 47
  CLUS_2                4                 27
  CLUS_3                6                 59
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED        5      1     10      5
  19P LOSS WILD-TYPE     61      6     40     26
D73V8, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                5                 61
  CLUS_2                1                  6
  CLUS_3               10                 40
  CLUS_4                5                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P LOSS MUTATED        4      9      1      1      5
  19P LOSS WILD-TYPE     14     33     16      7     51
D73V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        7      4      9
  19P LOSS WILD-TYPE     12     59     50
D73V10, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                7                 12
  CLUS_2                4                 59
  CLUS_3                9                 50
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED        1      4      4      5
  19P LOSS WILD-TYPE     10     18     19     13
D73V11, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                4                 18
  CLUS_3                4                 19
  CLUS_4                5                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P LOSS MUTATED        1      3      5      1      4
  19P LOSS WILD-TYPE      8     17      8      9     18
D73V12, multiclass

Clustering(74) Variable = 19Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        1      2      1
  19Q LOSS WILD-TYPE     24     20     21
D74V1, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 24
  CLUS_2                2                 20
  CLUS_3                1                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        0      2      2
  19Q LOSS WILD-TYPE     24     27     14
D74V2, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                0                 24
  CLUS_2                2                 27
  CLUS_3                2                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19Q LOSS MUTATED        1      6      2      4      5      3
  19Q LOSS WILD-TYPE      9     28     40     26     19     19
D74V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        8      4      5
  19Q LOSS WILD-TYPE     16     35     25
D74V4, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                8                 16
  CLUS_2                4                 35
  CLUS_3                5                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        3      5      7
  19Q LOSS WILD-TYPE     30     35     46
D74V5, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                3                 30
  CLUS_2                5                 35
  CLUS_3                7                 46
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q LOSS MUTATED        1      2      5      3      4
  19Q LOSS WILD-TYPE      5     15     27     23     41
D74V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED       10      5      5
  19Q LOSS WILD-TYPE     48     26     60
D74V7, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               10                 48
  CLUS_2                5                 26
  CLUS_3                5                 60
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        4      1      9      6
  19Q LOSS WILD-TYPE     62      6     41     25
D74V8, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                4                 62
  CLUS_2                1                  6
  CLUS_3                9                 41
  CLUS_4                6                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q LOSS MUTATED        4      9      1      2      3
  19Q LOSS WILD-TYPE     14     33     16      6     53
D74V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        7      3      9
  19Q LOSS WILD-TYPE     12     60     50
D74V10, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                7                 12
  CLUS_2                3                 60
  CLUS_3                9                 50
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        1      4      6      3
  19Q LOSS WILD-TYPE     10     18     17     15
D74V11, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 10
  CLUS_2                4                 18
  CLUS_3                6                 17
  CLUS_4                3                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q LOSS MUTATED        1      4      5      0      4
  19Q LOSS WILD-TYPE      8     16      8     10     18
D74V12, multiclass

Clustering(75) Variable = 20P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        4      4      4
  20P LOSS WILD-TYPE     21     18     18
D75V1, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                4                 21
  CLUS_2                4                 18
  CLUS_3                4                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        4      5      3
  20P LOSS WILD-TYPE     20     24     13
D75V2, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                5                 24
  CLUS_3                3                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20P LOSS MUTATED        0      7      2      7      6      3
  20P LOSS WILD-TYPE     10     27     40     23     18     19
D75V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        6      5      3
  20P LOSS WILD-TYPE     18     34     27
D75V4, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                6                 18
  CLUS_2                5                 34
  CLUS_3                3                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        6     10      6
  20P LOSS WILD-TYPE     27     30     47
D75V5, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                6                 27
  CLUS_2               10                 30
  CLUS_3                6                 47
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P LOSS MUTATED        1      3      8      4      6
  20P LOSS WILD-TYPE      5     14     24     22     39
D75V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        7      2     13
  20P LOSS WILD-TYPE     51     29     52
D75V7, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                7                 51
  CLUS_2                2                 29
  CLUS_3               13                 52
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED       13      0      5      4
  20P LOSS WILD-TYPE     53      7     45     27
D75V8, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               13                 53
  CLUS_2                0                  7
  CLUS_3                5                 45
  CLUS_4                4                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P LOSS MUTATED        4      6      0      3     10
  20P LOSS WILD-TYPE     14     36     17      5     46
D75V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        5     12      6
  20P LOSS WILD-TYPE     14     51     53
D75V10, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                5                 14
  CLUS_2               12                 51
  CLUS_3                6                 53
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED        0      6      4      0
  20P LOSS WILD-TYPE     11     16     19     18
D75V11, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                0                 11
  CLUS_2                6                 16
  CLUS_3                4                 19
  CLUS_4                0                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P LOSS MUTATED        0      5      3      0      2
  20P LOSS WILD-TYPE      9     15     10     10     20
D75V12, multiclass

