
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/SARC-TP/6158685/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/SARC-TP/6154784/SARC-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=SARC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=SARC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/SARC-TP/6154784/SARC-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/SARC-TP/6158685/transformed.cor.cli.txt"

nPatients in clinical file=82, in cluster file=127, common to both=82
[1] 54 82
[1] "AMP PEAK  1(1P32.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE 
                           27                            55 
  AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE 
                           27                            55 
[1] "AMP PEAK  2(1Q24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(1Q24.3) MUTATED AMP PEAK  2(1Q24.3) WILD-TYPE 
                           32                            50 
  AMP PEAK  2(1Q24.3) MUTATED AMP PEAK  2(1Q24.3) WILD-TYPE 
                           32                            50 
[1] "AMP PEAK  3(3P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(3P11.2) MUTATED AMP PEAK  3(3P11.2) WILD-TYPE 
                           18                            64 
  AMP PEAK  3(3P11.2) MUTATED AMP PEAK  3(3P11.2) WILD-TYPE 
                           18                            64 
[1] "AMP PEAK  4(5P15.33) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE 
                            36                             46 
  AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE 
                            36                             46 
[1] "AMP PEAK  5(6P21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE 
                           17                            65 
  AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE 
                           17                            65 
[1] "AMP PEAK  6(6Q24.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE 
                           26                            56 
  AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE 
                           26                            56 
[1] "AMP PEAK  7(7P21.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(7P21.3) MUTATED AMP PEAK  7(7P21.3) WILD-TYPE 
                           25                            57 
  AMP PEAK  7(7P21.3) MUTATED AMP PEAK  7(7P21.3) WILD-TYPE 
                           25                            57 
[1] "AMP PEAK  8(8Q21.12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(8Q21.12) MUTATED AMP PEAK  8(8Q21.12) WILD-TYPE 
                            28                             54 
  AMP PEAK  8(8Q21.12) MUTATED AMP PEAK  8(8Q21.12) WILD-TYPE 
                            28                             54 
[1] "AMP PEAK  9(11Q22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(11Q22.2) MUTATED AMP PEAK  9(11Q22.2) WILD-TYPE 
                            14                             68 
  AMP PEAK  9(11Q22.2) MUTATED AMP PEAK  9(11Q22.2) WILD-TYPE 
                            14                             68 
[1] "AMP PEAK 10(12P13.32) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(12P13.32) MUTATED AMP PEAK 10(12P13.32) WILD-TYPE 
                             17                              65 
  AMP PEAK 10(12P13.32) MUTATED AMP PEAK 10(12P13.32) WILD-TYPE 
                             17                              65 
[1] "AMP PEAK 11(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(12Q15) MUTATED AMP PEAK 11(12Q15) WILD-TYPE 
                          37                           45 
  AMP PEAK 11(12Q15) MUTATED AMP PEAK 11(12Q15) WILD-TYPE 
                          37                           45 
[1] "AMP PEAK 12(17P12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(17P12) MUTATED AMP PEAK 12(17P12) WILD-TYPE 
                          27                           55 
  AMP PEAK 12(17P12) MUTATED AMP PEAK 12(17P12) WILD-TYPE 
                          27                           55 
[1] "AMP PEAK 13(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(19P13.2) MUTATED AMP PEAK 13(19P13.2) WILD-TYPE 
                            29                             53 
  AMP PEAK 13(19P13.2) MUTATED AMP PEAK 13(19P13.2) WILD-TYPE 
                            29                             53 
[1] "AMP PEAK 14(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(19Q12) MUTATED AMP PEAK 14(19Q12) WILD-TYPE 
                          28                           54 
  AMP PEAK 14(19Q12) MUTATED AMP PEAK 14(19Q12) WILD-TYPE 
                          28                           54 
[1] "AMP PEAK 15(20Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(20Q12) MUTATED AMP PEAK 15(20Q12) WILD-TYPE 
                          32                           50 
  AMP PEAK 15(20Q12) MUTATED AMP PEAK 15(20Q12) WILD-TYPE 
                          32                           50 
[1] "AMP PEAK 16(XP21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(XP21.1) MUTATED AMP PEAK 16(XP21.1) WILD-TYPE 
                           22                            60 
  AMP PEAK 16(XP21.1) MUTATED AMP PEAK 16(XP21.1) WILD-TYPE 
                           22                            60 
[1] "AMP PEAK 17(XQ21.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(XQ21.1) MUTATED AMP PEAK 17(XQ21.1) WILD-TYPE 
                           12                            70 
  AMP PEAK 17(XQ21.1) MUTATED AMP PEAK 17(XQ21.1) WILD-TYPE 
                           12                            70 
[1] "DEL PEAK  1(1P36.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            30                             52 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            30                             52 
[1] "DEL PEAK  2(1Q43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1Q43) MUTATED DEL PEAK  2(1Q43) WILD-TYPE 
                         22                          60 
  DEL PEAK  2(1Q43) MUTATED DEL PEAK  2(1Q43) WILD-TYPE 
                         22                          60 
[1] "DEL PEAK  3(2P25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                           26                            56 
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                           26                            56 
[1] "DEL PEAK  4(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           30                            52 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           30                            52 
[1] "DEL PEAK  5(2Q37.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                           30                            52 
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                           30                            52 
[1] "DEL PEAK  6(3P21.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE 
                            17                             65 
  DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE 
                            17                             65 
[1] "DEL PEAK  7(3Q26.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(3Q26.31) MUTATED DEL PEAK  7(3Q26.31) WILD-TYPE 
                            19                             63 
  DEL PEAK  7(3Q26.31) MUTATED DEL PEAK  7(3Q26.31) WILD-TYPE 
                            19                             63 
[1] "DEL PEAK  8(4Q35.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE 
                           32                            50 
  DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE 
                           32                            50 
[1] "DEL PEAK  9(5Q31.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(5Q31.1) MUTATED DEL PEAK  9(5Q31.1) WILD-TYPE 
                            9                            73 
  DEL PEAK  9(5Q31.1) MUTATED DEL PEAK  9(5Q31.1) WILD-TYPE 
                            9                            73 
[1] "DEL PEAK 10(6P24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(6P24.3) MUTATED DEL PEAK 10(6P24.3) WILD-TYPE 
                           31                            51 
  DEL PEAK 10(6P24.3) MUTATED DEL PEAK 10(6P24.3) WILD-TYPE 
                           31                            51 
[1] "DEL PEAK 11(6Q14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(6Q14.1) MUTATED DEL PEAK 11(6Q14.1) WILD-TYPE 
                           18                            64 
  DEL PEAK 11(6Q14.1) MUTATED DEL PEAK 11(6Q14.1) WILD-TYPE 
                           18                            64 
[1] "DEL PEAK 12(7Q36.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(7Q36.3) MUTATED DEL PEAK 12(7Q36.3) WILD-TYPE 
                           19                            63 
  DEL PEAK 12(7Q36.3) MUTATED DEL PEAK 12(7Q36.3) WILD-TYPE 
                           19                            63 
[1] "DEL PEAK 13(8P23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE 
                           24                            58 
  DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE 
                           24                            58 
[1] "DEL PEAK 14(9P24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE 
                           32                            50 
  DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE 
                           32                            50 
[1] "DEL PEAK 15(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE 
                           37                            45 
  DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE 
                           37                            45 
[1] "DEL PEAK 16(9Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(9Q34.3) MUTATED DEL PEAK 16(9Q34.3) WILD-TYPE 
                           18                            64 
  DEL PEAK 16(9Q34.3) MUTATED DEL PEAK 16(9Q34.3) WILD-TYPE 
                           18                            64 
[1] "DEL PEAK 17(10P15.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(10P15.3) MUTATED DEL PEAK 17(10P15.3) WILD-TYPE 
                            38                             44 
  DEL PEAK 17(10P15.3) MUTATED DEL PEAK 17(10P15.3) WILD-TYPE 
                            38                             44 
[1] "DEL PEAK 18(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE 
                             44                              38 
  DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE 
                             44                              38 
[1] "DEL PEAK 19(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE 
                            34                             48 
  DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE 
                            34                             48 
[1] "DEL PEAK 20(11Q24.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(11Q24.3) MUTATED DEL PEAK 20(11Q24.3) WILD-TYPE 
                            37                             45 
  DEL PEAK 20(11Q24.3) MUTATED DEL PEAK 20(11Q24.3) WILD-TYPE 
                            37                             45 
[1] "DEL PEAK 21(12P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE 
                            21                             61 
  DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE 
                            21                             61 
[1] "DEL PEAK 22(12Q12) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE 
                          17                           65 
  DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE 
                          17                           65 
[1] "DEL PEAK 23(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE 
                            55                             27 
  DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE 
                            55                             27 
[1] "DEL PEAK 24(14Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(14Q24.1) MUTATED DEL PEAK 24(14Q24.1) WILD-TYPE 
                            32                             50 
  DEL PEAK 24(14Q24.1) MUTATED DEL PEAK 24(14Q24.1) WILD-TYPE 
                            32                             50 
[1] "DEL PEAK 25(16Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(16Q12.1) MUTATED DEL PEAK 25(16Q12.1) WILD-TYPE 
                            44                             38 
  DEL PEAK 25(16Q12.1) MUTATED DEL PEAK 25(16Q12.1) WILD-TYPE 
                            44                             38 
[1] "DEL PEAK 26(17P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(17P13.3) MUTATED DEL PEAK 26(17P13.3) WILD-TYPE 
                            27                             55 
  DEL PEAK 26(17P13.3) MUTATED DEL PEAK 26(17P13.3) WILD-TYPE 
                            27                             55 
[1] "DEL PEAK 27(17P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(17P13.1) MUTATED DEL PEAK 27(17P13.1) WILD-TYPE 
                            33                             49 
  DEL PEAK 27(17P13.1) MUTATED DEL PEAK 27(17P13.1) WILD-TYPE 
                            33                             49 
[1] "DEL PEAK 28(17Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(17Q11.2) MUTATED DEL PEAK 28(17Q11.2) WILD-TYPE 
                            18                             64 
  DEL PEAK 28(17Q11.2) MUTATED DEL PEAK 28(17Q11.2) WILD-TYPE 
                            18                             64 
[1] "DEL PEAK 29(17Q25.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(17Q25.3) MUTATED DEL PEAK 29(17Q25.3) WILD-TYPE 
                            23                             59 
  DEL PEAK 29(17Q25.3) MUTATED DEL PEAK 29(17Q25.3) WILD-TYPE 
                            23                             59 
[1] "DEL PEAK 30(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE 
                            21                             61 
  DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE 
                            21                             61 
[1] "DEL PEAK 31(19Q13.43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(19Q13.43) MUTATED DEL PEAK 31(19Q13.43) WILD-TYPE 
                             29                              53 
  DEL PEAK 31(19Q13.43) MUTATED DEL PEAK 31(19Q13.43) WILD-TYPE 
                             29                              53 
[1] "DEL PEAK 32(21Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE 
                            16                             66 
  DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE 
                            16                             66 
[1] "DEL PEAK 33(21Q22.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(21Q22.3) MUTATED DEL PEAK 33(21Q22.3) WILD-TYPE 
                            25                             57 
  DEL PEAK 33(21Q22.3) MUTATED DEL PEAK 33(21Q22.3) WILD-TYPE 
                            25                             57 
[1] "DEL PEAK 34(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE 
                             32                              50 
  DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE 
                             32                              50 
[1] "DEL PEAK 35(XP22.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(XP22.32) MUTATED DEL PEAK 35(XP22.32) WILD-TYPE 
                            27                             55 
  DEL PEAK 35(XP22.32) MUTATED DEL PEAK 35(XP22.32) WILD-TYPE 
                            27                             55 
[1] "DEL PEAK 36(XQ21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(XQ21.1) MUTATED DEL PEAK 36(XQ21.1) WILD-TYPE 
                           41                            41 
  DEL PEAK 36(XQ21.1) MUTATED DEL PEAK 36(XQ21.1) WILD-TYPE 
                           41                            41 
[1] "DEL PEAK 37(XQ27.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(XQ27.1) MUTATED DEL PEAK 37(XQ27.1) WILD-TYPE 
                           39                            43 
  DEL PEAK 37(XQ27.1) MUTATED DEL PEAK 37(XQ27.1) WILD-TYPE 
                           39                            43 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
[1] "YEARSTOBIRTH"                          
[2] "VITALSTATUS"                           
[3] "DAYSTODEATH"                           
[4] "DAYSTOLASTFOLLOWUP"                    
[5] "DCCUPLOADDATE"                         
[6] "GENDER"                                
[7] "RADIATIONTHERAPY"                      
[8] "RADIATIONS.RADIATION.REGIMENINDICATION"
[9] "BATCHNUMBER"                           

Input Data has 9 rows and 82 columns.

[1] "Batch" "9"    
[1] "Last Follow UP"
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 
          NA           62          827           NA          745           NA 
TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T 
        1420         1291          960          908         2271           NA 
TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ 
          NA           NA           NA           NA         1834          260 
TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU 
          NA         1620         1309           NA          702         2144 
TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 
        3288          520          609          457          540         1301 
TCGA-DX-A3U8 TCGA-DX-A3U9 TCGA-DX-A3UA TCGA-DX-A3UB TCGA-DX-A3UC TCGA-DX-A3UD 
          NA           NA           NA         1352         1197          876 
TCGA-DX-A3UE TCGA-DX-A3UF TCGA-DX-A48J TCGA-DX-A48K TCGA-DX-A48L TCGA-DX-A48N 
          NA         1951           NA          587           NA          373 
TCGA-DX-A48O TCGA-DX-A48P TCGA-DX-A48R TCGA-DX-A48U TCGA-DX-A48V TCGA-DX-A6B9 
         828          455          805         2212          763          349 
TCGA-DX-A6BA TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BF TCGA-DX-A6BG TCGA-DX-A6BH 
        1669          328          495           63          223           51 
TCGA-DX-A6BK TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT 
          NA           14            3            2            2          818 
TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ 
          NA          126           NA          650          272           98 
TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 
          42           NA          966           NA         4362         3555 
TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF 
          NA         2229           NA          688          190           NA 
TCGA-KF-A41W TCGA-LI-A67I TCGA-MO-A47R TCGA-PC-A5DK 
         356          159            3         2296 
Variable 1:'AGE':	nDistinctValues=42,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=24,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=56,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 8:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 9:'BATCH.NUMBER':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"    "GENDER"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 82 columns, 1 survival variables, and 2 non-survival variables.
AGE, nv=42, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK  1(1P32.1) MUTATION ANALYSIS
D1V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  1(1P32.1) MUTATED   17 10
  AMP PEAK  1(1P32.1) WILD-TYPE 41 14
  AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE 
                           27                            55 
  AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE 
                           10                            14 
$`AMP PEAK  1(1P32.1) MUTATED`
TCGA-DX-A1L0 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A2IZ 
       18.51         5.23        76.37        66.87         6.28         8.55 
TCGA-DX-A2J0 TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3U7 TCGA-DX-A3U9 TCGA-DX-A48K 
        9.70        23.08        70.49        42.77        14.99        19.30 
TCGA-DX-A48L TCGA-DX-A48R TCGA-DX-A6BA TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BF 
       24.26        26.47        54.87        10.78        16.27         2.07 
TCGA-DX-A6BG TCGA-FX-A2QS TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IE-A4EI 
        7.33         0.46        26.89         4.54         4.14         8.94 
TCGA-JV-A5VF TCGA-KF-A41W TCGA-LI-A67I 
        1.05        11.70         5.23 

$`AMP PEAK  1(1P32.1) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 
       14.04         2.04        27.19        12.85        24.49        46.68 
TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23Z TCGA-DX-A240 
       42.44        31.56        29.85        74.66        27.78        60.30 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 
       53.26        43.04         9.01       108.10        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-DX-A3UA TCGA-DX-A3UB TCGA-DX-A3UC 
       15.02        17.75         4.50        10.68        44.45        39.35 
TCGA-DX-A3UD TCGA-DX-A3UE TCGA-DX-A3UF TCGA-DX-A48J TCGA-DX-A48N TCGA-DX-A48O 
       28.80        34.88        64.14         9.73        12.26        27.22 
TCGA-DX-A48P TCGA-DX-A48U TCGA-DX-A48V TCGA-DX-A6B9 TCGA-DX-A6BH TCGA-DX-A6BK 
       14.96        72.72        25.08        11.47         1.68        16.18 
TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EJ 
        0.10         0.07         0.07        12.62        21.37         3.22 
TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 
        1.38        25.22        31.76        28.21       143.41       116.88 
TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-MO-A47R 
       13.58        73.28         5.88        22.62         6.25         0.10 
TCGA-PC-A5DK 
       75.48 

  AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE 
                         0.46                          0.07 
  AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE 
                        76.37                        143.41 
  AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE 
                        11.70                         22.62 
[1] "0.5 - 76.4 (11.7)"  "0.1 - 143.4 (22.6)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
  "AMP PEAK  1(1P32.1) MUTATED"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  1(1P32.1) MUTATED"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "AMP PEAK  1(1P32.1) MUTATED"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
  "AMP PEAK  1(1P32.1) MUTATED"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "AMP PEAK  1(1P32.1) MUTATED"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
  "AMP PEAK  1(1P32.1) MUTATED"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
  "AMP PEAK  1(1P32.1) MUTATED"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  1(1P32.1) MUTATED"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "AMP PEAK  1(1P32.1) MUTATED"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
  "AMP PEAK  1(1P32.1) MUTATED"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "AMP PEAK  1(1P32.1) MUTATED"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
  "AMP PEAK  1(1P32.1) MUTATED"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
  "AMP PEAK  1(1P32.1) MUTATED"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  1(1P32.1) MUTATED"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "AMP PEAK  1(1P32.1) MUTATED"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
  "AMP PEAK  1(1P32.1) MUTATED"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "AMP PEAK  1(1P32.1) MUTATED"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK  1(1P32.1) MUTATED" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  1(1P32.1) WILD-TYPE"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
  "AMP PEAK  1(1P32.1) MUTATED"   "AMP PEAK  1(1P32.1) MUTATED" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"AMP PEAK  1(1P32.1) WILD-TYPE" "AMP PEAK  1(1P32.1) WILD-TYPE" 
[1] "hr=" "2"  
D1V2, continuous
D1V3, binary
                               cls
clus                             0  1
  AMP PEAK  1(1P32.1) MUTATED   12 15
  AMP PEAK  1(1P32.1) WILD-TYPE 28 27
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  1(1P32.1) MUTATED     12   15
  AMP PEAK  1(1P32.1) WILD-TYPE   28   27
        clus
vv       AMP PEAK  1(1P32.1) MUTATED AMP PEAK  1(1P32.1) WILD-TYPE
  FEMALE                          12                            28
  MALE                            15                            27

Clustering(2) Variable = AMP PEAK  2(1Q24.3) MUTATION ANALYSIS
D2V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  2(1Q24.3) MUTATED   23  9
  AMP PEAK  2(1Q24.3) WILD-TYPE 35 15
  AMP PEAK  2(1Q24.3) MUTATED AMP PEAK  2(1Q24.3) WILD-TYPE 
                           32                            50 
  AMP PEAK  2(1Q24.3) MUTATED AMP PEAK  2(1Q24.3) WILD-TYPE 
                            9                            15 
$`AMP PEAK  2(1Q24.3) MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A23U 
       14.04        12.85        18.51        42.44        31.56        76.37 
TCGA-DX-A240 TCGA-DX-A2J0 TCGA-DX-A3LT TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U9 
       60.30         9.70        23.08        17.75        42.77        14.99 
TCGA-DX-A3UD TCGA-DX-A3UF TCGA-DX-A48K TCGA-DX-A48N TCGA-DX-A48O TCGA-DX-A48R 
       28.80        64.14        19.30        12.26        27.22        26.47 
TCGA-DX-A6BF TCGA-DX-A6BG TCGA-DX-A6BH TCGA-FX-A2QS TCGA-FX-A48G TCGA-HB-A2OT 
        2.07         7.33         1.68         0.46         0.07        26.89 
TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IF-A4AJ TCGA-IS-A3K7 
        4.14        12.62        21.37         8.94        25.22       143.41 
TCGA-IW-A3M6 TCGA-JV-A5VF 
       22.62         1.05 

$`AMP PEAK  2(1Q24.3) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L4 TCGA-DX-A23R 
        2.04        27.19        24.49        46.68        29.85        74.66 
TCGA-DX-A23T TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A2IZ TCGA-DX-A2J1 
        5.23        66.87         6.28        27.78         8.55        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 
       43.04         9.01        70.49       108.10        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U8 TCGA-DX-A3UA TCGA-DX-A3UB TCGA-DX-A3UC TCGA-DX-A3UE 
       15.02         4.50        10.68        44.45        39.35        34.88 
TCGA-DX-A48J TCGA-DX-A48L TCGA-DX-A48P TCGA-DX-A48U TCGA-DX-A48V TCGA-DX-A6B9 
        9.73        24.26        14.96        72.72        25.08        11.47 
TCGA-DX-A6BA TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BK TCGA-FX-A3NJ TCGA-FX-A3RE 
       54.87        10.78        16.27        16.18         0.10         0.07 
TCGA-HB-A3YV TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K8 
        4.54         3.22         1.38        31.76        28.21       116.88 
TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-JV-A5VE TCGA-KF-A41W TCGA-LI-A67I 
       13.58        73.28         5.88         6.25        11.70         5.23 
TCGA-MO-A47R TCGA-PC-A5DK 
        0.10        75.48 

  AMP PEAK  2(1Q24.3) MUTATED AMP PEAK  2(1Q24.3) WILD-TYPE 
                         0.07                          0.07 
  AMP PEAK  2(1Q24.3) MUTATED AMP PEAK  2(1Q24.3) WILD-TYPE 
                       143.41                        116.88 
  AMP PEAK  2(1Q24.3) MUTATED AMP PEAK  2(1Q24.3) WILD-TYPE 
                       18.905                        16.685 
[1] "0.1 - 143.4 (18.9)" "0.1 - 116.9 (16.7)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
  "AMP PEAK  2(1Q24.3) MUTATED"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
  "AMP PEAK  2(1Q24.3) MUTATED"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "AMP PEAK  2(1Q24.3) MUTATED"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "AMP PEAK  2(1Q24.3) MUTATED"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
  "AMP PEAK  2(1Q24.3) MUTATED"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
  "AMP PEAK  2(1Q24.3) MUTATED"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "AMP PEAK  2(1Q24.3) MUTATED"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "AMP PEAK  2(1Q24.3) MUTATED"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
  "AMP PEAK  2(1Q24.3) MUTATED"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
  "AMP PEAK  2(1Q24.3) MUTATED"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "AMP PEAK  2(1Q24.3) MUTATED"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "AMP PEAK  2(1Q24.3) MUTATED"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "AMP PEAK  2(1Q24.3) MUTATED" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  2(1Q24.3) WILD-TYPE"   "AMP PEAK  2(1Q24.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"AMP PEAK  2(1Q24.3) WILD-TYPE" "AMP PEAK  2(1Q24.3) WILD-TYPE" 
[1] "hr=" "1"  
D2V2, continuous
D2V3, binary
                               cls
clus                             0  1
  AMP PEAK  2(1Q24.3) MUTATED   15 17
  AMP PEAK  2(1Q24.3) WILD-TYPE 25 25
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  2(1Q24.3) MUTATED     15   17
  AMP PEAK  2(1Q24.3) WILD-TYPE   25   25
        clus
vv       AMP PEAK  2(1Q24.3) MUTATED AMP PEAK  2(1Q24.3) WILD-TYPE
  FEMALE                          15                            25
  MALE                            17                            25

Clustering(3) Variable = AMP PEAK  3(3P11.2) MUTATION ANALYSIS
D3V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  3(3P11.2) MUTATED   12  6
  AMP PEAK  3(3P11.2) WILD-TYPE 46 18
  AMP PEAK  3(3P11.2) MUTATED AMP PEAK  3(3P11.2) WILD-TYPE 
                           18                            64 
  AMP PEAK  3(3P11.2) MUTATED AMP PEAK  3(3P11.2) WILD-TYPE 
                            6                            18 
$`AMP PEAK  3(3P11.2) MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A3LS TCGA-DX-A3LT 
        2.04        12.85        74.66         6.28         9.01        23.08 
TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-DX-A3UF TCGA-DX-A48R TCGA-DX-A6BG TCGA-DX-A6BK 
       42.77         4.50        64.14        26.47         7.33        16.18 
TCGA-HB-A2OT TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-KF-A41W 
       26.89         8.94         3.22        25.22        31.76        11.70 

$`AMP PEAK  3(3P11.2) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 
       14.04        27.19        24.49        18.51        46.68        42.44 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z 
       31.56        29.85         5.23        76.37        66.87        27.78 
TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LU 
       60.30         8.55         9.70        53.26        43.04        70.49 
TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U9 
      108.10        17.10        20.02        15.02        17.75        14.99 
TCGA-DX-A3UA TCGA-DX-A3UB TCGA-DX-A3UC TCGA-DX-A3UD TCGA-DX-A3UE TCGA-DX-A48J 
       10.68        44.45        39.35        28.80        34.88         9.73 
TCGA-DX-A48K TCGA-DX-A48L TCGA-DX-A48N TCGA-DX-A48O TCGA-DX-A48P TCGA-DX-A48U 
       19.30        24.26        12.26        27.22        14.96        72.72 
TCGA-DX-A48V TCGA-DX-A6B9 TCGA-DX-A6BA TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BF 
       25.08        11.47        54.87        10.78        16.27         2.07 
TCGA-DX-A6BH TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A3YV 
        1.68         0.46         0.10         0.07         0.07         4.54 
TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EK TCGA-IS-A3K6 TCGA-IS-A3K7 
        4.14        12.62        21.37         1.38        28.21       143.41 
TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE 
      116.88        13.58        73.28         5.88        22.62         6.25 
TCGA-JV-A5VF TCGA-LI-A67I TCGA-MO-A47R TCGA-PC-A5DK 
        1.05         5.23         0.10        75.48 

  AMP PEAK  3(3P11.2) MUTATED AMP PEAK  3(3P11.2) WILD-TYPE 
                         2.04                          0.07 
  AMP PEAK  3(3P11.2) MUTATED AMP PEAK  3(3P11.2) WILD-TYPE 
                        74.66                        143.41 
  AMP PEAK  3(3P11.2) MUTATED AMP PEAK  3(3P11.2) WILD-TYPE 
                       14.515                        18.905 
[1] "2.0 - 74.7 (14.5)"  "0.1 - 143.4 (18.9)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK  3(3P11.2) WILD-TYPE"   "AMP PEAK  3(3P11.2) MUTATED" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"AMP PEAK  3(3P11.2) WILD-TYPE"   "AMP PEAK  3(3P11.2) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "AMP PEAK  3(3P11.2) MUTATED" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "AMP PEAK  3(3P11.2) MUTATED" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  3(3P11.2) WILD-TYPE"   "AMP PEAK  3(3P11.2) MUTATED" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  3(3P11.2) MUTATED" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"AMP PEAK  3(3P11.2) WILD-TYPE"   "AMP PEAK  3(3P11.2) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
  "AMP PEAK  3(3P11.2) MUTATED" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"AMP PEAK  3(3P11.2) WILD-TYPE"   "AMP PEAK  3(3P11.2) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "AMP PEAK  3(3P11.2) MUTATED" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
  "AMP PEAK  3(3P11.2) MUTATED" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
  "AMP PEAK  3(3P11.2) MUTATED" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK  3(3P11.2) WILD-TYPE"   "AMP PEAK  3(3P11.2) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK  3(3P11.2) MUTATED"   "AMP PEAK  3(3P11.2) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  3(3P11.2) WILD-TYPE"   "AMP PEAK  3(3P11.2) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "AMP PEAK  3(3P11.2) MUTATED" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
  "AMP PEAK  3(3P11.2) MUTATED" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK  3(3P11.2) WILD-TYPE"   "AMP PEAK  3(3P11.2) MUTATED" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"AMP PEAK  3(3P11.2) WILD-TYPE"   "AMP PEAK  3(3P11.2) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "AMP PEAK  3(3P11.2) MUTATED" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "AMP PEAK  3(3P11.2) MUTATED" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  3(3P11.2) WILD-TYPE"   "AMP PEAK  3(3P11.2) MUTATED" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  3(3P11.2) MUTATED" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"AMP PEAK  3(3P11.2) WILD-TYPE"   "AMP PEAK  3(3P11.2) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
  "AMP PEAK  3(3P11.2) MUTATED" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"AMP PEAK  3(3P11.2) WILD-TYPE"   "AMP PEAK  3(3P11.2) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "AMP PEAK  3(3P11.2) MUTATED" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
  "AMP PEAK  3(3P11.2) MUTATED" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
  "AMP PEAK  3(3P11.2) MUTATED" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK  3(3P11.2) WILD-TYPE"   "AMP PEAK  3(3P11.2) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK  3(3P11.2) MUTATED"   "AMP PEAK  3(3P11.2) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  3(3P11.2) WILD-TYPE"   "AMP PEAK  3(3P11.2) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "AMP PEAK  3(3P11.2) MUTATED" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
  "AMP PEAK  3(3P11.2) MUTATED" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK  3(3P11.2) WILD-TYPE"   "AMP PEAK  3(3P11.2) MUTATED" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"AMP PEAK  3(3P11.2) WILD-TYPE"   "AMP PEAK  3(3P11.2) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "AMP PEAK  3(3P11.2) MUTATED" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "AMP PEAK  3(3P11.2) MUTATED" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  3(3P11.2) WILD-TYPE"   "AMP PEAK  3(3P11.2) MUTATED" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  3(3P11.2) MUTATED" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"AMP PEAK  3(3P11.2) WILD-TYPE"   "AMP PEAK  3(3P11.2) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
  "AMP PEAK  3(3P11.2) MUTATED" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"AMP PEAK  3(3P11.2) WILD-TYPE"   "AMP PEAK  3(3P11.2) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "AMP PEAK  3(3P11.2) MUTATED" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
  "AMP PEAK  3(3P11.2) MUTATED" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
  "AMP PEAK  3(3P11.2) MUTATED" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK  3(3P11.2) WILD-TYPE"   "AMP PEAK  3(3P11.2) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK  3(3P11.2) MUTATED"   "AMP PEAK  3(3P11.2) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  3(3P11.2) WILD-TYPE"   "AMP PEAK  3(3P11.2) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "AMP PEAK  3(3P11.2) MUTATED" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
  "AMP PEAK  3(3P11.2) MUTATED" "AMP PEAK  3(3P11.2) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"AMP PEAK  3(3P11.2) WILD-TYPE" "AMP PEAK  3(3P11.2) WILD-TYPE" 
[1] "hr=" "1.5"
D3V2, continuous
D3V3, binary
                               cls
clus                             0  1
  AMP PEAK  3(3P11.2) MUTATED    9  9
  AMP PEAK  3(3P11.2) WILD-TYPE 31 33
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  3(3P11.2) MUTATED      9    9
  AMP PEAK  3(3P11.2) WILD-TYPE   31   33
        clus
vv       AMP PEAK  3(3P11.2) MUTATED AMP PEAK  3(3P11.2) WILD-TYPE
  FEMALE                           9                            31
  MALE                             9                            33

Clustering(4) Variable = AMP PEAK  4(5P15.33) MUTATION ANALYSIS
D4V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  4(5P15.33) MUTATED   23 13
  AMP PEAK  4(5P15.33) WILD-TYPE 35 11
  AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE 
                            36                             46 
  AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE 
                            13                             11 
$`AMP PEAK  4(5P15.33) MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 
       14.04         2.04        27.19        24.49        18.51        46.68 
TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A23Y TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A3LS 
       42.44        31.56         6.28         8.55         9.70         9.01 
TCGA-DX-A3LY TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-DX-A3U9 TCGA-DX-A3UD TCGA-DX-A3UF 
       17.10        42.77         4.50        14.99        28.80        64.14 
TCGA-DX-A48L TCGA-DX-A48P TCGA-DX-A48R TCGA-DX-A6BA TCGA-DX-A6BG TCGA-DX-A6BK 
       24.26        14.96        26.47        54.87         7.33        16.18 
TCGA-FX-A2QS TCGA-HB-A2OT TCGA-HB-A43Z TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IF-A4AJ 
        0.46        26.89         4.14         8.94         3.22        25.22 
TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IW-A3M5 TCGA-JV-A5VF TCGA-LI-A67I TCGA-MO-A47R 
       31.76        28.21         5.88         1.05         5.23         0.10 

$`AMP PEAK  4(5P15.33) WILD-TYPE`
TCGA-DX-A1KY TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V 
       12.85        29.85        74.66         5.23        76.37        66.87 
TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LT TCGA-DX-A3LU 
       27.78        60.30        53.26        43.04        23.08        70.49 
TCGA-DX-A3LW TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3UA TCGA-DX-A3UB 
      108.10        20.02        15.02        17.75        10.68        44.45 
TCGA-DX-A3UC TCGA-DX-A3UE TCGA-DX-A48J TCGA-DX-A48K TCGA-DX-A48N TCGA-DX-A48O 
       39.35        34.88         9.73        19.30        12.26        27.22 
TCGA-DX-A48U TCGA-DX-A48V TCGA-DX-A6B9 TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BF 
       72.72        25.08        11.47        10.78        16.27         2.07 
TCGA-DX-A6BH TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A5W3 
        1.68         0.10         0.07         0.07         4.54        12.62 
TCGA-IE-A4EH TCGA-IE-A4EK TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 
       21.37         1.38       143.41       116.88        13.58        73.28 
TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-KF-A41W TCGA-PC-A5DK 
       22.62         6.25        11.70        75.48 

  AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE 
                          0.10                           0.07 
  AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE 
                         64.14                         143.41 
  AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE 
                        15.585                         20.695 
[1] "0.1 - 64.1 (15.6)"  "0.1 - 143.4 (20.7)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "AMP PEAK  4(5P15.33) MUTATED"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"AMP PEAK  4(5P15.33) WILD-TYPE" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"AMP PEAK  4(5P15.33) WILD-TYPE"   "AMP PEAK  4(5P15.33) MUTATED" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
  "AMP PEAK  4(5P15.33) MUTATED" "AMP PEAK  4(5P15.33) WILD-TYPE" 
[1] "hr=" "2.2"
D4V2, continuous
D4V3, binary
                                cls
clus                              0  1
  AMP PEAK  4(5P15.33) MUTATED   19 17
  AMP PEAK  4(5P15.33) WILD-TYPE 21 25
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  4(5P15.33) MUTATED     19   17
  AMP PEAK  4(5P15.33) WILD-TYPE   21   25
        clus
vv       AMP PEAK  4(5P15.33) MUTATED AMP PEAK  4(5P15.33) WILD-TYPE
  FEMALE                           19                             21
  MALE                             17                             25

Clustering(5) Variable = AMP PEAK  5(6P21.1) MUTATION ANALYSIS
D5V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  5(6P21.1) MUTATED   11  6
  AMP PEAK  5(6P21.1) WILD-TYPE 47 18
  AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE 
                           17                            65 
  AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE 
                            6                            18 
$`AMP PEAK  5(6P21.1) MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1L2 TCGA-DX-A23Y TCGA-DX-A3LU TCGA-DX-A3U9 
        2.04        27.19        42.44         6.28        70.49        14.99 
TCGA-DX-A6BH TCGA-FX-A2QS TCGA-HB-A2OT TCGA-HB-A3YV TCGA-IE-A4EJ TCGA-IS-A3K7 
        1.68         0.46        26.89         4.54         3.22       143.41 
TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-JV-A5VF TCGA-KF-A41W TCGA-LI-A67I 
       13.58         5.88         1.05        11.70         5.23 

$`AMP PEAK  5(6P21.1) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L3 
       14.04        12.85        24.49        18.51        46.68        31.56 
TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z 
       29.85        74.66         5.23        76.37        66.87        27.78 
TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS 
       60.30         8.55         9.70        53.26        43.04         9.01 
TCGA-DX-A3LT TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 
       23.08       108.10        17.10        20.02        15.02        17.75 
TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-DX-A3UA TCGA-DX-A3UB TCGA-DX-A3UC TCGA-DX-A3UD 
       42.77         4.50        10.68        44.45        39.35        28.80 
TCGA-DX-A3UE TCGA-DX-A3UF TCGA-DX-A48J TCGA-DX-A48K TCGA-DX-A48L TCGA-DX-A48N 
       34.88        64.14         9.73        19.30        24.26        12.26 
TCGA-DX-A48O TCGA-DX-A48P TCGA-DX-A48R TCGA-DX-A48U TCGA-DX-A48V TCGA-DX-A6B9 
       27.22        14.96        26.47        72.72        25.08        11.47 
TCGA-DX-A6BA TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BF TCGA-DX-A6BG TCGA-DX-A6BK 
       54.87        10.78        16.27         2.07         7.33        16.18 
TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH 
        0.10         0.07         0.07         4.14        12.62        21.37 
TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K8 
        8.94         1.38        25.22        31.76        28.21       116.88 
TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-MO-A47R TCGA-PC-A5DK 
       73.28        22.62         6.25         0.10        75.48 

  AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE 
                         0.46                          0.07 
  AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE 
                       143.41                        116.88 
  AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE 
                         6.28                         21.37 
[1] "0.5 - 143.4 (6.3)"  "0.1 - 116.9 (21.4)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK  5(6P21.1) WILD-TYPE"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "AMP PEAK  5(6P21.1) MUTATED" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  5(6P21.1) WILD-TYPE"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "AMP PEAK  5(6P21.1) MUTATED" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"AMP PEAK  5(6P21.1) WILD-TYPE"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"AMP PEAK  5(6P21.1) WILD-TYPE"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"AMP PEAK  5(6P21.1) WILD-TYPE"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"AMP PEAK  5(6P21.1) WILD-TYPE"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK  5(6P21.1) WILD-TYPE"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "AMP PEAK  5(6P21.1) MUTATED" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"AMP PEAK  5(6P21.1) WILD-TYPE"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "AMP PEAK  5(6P21.1) MUTATED" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "AMP PEAK  5(6P21.1) MUTATED" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "AMP PEAK  5(6P21.1) MUTATED" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  5(6P21.1) WILD-TYPE"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
  "AMP PEAK  5(6P21.1) MUTATED"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK  5(6P21.1) WILD-TYPE"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "AMP PEAK  5(6P21.1) MUTATED" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  5(6P21.1) WILD-TYPE"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "AMP PEAK  5(6P21.1) MUTATED" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"AMP PEAK  5(6P21.1) WILD-TYPE"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"AMP PEAK  5(6P21.1) WILD-TYPE"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"AMP PEAK  5(6P21.1) WILD-TYPE"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"AMP PEAK  5(6P21.1) WILD-TYPE"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK  5(6P21.1) WILD-TYPE"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "AMP PEAK  5(6P21.1) MUTATED" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"AMP PEAK  5(6P21.1) WILD-TYPE"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "AMP PEAK  5(6P21.1) MUTATED" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "AMP PEAK  5(6P21.1) MUTATED" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "AMP PEAK  5(6P21.1) MUTATED" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  5(6P21.1) WILD-TYPE"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
  "AMP PEAK  5(6P21.1) MUTATED"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK  5(6P21.1) WILD-TYPE"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "AMP PEAK  5(6P21.1) MUTATED" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  5(6P21.1) WILD-TYPE"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "AMP PEAK  5(6P21.1) MUTATED" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"AMP PEAK  5(6P21.1) WILD-TYPE"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"AMP PEAK  5(6P21.1) WILD-TYPE"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"AMP PEAK  5(6P21.1) WILD-TYPE"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"AMP PEAK  5(6P21.1) WILD-TYPE"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK  5(6P21.1) WILD-TYPE"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "AMP PEAK  5(6P21.1) MUTATED" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"AMP PEAK  5(6P21.1) WILD-TYPE"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "AMP PEAK  5(6P21.1) MUTATED" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "AMP PEAK  5(6P21.1) MUTATED" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "AMP PEAK  5(6P21.1) MUTATED" "AMP PEAK  5(6P21.1) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  5(6P21.1) WILD-TYPE"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
  "AMP PEAK  5(6P21.1) MUTATED"   "AMP PEAK  5(6P21.1) MUTATED" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"AMP PEAK  5(6P21.1) WILD-TYPE" "AMP PEAK  5(6P21.1) WILD-TYPE" 
[1] "hr=" "1.9"
D5V2, continuous
D5V3, binary
                               cls
clus                             0  1
  AMP PEAK  5(6P21.1) MUTATED   10  7
  AMP PEAK  5(6P21.1) WILD-TYPE 30 35
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  5(6P21.1) MUTATED     10    7
  AMP PEAK  5(6P21.1) WILD-TYPE   30   35
        clus
vv       AMP PEAK  5(6P21.1) MUTATED AMP PEAK  5(6P21.1) WILD-TYPE
  FEMALE                          10                            30
  MALE                             7                            35

Clustering(6) Variable = AMP PEAK  6(6Q24.3) MUTATION ANALYSIS
D6V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  6(6Q24.3) MUTATED   18  8
  AMP PEAK  6(6Q24.3) WILD-TYPE 40 16
  AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE 
                           26                            56 
  AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE 
                            8                            16 
$`AMP PEAK  6(6Q24.3) MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L4 TCGA-DX-A23T 
        2.04        27.19        24.49        18.51        29.85         5.23 
TCGA-DX-A23Z TCGA-DX-A2J1 TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LY TCGA-DX-A3M1 
       27.78        53.26        23.08        70.49        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U9 TCGA-DX-A48N TCGA-DX-A6BH TCGA-DX-A6BK 
       15.02        17.75        14.99        12.26         1.68        16.18 
TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IE-A4EJ TCGA-IS-A3K7 TCGA-IW-A3M5 
       26.89         4.54         4.14         3.22       143.41         5.88 
TCGA-JV-A5VF TCGA-LI-A67I 
        1.05         5.23 

$`AMP PEAK  6(6Q24.3) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KY TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A23R 
       14.04        12.85        46.68        42.44        31.56        74.66 
TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 
       76.37        66.87         6.28        60.30         8.55         9.70 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LW TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-DX-A3UA 
       43.04         9.01       108.10        42.77         4.50        10.68 
TCGA-DX-A3UB TCGA-DX-A3UC TCGA-DX-A3UD TCGA-DX-A3UE TCGA-DX-A3UF TCGA-DX-A48J 
       44.45        39.35        28.80        34.88        64.14         9.73 
TCGA-DX-A48K TCGA-DX-A48L TCGA-DX-A48O TCGA-DX-A48P TCGA-DX-A48R TCGA-DX-A48U 
       19.30        24.26        27.22        14.96        26.47        72.72 
TCGA-DX-A48V TCGA-DX-A6B9 TCGA-DX-A6BA TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BF 
       25.08        11.47        54.87        10.78        16.27         2.07 
TCGA-DX-A6BG TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A5W3 
        7.33         0.46         0.10         0.07         0.07        12.62 
TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 
       21.37         8.94         1.38        25.22        31.76        28.21 
TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-KF-A41W 
      116.88        13.58        73.28        22.62         6.25        11.70 
TCGA-MO-A47R TCGA-PC-A5DK 
        0.10        75.48 

  AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE 
                         1.05                          0.07 
  AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE 
                       143.41                        116.88 
  AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE 
                       16.640                        21.995 
[1] "1.1 - 143.4 (16.6)" "0.1 - 116.9 (22.0)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "AMP PEAK  6(6Q24.3) MUTATED" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "AMP PEAK  6(6Q24.3) MUTATED"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  6(6Q24.3) MUTATED"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "AMP PEAK  6(6Q24.3) MUTATED"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
  "AMP PEAK  6(6Q24.3) MUTATED" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
  "AMP PEAK  6(6Q24.3) MUTATED" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "AMP PEAK  6(6Q24.3) MUTATED"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "AMP PEAK  6(6Q24.3) MUTATED" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "AMP PEAK  6(6Q24.3) MUTATED" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "AMP PEAK  6(6Q24.3) MUTATED" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "AMP PEAK  6(6Q24.3) MUTATED"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  6(6Q24.3) MUTATED"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "AMP PEAK  6(6Q24.3) MUTATED"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
  "AMP PEAK  6(6Q24.3) MUTATED" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
  "AMP PEAK  6(6Q24.3) MUTATED" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "AMP PEAK  6(6Q24.3) MUTATED"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "AMP PEAK  6(6Q24.3) MUTATED" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "AMP PEAK  6(6Q24.3) MUTATED" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "AMP PEAK  6(6Q24.3) MUTATED" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "AMP PEAK  6(6Q24.3) MUTATED"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  6(6Q24.3) MUTATED"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "AMP PEAK  6(6Q24.3) MUTATED"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
  "AMP PEAK  6(6Q24.3) MUTATED" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
  "AMP PEAK  6(6Q24.3) MUTATED" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "AMP PEAK  6(6Q24.3) MUTATED"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "AMP PEAK  6(6Q24.3) MUTATED" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "AMP PEAK  6(6Q24.3) MUTATED" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"AMP PEAK  6(6Q24.3) WILD-TYPE"   "AMP PEAK  6(6Q24.3) MUTATED" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"AMP PEAK  6(6Q24.3) WILD-TYPE" "AMP PEAK  6(6Q24.3) WILD-TYPE" 
[1] "hr=" "1.4"
D6V2, continuous
D6V3, binary
                               cls
clus                             0  1
  AMP PEAK  6(6Q24.3) MUTATED   11 15
  AMP PEAK  6(6Q24.3) WILD-TYPE 29 27
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  6(6Q24.3) MUTATED     11   15
  AMP PEAK  6(6Q24.3) WILD-TYPE   29   27
        clus
vv       AMP PEAK  6(6Q24.3) MUTATED AMP PEAK  6(6Q24.3) WILD-TYPE
  FEMALE                          11                            29
  MALE                            15                            27

Clustering(7) Variable = AMP PEAK  7(7P21.3) MUTATION ANALYSIS
D7V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  7(7P21.3) MUTATED   17  8
  AMP PEAK  7(7P21.3) WILD-TYPE 41 16
  AMP PEAK  7(7P21.3) MUTATED AMP PEAK  7(7P21.3) WILD-TYPE 
                           25                            57 
  AMP PEAK  7(7P21.3) MUTATED AMP PEAK  7(7P21.3) WILD-TYPE 
                            8                            16 
$`AMP PEAK  7(7P21.3) MUTATED`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L2 TCGA-DX-A23R 
       27.19        12.85        24.49        18.51        42.44        74.66 
TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A3LT TCGA-DX-A3LW TCGA-DX-A3M1 TCGA-DX-A3U6 
        5.23        76.37        23.08       108.10        20.02        17.75 
TCGA-DX-A3U9 TCGA-DX-A3UF TCGA-DX-A48L TCGA-DX-A6BB TCGA-FX-A2QS TCGA-HB-A2OT 
       14.99        64.14        24.26        10.78         0.46        26.89 
TCGA-HB-A3YV TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IF-A4AK TCGA-IS-A3K7 TCGA-IW-A3M5 
        4.54         8.94         3.22        31.76       143.41         5.88 
TCGA-MO-A47R 
        0.10 

$`AMP PEAK  7(7P21.3) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23V 
       14.04         2.04        46.68        31.56        29.85        66.87 
TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 
        6.28        27.78        60.30         8.55         9.70        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3LY TCGA-DX-A3U5 TCGA-DX-A3U7 
       43.04         9.01        70.49        17.10        15.02        42.77 
TCGA-DX-A3U8 TCGA-DX-A3UA TCGA-DX-A3UB TCGA-DX-A3UC TCGA-DX-A3UD TCGA-DX-A3UE 
        4.50        10.68        44.45        39.35        28.80        34.88 
TCGA-DX-A48J TCGA-DX-A48K TCGA-DX-A48N TCGA-DX-A48O TCGA-DX-A48P TCGA-DX-A48R 
        9.73        19.30        12.26        27.22        14.96        26.47 
TCGA-DX-A48U TCGA-DX-A48V TCGA-DX-A6B9 TCGA-DX-A6BA TCGA-DX-A6BE TCGA-DX-A6BF 
       72.72        25.08        11.47        54.87        16.27         2.07 
TCGA-DX-A6BG TCGA-DX-A6BH TCGA-DX-A6BK TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G 
        7.33         1.68        16.18         0.10         0.07         0.07 
TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IS-A3K6 
        4.14        12.62        21.37         1.38        25.22        28.21 
TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF 
      116.88        13.58        73.28        22.62         6.25         1.05 
TCGA-KF-A41W TCGA-LI-A67I TCGA-PC-A5DK 
       11.70         5.23        75.48 

  AMP PEAK  7(7P21.3) MUTATED AMP PEAK  7(7P21.3) WILD-TYPE 
                         0.10                          0.07 
  AMP PEAK  7(7P21.3) MUTATED AMP PEAK  7(7P21.3) WILD-TYPE 
                       143.41                        116.88 
  AMP PEAK  7(7P21.3) MUTATED AMP PEAK  7(7P21.3) WILD-TYPE 
                        20.02                         16.27 
[1] "0.1 - 143.4 (20.0)" "0.1 - 116.9 (16.3)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "AMP PEAK  7(7P21.3) MUTATED"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "AMP PEAK  7(7P21.3) MUTATED"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  7(7P21.3) WILD-TYPE"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "AMP PEAK  7(7P21.3) MUTATED"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"AMP PEAK  7(7P21.3) WILD-TYPE"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"AMP PEAK  7(7P21.3) WILD-TYPE"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"AMP PEAK  7(7P21.3) WILD-TYPE"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"AMP PEAK  7(7P21.3) WILD-TYPE"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK  7(7P21.3) WILD-TYPE"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK  7(7P21.3) MUTATED"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "AMP PEAK  7(7P21.3) MUTATED"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "AMP PEAK  7(7P21.3) MUTATED"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  7(7P21.3) WILD-TYPE"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "AMP PEAK  7(7P21.3) MUTATED"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"AMP PEAK  7(7P21.3) WILD-TYPE"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"AMP PEAK  7(7P21.3) WILD-TYPE"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"AMP PEAK  7(7P21.3) WILD-TYPE"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"AMP PEAK  7(7P21.3) WILD-TYPE"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK  7(7P21.3) WILD-TYPE"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK  7(7P21.3) MUTATED"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "AMP PEAK  7(7P21.3) MUTATED"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "AMP PEAK  7(7P21.3) MUTATED"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK  7(7P21.3) WILD-TYPE"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "AMP PEAK  7(7P21.3) MUTATED"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"AMP PEAK  7(7P21.3) WILD-TYPE"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"AMP PEAK  7(7P21.3) WILD-TYPE"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"AMP PEAK  7(7P21.3) WILD-TYPE"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"AMP PEAK  7(7P21.3) WILD-TYPE"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK  7(7P21.3) WILD-TYPE"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK  7(7P21.3) MUTATED"   "AMP PEAK  7(7P21.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"AMP PEAK  7(7P21.3) WILD-TYPE" "AMP PEAK  7(7P21.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
  "AMP PEAK  7(7P21.3) MUTATED" "AMP PEAK  7(7P21.3) WILD-TYPE" 
[1] "hr=" "1"  
D7V2, continuous
D7V3, binary
                               cls
clus                             0  1
  AMP PEAK  7(7P21.3) MUTATED   14 11
  AMP PEAK  7(7P21.3) WILD-TYPE 26 31
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK  7(7P21.3) MUTATED     14   11
  AMP PEAK  7(7P21.3) WILD-TYPE   26   31
        clus
vv       AMP PEAK  7(7P21.3) MUTATED AMP PEAK  7(7P21.3) WILD-TYPE
  FEMALE                          14                            26
  MALE                            11                            31

Clustering(8) Variable = AMP PEAK  8(8Q21.12) MUTATION ANALYSIS
D8V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  8(8Q21.12) MUTATED   16 12
  AMP PEAK  8(8Q21.12) WILD-TYPE 42 12
  AMP PEAK  8(8Q21.12) MUTATED AMP PEAK  8(8Q21.12) WILD-TYPE 
                            28                             54 
  AMP PEAK  8(8Q21.12) MUTATED AMP PEAK  8(8Q21.12) WILD-TYPE 
                            12                             12 
$`AMP PEAK  8(8Q21.12) MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L2 TCGA-DX-A23R 
       14.04         2.04        12.85        24.49        42.44        74.66 
TCGA-DX-A23T TCGA-DX-A23Z TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U7 TCGA-DX-A3U8 
        5.23        27.78        20.02        15.02        42.77         4.50 
TCGA-DX-A3U9 TCGA-DX-A3UA TCGA-DX-A3UF TCGA-DX-A48N TCGA-DX-A6BA TCGA-FX-A2QS 
       14.99        10.68        64.14        12.26        54.87         0.46 
TCGA-FX-A3NJ TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IE-A4EI TCGA-IF-A4AJ TCGA-IF-A4AK 
        0.10         4.54         4.14         8.94        25.22        31.76 
TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-JV-A5VF TCGA-MO-A47R 
       13.58         5.88         1.05         0.10 

$`AMP PEAK  8(8Q21.12) WILD-TYPE`
TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23U 
       27.19        18.51        46.68        31.56        29.85        76.37 
TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 
       66.87         6.28        60.30         8.55         9.70        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY 
       43.04         9.01        23.08        70.49       108.10        17.10 
TCGA-DX-A3U6 TCGA-DX-A3UB TCGA-DX-A3UC TCGA-DX-A3UD TCGA-DX-A3UE TCGA-DX-A48J 
       17.75        44.45        39.35        28.80        34.88         9.73 
TCGA-DX-A48K TCGA-DX-A48L TCGA-DX-A48O TCGA-DX-A48P TCGA-DX-A48R TCGA-DX-A48U 
       19.30        24.26        27.22        14.96        26.47        72.72 
TCGA-DX-A48V TCGA-DX-A6B9 TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BF TCGA-DX-A6BG 
       25.08        11.47        10.78        16.27         2.07         7.33 
TCGA-DX-A6BH TCGA-DX-A6BK TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A5W3 
        1.68        16.18         0.07         0.07        26.89        12.62 
TCGA-IE-A4EH TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 
       21.37         3.22         1.38        28.21       143.41       116.88 
TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-KF-A41W TCGA-LI-A67I TCGA-PC-A5DK 
       73.28        22.62         6.25        11.70         5.23        75.48 

  AMP PEAK  8(8Q21.12) MUTATED AMP PEAK  8(8Q21.12) WILD-TYPE 
                          0.10                           0.07 
  AMP PEAK  8(8Q21.12) MUTATED AMP PEAK  8(8Q21.12) WILD-TYPE 
                         74.66                         143.41 
  AMP PEAK  8(8Q21.12) MUTATED AMP PEAK  8(8Q21.12) WILD-TYPE 
                        13.215                         22.850 
[1] "0.1 - 74.7 (13.2)"  "0.1 - 143.4 (22.9)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "AMP PEAK  8(8Q21.12) MUTATED"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"AMP PEAK  8(8Q21.12) WILD-TYPE"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "AMP PEAK  8(8Q21.12) MUTATED" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"AMP PEAK  8(8Q21.12) WILD-TYPE"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "AMP PEAK  8(8Q21.12) MUTATED"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"AMP PEAK  8(8Q21.12) WILD-TYPE"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "AMP PEAK  8(8Q21.12) MUTATED"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"AMP PEAK  8(8Q21.12) WILD-TYPE"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
  "AMP PEAK  8(8Q21.12) MUTATED"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "AMP PEAK  8(8Q21.12) MUTATED" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"AMP PEAK  8(8Q21.12) WILD-TYPE"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"AMP PEAK  8(8Q21.12) WILD-TYPE"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "AMP PEAK  8(8Q21.12) MUTATED" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"AMP PEAK  8(8Q21.12) WILD-TYPE"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "AMP PEAK  8(8Q21.12) MUTATED" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "AMP PEAK  8(8Q21.12) MUTATED"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "AMP PEAK  8(8Q21.12) MUTATED" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"AMP PEAK  8(8Q21.12) WILD-TYPE"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "AMP PEAK  8(8Q21.12) MUTATED" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "AMP PEAK  8(8Q21.12) MUTATED" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "AMP PEAK  8(8Q21.12) MUTATED" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"AMP PEAK  8(8Q21.12) WILD-TYPE"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
  "AMP PEAK  8(8Q21.12) MUTATED" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "AMP PEAK  8(8Q21.12) MUTATED"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"AMP PEAK  8(8Q21.12) WILD-TYPE"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "AMP PEAK  8(8Q21.12) MUTATED" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"AMP PEAK  8(8Q21.12) WILD-TYPE"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "AMP PEAK  8(8Q21.12) MUTATED"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"AMP PEAK  8(8Q21.12) WILD-TYPE"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "AMP PEAK  8(8Q21.12) MUTATED"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"AMP PEAK  8(8Q21.12) WILD-TYPE"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
  "AMP PEAK  8(8Q21.12) MUTATED"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "AMP PEAK  8(8Q21.12) MUTATED" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"AMP PEAK  8(8Q21.12) WILD-TYPE"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"AMP PEAK  8(8Q21.12) WILD-TYPE"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "AMP PEAK  8(8Q21.12) MUTATED" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"AMP PEAK  8(8Q21.12) WILD-TYPE"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "AMP PEAK  8(8Q21.12) MUTATED" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "AMP PEAK  8(8Q21.12) MUTATED"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "AMP PEAK  8(8Q21.12) MUTATED" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"AMP PEAK  8(8Q21.12) WILD-TYPE"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "AMP PEAK  8(8Q21.12) MUTATED" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "AMP PEAK  8(8Q21.12) MUTATED" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "AMP PEAK  8(8Q21.12) MUTATED" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"AMP PEAK  8(8Q21.12) WILD-TYPE"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
  "AMP PEAK  8(8Q21.12) MUTATED" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "AMP PEAK  8(8Q21.12) MUTATED"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"AMP PEAK  8(8Q21.12) WILD-TYPE"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "AMP PEAK  8(8Q21.12) MUTATED" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"AMP PEAK  8(8Q21.12) WILD-TYPE"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "AMP PEAK  8(8Q21.12) MUTATED"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"AMP PEAK  8(8Q21.12) WILD-TYPE"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "AMP PEAK  8(8Q21.12) MUTATED"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"AMP PEAK  8(8Q21.12) WILD-TYPE"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
  "AMP PEAK  8(8Q21.12) MUTATED"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "AMP PEAK  8(8Q21.12) MUTATED" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"AMP PEAK  8(8Q21.12) WILD-TYPE"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"AMP PEAK  8(8Q21.12) WILD-TYPE"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "AMP PEAK  8(8Q21.12) MUTATED" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"AMP PEAK  8(8Q21.12) WILD-TYPE"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "AMP PEAK  8(8Q21.12) MUTATED" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "AMP PEAK  8(8Q21.12) MUTATED"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "AMP PEAK  8(8Q21.12) MUTATED" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"AMP PEAK  8(8Q21.12) WILD-TYPE"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "AMP PEAK  8(8Q21.12) MUTATED" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "AMP PEAK  8(8Q21.12) MUTATED" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "AMP PEAK  8(8Q21.12) MUTATED" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"AMP PEAK  8(8Q21.12) WILD-TYPE"   "AMP PEAK  8(8Q21.12) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"AMP PEAK  8(8Q21.12) WILD-TYPE" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
  "AMP PEAK  8(8Q21.12) MUTATED" "AMP PEAK  8(8Q21.12) WILD-TYPE" 
[1] "hr=" "3"  
D8V2, continuous
D8V3, binary
                                cls
clus                              0  1
  AMP PEAK  8(8Q21.12) MUTATED   13 15
  AMP PEAK  8(8Q21.12) WILD-TYPE 27 27
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  8(8Q21.12) MUTATED     13   15
  AMP PEAK  8(8Q21.12) WILD-TYPE   27   27
        clus
vv       AMP PEAK  8(8Q21.12) MUTATED AMP PEAK  8(8Q21.12) WILD-TYPE
  FEMALE                           13                             27
  MALE                             15                             27