Clustering(76) Variable = 21Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        6      9     10
  21Q LOSS WILD-TYPE     19     13     12
D76V1, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                6                 19
  CLUS_2                9                 13
  CLUS_3               10                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        6     14      5
  21Q LOSS WILD-TYPE     18     15     11
D76V2, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                6                 18
  CLUS_2               14                 15
  CLUS_3                5                 11
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  21Q LOSS MUTATED        6     18     11     17      8      6
  21Q LOSS WILD-TYPE      4     16     31     13     16     16
D76V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       11     17     13
  21Q LOSS WILD-TYPE     13     22     17
D76V4, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               11                 13
  CLUS_2               17                 22
  CLUS_3               13                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       14     18     22
  21Q LOSS WILD-TYPE     19     22     31
D76V5, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               14                 19
  CLUS_2               18                 22
  CLUS_3               22                 31
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q LOSS MUTATED        1      6     14     13     20
  21Q LOSS WILD-TYPE      5     11     18     13     25
D76V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       22     13     26
  21Q LOSS WILD-TYPE     36     18     39
D76V7, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               22                 36
  CLUS_2               13                 18
  CLUS_3               26                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED       26      2     21     12
  21Q LOSS WILD-TYPE     40      5     29     19
D76V8, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               26                 40
  CLUS_2                2                  5
  CLUS_3               21                 29
  CLUS_4               12                 19
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q LOSS MUTATED        7     22      2      6     24
  21Q LOSS WILD-TYPE     11     20     15      2     32
D76V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       11     26     24
  21Q LOSS WILD-TYPE      8     37     35
D76V10, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               11                  8
  CLUS_2               26                 37
  CLUS_3               24                 35
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED        5      8     13      6
  21Q LOSS WILD-TYPE      6     14     10     12
D76V11, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                5                  6
  CLUS_2                8                 14
  CLUS_3               13                 10
  CLUS_4                6                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q LOSS MUTATED        4      8      6      2     12
  21Q LOSS WILD-TYPE      5     12      7      8     10
D76V12, multiclass

Clustering(77) Variable = 22Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED        7      8      8
  22Q LOSS WILD-TYPE     18     14     14
D77V1, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                7                 18
  CLUS_2                8                 14
  CLUS_3                8                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED        5     12      6
  22Q LOSS WILD-TYPE     19     17     10
D77V2, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                5                 19
  CLUS_2               12                 17
  CLUS_3                6                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  22Q LOSS MUTATED        4     12      9     15     12      5
  22Q LOSS WILD-TYPE      6     22     33     15     12     17
D77V3, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED        7     16     12
  22Q LOSS WILD-TYPE     17     23     18
D77V4, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                7                 17
  CLUS_2               16                 23
  CLUS_3               12                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       11     13     21
  22Q LOSS WILD-TYPE     22     27     32
D77V5, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               11                 22
  CLUS_2               13                 27
  CLUS_3               21                 32
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q LOSS MUTATED        1      4     12      9     19
  22Q LOSS WILD-TYPE      5     13     20     17     26
D77V6, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       15     16     21
  22Q LOSS WILD-TYPE     43     15     44
D77V7, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               15                 43
  CLUS_2               16                 15
  CLUS_3               21                 44
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED       23      2     13     14
  22Q LOSS WILD-TYPE     43      5     37     17
D77V8, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               23                 43
  CLUS_2                2                  5
  CLUS_3               13                 37
  CLUS_4               14                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q LOSS MUTATED        4     24      2      4     20
  22Q LOSS WILD-TYPE     14     18     15      4     36
D77V9, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED        9     21     24
  22Q LOSS WILD-TYPE     10     42     35
D77V10, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                9                 10
  CLUS_2               21                 42
  CLUS_3               24                 35
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED        6      7     12      6
  22Q LOSS WILD-TYPE      5     15     11     12
D77V11, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                6                  5
  CLUS_2                7                 15
  CLUS_3               12                 11
  CLUS_4                6                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q LOSS MUTATED        6      5      7      3     10
  22Q LOSS WILD-TYPE      3     15      6      7     12
D77V12, multiclass

Clustering(78) Variable = XQ LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        4      4      3
  XQ LOSS WILD-TYPE     21     18     19
D78V1, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               4                21
  CLUS_2               4                18
  CLUS_3               3                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        4      4      3
  XQ LOSS WILD-TYPE     20     25     13
D78V2, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               4                20
  CLUS_2               4                25
  CLUS_3               3                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XQ LOSS MUTATED        2      4      4     10      3      2
  XQ LOSS WILD-TYPE      8     30     38     20     21     20
D78V3, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        3      8      3
  XQ LOSS WILD-TYPE     21     31     27
D78V4, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               3                21
  CLUS_2               8                31
  CLUS_3               3                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        4      6     11
  XQ LOSS WILD-TYPE     29     34     42
D78V5, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               4                29
  CLUS_2               6                34
  CLUS_3              11                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ LOSS MUTATED        1      2      5      5      8
  XQ LOSS WILD-TYPE      5     15     27     21     37
D78V6, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        8      5     12
  XQ LOSS WILD-TYPE     50     26     53
D78V7, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               8                50
  CLUS_2               5                26
  CLUS_3              12                53
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED       11      2      7      5
  XQ LOSS WILD-TYPE     55      5     43     26
D78V8, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              11                55
  CLUS_2               2                 5
  CLUS_3               7                43
  CLUS_4               5                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ LOSS MUTATED        3      7      2      2      9
  XQ LOSS WILD-TYPE     15     35     15      6     47
D78V9, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        3      9     11
  XQ LOSS WILD-TYPE     16     54     48
D78V10, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               3                16
  CLUS_2               9                54
  CLUS_3              11                48
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED        1      4      4      3
  XQ LOSS WILD-TYPE     10     18     19     15
D78V11, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               1                10
  CLUS_2               4                18
  CLUS_3               4                19
  CLUS_4               3                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ LOSS MUTATED        1      4      1      1      5
  XQ LOSS WILD-TYPE      8     16     12      9     17
D78V12, multiclass
> q(save="no")