Clustering(9) Variable = AMP PEAK  9(11Q22.2) MUTATION ANALYSIS
D9V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  9(11Q22.2) MUTATED   11  3
  AMP PEAK  9(11Q22.2) WILD-TYPE 47 21
  AMP PEAK  9(11Q22.2) MUTATED AMP PEAK  9(11Q22.2) WILD-TYPE 
                            14                             68 
  AMP PEAK  9(11Q22.2) MUTATED AMP PEAK  9(11Q22.2) WILD-TYPE 
                             3                             21 
$`AMP PEAK  9(11Q22.2) MUTATED`
TCGA-DX-A1KX TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A23T TCGA-DX-A23Z TCGA-DX-A2J1 
       27.19        46.68        42.44         5.23        27.78        53.26 
TCGA-DX-A3LT TCGA-DX-A3M1 TCGA-DX-A48K TCGA-DX-A48L TCGA-DX-A48N TCGA-HB-A43Z 
       23.08        20.02        19.30        24.26        12.26         4.14 
TCGA-IE-A4EH TCGA-KF-A41W 
       21.37        11.70 

$`AMP PEAK  9(11Q22.2) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L3 
       14.04         2.04        12.85        24.49        18.51        31.56 
TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A240 
       29.85        74.66        76.37        66.87         6.28        60.30 
TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3LW 
        8.55         9.70        43.04         9.01        70.49       108.10 
TCGA-DX-A3LY TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-DX-A3U9 
       17.10        15.02        17.75        42.77         4.50        14.99 
TCGA-DX-A3UA TCGA-DX-A3UB TCGA-DX-A3UC TCGA-DX-A3UD TCGA-DX-A3UE TCGA-DX-A3UF 
       10.68        44.45        39.35        28.80        34.88        64.14 
TCGA-DX-A48J TCGA-DX-A48O TCGA-DX-A48P TCGA-DX-A48R TCGA-DX-A48U TCGA-DX-A48V 
        9.73        27.22        14.96        26.47        72.72        25.08 
TCGA-DX-A6B9 TCGA-DX-A6BA TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BF TCGA-DX-A6BG 
       11.47        54.87        10.78        16.27         2.07         7.33 
TCGA-DX-A6BH TCGA-DX-A6BK TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G 
        1.68        16.18         0.46         0.10         0.07         0.07 
TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK 
       26.89         4.54        12.62         8.94         3.22         1.38 
TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA 
       25.22        31.76        28.21       143.41       116.88        13.58 
TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-LI-A67I 
       73.28         5.88        22.62         6.25         1.05         5.23 
TCGA-MO-A47R TCGA-PC-A5DK 
        0.10        75.48 

  AMP PEAK  9(11Q22.2) MUTATED AMP PEAK  9(11Q22.2) WILD-TYPE 
                          4.14                           0.07 
  AMP PEAK  9(11Q22.2) MUTATED AMP PEAK  9(11Q22.2) WILD-TYPE 
                         53.26                         143.41 
  AMP PEAK  9(11Q22.2) MUTATED AMP PEAK  9(11Q22.2) WILD-TYPE 
                        22.225                         16.225 
[1] "4.1 - 53.3 (22.2)"  "0.1 - 143.4 (16.2)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "AMP PEAK  9(11Q22.2) MUTATED" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "AMP PEAK  9(11Q22.2) MUTATED"   "AMP PEAK  9(11Q22.2) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"AMP PEAK  9(11Q22.2) WILD-TYPE"   "AMP PEAK  9(11Q22.2) MUTATED" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"AMP PEAK  9(11Q22.2) WILD-TYPE"   "AMP PEAK  9(11Q22.2) MUTATED" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"AMP PEAK  9(11Q22.2) WILD-TYPE"   "AMP PEAK  9(11Q22.2) MUTATED" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "AMP PEAK  9(11Q22.2) MUTATED" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "AMP PEAK  9(11Q22.2) MUTATED" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"AMP PEAK  9(11Q22.2) WILD-TYPE"   "AMP PEAK  9(11Q22.2) MUTATED" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "AMP PEAK  9(11Q22.2) MUTATED"   "AMP PEAK  9(11Q22.2) MUTATED" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"AMP PEAK  9(11Q22.2) WILD-TYPE"   "AMP PEAK  9(11Q22.2) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"AMP PEAK  9(11Q22.2) WILD-TYPE"   "AMP PEAK  9(11Q22.2) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "AMP PEAK  9(11Q22.2) MUTATED" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "AMP PEAK  9(11Q22.2) MUTATED" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "AMP PEAK  9(11Q22.2) MUTATED"   "AMP PEAK  9(11Q22.2) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"AMP PEAK  9(11Q22.2) WILD-TYPE"   "AMP PEAK  9(11Q22.2) MUTATED" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"AMP PEAK  9(11Q22.2) WILD-TYPE"   "AMP PEAK  9(11Q22.2) MUTATED" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"AMP PEAK  9(11Q22.2) WILD-TYPE"   "AMP PEAK  9(11Q22.2) MUTATED" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "AMP PEAK  9(11Q22.2) MUTATED" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "AMP PEAK  9(11Q22.2) MUTATED" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"AMP PEAK  9(11Q22.2) WILD-TYPE"   "AMP PEAK  9(11Q22.2) MUTATED" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "AMP PEAK  9(11Q22.2) MUTATED"   "AMP PEAK  9(11Q22.2) MUTATED" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"AMP PEAK  9(11Q22.2) WILD-TYPE"   "AMP PEAK  9(11Q22.2) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"AMP PEAK  9(11Q22.2) WILD-TYPE"   "AMP PEAK  9(11Q22.2) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "AMP PEAK  9(11Q22.2) MUTATED" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "AMP PEAK  9(11Q22.2) MUTATED" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "AMP PEAK  9(11Q22.2) MUTATED"   "AMP PEAK  9(11Q22.2) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"AMP PEAK  9(11Q22.2) WILD-TYPE"   "AMP PEAK  9(11Q22.2) MUTATED" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"AMP PEAK  9(11Q22.2) WILD-TYPE"   "AMP PEAK  9(11Q22.2) MUTATED" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"AMP PEAK  9(11Q22.2) WILD-TYPE"   "AMP PEAK  9(11Q22.2) MUTATED" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "AMP PEAK  9(11Q22.2) MUTATED" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "AMP PEAK  9(11Q22.2) MUTATED" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"AMP PEAK  9(11Q22.2) WILD-TYPE"   "AMP PEAK  9(11Q22.2) MUTATED" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "AMP PEAK  9(11Q22.2) MUTATED"   "AMP PEAK  9(11Q22.2) MUTATED" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"AMP PEAK  9(11Q22.2) WILD-TYPE"   "AMP PEAK  9(11Q22.2) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"AMP PEAK  9(11Q22.2) WILD-TYPE"   "AMP PEAK  9(11Q22.2) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "AMP PEAK  9(11Q22.2) MUTATED" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"AMP PEAK  9(11Q22.2) WILD-TYPE" "AMP PEAK  9(11Q22.2) WILD-TYPE" 
[1] "hr=" "1.5"
D9V2, continuous
D9V3, binary
                                cls
clus                              0  1
  AMP PEAK  9(11Q22.2) MUTATED    6  8
  AMP PEAK  9(11Q22.2) WILD-TYPE 34 34
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK  9(11Q22.2) MUTATED      6    8
  AMP PEAK  9(11Q22.2) WILD-TYPE   34   34
        clus
vv       AMP PEAK  9(11Q22.2) MUTATED AMP PEAK  9(11Q22.2) WILD-TYPE
  FEMALE                            6                             34
  MALE                              8                             34

Clustering(10) Variable = AMP PEAK 10(12P13.32) MUTATION ANALYSIS
D10V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 10(12P13.32) MUTATED   10  7
  AMP PEAK 10(12P13.32) WILD-TYPE 48 17
  AMP PEAK 10(12P13.32) MUTATED AMP PEAK 10(12P13.32) WILD-TYPE 
                             17                              65 
  AMP PEAK 10(12P13.32) MUTATED AMP PEAK 10(12P13.32) WILD-TYPE 
                              7                              17 
$`AMP PEAK 10(12P13.32) MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A2J1 TCGA-DX-A3LS TCGA-DX-A3LY 
       14.04        27.19        12.85        53.26         9.01        17.10 
TCGA-DX-A3U5 TCGA-DX-A48N TCGA-DX-A48R TCGA-DX-A6BK TCGA-FX-A48G TCGA-HB-A3YV 
       15.02        12.26        26.47        16.18         0.07         4.54 
TCGA-IF-A4AJ TCGA-IS-A3K7 TCGA-IW-A3M5 TCGA-JV-A5VE TCGA-MO-A47R 
       25.22       143.41         5.88         6.25         0.10 

$`AMP PEAK 10(12P13.32) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 
        2.04        24.49        18.51        46.68        42.44        31.56 
TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y 
       29.85        74.66         5.23        76.37        66.87         6.28 
TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J4 TCGA-DX-A3LT 
       27.78        60.30         8.55         9.70        43.04        23.08 
TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3M1 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 
       70.49       108.10        20.02        17.75        42.77         4.50 
TCGA-DX-A3U9 TCGA-DX-A3UA TCGA-DX-A3UB TCGA-DX-A3UC TCGA-DX-A3UD TCGA-DX-A3UE 
       14.99        10.68        44.45        39.35        28.80        34.88 
TCGA-DX-A3UF TCGA-DX-A48J TCGA-DX-A48K TCGA-DX-A48L TCGA-DX-A48O TCGA-DX-A48P 
       64.14         9.73        19.30        24.26        27.22        14.96 
TCGA-DX-A48U TCGA-DX-A48V TCGA-DX-A6B9 TCGA-DX-A6BA TCGA-DX-A6BB TCGA-DX-A6BE 
       72.72        25.08        11.47        54.87        10.78        16.27 
TCGA-DX-A6BF TCGA-DX-A6BG TCGA-DX-A6BH TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE 
        2.07         7.33         1.68         0.46         0.10         0.07 
TCGA-HB-A2OT TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ 
       26.89         4.14        12.62        21.37         8.94         3.22 
TCGA-IE-A4EK TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 
        1.38        31.76        28.21       116.88        13.58        73.28 
TCGA-IW-A3M6 TCGA-JV-A5VF TCGA-KF-A41W TCGA-LI-A67I TCGA-PC-A5DK 
       22.62         1.05        11.70         5.23        75.48 

  AMP PEAK 10(12P13.32) MUTATED AMP PEAK 10(12P13.32) WILD-TYPE 
                           0.07                            0.07 
  AMP PEAK 10(12P13.32) MUTATED AMP PEAK 10(12P13.32) WILD-TYPE 
                         143.41                          116.88 
  AMP PEAK 10(12P13.32) MUTATED AMP PEAK 10(12P13.32) WILD-TYPE 
                          14.04                           21.37 
[1] "0.1 - 143.4 (14.0)" "0.1 - 116.9 (21.4)"
                     TCGA-DX-A1KU                      TCGA-DX-A1KW 
  "AMP PEAK 10(12P13.32) MUTATED" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A1KX                      TCGA-DX-A1KY 
  "AMP PEAK 10(12P13.32) MUTATED"   "AMP PEAK 10(12P13.32) MUTATED" 
                     TCGA-DX-A1KZ                      TCGA-DX-A1L0 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A1L1                      TCGA-DX-A1L2 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A1L3                      TCGA-DX-A1L4 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A23R                      TCGA-DX-A23T 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A23U                      TCGA-DX-A23V 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A23Y                      TCGA-DX-A23Z 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A240                      TCGA-DX-A2IZ 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A2J0                      TCGA-DX-A2J1 
"AMP PEAK 10(12P13.32) WILD-TYPE"   "AMP PEAK 10(12P13.32) MUTATED" 
                     TCGA-DX-A2J4                      TCGA-DX-A3LS 
"AMP PEAK 10(12P13.32) WILD-TYPE"   "AMP PEAK 10(12P13.32) MUTATED" 
                     TCGA-DX-A3LT                      TCGA-DX-A3LU 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A3LW                      TCGA-DX-A3LY 
"AMP PEAK 10(12P13.32) WILD-TYPE"   "AMP PEAK 10(12P13.32) MUTATED" 
                     TCGA-DX-A3M1                      TCGA-DX-A3U5 
"AMP PEAK 10(12P13.32) WILD-TYPE"   "AMP PEAK 10(12P13.32) MUTATED" 
                     TCGA-DX-A3U6                      TCGA-DX-A3U7 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A3U8                      TCGA-DX-A3U9 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A3UA                      TCGA-DX-A3UB 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A3UC                      TCGA-DX-A3UD 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A3UE                      TCGA-DX-A3UF 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A48J                      TCGA-DX-A48K 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A48L                      TCGA-DX-A48N 
"AMP PEAK 10(12P13.32) WILD-TYPE"   "AMP PEAK 10(12P13.32) MUTATED" 
                     TCGA-DX-A48O                      TCGA-DX-A48P 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A48R                      TCGA-DX-A48U 
  "AMP PEAK 10(12P13.32) MUTATED" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A48V                      TCGA-DX-A6B9 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A6BA                      TCGA-DX-A6BB 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A6BE                      TCGA-DX-A6BF 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A6BG                      TCGA-DX-A6BH 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A6BK                      TCGA-FX-A2QS 
  "AMP PEAK 10(12P13.32) MUTATED" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-FX-A3NJ                      TCGA-FX-A3RE 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-FX-A48G                      TCGA-HB-A2OT 
  "AMP PEAK 10(12P13.32) MUTATED" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-HB-A3YV                      TCGA-HB-A43Z 
  "AMP PEAK 10(12P13.32) MUTATED" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-HB-A5W3                      TCGA-IE-A4EH 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-IE-A4EI                      TCGA-IE-A4EJ 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-IE-A4EK                      TCGA-IF-A4AJ 
"AMP PEAK 10(12P13.32) WILD-TYPE"   "AMP PEAK 10(12P13.32) MUTATED" 
                     TCGA-IF-A4AK                      TCGA-IS-A3K6 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-IS-A3K7                      TCGA-IS-A3K8 
  "AMP PEAK 10(12P13.32) MUTATED" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-IS-A3KA                      TCGA-IW-A3M4 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-IW-A3M5                      TCGA-IW-A3M6 
  "AMP PEAK 10(12P13.32) MUTATED" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-JV-A5VE                      TCGA-JV-A5VF 
  "AMP PEAK 10(12P13.32) MUTATED" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-KF-A41W                      TCGA-LI-A67I 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-MO-A47R                      TCGA-PC-A5DK 
  "AMP PEAK 10(12P13.32) MUTATED" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A1KU                      TCGA-DX-A1KW 
  "AMP PEAK 10(12P13.32) MUTATED" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A1KX                      TCGA-DX-A1KY 
  "AMP PEAK 10(12P13.32) MUTATED"   "AMP PEAK 10(12P13.32) MUTATED" 
                     TCGA-DX-A1KZ                      TCGA-DX-A1L0 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A1L1                      TCGA-DX-A1L2 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A1L3                      TCGA-DX-A1L4 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A23R                      TCGA-DX-A23T 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A23U                      TCGA-DX-A23V 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A23Y                      TCGA-DX-A23Z 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A240                      TCGA-DX-A2IZ 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A2J0                      TCGA-DX-A2J1 
"AMP PEAK 10(12P13.32) WILD-TYPE"   "AMP PEAK 10(12P13.32) MUTATED" 
                     TCGA-DX-A2J4                      TCGA-DX-A3LS 
"AMP PEAK 10(12P13.32) WILD-TYPE"   "AMP PEAK 10(12P13.32) MUTATED" 
                     TCGA-DX-A3LT                      TCGA-DX-A3LU 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A3LW                      TCGA-DX-A3LY 
"AMP PEAK 10(12P13.32) WILD-TYPE"   "AMP PEAK 10(12P13.32) MUTATED" 
                     TCGA-DX-A3M1                      TCGA-DX-A3U5 
"AMP PEAK 10(12P13.32) WILD-TYPE"   "AMP PEAK 10(12P13.32) MUTATED" 
                     TCGA-DX-A3U6                      TCGA-DX-A3U7 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A3U8                      TCGA-DX-A3U9 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A3UA                      TCGA-DX-A3UB 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A3UC                      TCGA-DX-A3UD 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A3UE                      TCGA-DX-A3UF 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A48J                      TCGA-DX-A48K 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A48L                      TCGA-DX-A48N 
"AMP PEAK 10(12P13.32) WILD-TYPE"   "AMP PEAK 10(12P13.32) MUTATED" 
                     TCGA-DX-A48O                      TCGA-DX-A48P 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A48R                      TCGA-DX-A48U 
  "AMP PEAK 10(12P13.32) MUTATED" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A48V                      TCGA-DX-A6B9 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A6BA                      TCGA-DX-A6BB 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A6BE                      TCGA-DX-A6BF 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A6BG                      TCGA-DX-A6BH 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A6BK                      TCGA-FX-A2QS 
  "AMP PEAK 10(12P13.32) MUTATED" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-FX-A3NJ                      TCGA-FX-A3RE 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-FX-A48G                      TCGA-HB-A2OT 
  "AMP PEAK 10(12P13.32) MUTATED" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-HB-A3YV                      TCGA-HB-A43Z 
  "AMP PEAK 10(12P13.32) MUTATED" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-HB-A5W3                      TCGA-IE-A4EH 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-IE-A4EI                      TCGA-IE-A4EJ 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-IE-A4EK                      TCGA-IF-A4AJ 
"AMP PEAK 10(12P13.32) WILD-TYPE"   "AMP PEAK 10(12P13.32) MUTATED" 
                     TCGA-IF-A4AK                      TCGA-IS-A3K6 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-IS-A3K7                      TCGA-IS-A3K8 
  "AMP PEAK 10(12P13.32) MUTATED" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-IS-A3KA                      TCGA-IW-A3M4 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-IW-A3M5                      TCGA-IW-A3M6 
  "AMP PEAK 10(12P13.32) MUTATED" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-JV-A5VE                      TCGA-JV-A5VF 
  "AMP PEAK 10(12P13.32) MUTATED" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-KF-A41W                      TCGA-LI-A67I 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-MO-A47R                      TCGA-PC-A5DK 
  "AMP PEAK 10(12P13.32) MUTATED" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A1KU                      TCGA-DX-A1KW 
  "AMP PEAK 10(12P13.32) MUTATED" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A1KX                      TCGA-DX-A1KY 
  "AMP PEAK 10(12P13.32) MUTATED"   "AMP PEAK 10(12P13.32) MUTATED" 
                     TCGA-DX-A1KZ                      TCGA-DX-A1L0 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A1L1                      TCGA-DX-A1L2 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A1L3                      TCGA-DX-A1L4 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A23R                      TCGA-DX-A23T 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A23U                      TCGA-DX-A23V 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A23Y                      TCGA-DX-A23Z 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A240                      TCGA-DX-A2IZ 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A2J0                      TCGA-DX-A2J1 
"AMP PEAK 10(12P13.32) WILD-TYPE"   "AMP PEAK 10(12P13.32) MUTATED" 
                     TCGA-DX-A2J4                      TCGA-DX-A3LS 
"AMP PEAK 10(12P13.32) WILD-TYPE"   "AMP PEAK 10(12P13.32) MUTATED" 
                     TCGA-DX-A3LT                      TCGA-DX-A3LU 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A3LW                      TCGA-DX-A3LY 
"AMP PEAK 10(12P13.32) WILD-TYPE"   "AMP PEAK 10(12P13.32) MUTATED" 
                     TCGA-DX-A3M1                      TCGA-DX-A3U5 
"AMP PEAK 10(12P13.32) WILD-TYPE"   "AMP PEAK 10(12P13.32) MUTATED" 
                     TCGA-DX-A3U6                      TCGA-DX-A3U7 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A3U8                      TCGA-DX-A3U9 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A3UA                      TCGA-DX-A3UB 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A3UC                      TCGA-DX-A3UD 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A3UE                      TCGA-DX-A3UF 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A48J                      TCGA-DX-A48K 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A48L                      TCGA-DX-A48N 
"AMP PEAK 10(12P13.32) WILD-TYPE"   "AMP PEAK 10(12P13.32) MUTATED" 
                     TCGA-DX-A48O                      TCGA-DX-A48P 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A48R                      TCGA-DX-A48U 
  "AMP PEAK 10(12P13.32) MUTATED" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A48V                      TCGA-DX-A6B9 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A6BA                      TCGA-DX-A6BB 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A6BE                      TCGA-DX-A6BF 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A6BG                      TCGA-DX-A6BH 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-DX-A6BK                      TCGA-FX-A2QS 
  "AMP PEAK 10(12P13.32) MUTATED" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-FX-A3NJ                      TCGA-FX-A3RE 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-FX-A48G                      TCGA-HB-A2OT 
  "AMP PEAK 10(12P13.32) MUTATED" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-HB-A3YV                      TCGA-HB-A43Z 
  "AMP PEAK 10(12P13.32) MUTATED" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-HB-A5W3                      TCGA-IE-A4EH 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-IE-A4EI                      TCGA-IE-A4EJ 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-IE-A4EK                      TCGA-IF-A4AJ 
"AMP PEAK 10(12P13.32) WILD-TYPE"   "AMP PEAK 10(12P13.32) MUTATED" 
                     TCGA-IF-A4AK                      TCGA-IS-A3K6 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-IS-A3K7                      TCGA-IS-A3K8 
  "AMP PEAK 10(12P13.32) MUTATED" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-IS-A3KA                      TCGA-IW-A3M4 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-IW-A3M5                      TCGA-IW-A3M6 
  "AMP PEAK 10(12P13.32) MUTATED" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-JV-A5VE                      TCGA-JV-A5VF 
  "AMP PEAK 10(12P13.32) MUTATED" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-KF-A41W                      TCGA-LI-A67I 
"AMP PEAK 10(12P13.32) WILD-TYPE" "AMP PEAK 10(12P13.32) WILD-TYPE" 
                     TCGA-MO-A47R                      TCGA-PC-A5DK 
  "AMP PEAK 10(12P13.32) MUTATED" "AMP PEAK 10(12P13.32) WILD-TYPE" 
[1] "hr=" "2"  
D10V2, continuous
D10V3, binary
                                 cls
clus                               0  1
  AMP PEAK 10(12P13.32) MUTATED    8  9
  AMP PEAK 10(12P13.32) WILD-TYPE 32 33
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  AMP PEAK 10(12P13.32) MUTATED      8    9
  AMP PEAK 10(12P13.32) WILD-TYPE   32   33
        clus
vv       AMP PEAK 10(12P13.32) MUTATED AMP PEAK 10(12P13.32) WILD-TYPE
  FEMALE                             8                              32
  MALE                               9                              33

Clustering(11) Variable = AMP PEAK 11(12Q15) MUTATION ANALYSIS
D11V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 11(12Q15) MUTATED   27 10
  AMP PEAK 11(12Q15) WILD-TYPE 31 14
  AMP PEAK 11(12Q15) MUTATED AMP PEAK 11(12Q15) WILD-TYPE 
                          37                           45 
  AMP PEAK 11(12Q15) MUTATED AMP PEAK 11(12Q15) WILD-TYPE 
                          10                           14 
$`AMP PEAK 11(12Q15) MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 
       14.04         2.04        12.85        24.49        18.51        46.68 
TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23V 
       42.44        31.56        29.85        74.66         5.23        66.87 
TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 
        6.28        27.78        60.30         8.55         9.70        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY 
       43.04         9.01        23.08        70.49       108.10        17.10 
TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A48N TCGA-DX-A6BE TCGA-DX-A6BF 
       20.02        15.02        17.75        12.26        16.27         2.07 
TCGA-DX-A6BG TCGA-DX-A6BH TCGA-FX-A2QS TCGA-HB-A3YV TCGA-IE-A4EJ TCGA-KF-A41W 
        7.33         1.68         0.46         4.54         3.22        11.70 
TCGA-MO-A47R 
        0.10 

$`AMP PEAK 11(12Q15) WILD-TYPE`
TCGA-DX-A1KX TCGA-DX-A23U TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-DX-A3U9 TCGA-DX-A3UA 
       27.19        76.37        42.77         4.50        14.99        10.68 
TCGA-DX-A3UB TCGA-DX-A3UC TCGA-DX-A3UD TCGA-DX-A3UE TCGA-DX-A3UF TCGA-DX-A48J 
       44.45        39.35        28.80        34.88        64.14         9.73 
TCGA-DX-A48K TCGA-DX-A48L TCGA-DX-A48O TCGA-DX-A48P TCGA-DX-A48R TCGA-DX-A48U 
       19.30        24.26        27.22        14.96        26.47        72.72 
TCGA-DX-A48V TCGA-DX-A6B9 TCGA-DX-A6BA TCGA-DX-A6BB TCGA-DX-A6BK TCGA-FX-A3NJ 
       25.08        11.47        54.87        10.78        16.18         0.10 
TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH 
        0.07         0.07        26.89         4.14        12.62        21.37 
TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 
        8.94         1.38        25.22        31.76        28.21       143.41 
TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE 
      116.88        13.58        73.28         5.88        22.62         6.25 
TCGA-JV-A5VF TCGA-LI-A67I TCGA-PC-A5DK 
        1.05         5.23        75.48 

  AMP PEAK 11(12Q15) MUTATED AMP PEAK 11(12Q15) WILD-TYPE 
                        0.10                         0.07 
  AMP PEAK 11(12Q15) MUTATED AMP PEAK 11(12Q15) WILD-TYPE 
                      108.10                       143.41 
  AMP PEAK 11(12Q15) MUTATED AMP PEAK 11(12Q15) WILD-TYPE 
                       16.27                        22.62 
[1] "0.1 - 108.1 (16.3)" "0.1 - 143.4 (22.6)"
                  TCGA-DX-A1KU                   TCGA-DX-A1KW 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A1KX                   TCGA-DX-A1KY 
"AMP PEAK 11(12Q15) WILD-TYPE"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A1KZ                   TCGA-DX-A1L0 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A1L1                   TCGA-DX-A1L2 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A1L3                   TCGA-DX-A1L4 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A23R                   TCGA-DX-A23T 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A23U                   TCGA-DX-A23V 
"AMP PEAK 11(12Q15) WILD-TYPE"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A23Y                   TCGA-DX-A23Z 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A240                   TCGA-DX-A2IZ 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A2J0                   TCGA-DX-A2J1 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A2J4                   TCGA-DX-A3LS 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A3LT                   TCGA-DX-A3LU 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A3LW                   TCGA-DX-A3LY 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A3M1                   TCGA-DX-A3U5 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A3U6                   TCGA-DX-A3U7 
  "AMP PEAK 11(12Q15) MUTATED" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A3U8                   TCGA-DX-A3U9 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A3UA                   TCGA-DX-A3UB 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A3UC                   TCGA-DX-A3UD 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A3UE                   TCGA-DX-A3UF 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A48J                   TCGA-DX-A48K 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A48L                   TCGA-DX-A48N 
"AMP PEAK 11(12Q15) WILD-TYPE"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A48O                   TCGA-DX-A48P 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A48R                   TCGA-DX-A48U 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A48V                   TCGA-DX-A6B9 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A6BA                   TCGA-DX-A6BB 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A6BE                   TCGA-DX-A6BF 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A6BG                   TCGA-DX-A6BH 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A6BK                   TCGA-FX-A2QS 
"AMP PEAK 11(12Q15) WILD-TYPE"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-FX-A3NJ                   TCGA-FX-A3RE 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-FX-A48G                   TCGA-HB-A2OT 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-HB-A3YV                   TCGA-HB-A43Z 
  "AMP PEAK 11(12Q15) MUTATED" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-HB-A5W3                   TCGA-IE-A4EH 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-IE-A4EI                   TCGA-IE-A4EJ 
"AMP PEAK 11(12Q15) WILD-TYPE"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-IE-A4EK                   TCGA-IF-A4AJ 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-IF-A4AK                   TCGA-IS-A3K6 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-IS-A3K7                   TCGA-IS-A3K8 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-IS-A3KA                   TCGA-IW-A3M4 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-IW-A3M6 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-JV-A5VE                   TCGA-JV-A5VF 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-KF-A41W                   TCGA-LI-A67I 
  "AMP PEAK 11(12Q15) MUTATED" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-MO-A47R                   TCGA-PC-A5DK 
  "AMP PEAK 11(12Q15) MUTATED" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A1KU                   TCGA-DX-A1KW 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A1KX                   TCGA-DX-A1KY 
"AMP PEAK 11(12Q15) WILD-TYPE"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A1KZ                   TCGA-DX-A1L0 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A1L1                   TCGA-DX-A1L2 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A1L3                   TCGA-DX-A1L4 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A23R                   TCGA-DX-A23T 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A23U                   TCGA-DX-A23V 
"AMP PEAK 11(12Q15) WILD-TYPE"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A23Y                   TCGA-DX-A23Z 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A240                   TCGA-DX-A2IZ 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A2J0                   TCGA-DX-A2J1 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A2J4                   TCGA-DX-A3LS 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A3LT                   TCGA-DX-A3LU 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A3LW                   TCGA-DX-A3LY 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A3M1                   TCGA-DX-A3U5 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A3U6                   TCGA-DX-A3U7 
  "AMP PEAK 11(12Q15) MUTATED" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A3U8                   TCGA-DX-A3U9 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A3UA                   TCGA-DX-A3UB 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A3UC                   TCGA-DX-A3UD 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A3UE                   TCGA-DX-A3UF 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A48J                   TCGA-DX-A48K 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A48L                   TCGA-DX-A48N 
"AMP PEAK 11(12Q15) WILD-TYPE"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A48O                   TCGA-DX-A48P 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A48R                   TCGA-DX-A48U 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A48V                   TCGA-DX-A6B9 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A6BA                   TCGA-DX-A6BB 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A6BE                   TCGA-DX-A6BF 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A6BG                   TCGA-DX-A6BH 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A6BK                   TCGA-FX-A2QS 
"AMP PEAK 11(12Q15) WILD-TYPE"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-FX-A3NJ                   TCGA-FX-A3RE 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-FX-A48G                   TCGA-HB-A2OT 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-HB-A3YV                   TCGA-HB-A43Z 
  "AMP PEAK 11(12Q15) MUTATED" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-HB-A5W3                   TCGA-IE-A4EH 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-IE-A4EI                   TCGA-IE-A4EJ 
"AMP PEAK 11(12Q15) WILD-TYPE"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-IE-A4EK                   TCGA-IF-A4AJ 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-IF-A4AK                   TCGA-IS-A3K6 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-IS-A3K7                   TCGA-IS-A3K8 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-IS-A3KA                   TCGA-IW-A3M4 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-IW-A3M6 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-JV-A5VE                   TCGA-JV-A5VF 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-KF-A41W                   TCGA-LI-A67I 
  "AMP PEAK 11(12Q15) MUTATED" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-MO-A47R                   TCGA-PC-A5DK 
  "AMP PEAK 11(12Q15) MUTATED" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A1KU                   TCGA-DX-A1KW 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A1KX                   TCGA-DX-A1KY 
"AMP PEAK 11(12Q15) WILD-TYPE"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A1KZ                   TCGA-DX-A1L0 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A1L1                   TCGA-DX-A1L2 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A1L3                   TCGA-DX-A1L4 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A23R                   TCGA-DX-A23T 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A23U                   TCGA-DX-A23V 
"AMP PEAK 11(12Q15) WILD-TYPE"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A23Y                   TCGA-DX-A23Z 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A240                   TCGA-DX-A2IZ 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A2J0                   TCGA-DX-A2J1 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A2J4                   TCGA-DX-A3LS 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A3LT                   TCGA-DX-A3LU 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A3LW                   TCGA-DX-A3LY 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A3M1                   TCGA-DX-A3U5 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A3U6                   TCGA-DX-A3U7 
  "AMP PEAK 11(12Q15) MUTATED" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A3U8                   TCGA-DX-A3U9 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A3UA                   TCGA-DX-A3UB 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A3UC                   TCGA-DX-A3UD 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A3UE                   TCGA-DX-A3UF 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A48J                   TCGA-DX-A48K 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A48L                   TCGA-DX-A48N 
"AMP PEAK 11(12Q15) WILD-TYPE"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A48O                   TCGA-DX-A48P 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A48R                   TCGA-DX-A48U 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A48V                   TCGA-DX-A6B9 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A6BA                   TCGA-DX-A6BB 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-DX-A6BE                   TCGA-DX-A6BF 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A6BG                   TCGA-DX-A6BH 
  "AMP PEAK 11(12Q15) MUTATED"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-DX-A6BK                   TCGA-FX-A2QS 
"AMP PEAK 11(12Q15) WILD-TYPE"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-FX-A3NJ                   TCGA-FX-A3RE 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-FX-A48G                   TCGA-HB-A2OT 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-HB-A3YV                   TCGA-HB-A43Z 
  "AMP PEAK 11(12Q15) MUTATED" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-HB-A5W3                   TCGA-IE-A4EH 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-IE-A4EI                   TCGA-IE-A4EJ 
"AMP PEAK 11(12Q15) WILD-TYPE"   "AMP PEAK 11(12Q15) MUTATED" 
                  TCGA-IE-A4EK                   TCGA-IF-A4AJ 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-IF-A4AK                   TCGA-IS-A3K6 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-IS-A3K7                   TCGA-IS-A3K8 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-IS-A3KA                   TCGA-IW-A3M4 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-IW-A3M6 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-JV-A5VE                   TCGA-JV-A5VF 
"AMP PEAK 11(12Q15) WILD-TYPE" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-KF-A41W                   TCGA-LI-A67I 
  "AMP PEAK 11(12Q15) MUTATED" "AMP PEAK 11(12Q15) WILD-TYPE" 
                  TCGA-MO-A47R                   TCGA-PC-A5DK 
  "AMP PEAK 11(12Q15) MUTATED" "AMP PEAK 11(12Q15) WILD-TYPE" 
[1] "hr=" "1"  
D11V2, continuous
D11V3, binary
                              cls
clus                            0  1
  AMP PEAK 11(12Q15) MUTATED   11 26
  AMP PEAK 11(12Q15) WILD-TYPE 29 16
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 11(12Q15) MUTATED     11   26
  AMP PEAK 11(12Q15) WILD-TYPE   29   16
        clus
vv       AMP PEAK 11(12Q15) MUTATED AMP PEAK 11(12Q15) WILD-TYPE
  FEMALE                         11                           29
  MALE                           26                           16

Clustering(12) Variable = AMP PEAK 12(17P12) MUTATION ANALYSIS
D12V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 12(17P12) MUTATED   19  8
  AMP PEAK 12(17P12) WILD-TYPE 39 16
  AMP PEAK 12(17P12) MUTATED AMP PEAK 12(17P12) WILD-TYPE 
                          27                           55 
  AMP PEAK 12(17P12) MUTATED AMP PEAK 12(17P12) WILD-TYPE 
                           8                           16 
$`AMP PEAK 12(17P12) MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A23Y TCGA-DX-A3U5 
        2.04        12.85        46.68        42.44         6.28        15.02 
TCGA-DX-A3UC TCGA-DX-A3UE TCGA-DX-A3UF TCGA-DX-A48K TCGA-DX-A48L TCGA-DX-A48N 
       39.35        34.88        64.14        19.30        24.26        12.26 
TCGA-DX-A48O TCGA-DX-A48R TCGA-DX-A6BA TCGA-DX-A6BK TCGA-FX-A3RE TCGA-FX-A48G 
       27.22        26.47        54.87        16.18         0.07         0.07 
TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EJ TCGA-IF-A4AJ TCGA-IF-A4AK 
        4.54        12.62        21.37         3.22        25.22        31.76 
TCGA-KF-A41W TCGA-LI-A67I TCGA-MO-A47R 
       11.70         5.23         0.10 

$`AMP PEAK 12(17P12) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L3 TCGA-DX-A1L4 
       14.04        27.19        24.49        18.51        31.56        29.85 
TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 
       74.66         5.23        76.37        66.87        27.78        60.30 
TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT 
        8.55         9.70        53.26        43.04         9.01        23.08 
TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U6 TCGA-DX-A3U7 
       70.49       108.10        17.10        20.02        17.75        42.77 
TCGA-DX-A3U8 TCGA-DX-A3U9 TCGA-DX-A3UA TCGA-DX-A3UB TCGA-DX-A3UD TCGA-DX-A48J 
        4.50        14.99        10.68        44.45        28.80         9.73 
TCGA-DX-A48P TCGA-DX-A48U TCGA-DX-A48V TCGA-DX-A6B9 TCGA-DX-A6BB TCGA-DX-A6BE 
       14.96        72.72        25.08        11.47        10.78        16.27 
TCGA-DX-A6BF TCGA-DX-A6BG TCGA-DX-A6BH TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-HB-A2OT 
        2.07         7.33         1.68         0.46         0.10        26.89 
TCGA-HB-A43Z TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 
        4.14         8.94         1.38        28.21       143.41       116.88 
TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF 
       13.58        73.28         5.88        22.62         6.25         1.05 
TCGA-PC-A5DK 
       75.48 

  AMP PEAK 12(17P12) MUTATED AMP PEAK 12(17P12) WILD-TYPE 
                        0.07                         0.10 
  AMP PEAK 12(17P12) MUTATED AMP PEAK 12(17P12) WILD-TYPE 
                       64.14                       143.41 
  AMP PEAK 12(17P12) MUTATED AMP PEAK 12(17P12) WILD-TYPE 
                       16.18                        18.51 
[1] "0.1 - 64.1 (16.2)"  "0.1 - 143.4 (18.5)"
                  TCGA-DX-A1KU                   TCGA-DX-A1KW 
"AMP PEAK 12(17P12) WILD-TYPE"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-DX-A1KX                   TCGA-DX-A1KY 
"AMP PEAK 12(17P12) WILD-TYPE"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-DX-A1KZ                   TCGA-DX-A1L0 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A1L1                   TCGA-DX-A1L2 
  "AMP PEAK 12(17P12) MUTATED"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-DX-A1L3                   TCGA-DX-A1L4 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A23R                   TCGA-DX-A23T 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A23U                   TCGA-DX-A23V 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A23Y                   TCGA-DX-A23Z 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A240                   TCGA-DX-A2IZ 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A2J0                   TCGA-DX-A2J1 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A2J4                   TCGA-DX-A3LS 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A3LT                   TCGA-DX-A3LU 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A3LW                   TCGA-DX-A3LY 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A3M1                   TCGA-DX-A3U5 
"AMP PEAK 12(17P12) WILD-TYPE"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-DX-A3U6                   TCGA-DX-A3U7 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A3U8                   TCGA-DX-A3U9 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A3UA                   TCGA-DX-A3UB 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A3UC                   TCGA-DX-A3UD 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A3UE                   TCGA-DX-A3UF 
  "AMP PEAK 12(17P12) MUTATED"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-DX-A48J                   TCGA-DX-A48K 
"AMP PEAK 12(17P12) WILD-TYPE"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-DX-A48L                   TCGA-DX-A48N 
  "AMP PEAK 12(17P12) MUTATED"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-DX-A48O                   TCGA-DX-A48P 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A48R                   TCGA-DX-A48U 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A48V                   TCGA-DX-A6B9 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A6BA                   TCGA-DX-A6BB 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A6BE                   TCGA-DX-A6BF 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A6BG                   TCGA-DX-A6BH 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A6BK                   TCGA-FX-A2QS 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-FX-A3NJ                   TCGA-FX-A3RE 
"AMP PEAK 12(17P12) WILD-TYPE"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-FX-A48G                   TCGA-HB-A2OT 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-HB-A3YV                   TCGA-HB-A43Z 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-HB-A5W3                   TCGA-IE-A4EH 
  "AMP PEAK 12(17P12) MUTATED"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-IE-A4EI                   TCGA-IE-A4EJ 
"AMP PEAK 12(17P12) WILD-TYPE"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-IE-A4EK                   TCGA-IF-A4AJ 
"AMP PEAK 12(17P12) WILD-TYPE"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-IF-A4AK                   TCGA-IS-A3K6 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-IS-A3K7                   TCGA-IS-A3K8 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-IS-A3KA                   TCGA-IW-A3M4 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-IW-A3M6 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-JV-A5VE                   TCGA-JV-A5VF 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-KF-A41W                   TCGA-LI-A67I 
  "AMP PEAK 12(17P12) MUTATED"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-MO-A47R                   TCGA-PC-A5DK 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A1KU                   TCGA-DX-A1KW 
"AMP PEAK 12(17P12) WILD-TYPE"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-DX-A1KX                   TCGA-DX-A1KY 
"AMP PEAK 12(17P12) WILD-TYPE"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-DX-A1KZ                   TCGA-DX-A1L0 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A1L1                   TCGA-DX-A1L2 
  "AMP PEAK 12(17P12) MUTATED"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-DX-A1L3                   TCGA-DX-A1L4 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A23R                   TCGA-DX-A23T 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A23U                   TCGA-DX-A23V 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A23Y                   TCGA-DX-A23Z 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A240                   TCGA-DX-A2IZ 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A2J0                   TCGA-DX-A2J1 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A2J4                   TCGA-DX-A3LS 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A3LT                   TCGA-DX-A3LU 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A3LW                   TCGA-DX-A3LY 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A3M1                   TCGA-DX-A3U5 
"AMP PEAK 12(17P12) WILD-TYPE"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-DX-A3U6                   TCGA-DX-A3U7 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A3U8                   TCGA-DX-A3U9 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A3UA                   TCGA-DX-A3UB 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A3UC                   TCGA-DX-A3UD 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A3UE                   TCGA-DX-A3UF 
  "AMP PEAK 12(17P12) MUTATED"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-DX-A48J                   TCGA-DX-A48K 
"AMP PEAK 12(17P12) WILD-TYPE"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-DX-A48L                   TCGA-DX-A48N 
  "AMP PEAK 12(17P12) MUTATED"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-DX-A48O                   TCGA-DX-A48P 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A48R                   TCGA-DX-A48U 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A48V                   TCGA-DX-A6B9 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A6BA                   TCGA-DX-A6BB 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A6BE                   TCGA-DX-A6BF 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A6BG                   TCGA-DX-A6BH 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A6BK                   TCGA-FX-A2QS 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-FX-A3NJ                   TCGA-FX-A3RE 
"AMP PEAK 12(17P12) WILD-TYPE"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-FX-A48G                   TCGA-HB-A2OT 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-HB-A3YV                   TCGA-HB-A43Z 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-HB-A5W3                   TCGA-IE-A4EH 
  "AMP PEAK 12(17P12) MUTATED"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-IE-A4EI                   TCGA-IE-A4EJ 
"AMP PEAK 12(17P12) WILD-TYPE"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-IE-A4EK                   TCGA-IF-A4AJ 
"AMP PEAK 12(17P12) WILD-TYPE"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-IF-A4AK                   TCGA-IS-A3K6 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-IS-A3K7                   TCGA-IS-A3K8 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-IS-A3KA                   TCGA-IW-A3M4 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-IW-A3M6 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-JV-A5VE                   TCGA-JV-A5VF 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-KF-A41W                   TCGA-LI-A67I 
  "AMP PEAK 12(17P12) MUTATED"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-MO-A47R                   TCGA-PC-A5DK 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A1KU                   TCGA-DX-A1KW 
"AMP PEAK 12(17P12) WILD-TYPE"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-DX-A1KX                   TCGA-DX-A1KY 
"AMP PEAK 12(17P12) WILD-TYPE"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-DX-A1KZ                   TCGA-DX-A1L0 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A1L1                   TCGA-DX-A1L2 
  "AMP PEAK 12(17P12) MUTATED"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-DX-A1L3                   TCGA-DX-A1L4 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A23R                   TCGA-DX-A23T 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A23U                   TCGA-DX-A23V 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A23Y                   TCGA-DX-A23Z 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A240                   TCGA-DX-A2IZ 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A2J0                   TCGA-DX-A2J1 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A2J4                   TCGA-DX-A3LS 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A3LT                   TCGA-DX-A3LU 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A3LW                   TCGA-DX-A3LY 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A3M1                   TCGA-DX-A3U5 
"AMP PEAK 12(17P12) WILD-TYPE"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-DX-A3U6                   TCGA-DX-A3U7 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A3U8                   TCGA-DX-A3U9 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A3UA                   TCGA-DX-A3UB 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A3UC                   TCGA-DX-A3UD 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A3UE                   TCGA-DX-A3UF 
  "AMP PEAK 12(17P12) MUTATED"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-DX-A48J                   TCGA-DX-A48K 
"AMP PEAK 12(17P12) WILD-TYPE"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-DX-A48L                   TCGA-DX-A48N 
  "AMP PEAK 12(17P12) MUTATED"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-DX-A48O                   TCGA-DX-A48P 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A48R                   TCGA-DX-A48U 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A48V                   TCGA-DX-A6B9 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A6BA                   TCGA-DX-A6BB 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A6BE                   TCGA-DX-A6BF 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A6BG                   TCGA-DX-A6BH 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-DX-A6BK                   TCGA-FX-A2QS 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-FX-A3NJ                   TCGA-FX-A3RE 
"AMP PEAK 12(17P12) WILD-TYPE"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-FX-A48G                   TCGA-HB-A2OT 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-HB-A3YV                   TCGA-HB-A43Z 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-HB-A5W3                   TCGA-IE-A4EH 
  "AMP PEAK 12(17P12) MUTATED"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-IE-A4EI                   TCGA-IE-A4EJ 
"AMP PEAK 12(17P12) WILD-TYPE"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-IE-A4EK                   TCGA-IF-A4AJ 
"AMP PEAK 12(17P12) WILD-TYPE"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-IF-A4AK                   TCGA-IS-A3K6 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-IS-A3K7                   TCGA-IS-A3K8 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-IS-A3KA                   TCGA-IW-A3M4 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-IW-A3M6 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-JV-A5VE                   TCGA-JV-A5VF 
"AMP PEAK 12(17P12) WILD-TYPE" "AMP PEAK 12(17P12) WILD-TYPE" 
                  TCGA-KF-A41W                   TCGA-LI-A67I 
  "AMP PEAK 12(17P12) MUTATED"   "AMP PEAK 12(17P12) MUTATED" 
                  TCGA-MO-A47R                   TCGA-PC-A5DK 
  "AMP PEAK 12(17P12) MUTATED" "AMP PEAK 12(17P12) WILD-TYPE" 
[1] "hr=" "1.3"
D12V2, continuous
D12V3, binary
                              cls
clus                            0  1
  AMP PEAK 12(17P12) MUTATED   16 11
  AMP PEAK 12(17P12) WILD-TYPE 24 31
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 12(17P12) MUTATED     16   11
  AMP PEAK 12(17P12) WILD-TYPE   24   31
        clus
vv       AMP PEAK 12(17P12) MUTATED AMP PEAK 12(17P12) WILD-TYPE
  FEMALE                         16                           24
  MALE                           11                           31

Clustering(13) Variable = AMP PEAK 13(19P13.2) MUTATION ANALYSIS
D13V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 13(19P13.2) MUTATED   21  8
  AMP PEAK 13(19P13.2) WILD-TYPE 37 16
  AMP PEAK 13(19P13.2) MUTATED AMP PEAK 13(19P13.2) WILD-TYPE 
                            29                             53 
  AMP PEAK 13(19P13.2) MUTATED AMP PEAK 13(19P13.2) WILD-TYPE 
                             8                             16 
$`AMP PEAK 13(19P13.2) MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L1 
       14.04         2.04        27.19        12.85        18.51        46.68 
TCGA-DX-A1L2 TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A2J0 TCGA-DX-A2J4 TCGA-DX-A3LW 
       42.44        74.66         6.28         9.70        43.04       108.10 
TCGA-DX-A3U5 TCGA-DX-A3U7 TCGA-DX-A3U9 TCGA-DX-A3UD TCGA-DX-A3UF TCGA-DX-A48N 
       15.02        42.77        14.99        28.80        64.14        12.26 
TCGA-DX-A6B9 TCGA-DX-A6BA TCGA-DX-A6BE TCGA-FX-A2QS TCGA-FX-A3RE TCGA-FX-A48G 
       11.47        54.87        16.27         0.46         0.07         0.07 
TCGA-HB-A3YV TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IW-A3M5 
        4.54         8.94         3.22         1.38         5.88 

$`AMP PEAK 13(19P13.2) WILD-TYPE`
TCGA-DX-A1KZ TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V 
       24.49        31.56        29.85         5.23        76.37        66.87 
TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J1 TCGA-DX-A3LS TCGA-DX-A3LT 
       27.78        60.30         8.55        53.26         9.01        23.08 
TCGA-DX-A3LU TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-DX-A3UA 
       70.49        17.10        20.02        17.75         4.50        10.68 
TCGA-DX-A3UB TCGA-DX-A3UC TCGA-DX-A3UE TCGA-DX-A48J TCGA-DX-A48K TCGA-DX-A48L 
       44.45        39.35        34.88         9.73        19.30        24.26 
TCGA-DX-A48O TCGA-DX-A48P TCGA-DX-A48R TCGA-DX-A48U TCGA-DX-A48V TCGA-DX-A6BB 
       27.22        14.96        26.47        72.72        25.08        10.78 
TCGA-DX-A6BF TCGA-DX-A6BG TCGA-DX-A6BH TCGA-DX-A6BK TCGA-FX-A3NJ TCGA-HB-A2OT 
        2.07         7.33         1.68        16.18         0.10        26.89 
TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 
        4.14        12.62        21.37        25.22        31.76        28.21 
TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VE 
      143.41       116.88        13.58        73.28        22.62         6.25 
TCGA-JV-A5VF TCGA-KF-A41W TCGA-LI-A67I TCGA-MO-A47R TCGA-PC-A5DK 
        1.05        11.70         5.23         0.10        75.48 

  AMP PEAK 13(19P13.2) MUTATED AMP PEAK 13(19P13.2) WILD-TYPE 
                          0.07                           0.10 
  AMP PEAK 13(19P13.2) MUTATED AMP PEAK 13(19P13.2) WILD-TYPE 
                        108.10                         143.41 
  AMP PEAK 13(19P13.2) MUTATED AMP PEAK 13(19P13.2) WILD-TYPE 
                         14.04                          22.62 
[1] "0.1 - 108.1 (14.0)" "0.1 - 143.4 (22.6)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "AMP PEAK 13(19P13.2) MUTATED"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "AMP PEAK 13(19P13.2) MUTATED"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "AMP PEAK 13(19P13.2) MUTATED"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "AMP PEAK 13(19P13.2) MUTATED"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "AMP PEAK 13(19P13.2) MUTATED"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "AMP PEAK 13(19P13.2) MUTATED"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "AMP PEAK 13(19P13.2) MUTATED"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "AMP PEAK 13(19P13.2) MUTATED"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "AMP PEAK 13(19P13.2) MUTATED"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "AMP PEAK 13(19P13.2) MUTATED"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "AMP PEAK 13(19P13.2) MUTATED"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"AMP PEAK 13(19P13.2) WILD-TYPE"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "AMP PEAK 13(19P13.2) MUTATED"   "AMP PEAK 13(19P13.2) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "AMP PEAK 13(19P13.2) MUTATED" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"AMP PEAK 13(19P13.2) WILD-TYPE" "AMP PEAK 13(19P13.2) WILD-TYPE" 
[1] "hr=" "1.1"
D13V2, continuous
D13V3, binary
                                cls
clus                              0  1
  AMP PEAK 13(19P13.2) MUTATED   11 18
  AMP PEAK 13(19P13.2) WILD-TYPE 29 24
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 13(19P13.2) MUTATED     11   18
  AMP PEAK 13(19P13.2) WILD-TYPE   29   24
        clus
vv       AMP PEAK 13(19P13.2) MUTATED AMP PEAK 13(19P13.2) WILD-TYPE
  FEMALE                           11                             29
  MALE                             18                             24

Clustering(14) Variable = AMP PEAK 14(19Q12) MUTATION ANALYSIS
D14V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 14(19Q12) MUTATED   19  9
  AMP PEAK 14(19Q12) WILD-TYPE 39 15
  AMP PEAK 14(19Q12) MUTATED AMP PEAK 14(19Q12) WILD-TYPE 
                          28                           54 
  AMP PEAK 14(19Q12) MUTATED AMP PEAK 14(19Q12) WILD-TYPE 
                           9                           15 
$`AMP PEAK 14(19Q12) MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L1 TCGA-DX-A1L2 
       14.04         2.04        27.19        12.85        46.68        42.44 
TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A3LT TCGA-DX-A3U7 TCGA-DX-A3U9 TCGA-DX-A3UC 
       74.66         6.28        23.08        42.77        14.99        39.35 
TCGA-DX-A3UF TCGA-DX-A48K TCGA-DX-A48N TCGA-DX-A48R TCGA-DX-A6B9 TCGA-FX-A2QS 
       64.14        19.30        12.26        26.47        11.47         0.46 
TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IS-A3KA 
        4.54        12.62         8.94         3.22         1.38        13.58 
TCGA-IW-A3M5 TCGA-JV-A5VF TCGA-KF-A41W TCGA-LI-A67I 
        5.88         1.05        11.70         5.23 

$`AMP PEAK 14(19Q12) WILD-TYPE`
TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U 
       24.49        18.51        31.56        29.85         5.23        76.37 
TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 
       66.87        27.78        60.30         8.55         9.70        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 
       43.04         9.01        70.49       108.10        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-DX-A3UA TCGA-DX-A3UB TCGA-DX-A3UD 
       15.02        17.75         4.50        10.68        44.45        28.80 
TCGA-DX-A3UE TCGA-DX-A48J TCGA-DX-A48L TCGA-DX-A48O TCGA-DX-A48P TCGA-DX-A48U 
       34.88         9.73        24.26        27.22        14.96        72.72 
TCGA-DX-A48V TCGA-DX-A6BA TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BF TCGA-DX-A6BG 
       25.08        54.87        10.78        16.27         2.07         7.33 
TCGA-DX-A6BH TCGA-DX-A6BK TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT 
        1.68        16.18         0.10         0.07         0.07        26.89 
TCGA-HB-A43Z TCGA-IE-A4EH TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 
        4.14        21.37        25.22        31.76        28.21       143.41 
TCGA-IS-A3K8 TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-MO-A47R TCGA-PC-A5DK 
      116.88        73.28        22.62         6.25         0.10        75.48 

  AMP PEAK 14(19Q12) MUTATED AMP PEAK 14(19Q12) WILD-TYPE 
                        0.46                         0.07 
  AMP PEAK 14(19Q12) MUTATED AMP PEAK 14(19Q12) WILD-TYPE 
                       74.66                       143.41 
  AMP PEAK 14(19Q12) MUTATED AMP PEAK 14(19Q12) WILD-TYPE 
                      12.735                       23.440 
[1] "0.5 - 74.7 (12.7)"  "0.1 - 143.4 (23.4)"
                  TCGA-DX-A1KU                   TCGA-DX-A1KW 
  "AMP PEAK 14(19Q12) MUTATED"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-DX-A1KX                   TCGA-DX-A1KY 
  "AMP PEAK 14(19Q12) MUTATED"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-DX-A1KZ                   TCGA-DX-A1L0 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A1L1                   TCGA-DX-A1L2 
  "AMP PEAK 14(19Q12) MUTATED"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-DX-A1L3                   TCGA-DX-A1L4 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A23R                   TCGA-DX-A23T 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A23U                   TCGA-DX-A23V 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A23Y                   TCGA-DX-A23Z 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A240                   TCGA-DX-A2IZ 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A2J0                   TCGA-DX-A2J1 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A2J4                   TCGA-DX-A3LS 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A3LT                   TCGA-DX-A3LU 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A3LW                   TCGA-DX-A3LY 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A3M1                   TCGA-DX-A3U5 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A3U6                   TCGA-DX-A3U7 
"AMP PEAK 14(19Q12) WILD-TYPE"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-DX-A3U8                   TCGA-DX-A3U9 
"AMP PEAK 14(19Q12) WILD-TYPE"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-DX-A3UA                   TCGA-DX-A3UB 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A3UC                   TCGA-DX-A3UD 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A3UE                   TCGA-DX-A3UF 
"AMP PEAK 14(19Q12) WILD-TYPE"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-DX-A48J                   TCGA-DX-A48K 
"AMP PEAK 14(19Q12) WILD-TYPE"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-DX-A48L                   TCGA-DX-A48N 
"AMP PEAK 14(19Q12) WILD-TYPE"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-DX-A48O                   TCGA-DX-A48P 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A48R                   TCGA-DX-A48U 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A48V                   TCGA-DX-A6B9 
"AMP PEAK 14(19Q12) WILD-TYPE"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-DX-A6BA                   TCGA-DX-A6BB 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A6BE                   TCGA-DX-A6BF 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A6BG                   TCGA-DX-A6BH 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A6BK                   TCGA-FX-A2QS 
"AMP PEAK 14(19Q12) WILD-TYPE"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-FX-A3NJ                   TCGA-FX-A3RE 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-FX-A48G                   TCGA-HB-A2OT 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-HB-A3YV                   TCGA-HB-A43Z 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-HB-A5W3                   TCGA-IE-A4EH 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-IE-A4EI                   TCGA-IE-A4EJ 
  "AMP PEAK 14(19Q12) MUTATED"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-IE-A4EK                   TCGA-IF-A4AJ 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-IF-A4AK                   TCGA-IS-A3K6 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-IS-A3K7                   TCGA-IS-A3K8 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-IS-A3KA                   TCGA-IW-A3M4 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-IW-A3M6 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-JV-A5VE                   TCGA-JV-A5VF 
"AMP PEAK 14(19Q12) WILD-TYPE"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-KF-A41W                   TCGA-LI-A67I 
  "AMP PEAK 14(19Q12) MUTATED"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-MO-A47R                   TCGA-PC-A5DK 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A1KU                   TCGA-DX-A1KW 
  "AMP PEAK 14(19Q12) MUTATED"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-DX-A1KX                   TCGA-DX-A1KY 
  "AMP PEAK 14(19Q12) MUTATED"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-DX-A1KZ                   TCGA-DX-A1L0 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A1L1                   TCGA-DX-A1L2 
  "AMP PEAK 14(19Q12) MUTATED"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-DX-A1L3                   TCGA-DX-A1L4 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A23R                   TCGA-DX-A23T 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A23U                   TCGA-DX-A23V 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A23Y                   TCGA-DX-A23Z 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A240                   TCGA-DX-A2IZ 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A2J0                   TCGA-DX-A2J1 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A2J4                   TCGA-DX-A3LS 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A3LT                   TCGA-DX-A3LU 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A3LW                   TCGA-DX-A3LY 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A3M1                   TCGA-DX-A3U5 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A3U6                   TCGA-DX-A3U7 
"AMP PEAK 14(19Q12) WILD-TYPE"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-DX-A3U8                   TCGA-DX-A3U9 
"AMP PEAK 14(19Q12) WILD-TYPE"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-DX-A3UA                   TCGA-DX-A3UB 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A3UC                   TCGA-DX-A3UD 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A3UE                   TCGA-DX-A3UF 
"AMP PEAK 14(19Q12) WILD-TYPE"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-DX-A48J                   TCGA-DX-A48K 
"AMP PEAK 14(19Q12) WILD-TYPE"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-DX-A48L                   TCGA-DX-A48N 
"AMP PEAK 14(19Q12) WILD-TYPE"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-DX-A48O                   TCGA-DX-A48P 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A48R                   TCGA-DX-A48U 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A48V                   TCGA-DX-A6B9 
"AMP PEAK 14(19Q12) WILD-TYPE"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-DX-A6BA                   TCGA-DX-A6BB 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A6BE                   TCGA-DX-A6BF 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A6BG                   TCGA-DX-A6BH 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A6BK                   TCGA-FX-A2QS 
"AMP PEAK 14(19Q12) WILD-TYPE"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-FX-A3NJ                   TCGA-FX-A3RE 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-FX-A48G                   TCGA-HB-A2OT 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-HB-A3YV                   TCGA-HB-A43Z 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-HB-A5W3                   TCGA-IE-A4EH 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-IE-A4EI                   TCGA-IE-A4EJ 
  "AMP PEAK 14(19Q12) MUTATED"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-IE-A4EK                   TCGA-IF-A4AJ 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-IF-A4AK                   TCGA-IS-A3K6 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-IS-A3K7                   TCGA-IS-A3K8 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-IS-A3KA                   TCGA-IW-A3M4 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-IW-A3M6 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-JV-A5VE                   TCGA-JV-A5VF 
"AMP PEAK 14(19Q12) WILD-TYPE"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-KF-A41W                   TCGA-LI-A67I 
  "AMP PEAK 14(19Q12) MUTATED"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-MO-A47R                   TCGA-PC-A5DK 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A1KU                   TCGA-DX-A1KW 
  "AMP PEAK 14(19Q12) MUTATED"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-DX-A1KX                   TCGA-DX-A1KY 
  "AMP PEAK 14(19Q12) MUTATED"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-DX-A1KZ                   TCGA-DX-A1L0 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A1L1                   TCGA-DX-A1L2 
  "AMP PEAK 14(19Q12) MUTATED"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-DX-A1L3                   TCGA-DX-A1L4 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A23R                   TCGA-DX-A23T 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A23U                   TCGA-DX-A23V 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A23Y                   TCGA-DX-A23Z 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A240                   TCGA-DX-A2IZ 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A2J0                   TCGA-DX-A2J1 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A2J4                   TCGA-DX-A3LS 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A3LT                   TCGA-DX-A3LU 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A3LW                   TCGA-DX-A3LY 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A3M1                   TCGA-DX-A3U5 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A3U6                   TCGA-DX-A3U7 
"AMP PEAK 14(19Q12) WILD-TYPE"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-DX-A3U8                   TCGA-DX-A3U9 
"AMP PEAK 14(19Q12) WILD-TYPE"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-DX-A3UA                   TCGA-DX-A3UB 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A3UC                   TCGA-DX-A3UD 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A3UE                   TCGA-DX-A3UF 
"AMP PEAK 14(19Q12) WILD-TYPE"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-DX-A48J                   TCGA-DX-A48K 
"AMP PEAK 14(19Q12) WILD-TYPE"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-DX-A48L                   TCGA-DX-A48N 
"AMP PEAK 14(19Q12) WILD-TYPE"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-DX-A48O                   TCGA-DX-A48P 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A48R                   TCGA-DX-A48U 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A48V                   TCGA-DX-A6B9 
"AMP PEAK 14(19Q12) WILD-TYPE"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-DX-A6BA                   TCGA-DX-A6BB 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A6BE                   TCGA-DX-A6BF 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A6BG                   TCGA-DX-A6BH 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-DX-A6BK                   TCGA-FX-A2QS 
"AMP PEAK 14(19Q12) WILD-TYPE"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-FX-A3NJ                   TCGA-FX-A3RE 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-FX-A48G                   TCGA-HB-A2OT 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-HB-A3YV                   TCGA-HB-A43Z 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-HB-A5W3                   TCGA-IE-A4EH 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-IE-A4EI                   TCGA-IE-A4EJ 
  "AMP PEAK 14(19Q12) MUTATED"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-IE-A4EK                   TCGA-IF-A4AJ 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-IF-A4AK                   TCGA-IS-A3K6 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-IS-A3K7                   TCGA-IS-A3K8 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-IS-A3KA                   TCGA-IW-A3M4 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-IW-A3M6 
  "AMP PEAK 14(19Q12) MUTATED" "AMP PEAK 14(19Q12) WILD-TYPE" 
                  TCGA-JV-A5VE                   TCGA-JV-A5VF 
"AMP PEAK 14(19Q12) WILD-TYPE"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-KF-A41W                   TCGA-LI-A67I 
  "AMP PEAK 14(19Q12) MUTATED"   "AMP PEAK 14(19Q12) MUTATED" 
                  TCGA-MO-A47R                   TCGA-PC-A5DK 
"AMP PEAK 14(19Q12) WILD-TYPE" "AMP PEAK 14(19Q12) WILD-TYPE" 
[1] "hr=" "1.7"
D14V2, continuous
D14V3, binary
                              cls
clus                            0  1
  AMP PEAK 14(19Q12) MUTATED   14 14
  AMP PEAK 14(19Q12) WILD-TYPE 26 28
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 14(19Q12) MUTATED     14   14
  AMP PEAK 14(19Q12) WILD-TYPE   26   28
        clus
vv       AMP PEAK 14(19Q12) MUTATED AMP PEAK 14(19Q12) WILD-TYPE
  FEMALE                         14                           26
  MALE                           14                           28

Clustering(15) Variable = AMP PEAK 15(20Q12) MUTATION ANALYSIS
D15V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 15(20Q12) MUTATED   21 11
  AMP PEAK 15(20Q12) WILD-TYPE 37 13
  AMP PEAK 15(20Q12) MUTATED AMP PEAK 15(20Q12) WILD-TYPE 
                          32                           50 
  AMP PEAK 15(20Q12) MUTATED AMP PEAK 15(20Q12) WILD-TYPE 
                          11                           13 
$`AMP PEAK 15(20Q12) MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L1 
       14.04         2.04        27.19        12.85        18.51        46.68 
TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A3LS TCGA-DX-A3LW TCGA-DX-A3M1 
       29.85        74.66         6.28         9.01       108.10        20.02 
TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U9 TCGA-DX-A3UA TCGA-DX-A48P TCGA-DX-A6BB 
       17.75        42.77        14.99        10.68        14.96        10.78 
TCGA-DX-A6BG TCGA-FX-A3NJ TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EI 
        7.33         0.10         0.07         4.54        12.62         8.94 
TCGA-IE-A4EJ TCGA-IF-A4AK TCGA-IS-A3K7 TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-JV-A5VE 
        3.22        31.76       143.41        13.58         5.88         6.25 
TCGA-KF-A41W TCGA-LI-A67I 
       11.70         5.23 

$`AMP PEAK 15(20Q12) WILD-TYPE`
TCGA-DX-A1KZ TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V 
       24.49        42.44        31.56         5.23        76.37        66.87 
TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 
       27.78        60.30         8.55         9.70        53.26        43.04 
TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LY TCGA-DX-A3U5 TCGA-DX-A3U8 TCGA-DX-A3UB 
       23.08        70.49        17.10        15.02         4.50        44.45 
TCGA-DX-A3UC TCGA-DX-A3UD TCGA-DX-A3UE TCGA-DX-A3UF TCGA-DX-A48J TCGA-DX-A48K 
       39.35        28.80        34.88        64.14         9.73        19.30 
TCGA-DX-A48L TCGA-DX-A48N TCGA-DX-A48O TCGA-DX-A48R TCGA-DX-A48U TCGA-DX-A48V 
       24.26        12.26        27.22        26.47        72.72        25.08 
TCGA-DX-A6B9 TCGA-DX-A6BA TCGA-DX-A6BE TCGA-DX-A6BF TCGA-DX-A6BH TCGA-DX-A6BK 
       11.47        54.87        16.27         2.07         1.68        16.18 
TCGA-FX-A2QS TCGA-FX-A3RE TCGA-HB-A2OT TCGA-HB-A43Z TCGA-IE-A4EH TCGA-IE-A4EK 
        0.46         0.07        26.89         4.14        21.37         1.38 
TCGA-IF-A4AJ TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VF 
       25.22        28.21       116.88        73.28        22.62         1.05 
TCGA-MO-A47R TCGA-PC-A5DK 
        0.10        75.48 

  AMP PEAK 15(20Q12) MUTATED AMP PEAK 15(20Q12) WILD-TYPE 
                        0.07                         0.07 
  AMP PEAK 15(20Q12) MUTATED AMP PEAK 15(20Q12) WILD-TYPE 
                      143.41                       116.88 
  AMP PEAK 15(20Q12) MUTATED AMP PEAK 15(20Q12) WILD-TYPE 
                      12.735                       24.785 
[1] "0.1 - 143.4 (12.7)" "0.1 - 116.9 (24.8)"
                  TCGA-DX-A1KU                   TCGA-DX-A1KW 
  "AMP PEAK 15(20Q12) MUTATED"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-DX-A1KX                   TCGA-DX-A1KY 
  "AMP PEAK 15(20Q12) MUTATED"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-DX-A1KZ                   TCGA-DX-A1L0 
"AMP PEAK 15(20Q12) WILD-TYPE"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-DX-A1L1                   TCGA-DX-A1L2 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A1L3                   TCGA-DX-A1L4 
"AMP PEAK 15(20Q12) WILD-TYPE"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-DX-A23R                   TCGA-DX-A23T 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A23U                   TCGA-DX-A23V 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A23Y                   TCGA-DX-A23Z 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A240                   TCGA-DX-A2IZ 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A2J0                   TCGA-DX-A2J1 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A2J4                   TCGA-DX-A3LS 
"AMP PEAK 15(20Q12) WILD-TYPE"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-DX-A3LT                   TCGA-DX-A3LU 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A3LW                   TCGA-DX-A3LY 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A3M1                   TCGA-DX-A3U5 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A3U6                   TCGA-DX-A3U7 
  "AMP PEAK 15(20Q12) MUTATED"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-DX-A3U8                   TCGA-DX-A3U9 
"AMP PEAK 15(20Q12) WILD-TYPE"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-DX-A3UA                   TCGA-DX-A3UB 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A3UC                   TCGA-DX-A3UD 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A3UE                   TCGA-DX-A3UF 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A48J                   TCGA-DX-A48K 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A48L                   TCGA-DX-A48N 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A48O                   TCGA-DX-A48P 
"AMP PEAK 15(20Q12) WILD-TYPE"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-DX-A48R                   TCGA-DX-A48U 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A48V                   TCGA-DX-A6B9 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A6BA                   TCGA-DX-A6BB 
"AMP PEAK 15(20Q12) WILD-TYPE"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-DX-A6BE                   TCGA-DX-A6BF 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A6BG                   TCGA-DX-A6BH 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A6BK                   TCGA-FX-A2QS 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-FX-A3NJ                   TCGA-FX-A3RE 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-FX-A48G                   TCGA-HB-A2OT 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-HB-A3YV                   TCGA-HB-A43Z 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-HB-A5W3                   TCGA-IE-A4EH 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-IE-A4EI                   TCGA-IE-A4EJ 
  "AMP PEAK 15(20Q12) MUTATED"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-IE-A4EK                   TCGA-IF-A4AJ 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-IF-A4AK                   TCGA-IS-A3K6 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-IS-A3K7                   TCGA-IS-A3K8 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-IS-A3KA                   TCGA-IW-A3M4 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-IW-A3M6 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-JV-A5VE                   TCGA-JV-A5VF 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-KF-A41W                   TCGA-LI-A67I 
  "AMP PEAK 15(20Q12) MUTATED"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-MO-A47R                   TCGA-PC-A5DK 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A1KU                   TCGA-DX-A1KW 
  "AMP PEAK 15(20Q12) MUTATED"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-DX-A1KX                   TCGA-DX-A1KY 
  "AMP PEAK 15(20Q12) MUTATED"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-DX-A1KZ                   TCGA-DX-A1L0 
"AMP PEAK 15(20Q12) WILD-TYPE"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-DX-A1L1                   TCGA-DX-A1L2 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A1L3                   TCGA-DX-A1L4 
"AMP PEAK 15(20Q12) WILD-TYPE"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-DX-A23R                   TCGA-DX-A23T 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A23U                   TCGA-DX-A23V 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A23Y                   TCGA-DX-A23Z 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A240                   TCGA-DX-A2IZ 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A2J0                   TCGA-DX-A2J1 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A2J4                   TCGA-DX-A3LS 
"AMP PEAK 15(20Q12) WILD-TYPE"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-DX-A3LT                   TCGA-DX-A3LU 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A3LW                   TCGA-DX-A3LY 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A3M1                   TCGA-DX-A3U5 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A3U6                   TCGA-DX-A3U7 
  "AMP PEAK 15(20Q12) MUTATED"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-DX-A3U8                   TCGA-DX-A3U9 
"AMP PEAK 15(20Q12) WILD-TYPE"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-DX-A3UA                   TCGA-DX-A3UB 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A3UC                   TCGA-DX-A3UD 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A3UE                   TCGA-DX-A3UF 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A48J                   TCGA-DX-A48K 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A48L                   TCGA-DX-A48N 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A48O                   TCGA-DX-A48P 
"AMP PEAK 15(20Q12) WILD-TYPE"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-DX-A48R                   TCGA-DX-A48U 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A48V                   TCGA-DX-A6B9 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A6BA                   TCGA-DX-A6BB 
"AMP PEAK 15(20Q12) WILD-TYPE"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-DX-A6BE                   TCGA-DX-A6BF 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A6BG                   TCGA-DX-A6BH 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A6BK                   TCGA-FX-A2QS 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-FX-A3NJ                   TCGA-FX-A3RE 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-FX-A48G                   TCGA-HB-A2OT 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-HB-A3YV                   TCGA-HB-A43Z 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-HB-A5W3                   TCGA-IE-A4EH 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-IE-A4EI                   TCGA-IE-A4EJ 
  "AMP PEAK 15(20Q12) MUTATED"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-IE-A4EK                   TCGA-IF-A4AJ 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-IF-A4AK                   TCGA-IS-A3K6 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-IS-A3K7                   TCGA-IS-A3K8 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-IS-A3KA                   TCGA-IW-A3M4 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-IW-A3M6 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-JV-A5VE                   TCGA-JV-A5VF 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-KF-A41W                   TCGA-LI-A67I 
  "AMP PEAK 15(20Q12) MUTATED"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-MO-A47R                   TCGA-PC-A5DK 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A1KU                   TCGA-DX-A1KW 
  "AMP PEAK 15(20Q12) MUTATED"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-DX-A1KX                   TCGA-DX-A1KY 
  "AMP PEAK 15(20Q12) MUTATED"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-DX-A1KZ                   TCGA-DX-A1L0 
"AMP PEAK 15(20Q12) WILD-TYPE"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-DX-A1L1                   TCGA-DX-A1L2 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A1L3                   TCGA-DX-A1L4 
"AMP PEAK 15(20Q12) WILD-TYPE"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-DX-A23R                   TCGA-DX-A23T 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A23U                   TCGA-DX-A23V 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A23Y                   TCGA-DX-A23Z 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A240                   TCGA-DX-A2IZ 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A2J0                   TCGA-DX-A2J1 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A2J4                   TCGA-DX-A3LS 
"AMP PEAK 15(20Q12) WILD-TYPE"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-DX-A3LT                   TCGA-DX-A3LU 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A3LW                   TCGA-DX-A3LY 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A3M1                   TCGA-DX-A3U5 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A3U6                   TCGA-DX-A3U7 
  "AMP PEAK 15(20Q12) MUTATED"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-DX-A3U8                   TCGA-DX-A3U9 
"AMP PEAK 15(20Q12) WILD-TYPE"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-DX-A3UA                   TCGA-DX-A3UB 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A3UC                   TCGA-DX-A3UD 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A3UE                   TCGA-DX-A3UF 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A48J                   TCGA-DX-A48K 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A48L                   TCGA-DX-A48N 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A48O                   TCGA-DX-A48P 
"AMP PEAK 15(20Q12) WILD-TYPE"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-DX-A48R                   TCGA-DX-A48U 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A48V                   TCGA-DX-A6B9 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A6BA                   TCGA-DX-A6BB 
"AMP PEAK 15(20Q12) WILD-TYPE"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-DX-A6BE                   TCGA-DX-A6BF 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A6BG                   TCGA-DX-A6BH 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-DX-A6BK                   TCGA-FX-A2QS 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-FX-A3NJ                   TCGA-FX-A3RE 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-FX-A48G                   TCGA-HB-A2OT 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-HB-A3YV                   TCGA-HB-A43Z 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-HB-A5W3                   TCGA-IE-A4EH 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-IE-A4EI                   TCGA-IE-A4EJ 
  "AMP PEAK 15(20Q12) MUTATED"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-IE-A4EK                   TCGA-IF-A4AJ 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-IF-A4AK                   TCGA-IS-A3K6 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-IS-A3K7                   TCGA-IS-A3K8 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-IS-A3KA                   TCGA-IW-A3M4 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-IW-A3M6 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-JV-A5VE                   TCGA-JV-A5VF 
  "AMP PEAK 15(20Q12) MUTATED" "AMP PEAK 15(20Q12) WILD-TYPE" 
                  TCGA-KF-A41W                   TCGA-LI-A67I 
  "AMP PEAK 15(20Q12) MUTATED"   "AMP PEAK 15(20Q12) MUTATED" 
                  TCGA-MO-A47R                   TCGA-PC-A5DK 
"AMP PEAK 15(20Q12) WILD-TYPE" "AMP PEAK 15(20Q12) WILD-TYPE" 
[1] "hr=" "1.8"
D15V2, continuous
D15V3, binary
                              cls
clus                            0  1
  AMP PEAK 15(20Q12) MUTATED   17 15
  AMP PEAK 15(20Q12) WILD-TYPE 23 27
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 15(20Q12) MUTATED     17   15
  AMP PEAK 15(20Q12) WILD-TYPE   23   27
        clus
vv       AMP PEAK 15(20Q12) MUTATED AMP PEAK 15(20Q12) WILD-TYPE
  FEMALE                         17                           23
  MALE                           15                           27

Clustering(16) Variable = AMP PEAK 16(XP21.1) MUTATION ANALYSIS
D16V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 16(XP21.1) MUTATED   14  8
  AMP PEAK 16(XP21.1) WILD-TYPE 44 16
  AMP PEAK 16(XP21.1) MUTATED AMP PEAK 16(XP21.1) WILD-TYPE 
                           22                            60 
  AMP PEAK 16(XP21.1) MUTATED AMP PEAK 16(XP21.1) WILD-TYPE 
                            8                            16 
$`AMP PEAK 16(XP21.1) MUTATED`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A23R TCGA-DX-A240 
       27.19        12.85        24.49        18.51        74.66        60.30 
TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3UA TCGA-DX-A3UC TCGA-DX-A3UE 
      108.10        17.10        20.02        10.68        39.35        34.88 
TCGA-DX-A3UF TCGA-DX-A48L TCGA-DX-A6BA TCGA-DX-A6BB TCGA-HB-A2OT TCGA-HB-A3YV 
       64.14        24.26        54.87        10.78        26.89         4.54 
TCGA-IE-A4EI TCGA-IS-A3K6 TCGA-IS-A3KA TCGA-IW-A3M6 
        8.94        28.21        13.58        22.62 

$`AMP PEAK 16(XP21.1) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 
       14.04         2.04        46.68        42.44        31.56        29.85 
TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A2IZ 
        5.23        76.37        66.87         6.28        27.78         8.55 
TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU 
        9.70        53.26        43.04         9.01        23.08        70.49 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-DX-A3U9 TCGA-DX-A3UB 
       15.02        17.75        42.77         4.50        14.99        44.45 
TCGA-DX-A3UD TCGA-DX-A48J TCGA-DX-A48K TCGA-DX-A48N TCGA-DX-A48O TCGA-DX-A48P 
       28.80         9.73        19.30        12.26        27.22        14.96 
TCGA-DX-A48R TCGA-DX-A48U TCGA-DX-A48V TCGA-DX-A6B9 TCGA-DX-A6BE TCGA-DX-A6BF 
       26.47        72.72        25.08        11.47        16.27         2.07 
TCGA-DX-A6BG TCGA-DX-A6BH TCGA-DX-A6BK TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE 
        7.33         1.68        16.18         0.46         0.10         0.07 
TCGA-FX-A48G TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EJ TCGA-IE-A4EK 
        0.07         4.14        12.62        21.37         3.22         1.38 
TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IW-A3M4 TCGA-IW-A3M5 
       25.22        31.76       143.41       116.88        73.28         5.88 
TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W TCGA-LI-A67I TCGA-MO-A47R TCGA-PC-A5DK 
        6.25         1.05        11.70         5.23         0.10        75.48 

  AMP PEAK 16(XP21.1) MUTATED AMP PEAK 16(XP21.1) WILD-TYPE 
                         4.54                          0.07 
  AMP PEAK 16(XP21.1) MUTATED AMP PEAK 16(XP21.1) WILD-TYPE 
                       108.10                        143.41 
  AMP PEAK 16(XP21.1) MUTATED AMP PEAK 16(XP21.1) WILD-TYPE 
                       24.375                        15.005 
[1] "4.5 - 108.1 (24.4)" "0.1 - 143.4 (15.0)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "AMP PEAK 16(XP21.1) MUTATED"   "AMP PEAK 16(XP21.1) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "AMP PEAK 16(XP21.1) MUTATED"   "AMP PEAK 16(XP21.1) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "AMP PEAK 16(XP21.1) MUTATED" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
  "AMP PEAK 16(XP21.1) MUTATED" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "AMP PEAK 16(XP21.1) MUTATED"   "AMP PEAK 16(XP21.1) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "AMP PEAK 16(XP21.1) MUTATED" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "AMP PEAK 16(XP21.1) MUTATED" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
  "AMP PEAK 16(XP21.1) MUTATED" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
  "AMP PEAK 16(XP21.1) MUTATED"   "AMP PEAK 16(XP21.1) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
  "AMP PEAK 16(XP21.1) MUTATED" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "AMP PEAK 16(XP21.1) MUTATED"   "AMP PEAK 16(XP21.1) MUTATED" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK 16(XP21.1) WILD-TYPE"   "AMP PEAK 16(XP21.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "AMP PEAK 16(XP21.1) MUTATED" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK 16(XP21.1) MUTATED" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK 16(XP21.1) WILD-TYPE"   "AMP PEAK 16(XP21.1) MUTATED" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "AMP PEAK 16(XP21.1) MUTATED" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"AMP PEAK 16(XP21.1) WILD-TYPE"   "AMP PEAK 16(XP21.1) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "AMP PEAK 16(XP21.1) MUTATED"   "AMP PEAK 16(XP21.1) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "AMP PEAK 16(XP21.1) MUTATED"   "AMP PEAK 16(XP21.1) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "AMP PEAK 16(XP21.1) MUTATED" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
  "AMP PEAK 16(XP21.1) MUTATED" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "AMP PEAK 16(XP21.1) MUTATED"   "AMP PEAK 16(XP21.1) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "AMP PEAK 16(XP21.1) MUTATED" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "AMP PEAK 16(XP21.1) MUTATED" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
  "AMP PEAK 16(XP21.1) MUTATED" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
  "AMP PEAK 16(XP21.1) MUTATED"   "AMP PEAK 16(XP21.1) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
  "AMP PEAK 16(XP21.1) MUTATED" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "AMP PEAK 16(XP21.1) MUTATED"   "AMP PEAK 16(XP21.1) MUTATED" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK 16(XP21.1) WILD-TYPE"   "AMP PEAK 16(XP21.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "AMP PEAK 16(XP21.1) MUTATED" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK 16(XP21.1) MUTATED" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK 16(XP21.1) WILD-TYPE"   "AMP PEAK 16(XP21.1) MUTATED" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "AMP PEAK 16(XP21.1) MUTATED" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"AMP PEAK 16(XP21.1) WILD-TYPE"   "AMP PEAK 16(XP21.1) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "AMP PEAK 16(XP21.1) MUTATED"   "AMP PEAK 16(XP21.1) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "AMP PEAK 16(XP21.1) MUTATED"   "AMP PEAK 16(XP21.1) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "AMP PEAK 16(XP21.1) MUTATED" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
  "AMP PEAK 16(XP21.1) MUTATED" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "AMP PEAK 16(XP21.1) MUTATED"   "AMP PEAK 16(XP21.1) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "AMP PEAK 16(XP21.1) MUTATED" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "AMP PEAK 16(XP21.1) MUTATED" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
  "AMP PEAK 16(XP21.1) MUTATED" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
  "AMP PEAK 16(XP21.1) MUTATED"   "AMP PEAK 16(XP21.1) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
  "AMP PEAK 16(XP21.1) MUTATED" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "AMP PEAK 16(XP21.1) MUTATED"   "AMP PEAK 16(XP21.1) MUTATED" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK 16(XP21.1) WILD-TYPE"   "AMP PEAK 16(XP21.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "AMP PEAK 16(XP21.1) MUTATED" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK 16(XP21.1) MUTATED" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK 16(XP21.1) WILD-TYPE"   "AMP PEAK 16(XP21.1) MUTATED" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "AMP PEAK 16(XP21.1) MUTATED" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"AMP PEAK 16(XP21.1) WILD-TYPE"   "AMP PEAK 16(XP21.1) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"AMP PEAK 16(XP21.1) WILD-TYPE" "AMP PEAK 16(XP21.1) WILD-TYPE" 
[1] "hr=" "1.1"
D16V2, continuous
D16V3, binary
                               cls
clus                             0  1
  AMP PEAK 16(XP21.1) MUTATED   13  9
  AMP PEAK 16(XP21.1) WILD-TYPE 27 33
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 16(XP21.1) MUTATED     13    9
  AMP PEAK 16(XP21.1) WILD-TYPE   27   33
        clus
vv       AMP PEAK 16(XP21.1) MUTATED AMP PEAK 16(XP21.1) WILD-TYPE
  FEMALE                          13                            27
  MALE                             9                            33

Clustering(17) Variable = AMP PEAK 17(XQ21.1) MUTATION ANALYSIS
D17V1, survival
                               sevent
clus2                            0  1
  AMP PEAK 17(XQ21.1) MUTATED    8  4
  AMP PEAK 17(XQ21.1) WILD-TYPE 50 20
  AMP PEAK 17(XQ21.1) MUTATED AMP PEAK 17(XQ21.1) WILD-TYPE 
                           12                            70 
  AMP PEAK 17(XQ21.1) MUTATED AMP PEAK 17(XQ21.1) WILD-TYPE 
                            4                            20 
$`AMP PEAK 17(XQ21.1) MUTATED`
TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A23Y TCGA-DX-A3LY 
       12.85        24.49        18.51        46.68         6.28        17.10 
TCGA-FX-A2QS TCGA-HB-A43Z TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IS-A3KA TCGA-LI-A67I 
        0.46         4.14         8.94         3.22        13.58         5.23 

$`AMP PEAK 17(XQ21.1) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 
       14.04         2.04        27.19        42.44        31.56        29.85 
TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 
       74.66         5.23        76.37        66.87        27.78        60.30 
TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT 
        8.55         9.70        53.26        43.04         9.01        23.08 
TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 
       70.49       108.10        20.02        15.02        17.75        42.77 
TCGA-DX-A3U8 TCGA-DX-A3U9 TCGA-DX-A3UA TCGA-DX-A3UB TCGA-DX-A3UC TCGA-DX-A3UD 
        4.50        14.99        10.68        44.45        39.35        28.80 
TCGA-DX-A3UE TCGA-DX-A3UF TCGA-DX-A48J TCGA-DX-A48K TCGA-DX-A48L TCGA-DX-A48N 
       34.88        64.14         9.73        19.30        24.26        12.26 
TCGA-DX-A48O TCGA-DX-A48P TCGA-DX-A48R TCGA-DX-A48U TCGA-DX-A48V TCGA-DX-A6B9 
       27.22        14.96        26.47        72.72        25.08        11.47 
TCGA-DX-A6BA TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BF TCGA-DX-A6BG TCGA-DX-A6BH 
       54.87        10.78        16.27         2.07         7.33         1.68 
TCGA-DX-A6BK TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV 
       16.18         0.10         0.07         0.07        26.89         4.54 
TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 
       12.62        21.37         1.38        25.22        31.76        28.21 
TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE 
      143.41       116.88        73.28         5.88        22.62         6.25 
TCGA-JV-A5VF TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
        1.05        11.70         0.10        75.48 

  AMP PEAK 17(XQ21.1) MUTATED AMP PEAK 17(XQ21.1) WILD-TYPE 
                         0.46                          0.07 
  AMP PEAK 17(XQ21.1) MUTATED AMP PEAK 17(XQ21.1) WILD-TYPE 
                        46.68                        143.41 
  AMP PEAK 17(XQ21.1) MUTATED AMP PEAK 17(XQ21.1) WILD-TYPE 
                       10.895                        21.995 
[1] "0.5 - 46.7 (10.9)"  "0.1 - 143.4 (22.0)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"AMP PEAK 17(XQ21.1) WILD-TYPE"   "AMP PEAK 17(XQ21.1) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "AMP PEAK 17(XQ21.1) MUTATED"   "AMP PEAK 17(XQ21.1) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "AMP PEAK 17(XQ21.1) MUTATED" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "AMP PEAK 17(XQ21.1) MUTATED" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK 17(XQ21.1) WILD-TYPE"   "AMP PEAK 17(XQ21.1) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"AMP PEAK 17(XQ21.1) WILD-TYPE"   "AMP PEAK 17(XQ21.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"AMP PEAK 17(XQ21.1) WILD-TYPE"   "AMP PEAK 17(XQ21.1) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK 17(XQ21.1) MUTATED"   "AMP PEAK 17(XQ21.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "AMP PEAK 17(XQ21.1) MUTATED" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"AMP PEAK 17(XQ21.1) WILD-TYPE"   "AMP PEAK 17(XQ21.1) MUTATED" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"AMP PEAK 17(XQ21.1) WILD-TYPE"   "AMP PEAK 17(XQ21.1) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "AMP PEAK 17(XQ21.1) MUTATED"   "AMP PEAK 17(XQ21.1) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "AMP PEAK 17(XQ21.1) MUTATED" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "AMP PEAK 17(XQ21.1) MUTATED" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK 17(XQ21.1) WILD-TYPE"   "AMP PEAK 17(XQ21.1) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"AMP PEAK 17(XQ21.1) WILD-TYPE"   "AMP PEAK 17(XQ21.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"AMP PEAK 17(XQ21.1) WILD-TYPE"   "AMP PEAK 17(XQ21.1) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK 17(XQ21.1) MUTATED"   "AMP PEAK 17(XQ21.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "AMP PEAK 17(XQ21.1) MUTATED" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"AMP PEAK 17(XQ21.1) WILD-TYPE"   "AMP PEAK 17(XQ21.1) MUTATED" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"AMP PEAK 17(XQ21.1) WILD-TYPE"   "AMP PEAK 17(XQ21.1) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "AMP PEAK 17(XQ21.1) MUTATED"   "AMP PEAK 17(XQ21.1) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "AMP PEAK 17(XQ21.1) MUTATED" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "AMP PEAK 17(XQ21.1) MUTATED" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"AMP PEAK 17(XQ21.1) WILD-TYPE"   "AMP PEAK 17(XQ21.1) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"AMP PEAK 17(XQ21.1) WILD-TYPE"   "AMP PEAK 17(XQ21.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"AMP PEAK 17(XQ21.1) WILD-TYPE"   "AMP PEAK 17(XQ21.1) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "AMP PEAK 17(XQ21.1) MUTATED"   "AMP PEAK 17(XQ21.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "AMP PEAK 17(XQ21.1) MUTATED" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"AMP PEAK 17(XQ21.1) WILD-TYPE"   "AMP PEAK 17(XQ21.1) MUTATED" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"AMP PEAK 17(XQ21.1) WILD-TYPE" "AMP PEAK 17(XQ21.1) WILD-TYPE" 
[1] "hr=" "2.2"
D17V2, continuous
D17V3, binary
                               cls
clus                             0  1
  AMP PEAK 17(XQ21.1) MUTATED    6  6
  AMP PEAK 17(XQ21.1) WILD-TYPE 34 36
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 17(XQ21.1) MUTATED      6    6
  AMP PEAK 17(XQ21.1) WILD-TYPE   34   36
        clus
vv       AMP PEAK 17(XQ21.1) MUTATED AMP PEAK 17(XQ21.1) WILD-TYPE
  FEMALE                           6                            34
  MALE                             6                            36

Clustering(18) Variable = DEL PEAK  1(1P36.32) MUTATION ANALYSIS
D18V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  1(1P36.32) MUTATED   25  5
  DEL PEAK  1(1P36.32) WILD-TYPE 33 19
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                            30                             52 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                             5                             19 
$`DEL PEAK  1(1P36.32) MUTATED`
TCGA-DX-A1KX TCGA-DX-A3LW TCGA-DX-A3U5 TCGA-DX-A3U7 TCGA-DX-A3U9 TCGA-DX-A3UA 
       27.19       108.10        15.02        42.77        14.99        10.68 
TCGA-DX-A3UC TCGA-DX-A3UF TCGA-DX-A48J TCGA-DX-A48O TCGA-DX-A48P TCGA-DX-A48R 
       39.35        64.14         9.73        27.22        14.96        26.47 
TCGA-DX-A48U TCGA-DX-A48V TCGA-DX-A6BA TCGA-DX-A6BB TCGA-FX-A3RE TCGA-FX-A48G 
       72.72        25.08        54.87        10.78         0.07         0.07 
TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EK TCGA-IF-A4AK TCGA-IS-A3K7 
        4.14        12.62        21.37         1.38        31.76       143.41 
TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-MO-A47R TCGA-PC-A5DK 
      116.88        13.58        73.28        22.62         0.10        75.48 

$`DEL PEAK  1(1P36.32) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 
       14.04         2.04        12.85        24.49        18.51        46.68 
TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U 
       42.44        31.56        29.85        74.66         5.23        76.37 
TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 
       66.87         6.28        27.78        60.30         8.55         9.70 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LY 
       53.26        43.04         9.01        23.08        70.49        17.10 
TCGA-DX-A3M1 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-DX-A3UB TCGA-DX-A3UD TCGA-DX-A3UE 
       20.02        17.75         4.50        44.45        28.80        34.88 
TCGA-DX-A48K TCGA-DX-A48L TCGA-DX-A48N TCGA-DX-A6B9 TCGA-DX-A6BE TCGA-DX-A6BF 
       19.30        24.26        12.26        11.47        16.27         2.07 
TCGA-DX-A6BG TCGA-DX-A6BH TCGA-DX-A6BK TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-HB-A2OT 
        7.33         1.68        16.18         0.46         0.10        26.89 
TCGA-HB-A3YV TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IF-A4AJ TCGA-IS-A3K6 TCGA-IW-A3M5 
        4.54         8.94         3.22        25.22        28.21         5.88 
TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W TCGA-LI-A67I 
        6.25         1.05        11.70         5.23 

  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                          0.07                           0.10 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                        143.41                          76.37 
  DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE 
                        23.850                         16.685 
[1] "0.1 - 143.4 (23.9)" "0.1 - 76.4 (16.7)" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK  1(1P36.32) MUTATED" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK  1(1P36.32) WILD-TYPE"   "DEL PEAK  1(1P36.32) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"DEL PEAK  1(1P36.32) WILD-TYPE" "DEL PEAK  1(1P36.32) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
  "DEL PEAK  1(1P36.32) MUTATED"   "DEL PEAK  1(1P36.32) MUTATED" 
[1] "hr=" "2.9"
D18V2, continuous
D18V3, binary
                                cls
clus                              0  1
  DEL PEAK  1(1P36.32) MUTATED   19 11
  DEL PEAK  1(1P36.32) WILD-TYPE 21 31
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  1(1P36.32) MUTATED     19   11
  DEL PEAK  1(1P36.32) WILD-TYPE   21   31
        clus
vv       DEL PEAK  1(1P36.32) MUTATED DEL PEAK  1(1P36.32) WILD-TYPE
  FEMALE                           19                             21
  MALE                             11                             31

Clustering(19) Variable = DEL PEAK  2(1Q43) MUTATION ANALYSIS
D19V1, survival
                             sevent
clus2                          0  1
  DEL PEAK  2(1Q43) MUTATED   16  6
  DEL PEAK  2(1Q43) WILD-TYPE 42 18
  DEL PEAK  2(1Q43) MUTATED DEL PEAK  2(1Q43) WILD-TYPE 
                         22                          60 
  DEL PEAK  2(1Q43) MUTATED DEL PEAK  2(1Q43) WILD-TYPE 
                          6                          18 
$`DEL PEAK  2(1Q43) MUTATED`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 
       27.19        12.85        24.49        18.51        46.68        42.44 
TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3U5 TCGA-DX-A3U7 TCGA-DX-A48J TCGA-DX-A48U 
      108.10        17.10        15.02        42.77         9.73        72.72 
TCGA-DX-A6BA TCGA-DX-A6BF TCGA-FX-A2QS TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV 
       54.87         2.07         0.46         0.07        26.89         4.54 
TCGA-HB-A5W3 TCGA-IE-A4EJ TCGA-JV-A5VF TCGA-KF-A41W 
       12.62         3.22         1.05        11.70 

$`DEL PEAK  2(1Q43) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T 
       14.04         2.04        31.56        29.85        74.66         5.23 
TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ 
       76.37        66.87         6.28        27.78        60.30         8.55 
TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU 
        9.70        53.26        43.04         9.01        23.08        70.49 
TCGA-DX-A3M1 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-DX-A3U9 TCGA-DX-A3UA TCGA-DX-A3UB 
       20.02        17.75         4.50        14.99        10.68        44.45 
TCGA-DX-A3UC TCGA-DX-A3UD TCGA-DX-A3UE TCGA-DX-A3UF TCGA-DX-A48K TCGA-DX-A48L 
       39.35        28.80        34.88        64.14        19.30        24.26 
TCGA-DX-A48N TCGA-DX-A48O TCGA-DX-A48P TCGA-DX-A48R TCGA-DX-A48V TCGA-DX-A6B9 
       12.26        27.22        14.96        26.47        25.08        11.47 
TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BG TCGA-DX-A6BH TCGA-DX-A6BK TCGA-FX-A3NJ 
       10.78        16.27         7.33         1.68        16.18         0.10 
TCGA-FX-A3RE TCGA-HB-A43Z TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AJ 
        0.07         4.14        21.37         8.94         1.38        25.22 
TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 
       31.76        28.21       143.41       116.88        13.58        73.28 
TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-LI-A67I TCGA-MO-A47R TCGA-PC-A5DK 
        5.88        22.62         6.25         5.23         0.10        75.48 

  DEL PEAK  2(1Q43) MUTATED DEL PEAK  2(1Q43) WILD-TYPE 
                       0.07                        0.07 
  DEL PEAK  2(1Q43) MUTATED DEL PEAK  2(1Q43) WILD-TYPE 
                     108.10                      143.41 
  DEL PEAK  2(1Q43) MUTATED DEL PEAK  2(1Q43) WILD-TYPE 
                      16.06                       19.66 
[1] "0.1 - 108.1 (16.1)" "0.1 - 143.4 (19.7)"
                 TCGA-DX-A1KU                  TCGA-DX-A1KW 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A1KX                  TCGA-DX-A1KY 
  "DEL PEAK  2(1Q43) MUTATED"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-DX-A1KZ                  TCGA-DX-A1L0 
  "DEL PEAK  2(1Q43) MUTATED"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-DX-A1L1                  TCGA-DX-A1L2 
  "DEL PEAK  2(1Q43) MUTATED"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-DX-A1L3                  TCGA-DX-A1L4 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A23R                  TCGA-DX-A23T 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A23U                  TCGA-DX-A23V 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A23Y                  TCGA-DX-A23Z 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A240                  TCGA-DX-A2IZ 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A2J0                  TCGA-DX-A2J1 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A2J4                  TCGA-DX-A3LS 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A3LT                  TCGA-DX-A3LU 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A3LW                  TCGA-DX-A3LY 
  "DEL PEAK  2(1Q43) MUTATED"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-DX-A3M1                  TCGA-DX-A3U5 
"DEL PEAK  2(1Q43) WILD-TYPE"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-DX-A3U6                  TCGA-DX-A3U7 
"DEL PEAK  2(1Q43) WILD-TYPE"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-DX-A3U8                  TCGA-DX-A3U9 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A3UA                  TCGA-DX-A3UB 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A3UC                  TCGA-DX-A3UD 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A3UE                  TCGA-DX-A3UF 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A48J                  TCGA-DX-A48K 
  "DEL PEAK  2(1Q43) MUTATED" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A48L                  TCGA-DX-A48N 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A48O                  TCGA-DX-A48P 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A48R                  TCGA-DX-A48U 
"DEL PEAK  2(1Q43) WILD-TYPE"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-DX-A48V                  TCGA-DX-A6B9 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A6BA                  TCGA-DX-A6BB 
  "DEL PEAK  2(1Q43) MUTATED" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A6BE                  TCGA-DX-A6BF 
"DEL PEAK  2(1Q43) WILD-TYPE"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-DX-A6BG                  TCGA-DX-A6BH 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A6BK                  TCGA-FX-A2QS 
"DEL PEAK  2(1Q43) WILD-TYPE"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-FX-A3NJ                  TCGA-FX-A3RE 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-FX-A48G                  TCGA-HB-A2OT 
  "DEL PEAK  2(1Q43) MUTATED"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-HB-A3YV                  TCGA-HB-A43Z 
  "DEL PEAK  2(1Q43) MUTATED" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-HB-A5W3                  TCGA-IE-A4EH 
  "DEL PEAK  2(1Q43) MUTATED" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-IE-A4EI                  TCGA-IE-A4EJ 
"DEL PEAK  2(1Q43) WILD-TYPE"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-IE-A4EK                  TCGA-IF-A4AJ 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-IF-A4AK                  TCGA-IS-A3K6 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-IS-A3K7                  TCGA-IS-A3K8 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-IS-A3KA                  TCGA-IW-A3M4 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-IW-A3M5                  TCGA-IW-A3M6 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-JV-A5VE                  TCGA-JV-A5VF 
"DEL PEAK  2(1Q43) WILD-TYPE"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-KF-A41W                  TCGA-LI-A67I 
  "DEL PEAK  2(1Q43) MUTATED" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-MO-A47R                  TCGA-PC-A5DK 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A1KU                  TCGA-DX-A1KW 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A1KX                  TCGA-DX-A1KY 
  "DEL PEAK  2(1Q43) MUTATED"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-DX-A1KZ                  TCGA-DX-A1L0 
  "DEL PEAK  2(1Q43) MUTATED"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-DX-A1L1                  TCGA-DX-A1L2 
  "DEL PEAK  2(1Q43) MUTATED"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-DX-A1L3                  TCGA-DX-A1L4 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A23R                  TCGA-DX-A23T 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A23U                  TCGA-DX-A23V 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A23Y                  TCGA-DX-A23Z 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A240                  TCGA-DX-A2IZ 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A2J0                  TCGA-DX-A2J1 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A2J4                  TCGA-DX-A3LS 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A3LT                  TCGA-DX-A3LU 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A3LW                  TCGA-DX-A3LY 
  "DEL PEAK  2(1Q43) MUTATED"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-DX-A3M1                  TCGA-DX-A3U5 
"DEL PEAK  2(1Q43) WILD-TYPE"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-DX-A3U6                  TCGA-DX-A3U7 
"DEL PEAK  2(1Q43) WILD-TYPE"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-DX-A3U8                  TCGA-DX-A3U9 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A3UA                  TCGA-DX-A3UB 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A3UC                  TCGA-DX-A3UD 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A3UE                  TCGA-DX-A3UF 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A48J                  TCGA-DX-A48K 
  "DEL PEAK  2(1Q43) MUTATED" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A48L                  TCGA-DX-A48N 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A48O                  TCGA-DX-A48P 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A48R                  TCGA-DX-A48U 
"DEL PEAK  2(1Q43) WILD-TYPE"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-DX-A48V                  TCGA-DX-A6B9 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A6BA                  TCGA-DX-A6BB 
  "DEL PEAK  2(1Q43) MUTATED" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A6BE                  TCGA-DX-A6BF 
"DEL PEAK  2(1Q43) WILD-TYPE"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-DX-A6BG                  TCGA-DX-A6BH 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A6BK                  TCGA-FX-A2QS 
"DEL PEAK  2(1Q43) WILD-TYPE"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-FX-A3NJ                  TCGA-FX-A3RE 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-FX-A48G                  TCGA-HB-A2OT 
  "DEL PEAK  2(1Q43) MUTATED"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-HB-A3YV                  TCGA-HB-A43Z 
  "DEL PEAK  2(1Q43) MUTATED" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-HB-A5W3                  TCGA-IE-A4EH 
  "DEL PEAK  2(1Q43) MUTATED" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-IE-A4EI                  TCGA-IE-A4EJ 
"DEL PEAK  2(1Q43) WILD-TYPE"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-IE-A4EK                  TCGA-IF-A4AJ 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-IF-A4AK                  TCGA-IS-A3K6 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-IS-A3K7                  TCGA-IS-A3K8 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-IS-A3KA                  TCGA-IW-A3M4 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-IW-A3M5                  TCGA-IW-A3M6 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-JV-A5VE                  TCGA-JV-A5VF 
"DEL PEAK  2(1Q43) WILD-TYPE"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-KF-A41W                  TCGA-LI-A67I 
  "DEL PEAK  2(1Q43) MUTATED" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-MO-A47R                  TCGA-PC-A5DK 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A1KU                  TCGA-DX-A1KW 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A1KX                  TCGA-DX-A1KY 
  "DEL PEAK  2(1Q43) MUTATED"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-DX-A1KZ                  TCGA-DX-A1L0 
  "DEL PEAK  2(1Q43) MUTATED"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-DX-A1L1                  TCGA-DX-A1L2 
  "DEL PEAK  2(1Q43) MUTATED"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-DX-A1L3                  TCGA-DX-A1L4 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A23R                  TCGA-DX-A23T 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A23U                  TCGA-DX-A23V 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A23Y                  TCGA-DX-A23Z 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A240                  TCGA-DX-A2IZ 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A2J0                  TCGA-DX-A2J1 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A2J4                  TCGA-DX-A3LS 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A3LT                  TCGA-DX-A3LU 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A3LW                  TCGA-DX-A3LY 
  "DEL PEAK  2(1Q43) MUTATED"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-DX-A3M1                  TCGA-DX-A3U5 
"DEL PEAK  2(1Q43) WILD-TYPE"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-DX-A3U6                  TCGA-DX-A3U7 
"DEL PEAK  2(1Q43) WILD-TYPE"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-DX-A3U8                  TCGA-DX-A3U9 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A3UA                  TCGA-DX-A3UB 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A3UC                  TCGA-DX-A3UD 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A3UE                  TCGA-DX-A3UF 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A48J                  TCGA-DX-A48K 
  "DEL PEAK  2(1Q43) MUTATED" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A48L                  TCGA-DX-A48N 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A48O                  TCGA-DX-A48P 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A48R                  TCGA-DX-A48U 
"DEL PEAK  2(1Q43) WILD-TYPE"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-DX-A48V                  TCGA-DX-A6B9 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A6BA                  TCGA-DX-A6BB 
  "DEL PEAK  2(1Q43) MUTATED" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A6BE                  TCGA-DX-A6BF 
"DEL PEAK  2(1Q43) WILD-TYPE"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-DX-A6BG                  TCGA-DX-A6BH 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-DX-A6BK                  TCGA-FX-A2QS 
"DEL PEAK  2(1Q43) WILD-TYPE"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-FX-A3NJ                  TCGA-FX-A3RE 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-FX-A48G                  TCGA-HB-A2OT 
  "DEL PEAK  2(1Q43) MUTATED"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-HB-A3YV                  TCGA-HB-A43Z 
  "DEL PEAK  2(1Q43) MUTATED" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-HB-A5W3                  TCGA-IE-A4EH 
  "DEL PEAK  2(1Q43) MUTATED" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-IE-A4EI                  TCGA-IE-A4EJ 
"DEL PEAK  2(1Q43) WILD-TYPE"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-IE-A4EK                  TCGA-IF-A4AJ 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-IF-A4AK                  TCGA-IS-A3K6 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-IS-A3K7                  TCGA-IS-A3K8 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-IS-A3KA                  TCGA-IW-A3M4 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-IW-A3M5                  TCGA-IW-A3M6 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-JV-A5VE                  TCGA-JV-A5VF 
"DEL PEAK  2(1Q43) WILD-TYPE"   "DEL PEAK  2(1Q43) MUTATED" 
                 TCGA-KF-A41W                  TCGA-LI-A67I 
  "DEL PEAK  2(1Q43) MUTATED" "DEL PEAK  2(1Q43) WILD-TYPE" 
                 TCGA-MO-A47R                  TCGA-PC-A5DK 
"DEL PEAK  2(1Q43) WILD-TYPE" "DEL PEAK  2(1Q43) WILD-TYPE" 
[1] "hr=" "1"  
D19V2, continuous
D19V3, binary
                             cls
clus                           0  1
  DEL PEAK  2(1Q43) MUTATED   10 12
  DEL PEAK  2(1Q43) WILD-TYPE 30 30
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  2(1Q43) MUTATED     10   12
  DEL PEAK  2(1Q43) WILD-TYPE   30   30
        clus
vv       DEL PEAK  2(1Q43) MUTATED DEL PEAK  2(1Q43) WILD-TYPE
  FEMALE                        10                          30
  MALE                          12                          30

Clustering(20) Variable = DEL PEAK  3(2P25.3) MUTATION ANALYSIS
D20V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  3(2P25.3) MUTATED   20  6
  DEL PEAK  3(2P25.3) WILD-TYPE 38 18
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                           26                            56 
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                            6                            18 
$`DEL PEAK  3(2P25.3) MUTATED`
TCGA-DX-A1L2 TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U9 TCGA-DX-A3UC TCGA-DX-A3UD 
       42.44        17.10        20.02        14.99        39.35        28.80 
TCGA-DX-A3UE TCGA-DX-A3UF TCGA-DX-A48L TCGA-DX-A48O TCGA-DX-A48P TCGA-DX-A48V 
       34.88        64.14        24.26        27.22        14.96        25.08 
TCGA-DX-A6B9 TCGA-DX-A6BA TCGA-DX-A6BF TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A43Z 
       11.47        54.87         2.07         0.07        26.89         4.14 
TCGA-HB-A5W3 TCGA-IE-A4EJ TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3KA TCGA-IW-A3M4 
       12.62         3.22        25.22        31.76        13.58        73.28 
TCGA-IW-A3M6 TCGA-JV-A5VE 
       22.62         6.25 

$`DEL PEAK  3(2P25.3) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 
       14.04         2.04        27.19        12.85        24.49        18.51 
TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U 
       46.68        31.56        29.85        74.66         5.23        76.37 
TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 
       66.87         6.28        27.78        60.30         8.55         9.70 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW 
       53.26        43.04         9.01        23.08        70.49       108.10 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-DX-A3UA TCGA-DX-A3UB 
       15.02        17.75        42.77         4.50        10.68        44.45 
TCGA-DX-A48J TCGA-DX-A48K TCGA-DX-A48N TCGA-DX-A48R TCGA-DX-A48U TCGA-DX-A6BB 
        9.73        19.30        12.26        26.47        72.72        10.78 
TCGA-DX-A6BE TCGA-DX-A6BG TCGA-DX-A6BH TCGA-DX-A6BK TCGA-FX-A2QS TCGA-FX-A3NJ 
       16.27         7.33         1.68        16.18         0.46         0.10 
TCGA-FX-A3RE TCGA-HB-A3YV TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IS-A3K6 
        0.07         4.54        21.37         8.94         1.38        28.21 
TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IW-A3M5 TCGA-JV-A5VF TCGA-KF-A41W TCGA-LI-A67I 
      143.41       116.88         5.88         1.05        11.70         5.23 
TCGA-MO-A47R TCGA-PC-A5DK 
        0.10        75.48 

  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                         0.07                          0.07 
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                        73.28                        143.41 
  DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE 
                       23.440                        16.225 
[1] "0.1 - 73.3 (23.4)"  "0.1 - 143.4 (16.2)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK  3(2P25.3) WILD-TYPE"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK  3(2P25.3) WILD-TYPE"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK  3(2P25.3) MUTATED" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK  3(2P25.3) WILD-TYPE"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
  "DEL PEAK  3(2P25.3) MUTATED"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
  "DEL PEAK  3(2P25.3) MUTATED"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
  "DEL PEAK  3(2P25.3) MUTATED" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
  "DEL PEAK  3(2P25.3) MUTATED"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
  "DEL PEAK  3(2P25.3) MUTATED"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "DEL PEAK  3(2P25.3) MUTATED" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK  3(2P25.3) WILD-TYPE"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK  3(2P25.3) MUTATED"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK  3(2P25.3) WILD-TYPE"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "DEL PEAK  3(2P25.3) MUTATED" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  3(2P25.3) WILD-TYPE"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK  3(2P25.3) WILD-TYPE"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "DEL PEAK  3(2P25.3) MUTATED" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK  3(2P25.3) MUTATED"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK  3(2P25.3) WILD-TYPE"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK  3(2P25.3) MUTATED" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK  3(2P25.3) WILD-TYPE"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK  3(2P25.3) WILD-TYPE"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK  3(2P25.3) MUTATED" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK  3(2P25.3) WILD-TYPE"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
  "DEL PEAK  3(2P25.3) MUTATED"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
  "DEL PEAK  3(2P25.3) MUTATED"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
  "DEL PEAK  3(2P25.3) MUTATED" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
  "DEL PEAK  3(2P25.3) MUTATED"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
  "DEL PEAK  3(2P25.3) MUTATED"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "DEL PEAK  3(2P25.3) MUTATED" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK  3(2P25.3) WILD-TYPE"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK  3(2P25.3) MUTATED"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK  3(2P25.3) WILD-TYPE"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "DEL PEAK  3(2P25.3) MUTATED" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  3(2P25.3) WILD-TYPE"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK  3(2P25.3) WILD-TYPE"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "DEL PEAK  3(2P25.3) MUTATED" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK  3(2P25.3) MUTATED"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK  3(2P25.3) WILD-TYPE"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK  3(2P25.3) MUTATED" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK  3(2P25.3) WILD-TYPE"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK  3(2P25.3) WILD-TYPE"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK  3(2P25.3) MUTATED" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK  3(2P25.3) WILD-TYPE"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
  "DEL PEAK  3(2P25.3) MUTATED"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
  "DEL PEAK  3(2P25.3) MUTATED"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
  "DEL PEAK  3(2P25.3) MUTATED" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
  "DEL PEAK  3(2P25.3) MUTATED"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
  "DEL PEAK  3(2P25.3) MUTATED"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "DEL PEAK  3(2P25.3) MUTATED" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK  3(2P25.3) WILD-TYPE"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK  3(2P25.3) MUTATED"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK  3(2P25.3) WILD-TYPE"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "DEL PEAK  3(2P25.3) MUTATED" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  3(2P25.3) WILD-TYPE"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK  3(2P25.3) WILD-TYPE"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
  "DEL PEAK  3(2P25.3) MUTATED" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK  3(2P25.3) MUTATED"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK  3(2P25.3) WILD-TYPE"   "DEL PEAK  3(2P25.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK  3(2P25.3) MUTATED" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK  3(2P25.3) WILD-TYPE" "DEL PEAK  3(2P25.3) WILD-TYPE" 
[1] "hr=" "1.4"
D20V2, continuous
D20V3, binary
                               cls
clus                             0  1
  DEL PEAK  3(2P25.3) MUTATED   19  7
  DEL PEAK  3(2P25.3) WILD-TYPE 21 35
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  3(2P25.3) MUTATED     19    7
  DEL PEAK  3(2P25.3) WILD-TYPE   21   35
        clus
vv       DEL PEAK  3(2P25.3) MUTATED DEL PEAK  3(2P25.3) WILD-TYPE
  FEMALE                          19                            21
  MALE                             7                            35

Clustering(21) Variable = DEL PEAK  4(2Q37.3) MUTATION ANALYSIS
D21V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  4(2Q37.3) MUTATED   19 11
  DEL PEAK  4(2Q37.3) WILD-TYPE 39 13
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           30                            52 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                           11                            13 
$`DEL PEAK  4(2Q37.3) MUTATED`
TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A23Y TCGA-DX-A3LW 
       12.85        18.51        46.68        42.44         6.28       108.10 
TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U7 TCGA-DX-A3U9 TCGA-DX-A3UA TCGA-DX-A3UD 
       20.02        15.02        42.77        14.99        10.68        28.80 
TCGA-DX-A3UF TCGA-DX-A48L TCGA-DX-A48R TCGA-DX-A48V TCGA-DX-A6B9 TCGA-DX-A6BF 
       64.14        24.26        26.47        25.08        11.47         2.07 
TCGA-DX-A6BK TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-IE-A4EH TCGA-IE-A4EJ 
       16.18         0.07        26.89         4.54        21.37         3.22 
TCGA-IS-A3K6 TCGA-IS-A3KA TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W 
       28.21        13.58        22.62         6.25         1.05        11.70 

$`DEL PEAK  4(2Q37.3) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L3 TCGA-DX-A1L4 
       14.04         2.04        27.19        24.49        31.56        29.85 
TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 
       74.66         5.23        76.37        66.87        27.78        60.30 
TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT 
        8.55         9.70        53.26        43.04         9.01        23.08 
TCGA-DX-A3LU TCGA-DX-A3LY TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-DX-A3UB TCGA-DX-A3UC 
       70.49        17.10        17.75         4.50        44.45        39.35 
TCGA-DX-A3UE TCGA-DX-A48J TCGA-DX-A48K TCGA-DX-A48N TCGA-DX-A48O TCGA-DX-A48P 
       34.88         9.73        19.30        12.26        27.22        14.96 
TCGA-DX-A48U TCGA-DX-A6BA TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BG TCGA-DX-A6BH 
       72.72        54.87        10.78        16.27         7.33         1.68 
TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EI 
        0.46         0.10         0.07         4.14        12.62         8.94 
TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IW-A3M4 
        1.38        25.22        31.76       143.41       116.88        73.28 
TCGA-IW-A3M5 TCGA-LI-A67I TCGA-MO-A47R TCGA-PC-A5DK 
        5.88         5.23         0.10        75.48 

  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                         0.07                          0.07 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                       108.10                        143.41 
  DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE 
                       17.345                        18.525 
[1] "0.1 - 108.1 (17.3)" "0.1 - 143.4 (18.5)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK  4(2Q37.3) MUTATED"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK  4(2Q37.3) MUTATED"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
  "DEL PEAK  4(2Q37.3) MUTATED"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK  4(2Q37.3) MUTATED"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK  4(2Q37.3) MUTATED"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK  4(2Q37.3) MUTATED"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK  4(2Q37.3) MUTATED"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
  "DEL PEAK  4(2Q37.3) MUTATED"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK  4(2Q37.3) MUTATED"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK  4(2Q37.3) MUTATED"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK  4(2Q37.3) MUTATED"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK  4(2Q37.3) MUTATED"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
  "DEL PEAK  4(2Q37.3) MUTATED"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK  4(2Q37.3) MUTATED"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK  4(2Q37.3) WILD-TYPE"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK  4(2Q37.3) MUTATED"   "DEL PEAK  4(2Q37.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
  "DEL PEAK  4(2Q37.3) MUTATED" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK  4(2Q37.3) WILD-TYPE" "DEL PEAK  4(2Q37.3) WILD-TYPE" 
[1] "hr=" "1.7"
D21V2, continuous
D21V3, binary
                               cls
clus                             0  1
  DEL PEAK  4(2Q37.3) MUTATED   16 14
  DEL PEAK  4(2Q37.3) WILD-TYPE 24 28
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q37.3) MUTATED     16   14
  DEL PEAK  4(2Q37.3) WILD-TYPE   24   28
        clus
vv       DEL PEAK  4(2Q37.3) MUTATED DEL PEAK  4(2Q37.3) WILD-TYPE
  FEMALE                          16                            24
  MALE                            14                            28

Clustering(22) Variable = DEL PEAK  5(2Q37.3) MUTATION ANALYSIS
D22V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  5(2Q37.3) MUTATED   20 10
  DEL PEAK  5(2Q37.3) WILD-TYPE 38 14
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                           30                            52 
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                           10                            14 
$`DEL PEAK  5(2Q37.3) MUTATED`
TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A23Y TCGA-DX-A3LW 
       12.85        18.51        46.68        42.44         6.28       108.10 
TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U7 TCGA-DX-A3U9 TCGA-DX-A3UD TCGA-DX-A3UE 
       20.02        15.02        42.77        14.99        28.80        34.88 
TCGA-DX-A3UF TCGA-DX-A48R TCGA-DX-A48V TCGA-DX-A6BF TCGA-DX-A6BK TCGA-FX-A3RE 
       64.14        26.47        25.08         2.07        16.18         0.07 
TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-IE-A4EH TCGA-IE-A4EJ TCGA-IS-A3K6 
        0.07        26.89         4.54        21.37         3.22        28.21 
TCGA-IS-A3K7 TCGA-IS-A3KA TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W 
      143.41        13.58        22.62         6.25         1.05        11.70 

$`DEL PEAK  5(2Q37.3) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L3 TCGA-DX-A1L4 
       14.04         2.04        27.19        24.49        31.56        29.85 
TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 
       74.66         5.23        76.37        66.87        27.78        60.30 
TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT 
        8.55         9.70        53.26        43.04         9.01        23.08 
TCGA-DX-A3LU TCGA-DX-A3LY TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-DX-A3UA TCGA-DX-A3UB 
       70.49        17.10        17.75         4.50        10.68        44.45 
TCGA-DX-A3UC TCGA-DX-A48J TCGA-DX-A48K TCGA-DX-A48L TCGA-DX-A48N TCGA-DX-A48O 
       39.35         9.73        19.30        24.26        12.26        27.22 
TCGA-DX-A48P TCGA-DX-A48U TCGA-DX-A6B9 TCGA-DX-A6BA TCGA-DX-A6BB TCGA-DX-A6BE 
       14.96        72.72        11.47        54.87        10.78        16.27 
TCGA-DX-A6BG TCGA-DX-A6BH TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-HB-A43Z TCGA-HB-A5W3 
        7.33         1.68         0.46         0.10         4.14        12.62 
TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K8 TCGA-IW-A3M4 
        8.94         1.38        25.22        31.76       116.88        73.28 
TCGA-IW-A3M5 TCGA-LI-A67I TCGA-MO-A47R TCGA-PC-A5DK 
        5.88         5.23         0.10        75.48 

  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                         0.07                          0.10 
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                       143.41                        116.88 
  DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE 
                       19.265                        17.425 
[1] "0.1 - 143.4 (19.3)" "0.1 - 116.9 (17.4)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK  5(2Q37.3) MUTATED"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK  5(2Q37.3) MUTATED"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
  "DEL PEAK  5(2Q37.3) MUTATED"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK  5(2Q37.3) MUTATED"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK  5(2Q37.3) MUTATED"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK  5(2Q37.3) MUTATED"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK  5(2Q37.3) MUTATED"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
  "DEL PEAK  5(2Q37.3) MUTATED"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK  5(2Q37.3) MUTATED"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK  5(2Q37.3) MUTATED"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK  5(2Q37.3) MUTATED"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK  5(2Q37.3) MUTATED"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
  "DEL PEAK  5(2Q37.3) MUTATED"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK  5(2Q37.3) MUTATED"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK  5(2Q37.3) WILD-TYPE"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK  5(2Q37.3) MUTATED"   "DEL PEAK  5(2Q37.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
  "DEL PEAK  5(2Q37.3) MUTATED" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK  5(2Q37.3) WILD-TYPE" "DEL PEAK  5(2Q37.3) WILD-TYPE" 
[1] "hr=" "1.2"
D22V2, continuous
D22V3, binary
                               cls
clus                             0  1
  DEL PEAK  5(2Q37.3) MUTATED   16 14
  DEL PEAK  5(2Q37.3) WILD-TYPE 24 28
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(2Q37.3) MUTATED     16   14
  DEL PEAK  5(2Q37.3) WILD-TYPE   24   28
        clus
vv       DEL PEAK  5(2Q37.3) MUTATED DEL PEAK  5(2Q37.3) WILD-TYPE
  FEMALE                          16                            24
  MALE                            14                            28

Clustering(23) Variable = DEL PEAK  6(3P21.31) MUTATION ANALYSIS
D23V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  6(3P21.31) MUTATED   11  6
  DEL PEAK  6(3P21.31) WILD-TYPE 47 18
  DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE 
                            17                             65 
  DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE 
                             6                             18 
$`DEL PEAK  6(3P21.31) MUTATED`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L2 TCGA-DX-A3LS TCGA-DX-A3LY 
       27.19        12.85        18.51        42.44         9.01        17.10 
TCGA-DX-A3M1 TCGA-DX-A48N TCGA-FX-A3RE TCGA-HB-A3YV TCGA-IE-A4EJ TCGA-IS-A3K7 
       20.02        12.26         0.07         4.54         3.22       143.41 
TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-MO-A47R 
        5.88        22.62         6.25         1.05         0.10 

$`DEL PEAK  6(3P21.31) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A1L4 
       14.04         2.04        24.49        46.68        31.56        29.85 
TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z 
       74.66         5.23        76.37        66.87         6.28        27.78 
TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LT 
       60.30         8.55         9.70        53.26        43.04        23.08 
TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 
       70.49       108.10        15.02        17.75        42.77         4.50 
TCGA-DX-A3U9 TCGA-DX-A3UA TCGA-DX-A3UB TCGA-DX-A3UC TCGA-DX-A3UD TCGA-DX-A3UE 
       14.99        10.68        44.45        39.35        28.80        34.88 
TCGA-DX-A3UF TCGA-DX-A48J TCGA-DX-A48K TCGA-DX-A48L TCGA-DX-A48O TCGA-DX-A48P 
       64.14         9.73        19.30        24.26        27.22        14.96 
TCGA-DX-A48R TCGA-DX-A48U TCGA-DX-A48V TCGA-DX-A6B9 TCGA-DX-A6BA TCGA-DX-A6BB 
       26.47        72.72        25.08        11.47        54.87        10.78 
TCGA-DX-A6BE TCGA-DX-A6BF TCGA-DX-A6BG TCGA-DX-A6BH TCGA-DX-A6BK TCGA-FX-A2QS 
       16.27         2.07         7.33         1.68        16.18         0.46 
TCGA-FX-A3NJ TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH 
        0.10         0.07        26.89         4.14        12.62        21.37 
TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K8 
        8.94         1.38        25.22        31.76        28.21       116.88 
TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-KF-A41W TCGA-LI-A67I TCGA-PC-A5DK 
       13.58        73.28        11.70         5.23        75.48 

  DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE 
                          0.07                           0.07 
  DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE 
                        143.41                         116.88 
  DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE 
                         12.26                          23.08 
[1] "0.1 - 143.4 (12.3)" "0.1 - 116.9 (23.1)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK  6(3P21.31) WILD-TYPE"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK  6(3P21.31) MUTATED"   "DEL PEAK  6(3P21.31) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"DEL PEAK  6(3P21.31) WILD-TYPE" "DEL PEAK  6(3P21.31) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
  "DEL PEAK  6(3P21.31) MUTATED" "DEL PEAK  6(3P21.31) WILD-TYPE" 
[1] "hr=" "2"  
D23V2, continuous
D23V3, binary
                                cls
clus                              0  1
  DEL PEAK  6(3P21.31) MUTATED   10  7
  DEL PEAK  6(3P21.31) WILD-TYPE 30 35
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  6(3P21.31) MUTATED     10    7
  DEL PEAK  6(3P21.31) WILD-TYPE   30   35
        clus
vv       DEL PEAK  6(3P21.31) MUTATED DEL PEAK  6(3P21.31) WILD-TYPE
  FEMALE                           10                             30
  MALE                              7                             35

Clustering(24) Variable = DEL PEAK  7(3Q26.31) MUTATION ANALYSIS
D24V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  7(3Q26.31) MUTATED   15  4
  DEL PEAK  7(3Q26.31) WILD-TYPE 43 20
  DEL PEAK  7(3Q26.31) MUTATED DEL PEAK  7(3Q26.31) WILD-TYPE 
                            19                             63 
  DEL PEAK  7(3Q26.31) MUTATED DEL PEAK  7(3Q26.31) WILD-TYPE 
                             4                             20 
$`DEL PEAK  7(3Q26.31) MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A23Y 
        2.04        27.19        18.51        46.68        42.44         6.28 
TCGA-DX-A3LT TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3UA TCGA-DX-A3UF TCGA-DX-A48O 
       23.08        17.10        20.02        10.68        64.14        27.22 
TCGA-DX-A48R TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IE-A4EJ TCGA-IS-A3K7 TCGA-IW-A3M4 
       26.47         4.54         4.14         3.22       143.41        73.28 
TCGA-MO-A47R 
        0.10 

$`DEL PEAK  7(3Q26.31) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R 
       14.04        12.85        24.49        31.56        29.85        74.66 
TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ 
        5.23        76.37        66.87        27.78        60.30         8.55 
TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3LW 
        9.70        53.26        43.04         9.01        70.49       108.10 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-DX-A3U9 TCGA-DX-A3UB 
       15.02        17.75        42.77         4.50        14.99        44.45 
TCGA-DX-A3UC TCGA-DX-A3UD TCGA-DX-A3UE TCGA-DX-A48J TCGA-DX-A48K TCGA-DX-A48L 
       39.35        28.80        34.88         9.73        19.30        24.26 
TCGA-DX-A48N TCGA-DX-A48P TCGA-DX-A48U TCGA-DX-A48V TCGA-DX-A6B9 TCGA-DX-A6BA 
       12.26        14.96        72.72        25.08        11.47        54.87 
TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BF TCGA-DX-A6BG TCGA-DX-A6BH TCGA-DX-A6BK 
       10.78        16.27         2.07         7.33         1.68        16.18 
TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A5W3 
        0.46         0.10         0.07         0.07        26.89        12.62 
TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 
       21.37         8.94         1.38        25.22        31.76        28.21 
TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF 
      116.88        13.58         5.88        22.62         6.25         1.05 
TCGA-KF-A41W TCGA-LI-A67I TCGA-PC-A5DK 
       11.70         5.23        75.48 

  DEL PEAK  7(3Q26.31) MUTATED DEL PEAK  7(3Q26.31) WILD-TYPE 
                          0.10                           0.07 
  DEL PEAK  7(3Q26.31) MUTATED DEL PEAK  7(3Q26.31) WILD-TYPE 
                        143.41                         116.88 
  DEL PEAK  7(3Q26.31) MUTATED DEL PEAK  7(3Q26.31) WILD-TYPE 
                         20.02                          16.27 
[1] "0.1 - 143.4 (20.0)" "0.1 - 116.9 (16.3)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK  7(3Q26.31) WILD-TYPE"   "DEL PEAK  7(3Q26.31) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK  7(3Q26.31) MUTATED" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK  7(3Q26.31) WILD-TYPE"   "DEL PEAK  7(3Q26.31) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "DEL PEAK  7(3Q26.31) MUTATED"   "DEL PEAK  7(3Q26.31) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK  7(3Q26.31) MUTATED" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK  7(3Q26.31) MUTATED" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK  7(3Q26.31) WILD-TYPE"   "DEL PEAK  7(3Q26.31) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK  7(3Q26.31) MUTATED" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "DEL PEAK  7(3Q26.31) MUTATED" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK  7(3Q26.31) WILD-TYPE"   "DEL PEAK  7(3Q26.31) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK  7(3Q26.31) MUTATED" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK  7(3Q26.31) MUTATED" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK  7(3Q26.31) MUTATED"   "DEL PEAK  7(3Q26.31) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK  7(3Q26.31) WILD-TYPE"   "DEL PEAK  7(3Q26.31) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK  7(3Q26.31) MUTATED" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK  7(3Q26.31) WILD-TYPE"   "DEL PEAK  7(3Q26.31) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
  "DEL PEAK  7(3Q26.31) MUTATED" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK  7(3Q26.31) WILD-TYPE"   "DEL PEAK  7(3Q26.31) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK  7(3Q26.31) MUTATED" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK  7(3Q26.31) WILD-TYPE"   "DEL PEAK  7(3Q26.31) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "DEL PEAK  7(3Q26.31) MUTATED"   "DEL PEAK  7(3Q26.31) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK  7(3Q26.31) MUTATED" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK  7(3Q26.31) MUTATED" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK  7(3Q26.31) WILD-TYPE"   "DEL PEAK  7(3Q26.31) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK  7(3Q26.31) MUTATED" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "DEL PEAK  7(3Q26.31) MUTATED" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK  7(3Q26.31) WILD-TYPE"   "DEL PEAK  7(3Q26.31) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK  7(3Q26.31) MUTATED" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK  7(3Q26.31) MUTATED" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK  7(3Q26.31) MUTATED"   "DEL PEAK  7(3Q26.31) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK  7(3Q26.31) WILD-TYPE"   "DEL PEAK  7(3Q26.31) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK  7(3Q26.31) MUTATED" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK  7(3Q26.31) WILD-TYPE"   "DEL PEAK  7(3Q26.31) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
  "DEL PEAK  7(3Q26.31) MUTATED" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK  7(3Q26.31) WILD-TYPE"   "DEL PEAK  7(3Q26.31) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK  7(3Q26.31) MUTATED" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK  7(3Q26.31) WILD-TYPE"   "DEL PEAK  7(3Q26.31) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "DEL PEAK  7(3Q26.31) MUTATED"   "DEL PEAK  7(3Q26.31) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK  7(3Q26.31) MUTATED" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK  7(3Q26.31) MUTATED" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK  7(3Q26.31) WILD-TYPE"   "DEL PEAK  7(3Q26.31) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK  7(3Q26.31) MUTATED" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "DEL PEAK  7(3Q26.31) MUTATED" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK  7(3Q26.31) WILD-TYPE"   "DEL PEAK  7(3Q26.31) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK  7(3Q26.31) MUTATED" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK  7(3Q26.31) MUTATED" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK  7(3Q26.31) MUTATED"   "DEL PEAK  7(3Q26.31) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK  7(3Q26.31) WILD-TYPE"   "DEL PEAK  7(3Q26.31) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK  7(3Q26.31) MUTATED" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK  7(3Q26.31) WILD-TYPE"   "DEL PEAK  7(3Q26.31) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"DEL PEAK  7(3Q26.31) WILD-TYPE" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
  "DEL PEAK  7(3Q26.31) MUTATED" "DEL PEAK  7(3Q26.31) WILD-TYPE" 
[1] "hr=" "1.5"
D24V2, continuous
D24V3, binary
                                cls
clus                              0  1
  DEL PEAK  7(3Q26.31) MUTATED    9 10
  DEL PEAK  7(3Q26.31) WILD-TYPE 31 32
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK  7(3Q26.31) MUTATED      9   10
  DEL PEAK  7(3Q26.31) WILD-TYPE   31   32
        clus
vv       DEL PEAK  7(3Q26.31) MUTATED DEL PEAK  7(3Q26.31) WILD-TYPE
  FEMALE                            9                             31
  MALE                             10                             32

Clustering(25) Variable = DEL PEAK  8(4Q35.1) MUTATION ANALYSIS
D25V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  8(4Q35.1) MUTATED   21 11
  DEL PEAK  8(4Q35.1) WILD-TYPE 37 13
  DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE 
                           32                            50 
  DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE 
                           11                            13 
$`DEL PEAK  8(4Q35.1) MUTATED`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L1 TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A2IZ 
       27.19        12.85        46.68        74.66         6.28         8.55 
TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LW TCGA-DX-A3M1 TCGA-DX-A3U8 TCGA-DX-A3U9 
        9.01        23.08       108.10        20.02         4.50        14.99 
TCGA-DX-A3UD TCGA-DX-A3UE TCGA-DX-A3UF TCGA-DX-A48L TCGA-DX-A48R TCGA-DX-A6BA 
       28.80        34.88        64.14        24.26        26.47        54.87 
TCGA-FX-A2QS TCGA-HB-A2OT TCGA-HB-A43Z TCGA-IE-A4EH TCGA-IE-A4EJ TCGA-IE-A4EK 
        0.46        26.89         4.14        21.37         3.22         1.38 
TCGA-IF-A4AJ TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF 
       25.22        13.58         5.88        22.62         6.25         1.05 
TCGA-KF-A41W TCGA-MO-A47R 
       11.70         0.10 

$`DEL PEAK  8(4Q35.1) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L2 TCGA-DX-A1L3 
       14.04         2.04        24.49        18.51        42.44        31.56 
TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 
       29.85         5.23        76.37        66.87        27.78        60.30 
TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LU TCGA-DX-A3LY TCGA-DX-A3U5 
        9.70        53.26        43.04        70.49        17.10        15.02 
TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3UA TCGA-DX-A3UB TCGA-DX-A3UC TCGA-DX-A48J 
       17.75        42.77        10.68        44.45        39.35         9.73 
TCGA-DX-A48K TCGA-DX-A48N TCGA-DX-A48O TCGA-DX-A48P TCGA-DX-A48U TCGA-DX-A48V 
       19.30        12.26        27.22        14.96        72.72        25.08 
TCGA-DX-A6B9 TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BF TCGA-DX-A6BG TCGA-DX-A6BH 
       11.47        10.78        16.27         2.07         7.33         1.68 
TCGA-DX-A6BK TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A5W3 
       16.18         0.10         0.07         0.07         4.54        12.62 
TCGA-IE-A4EI TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IW-A3M4 
        8.94        31.76        28.21       143.41       116.88        73.28 
TCGA-LI-A67I TCGA-PC-A5DK 
        5.23        75.48 

  DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE 
                         0.10                          0.07 
  DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE 
                       108.10                        143.41 
  DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE 
                       17.505                        18.130 
[1] "0.1 - 108.1 (17.5)" "0.1 - 143.4 (18.1)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  8(4Q35.1) WILD-TYPE"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"DEL PEAK  8(4Q35.1) WILD-TYPE" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK  8(4Q35.1) MUTATED"   "DEL PEAK  8(4Q35.1) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
  "DEL PEAK  8(4Q35.1) MUTATED" "DEL PEAK  8(4Q35.1) WILD-TYPE" 
[1] "hr=" "1.7"
D25V2, continuous
D25V3, binary
                               cls
clus                             0  1
  DEL PEAK  8(4Q35.1) MUTATED   19 13
  DEL PEAK  8(4Q35.1) WILD-TYPE 21 29
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(4Q35.1) MUTATED     19   13
  DEL PEAK  8(4Q35.1) WILD-TYPE   21   29
        clus
vv       DEL PEAK  8(4Q35.1) MUTATED DEL PEAK  8(4Q35.1) WILD-TYPE
  FEMALE                          19                            21
  MALE                            13                            29

Clustering(26) Variable = DEL PEAK  9(5Q31.1) MUTATION ANALYSIS
D26V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  9(5Q31.1) MUTATED    7  2
  DEL PEAK  9(5Q31.1) WILD-TYPE 51 22
  DEL PEAK  9(5Q31.1) MUTATED DEL PEAK  9(5Q31.1) WILD-TYPE 
                            9                            73 
  DEL PEAK  9(5Q31.1) MUTATED DEL PEAK  9(5Q31.1) WILD-TYPE 
                            2                            22 
$`DEL PEAK  9(5Q31.1) MUTATED`
TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3UA TCGA-FX-A2QS TCGA-FX-A48G TCGA-HB-A2OT 
       20.02        15.02        10.68         0.46         0.07        26.89 
TCGA-IE-A4EH TCGA-IF-A4AJ TCGA-KF-A41W 
       21.37        25.22        11.70 

$`DEL PEAK  9(5Q31.1) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 
       14.04         2.04        27.19        12.85        24.49        18.51 
TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T 
       46.68        42.44        31.56        29.85        74.66         5.23 
TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ 
       76.37        66.87         6.28        27.78        60.30         8.55 
TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU 
        9.70        53.26        43.04         9.01        23.08        70.49 
TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-DX-A3U9 
      108.10        17.10        17.75        42.77         4.50        14.99 
TCGA-DX-A3UB TCGA-DX-A3UC TCGA-DX-A3UD TCGA-DX-A3UE TCGA-DX-A3UF TCGA-DX-A48J 
       44.45        39.35        28.80        34.88        64.14         9.73 
TCGA-DX-A48K TCGA-DX-A48L TCGA-DX-A48N TCGA-DX-A48O TCGA-DX-A48P TCGA-DX-A48R 
       19.30        24.26        12.26        27.22        14.96        26.47 
TCGA-DX-A48U TCGA-DX-A48V TCGA-DX-A6B9 TCGA-DX-A6BA TCGA-DX-A6BB TCGA-DX-A6BE 
       72.72        25.08        11.47        54.87        10.78        16.27 
TCGA-DX-A6BF TCGA-DX-A6BG TCGA-DX-A6BH TCGA-DX-A6BK TCGA-FX-A3NJ TCGA-FX-A3RE 
        2.07         7.33         1.68        16.18         0.10         0.07 
TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK 
        4.54         4.14        12.62         8.94         3.22         1.38 
TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 
       31.76        28.21       143.41       116.88        13.58        73.28 
TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-LI-A67I TCGA-MO-A47R 
        5.88        22.62         6.25         1.05         5.23         0.10 
TCGA-PC-A5DK 
       75.48 

  DEL PEAK  9(5Q31.1) MUTATED DEL PEAK  9(5Q31.1) WILD-TYPE 
                         0.07                          0.07 
  DEL PEAK  9(5Q31.1) MUTATED DEL PEAK  9(5Q31.1) WILD-TYPE 
                        26.89                        143.41 
  DEL PEAK  9(5Q31.1) MUTATED DEL PEAK  9(5Q31.1) WILD-TYPE 
                        15.02                         18.51 
[1] "0.1 - 26.9 (15.0)"  "0.1 - 143.4 (18.5)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK  9(5Q31.1) MUTATED"   "DEL PEAK  9(5Q31.1) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "DEL PEAK  9(5Q31.1) MUTATED" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"DEL PEAK  9(5Q31.1) WILD-TYPE"   "DEL PEAK  9(5Q31.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK  9(5Q31.1) MUTATED"   "DEL PEAK  9(5Q31.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK  9(5Q31.1) WILD-TYPE"   "DEL PEAK  9(5Q31.1) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK  9(5Q31.1) WILD-TYPE"   "DEL PEAK  9(5Q31.1) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
  "DEL PEAK  9(5Q31.1) MUTATED" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK  9(5Q31.1) MUTATED"   "DEL PEAK  9(5Q31.1) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "DEL PEAK  9(5Q31.1) MUTATED" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"DEL PEAK  9(5Q31.1) WILD-TYPE"   "DEL PEAK  9(5Q31.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK  9(5Q31.1) MUTATED"   "DEL PEAK  9(5Q31.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK  9(5Q31.1) WILD-TYPE"   "DEL PEAK  9(5Q31.1) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK  9(5Q31.1) WILD-TYPE"   "DEL PEAK  9(5Q31.1) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
  "DEL PEAK  9(5Q31.1) MUTATED" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK  9(5Q31.1) MUTATED"   "DEL PEAK  9(5Q31.1) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "DEL PEAK  9(5Q31.1) MUTATED" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"DEL PEAK  9(5Q31.1) WILD-TYPE"   "DEL PEAK  9(5Q31.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK  9(5Q31.1) MUTATED"   "DEL PEAK  9(5Q31.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK  9(5Q31.1) WILD-TYPE"   "DEL PEAK  9(5Q31.1) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK  9(5Q31.1) WILD-TYPE"   "DEL PEAK  9(5Q31.1) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
  "DEL PEAK  9(5Q31.1) MUTATED" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK  9(5Q31.1) WILD-TYPE" "DEL PEAK  9(5Q31.1) WILD-TYPE" 
[1] "hr=" "1.1"
D26V2, continuous
D26V3, binary
                               cls
clus                             0  1
  DEL PEAK  9(5Q31.1) MUTATED    6  3
  DEL PEAK  9(5Q31.1) WILD-TYPE 34 39
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(5Q31.1) MUTATED      6    3
  DEL PEAK  9(5Q31.1) WILD-TYPE   34   39
        clus
vv       DEL PEAK  9(5Q31.1) MUTATED DEL PEAK  9(5Q31.1) WILD-TYPE
  FEMALE                           6                            34
  MALE                             3                            39

Clustering(27) Variable = DEL PEAK 10(6P24.3) MUTATION ANALYSIS
D27V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 10(6P24.3) MUTATED   21 10
  DEL PEAK 10(6P24.3) WILD-TYPE 37 14
  DEL PEAK 10(6P24.3) MUTATED DEL PEAK 10(6P24.3) WILD-TYPE 
                           31                            51 
  DEL PEAK 10(6P24.3) MUTATED DEL PEAK 10(6P24.3) WILD-TYPE 
                           10                            14 
$`DEL PEAK 10(6P24.3) MUTATED`
TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A3LT TCGA-DX-A3LY 
       24.49        18.51        74.66         6.28        23.08        17.10 
TCGA-DX-A3M1 TCGA-DX-A3UA TCGA-DX-A3UC TCGA-DX-A3UD TCGA-DX-A3UE TCGA-DX-A3UF 
       20.02        10.68        39.35        28.80        34.88        64.14 
TCGA-DX-A48K TCGA-DX-A48L TCGA-DX-A48O TCGA-DX-A48P TCGA-DX-A48U TCGA-DX-A48V 
       19.30        24.26        27.22        14.96        72.72        25.08 
TCGA-DX-A6BA TCGA-DX-A6BB TCGA-DX-A6BF TCGA-DX-A6BK TCGA-FX-A48G TCGA-HB-A3YV 
       54.87        10.78         2.07        16.18         0.07         4.54 
TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EI TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IW-A3M6 
        4.14        12.62         8.94        28.21       143.41        22.62 
TCGA-JV-A5VF 
        1.05 

$`DEL PEAK 10(6P24.3) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L1 TCGA-DX-A1L2 
       14.04         2.04        27.19        12.85        46.68        42.44 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z 
       31.56        29.85         5.23        76.37        66.87        27.78 
TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS 
       60.30         8.55         9.70        53.26        43.04         9.01 
TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 
       70.49       108.10        15.02        17.75        42.77         4.50 
TCGA-DX-A3U9 TCGA-DX-A3UB TCGA-DX-A48J TCGA-DX-A48N TCGA-DX-A48R TCGA-DX-A6B9 
       14.99        44.45         9.73        12.26        26.47        11.47 
TCGA-DX-A6BE TCGA-DX-A6BG TCGA-DX-A6BH TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE 
       16.27         7.33         1.68         0.46         0.10         0.07 
TCGA-HB-A2OT TCGA-IE-A4EH TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK 
       26.89        21.37         3.22         1.38        25.22        31.76 
TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-JV-A5VE TCGA-KF-A41W 
      116.88        13.58        73.28         5.88         6.25        11.70 
TCGA-LI-A67I TCGA-MO-A47R TCGA-PC-A5DK 
        5.23         0.10        75.48 

  DEL PEAK 10(6P24.3) MUTATED DEL PEAK 10(6P24.3) WILD-TYPE 
                         0.07                          0.07 
  DEL PEAK 10(6P24.3) MUTATED DEL PEAK 10(6P24.3) WILD-TYPE 
                       143.41                        116.88 
  DEL PEAK 10(6P24.3) MUTATED DEL PEAK 10(6P24.3) WILD-TYPE 
                        20.02                         15.02 
[1] "0.1 - 143.4 (20.0)" "0.1 - 116.9 (15.0)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "DEL PEAK 10(6P24.3) MUTATED"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK 10(6P24.3) WILD-TYPE"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
  "DEL PEAK 10(6P24.3) MUTATED"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
  "DEL PEAK 10(6P24.3) MUTATED"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"DEL PEAK 10(6P24.3) WILD-TYPE"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
  "DEL PEAK 10(6P24.3) MUTATED"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"DEL PEAK 10(6P24.3) WILD-TYPE"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "DEL PEAK 10(6P24.3) MUTATED"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK 10(6P24.3) WILD-TYPE"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 10(6P24.3) MUTATED"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 10(6P24.3) WILD-TYPE"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK 10(6P24.3) WILD-TYPE"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK 10(6P24.3) WILD-TYPE"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "DEL PEAK 10(6P24.3) MUTATED"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK 10(6P24.3) WILD-TYPE"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
  "DEL PEAK 10(6P24.3) MUTATED"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
  "DEL PEAK 10(6P24.3) MUTATED"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"DEL PEAK 10(6P24.3) WILD-TYPE"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
  "DEL PEAK 10(6P24.3) MUTATED"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"DEL PEAK 10(6P24.3) WILD-TYPE"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "DEL PEAK 10(6P24.3) MUTATED"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK 10(6P24.3) WILD-TYPE"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 10(6P24.3) MUTATED"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 10(6P24.3) WILD-TYPE"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK 10(6P24.3) WILD-TYPE"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK 10(6P24.3) WILD-TYPE"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "DEL PEAK 10(6P24.3) MUTATED"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK 10(6P24.3) WILD-TYPE"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
  "DEL PEAK 10(6P24.3) MUTATED"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
  "DEL PEAK 10(6P24.3) MUTATED"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"DEL PEAK 10(6P24.3) WILD-TYPE"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
  "DEL PEAK 10(6P24.3) MUTATED"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"DEL PEAK 10(6P24.3) WILD-TYPE"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "DEL PEAK 10(6P24.3) MUTATED"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK 10(6P24.3) WILD-TYPE"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 10(6P24.3) MUTATED"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 10(6P24.3) WILD-TYPE"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 10(6P24.3) MUTATED" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK 10(6P24.3) WILD-TYPE"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK 10(6P24.3) WILD-TYPE"   "DEL PEAK 10(6P24.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK 10(6P24.3) WILD-TYPE" "DEL PEAK 10(6P24.3) WILD-TYPE" 
[1] "hr=" "1.1"
D27V2, continuous
D27V3, binary
                               cls
clus                             0  1
  DEL PEAK 10(6P24.3) MUTATED   19 12
  DEL PEAK 10(6P24.3) WILD-TYPE 21 30
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(6P24.3) MUTATED     19   12
  DEL PEAK 10(6P24.3) WILD-TYPE   21   30
        clus
vv       DEL PEAK 10(6P24.3) MUTATED DEL PEAK 10(6P24.3) WILD-TYPE
  FEMALE                          19                            21
  MALE                            12                            30

Clustering(28) Variable = DEL PEAK 11(6Q14.1) MUTATION ANALYSIS
D28V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 11(6Q14.1) MUTATED   12  6
  DEL PEAK 11(6Q14.1) WILD-TYPE 46 18
  DEL PEAK 11(6Q14.1) MUTATED DEL PEAK 11(6Q14.1) WILD-TYPE 
                           18                            64 
  DEL PEAK 11(6Q14.1) MUTATED DEL PEAK 11(6Q14.1) WILD-TYPE 
                            6                            18 
$`DEL PEAK 11(6Q14.1) MUTATED`
TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U7 TCGA-DX-A3U9 
       12.85        24.49        17.10        20.02        42.77        14.99 
TCGA-DX-A3UA TCGA-DX-A3UF TCGA-DX-A48K TCGA-DX-A48L TCGA-DX-A48P TCGA-DX-A6BA 
       10.68        64.14        19.30        24.26        14.96        54.87 
TCGA-FX-A2QS TCGA-HB-A43Z TCGA-IE-A4EJ TCGA-IF-A4AJ TCGA-JV-A5VE TCGA-JV-A5VF 
        0.46         4.14         3.22        25.22         6.25         1.05 

$`DEL PEAK 11(6Q14.1) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 
       14.04         2.04        27.19        18.51        46.68        42.44 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V 
       31.56        29.85        74.66         5.23        76.37        66.87 
TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 
        6.28        27.78        60.30         8.55         9.70        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3U5 
       43.04         9.01        23.08        70.49       108.10        15.02 
TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-DX-A3UB TCGA-DX-A3UC TCGA-DX-A3UD TCGA-DX-A3UE 
       17.75         4.50        44.45        39.35        28.80        34.88 
TCGA-DX-A48J TCGA-DX-A48N TCGA-DX-A48O TCGA-DX-A48R TCGA-DX-A48U TCGA-DX-A48V 
        9.73        12.26        27.22        26.47        72.72        25.08 
TCGA-DX-A6B9 TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BF TCGA-DX-A6BG TCGA-DX-A6BH 
       11.47        10.78        16.27         2.07         7.33         1.68 
TCGA-DX-A6BK TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV 
       16.18         0.10         0.07         0.07        26.89         4.54 
TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AK TCGA-IS-A3K6 
       12.62        21.37         8.94         1.38        31.76        28.21 
TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 
      143.41       116.88        13.58        73.28         5.88        22.62 
TCGA-KF-A41W TCGA-LI-A67I TCGA-MO-A47R TCGA-PC-A5DK 
       11.70         5.23         0.10        75.48 

  DEL PEAK 11(6Q14.1) MUTATED DEL PEAK 11(6Q14.1) WILD-TYPE 
                         0.46                          0.07 
  DEL PEAK 11(6Q14.1) MUTATED DEL PEAK 11(6Q14.1) WILD-TYPE 
                        64.14                        143.41 
  DEL PEAK 11(6Q14.1) MUTATED DEL PEAK 11(6Q14.1) WILD-TYPE 
                       16.045                        19.940 
[1] "0.5 - 64.1 (16.0)"  "0.1 - 143.4 (19.9)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "DEL PEAK 11(6Q14.1) MUTATED" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 11(6Q14.1) MUTATED" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "DEL PEAK 11(6Q14.1) MUTATED" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
  "DEL PEAK 11(6Q14.1) MUTATED" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "DEL PEAK 11(6Q14.1) MUTATED" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK 11(6Q14.1) MUTATED"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "DEL PEAK 11(6Q14.1) MUTATED" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 11(6Q14.1) MUTATED" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "DEL PEAK 11(6Q14.1) MUTATED" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
  "DEL PEAK 11(6Q14.1) MUTATED" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "DEL PEAK 11(6Q14.1) MUTATED" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK 11(6Q14.1) MUTATED"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "DEL PEAK 11(6Q14.1) MUTATED" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 11(6Q14.1) MUTATED" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "DEL PEAK 11(6Q14.1) MUTATED" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
  "DEL PEAK 11(6Q14.1) MUTATED" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "DEL PEAK 11(6Q14.1) MUTATED" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 11(6Q14.1) WILD-TYPE"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK 11(6Q14.1) MUTATED"   "DEL PEAK 11(6Q14.1) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK 11(6Q14.1) WILD-TYPE" "DEL PEAK 11(6Q14.1) WILD-TYPE" 
[1] "hr=" "1.5"
D28V2, continuous
D28V3, binary
                               cls
clus                             0  1
  DEL PEAK 11(6Q14.1) MUTATED   10  8
  DEL PEAK 11(6Q14.1) WILD-TYPE 30 34
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 11(6Q14.1) MUTATED     10    8
  DEL PEAK 11(6Q14.1) WILD-TYPE   30   34
        clus
vv       DEL PEAK 11(6Q14.1) MUTATED DEL PEAK 11(6Q14.1) WILD-TYPE
  FEMALE                          10                            30
  MALE                             8                            34

Clustering(29) Variable = DEL PEAK 12(7Q36.3) MUTATION ANALYSIS
D29V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 12(7Q36.3) MUTATED   13  6
  DEL PEAK 12(7Q36.3) WILD-TYPE 45 18
  DEL PEAK 12(7Q36.3) MUTATED DEL PEAK 12(7Q36.3) WILD-TYPE 
                           19                            63 
  DEL PEAK 12(7Q36.3) MUTATED DEL PEAK 12(7Q36.3) WILD-TYPE 
                            6                            18 
$`DEL PEAK 12(7Q36.3) MUTATED`
TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A3LY 
       27.19        18.51        29.85        74.66         6.28        17.10 
TCGA-DX-A3U7 TCGA-DX-A3UD TCGA-DX-A48J TCGA-DX-A48N TCGA-DX-A48P TCGA-DX-A48R 
       42.77        28.80         9.73        12.26        14.96        26.47 
TCGA-DX-A6BF TCGA-DX-A6BH TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IF-A4AJ TCGA-IW-A3M5 
        2.07         1.68         4.54         4.14        25.22         5.88 
TCGA-IW-A3M6 
       22.62 

$`DEL PEAK 12(7Q36.3) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L2 
       14.04         2.04        12.85        24.49        46.68        42.44 
TCGA-DX-A1L3 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 
       31.56         5.23        76.37        66.87        27.78        60.30 
TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT 
        8.55         9.70        53.26        43.04         9.01        23.08 
TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 
       70.49       108.10        20.02        15.02        17.75         4.50 
TCGA-DX-A3U9 TCGA-DX-A3UA TCGA-DX-A3UB TCGA-DX-A3UC TCGA-DX-A3UE TCGA-DX-A3UF 
       14.99        10.68        44.45        39.35        34.88        64.14 
TCGA-DX-A48K TCGA-DX-A48L TCGA-DX-A48O TCGA-DX-A48U TCGA-DX-A48V TCGA-DX-A6B9 
       19.30        24.26        27.22        72.72        25.08        11.47 
TCGA-DX-A6BA TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BG TCGA-DX-A6BK TCGA-FX-A2QS 
       54.87        10.78        16.27         7.33        16.18         0.46 
TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A5W3 TCGA-IE-A4EH 
        0.10         0.07         0.07        26.89        12.62        21.37 
TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 
        8.94         3.22         1.38        31.76        28.21       143.41 
TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W 
      116.88        13.58        73.28         6.25         1.05        11.70 
TCGA-LI-A67I TCGA-MO-A47R TCGA-PC-A5DK 
        5.23         0.10        75.48 

  DEL PEAK 12(7Q36.3) MUTATED DEL PEAK 12(7Q36.3) WILD-TYPE 
                         1.68                          0.07 
  DEL PEAK 12(7Q36.3) MUTATED DEL PEAK 12(7Q36.3) WILD-TYPE 
                        74.66                        143.41 
  DEL PEAK 12(7Q36.3) MUTATED DEL PEAK 12(7Q36.3) WILD-TYPE 
                         17.1                          19.3 
[1] "1.7 - 74.7 (17.1)"  "0.1 - 143.4 (19.3)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 12(7Q36.3) MUTATED" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK 12(7Q36.3) MUTATED" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 12(7Q36.3) MUTATED" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
  "DEL PEAK 12(7Q36.3) MUTATED" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "DEL PEAK 12(7Q36.3) MUTATED" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 12(7Q36.3) MUTATED"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK 12(7Q36.3) MUTATED"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 12(7Q36.3) MUTATED" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK 12(7Q36.3) MUTATED" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 12(7Q36.3) MUTATED" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
  "DEL PEAK 12(7Q36.3) MUTATED" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "DEL PEAK 12(7Q36.3) MUTATED" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 12(7Q36.3) MUTATED"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK 12(7Q36.3) MUTATED"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 12(7Q36.3) MUTATED" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK 12(7Q36.3) MUTATED" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 12(7Q36.3) MUTATED" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
  "DEL PEAK 12(7Q36.3) MUTATED" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "DEL PEAK 12(7Q36.3) MUTATED" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 12(7Q36.3) MUTATED"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 12(7Q36.3) WILD-TYPE"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK 12(7Q36.3) MUTATED"   "DEL PEAK 12(7Q36.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK 12(7Q36.3) WILD-TYPE" "DEL PEAK 12(7Q36.3) WILD-TYPE" 
[1] "hr=" "1.4"
D29V2, continuous
D29V3, binary
                               cls
clus                             0  1
  DEL PEAK 12(7Q36.3) MUTATED    7 12
  DEL PEAK 12(7Q36.3) WILD-TYPE 33 30
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 12(7Q36.3) MUTATED      7   12
  DEL PEAK 12(7Q36.3) WILD-TYPE   33   30
        clus
vv       DEL PEAK 12(7Q36.3) MUTATED DEL PEAK 12(7Q36.3) WILD-TYPE
  FEMALE                           7                            33
  MALE                            12                            30

Clustering(30) Variable = DEL PEAK 13(8P23.3) MUTATION ANALYSIS
D30V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 13(8P23.3) MUTATED   17  7
  DEL PEAK 13(8P23.3) WILD-TYPE 41 17
  DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE 
                           24                            58 
  DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE 
                            7                            17 
$`DEL PEAK 13(8P23.3) MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A23Y TCGA-DX-A3LS 
        2.04        27.19        24.49        18.51         6.28         9.01 
TCGA-DX-A3LT TCGA-DX-A3LW TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U7 TCGA-DX-A3UA 
       23.08       108.10        20.02        15.02        42.77        10.68 
TCGA-DX-A3UB TCGA-DX-A3UD TCGA-DX-A48J TCGA-DX-A48K TCGA-DX-A48R TCGA-DX-A6BK 
       44.45        28.80         9.73        19.30        26.47        16.18 
TCGA-FX-A2QS TCGA-FX-A3RE TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IS-A3K7 TCGA-JV-A5VE 
        0.46         0.07         4.54         4.14       143.41         6.25 

$`DEL PEAK 13(8P23.3) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KY TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 
       14.04        12.85        46.68        42.44        31.56        29.85 
TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 
       74.66         5.23        76.37        66.87        27.78        60.30 
TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LU TCGA-DX-A3LY 
        8.55         9.70        53.26        43.04        70.49        17.10 
TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-DX-A3U9 TCGA-DX-A3UC TCGA-DX-A3UE TCGA-DX-A3UF 
       17.75         4.50        14.99        39.35        34.88        64.14 
TCGA-DX-A48L TCGA-DX-A48N TCGA-DX-A48O TCGA-DX-A48P TCGA-DX-A48U TCGA-DX-A48V 
       24.26        12.26        27.22        14.96        72.72        25.08 
TCGA-DX-A6B9 TCGA-DX-A6BA TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BF TCGA-DX-A6BG 
       11.47        54.87        10.78        16.27         2.07         7.33 
TCGA-DX-A6BH TCGA-FX-A3NJ TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A5W3 TCGA-IE-A4EH 
        1.68         0.10         0.07        26.89        12.62        21.37 
TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 
        8.94         3.22         1.38        25.22        31.76        28.21 
TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VF 
      116.88        13.58        73.28         5.88        22.62         1.05 
TCGA-KF-A41W TCGA-LI-A67I TCGA-MO-A47R TCGA-PC-A5DK 
       11.70         5.23         0.10        75.48 

  DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE 
                         0.07                          0.07 
  DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE 
                       143.41                        116.88 
  DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE 
                       17.345                        19.560 
[1] "0.1 - 143.4 (17.3)" "0.1 - 116.9 (19.6)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 13(8P23.3) WILD-TYPE"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 13(8P23.3) MUTATED"   "DEL PEAK 13(8P23.3) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK 13(8P23.3) MUTATED" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK 13(8P23.3) WILD-TYPE" "DEL PEAK 13(8P23.3) WILD-TYPE" 
[1] "hr=" "1.1"
D30V2, continuous
D30V3, binary
                               cls
clus                             0  1
  DEL PEAK 13(8P23.3) MUTATED    9 15
  DEL PEAK 13(8P23.3) WILD-TYPE 31 27
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 13(8P23.3) MUTATED      9   15
  DEL PEAK 13(8P23.3) WILD-TYPE   31   27
        clus
vv       DEL PEAK 13(8P23.3) MUTATED DEL PEAK 13(8P23.3) WILD-TYPE
  FEMALE                           9                            31
  MALE                            15                            27

Clustering(31) Variable = DEL PEAK 14(9P24.3) MUTATION ANALYSIS
D31V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 14(9P24.3) MUTATED   23  9
  DEL PEAK 14(9P24.3) WILD-TYPE 35 15
  DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE 
                           32                            50 
  DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE 
                            9                            15 
$`DEL PEAK 14(9P24.3) MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A23V TCGA-DX-A23Y 
       14.04        24.49        46.68        42.44        66.87         6.28 
TCGA-DX-A23Z TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 
       27.78         9.01        23.08       108.10        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U7 TCGA-DX-A3UA TCGA-DX-A3UF TCGA-DX-A48J TCGA-DX-A48K 
       15.02        42.77        10.68        64.14         9.73        19.30 
TCGA-DX-A48V TCGA-DX-A6BA TCGA-DX-A6BF TCGA-DX-A6BK TCGA-FX-A2QS TCGA-FX-A3RE 
       25.08        54.87         2.07        16.18         0.46         0.07 
TCGA-HB-A2OT TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IS-A3K7 TCGA-IW-A3M5 TCGA-IW-A3M6 
       26.89         8.94         3.22       143.41         5.88        22.62 
TCGA-KF-A41W TCGA-MO-A47R 
       11.70         0.10 

$`DEL PEAK 14(9P24.3) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L3 TCGA-DX-A1L4 
        2.04        27.19        12.85        18.51        31.56        29.85 
TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 
       74.66         5.23        76.37        60.30         8.55         9.70 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LU TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-DX-A3U9 
       53.26        43.04        70.49        17.75         4.50        14.99 
TCGA-DX-A3UB TCGA-DX-A3UC TCGA-DX-A3UD TCGA-DX-A3UE TCGA-DX-A48L TCGA-DX-A48N 
       44.45        39.35        28.80        34.88        24.26        12.26 
TCGA-DX-A48O TCGA-DX-A48P TCGA-DX-A48R TCGA-DX-A48U TCGA-DX-A6B9 TCGA-DX-A6BB 
       27.22        14.96        26.47        72.72        11.47        10.78 
TCGA-DX-A6BE TCGA-DX-A6BG TCGA-DX-A6BH TCGA-FX-A3NJ TCGA-FX-A48G TCGA-HB-A3YV 
       16.27         7.33         1.68         0.10         0.07         4.54 
TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK 
        4.14        12.62        21.37         1.38        25.22        31.76 
TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-JV-A5VE TCGA-JV-A5VF 
       28.21       116.88        13.58        73.28         6.25         1.05 
TCGA-LI-A67I TCGA-PC-A5DK 
        5.23        75.48 

  DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE 
                         0.07                          0.07 
  DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE 
                       143.41                        116.88 
  DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE 
                        18.20                         18.13 
[1] "0.1 - 143.4 (18.2)" "0.1 - 116.9 (18.1)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
  "DEL PEAK 14(9P24.3) MUTATED" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "DEL PEAK 14(9P24.3) MUTATED" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK 14(9P24.3) MUTATED"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 14(9P24.3) WILD-TYPE"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 14(9P24.3) MUTATED"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 14(9P24.3) WILD-TYPE"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "DEL PEAK 14(9P24.3) MUTATED" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 14(9P24.3) MUTATED"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 14(9P24.3) MUTATED"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 14(9P24.3) WILD-TYPE"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "DEL PEAK 14(9P24.3) MUTATED" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"DEL PEAK 14(9P24.3) WILD-TYPE"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
  "DEL PEAK 14(9P24.3) MUTATED"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
  "DEL PEAK 14(9P24.3) MUTATED" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "DEL PEAK 14(9P24.3) MUTATED" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK 14(9P24.3) WILD-TYPE"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
  "DEL PEAK 14(9P24.3) MUTATED"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 14(9P24.3) WILD-TYPE"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK 14(9P24.3) WILD-TYPE"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "DEL PEAK 14(9P24.3) MUTATED"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 14(9P24.3) MUTATED" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK 14(9P24.3) MUTATED"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
  "DEL PEAK 14(9P24.3) MUTATED" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
  "DEL PEAK 14(9P24.3) MUTATED" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
  "DEL PEAK 14(9P24.3) MUTATED" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "DEL PEAK 14(9P24.3) MUTATED" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK 14(9P24.3) MUTATED"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 14(9P24.3) WILD-TYPE"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 14(9P24.3) MUTATED"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 14(9P24.3) WILD-TYPE"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "DEL PEAK 14(9P24.3) MUTATED" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 14(9P24.3) MUTATED"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 14(9P24.3) MUTATED"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 14(9P24.3) WILD-TYPE"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "DEL PEAK 14(9P24.3) MUTATED" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"DEL PEAK 14(9P24.3) WILD-TYPE"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
  "DEL PEAK 14(9P24.3) MUTATED"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
  "DEL PEAK 14(9P24.3) MUTATED" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "DEL PEAK 14(9P24.3) MUTATED" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK 14(9P24.3) WILD-TYPE"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
  "DEL PEAK 14(9P24.3) MUTATED"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 14(9P24.3) WILD-TYPE"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK 14(9P24.3) WILD-TYPE"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "DEL PEAK 14(9P24.3) MUTATED"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 14(9P24.3) MUTATED" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK 14(9P24.3) MUTATED"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
  "DEL PEAK 14(9P24.3) MUTATED" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
  "DEL PEAK 14(9P24.3) MUTATED" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
  "DEL PEAK 14(9P24.3) MUTATED" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "DEL PEAK 14(9P24.3) MUTATED" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK 14(9P24.3) MUTATED"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 14(9P24.3) WILD-TYPE"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 14(9P24.3) MUTATED"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 14(9P24.3) WILD-TYPE"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
  "DEL PEAK 14(9P24.3) MUTATED" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 14(9P24.3) MUTATED"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 14(9P24.3) MUTATED"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 14(9P24.3) WILD-TYPE"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "DEL PEAK 14(9P24.3) MUTATED" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"DEL PEAK 14(9P24.3) WILD-TYPE"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
  "DEL PEAK 14(9P24.3) MUTATED"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
  "DEL PEAK 14(9P24.3) MUTATED" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "DEL PEAK 14(9P24.3) MUTATED" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK 14(9P24.3) WILD-TYPE"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
  "DEL PEAK 14(9P24.3) MUTATED"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 14(9P24.3) WILD-TYPE"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
"DEL PEAK 14(9P24.3) WILD-TYPE"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "DEL PEAK 14(9P24.3) MUTATED"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 14(9P24.3) MUTATED" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK 14(9P24.3) MUTATED"   "DEL PEAK 14(9P24.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK 14(9P24.3) WILD-TYPE" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
  "DEL PEAK 14(9P24.3) MUTATED" "DEL PEAK 14(9P24.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
  "DEL PEAK 14(9P24.3) MUTATED" "DEL PEAK 14(9P24.3) WILD-TYPE" 
[1] "hr=" "1"  
D31V2, continuous
D31V3, binary
                               cls
clus                             0  1
  DEL PEAK 14(9P24.3) MUTATED   17 15
  DEL PEAK 14(9P24.3) WILD-TYPE 23 27
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 14(9P24.3) MUTATED     17   15
  DEL PEAK 14(9P24.3) WILD-TYPE   23   27
        clus
vv       DEL PEAK 14(9P24.3) MUTATED DEL PEAK 14(9P24.3) WILD-TYPE
  FEMALE                          17                            23
  MALE                            15                            27

Clustering(32) Variable = DEL PEAK 15(9P21.3) MUTATION ANALYSIS
D32V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 15(9P21.3) MUTATED   26 11
  DEL PEAK 15(9P21.3) WILD-TYPE 32 13
  DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE 
                           37                            45 
  DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE 
                           11                            13 
$`DEL PEAK 15(9P21.3) MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 
       14.04        27.19        12.85        24.49        18.51        46.68 
TCGA-DX-A1L2 TCGA-DX-A23R TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A3LS TCGA-DX-A3LW 
       42.44        74.66        66.87         6.28         9.01       108.10 
TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-DX-A3UA 
       17.10        20.02        15.02        42.77         4.50        10.68 
TCGA-DX-A3UD TCGA-DX-A3UF TCGA-DX-A48J TCGA-DX-A48R TCGA-DX-A48V TCGA-DX-A6BA 
       28.80        64.14         9.73        26.47        25.08        54.87 
TCGA-DX-A6BF TCGA-DX-A6BK TCGA-FX-A2QS TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT 
        2.07        16.18         0.46         0.07         0.07        26.89 
TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IS-A3K7 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-KF-A41W 
        8.94         3.22       143.41         5.88        22.62        11.70 
TCGA-MO-A47R 
        0.10 

$`DEL PEAK 15(9P21.3) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23Z 
        2.04        31.56        29.85         5.23        76.37        27.78 
TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LT 
       60.30         8.55         9.70        53.26        43.04        23.08 
TCGA-DX-A3LU TCGA-DX-A3U6 TCGA-DX-A3U9 TCGA-DX-A3UB TCGA-DX-A3UC TCGA-DX-A3UE 
       70.49        17.75        14.99        44.45        39.35        34.88 
TCGA-DX-A48K TCGA-DX-A48L TCGA-DX-A48N TCGA-DX-A48O TCGA-DX-A48P TCGA-DX-A48U 
       19.30        24.26        12.26        27.22        14.96        72.72 
TCGA-DX-A6B9 TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BG TCGA-DX-A6BH TCGA-FX-A3NJ 
       11.47        10.78        16.27         7.33         1.68         0.10 
TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EK TCGA-IF-A4AJ 
        4.54         4.14        12.62        21.37         1.38        25.22 
TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-JV-A5VE 
       31.76        28.21       116.88        13.58        73.28         6.25 
TCGA-JV-A5VF TCGA-LI-A67I TCGA-PC-A5DK 
        1.05         5.23        75.48 

  DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE 
                         0.07                          0.10 
  DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE 
                       143.41                        116.88 
  DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE 
                         17.1                          19.3 
[1] "0.1 - 143.4 (17.1)" "0.1 - 116.9 (19.3)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 15(9P21.3) WILD-TYPE"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK 15(9P21.3) MUTATED"   "DEL PEAK 15(9P21.3) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
"DEL PEAK 15(9P21.3) WILD-TYPE" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
  "DEL PEAK 15(9P21.3) MUTATED" "DEL PEAK 15(9P21.3) WILD-TYPE" 
[1] "hr=" "1.1"
D32V2, continuous
D32V3, binary
                               cls
clus                             0  1
  DEL PEAK 15(9P21.3) MUTATED   20 17
  DEL PEAK 15(9P21.3) WILD-TYPE 20 25
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 15(9P21.3) MUTATED     20   17
  DEL PEAK 15(9P21.3) WILD-TYPE   20   25
        clus
vv       DEL PEAK 15(9P21.3) MUTATED DEL PEAK 15(9P21.3) WILD-TYPE
  FEMALE                          20                            20
  MALE                            17                            25

Clustering(33) Variable = DEL PEAK 16(9Q34.3) MUTATION ANALYSIS
D33V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 16(9Q34.3) MUTATED   11  7
  DEL PEAK 16(9Q34.3) WILD-TYPE 47 17
  DEL PEAK 16(9Q34.3) MUTATED DEL PEAK 16(9Q34.3) WILD-TYPE 
                           18                            64 
  DEL PEAK 16(9Q34.3) MUTATED DEL PEAK 16(9Q34.3) WILD-TYPE 
                            7                            17 
$`DEL PEAK 16(9Q34.3) MUTATED`
TCGA-DX-A1KU TCGA-DX-A3M1 TCGA-DX-A3UC TCGA-DX-A3UD TCGA-DX-A48J TCGA-DX-A48R 
       14.04        20.02        39.35        28.80         9.73        26.47 
TCGA-DX-A48V TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-IE-A4EH TCGA-IF-A4AJ 
       25.08         0.07        26.89         4.54        21.37        25.22 
TCGA-IS-A3K7 TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-MO-A47R 
      143.41        13.58         5.88         6.25         1.05         0.10 

$`DEL PEAK 16(9Q34.3) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 
        2.04        27.19        12.85        24.49        18.51        46.68 
TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U 
       42.44        31.56        29.85        74.66         5.23        76.37 
TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 
       66.87         6.28        27.78        60.30         8.55         9.70 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW 
       53.26        43.04         9.01        23.08        70.49       108.10 
TCGA-DX-A3LY TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-DX-A3U9 
       17.10        15.02        17.75        42.77         4.50        14.99 
TCGA-DX-A3UA TCGA-DX-A3UB TCGA-DX-A3UE TCGA-DX-A3UF TCGA-DX-A48K TCGA-DX-A48L 
       10.68        44.45        34.88        64.14        19.30        24.26 
TCGA-DX-A48N TCGA-DX-A48O TCGA-DX-A48P TCGA-DX-A48U TCGA-DX-A6B9 TCGA-DX-A6BA 
       12.26        27.22        14.96        72.72        11.47        54.87 
TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BF TCGA-DX-A6BG TCGA-DX-A6BH TCGA-DX-A6BK 
       10.78        16.27         2.07         7.33         1.68        16.18 
TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EI 
        0.46         0.10         0.07         4.14        12.62         8.94 
TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IW-A3M4 
        3.22         1.38        31.76        28.21       116.88        73.28 
TCGA-IW-A3M6 TCGA-KF-A41W TCGA-LI-A67I TCGA-PC-A5DK 
       22.62        11.70         5.23        75.48 

  DEL PEAK 16(9Q34.3) MUTATED DEL PEAK 16(9Q34.3) WILD-TYPE 
                         0.07                          0.07 
  DEL PEAK 16(9Q34.3) MUTATED DEL PEAK 16(9Q34.3) WILD-TYPE 
                       143.41                        116.88 
  DEL PEAK 16(9Q34.3) MUTATED DEL PEAK 16(9Q34.3) WILD-TYPE 
                        17.03                         18.13 
[1] "0.1 - 143.4 (17.0)" "0.1 - 116.9 (18.1)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
  "DEL PEAK 16(9Q34.3) MUTATED"   "DEL PEAK 16(9Q34.3) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 16(9Q34.3) MUTATED"   "DEL PEAK 16(9Q34.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 16(9Q34.3) WILD-TYPE"   "DEL PEAK 16(9Q34.3) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 16(9Q34.3) WILD-TYPE"   "DEL PEAK 16(9Q34.3) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK 16(9Q34.3) MUTATED"   "DEL PEAK 16(9Q34.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
  "DEL PEAK 16(9Q34.3) MUTATED"   "DEL PEAK 16(9Q34.3) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 16(9Q34.3) MUTATED"   "DEL PEAK 16(9Q34.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 16(9Q34.3) WILD-TYPE"   "DEL PEAK 16(9Q34.3) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 16(9Q34.3) WILD-TYPE"   "DEL PEAK 16(9Q34.3) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK 16(9Q34.3) MUTATED"   "DEL PEAK 16(9Q34.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
  "DEL PEAK 16(9Q34.3) MUTATED"   "DEL PEAK 16(9Q34.3) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 16(9Q34.3) MUTATED"   "DEL PEAK 16(9Q34.3) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
"DEL PEAK 16(9Q34.3) WILD-TYPE"   "DEL PEAK 16(9Q34.3) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 16(9Q34.3) WILD-TYPE"   "DEL PEAK 16(9Q34.3) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK 16(9Q34.3) MUTATED"   "DEL PEAK 16(9Q34.3) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"DEL PEAK 16(9Q34.3) WILD-TYPE" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
  "DEL PEAK 16(9Q34.3) MUTATED" "DEL PEAK 16(9Q34.3) WILD-TYPE" 
[1] "hr=" "1.8"
D33V2, continuous
D33V3, binary
                               cls
clus                             0  1
  DEL PEAK 16(9Q34.3) MUTATED   10  8
  DEL PEAK 16(9Q34.3) WILD-TYPE 30 34
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 16(9Q34.3) MUTATED     10    8
  DEL PEAK 16(9Q34.3) WILD-TYPE   30   34
        clus
vv       DEL PEAK 16(9Q34.3) MUTATED DEL PEAK 16(9Q34.3) WILD-TYPE
  FEMALE                          10                            30
  MALE                             8                            34

Clustering(34) Variable = DEL PEAK 17(10P15.3) MUTATION ANALYSIS
D34V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 17(10P15.3) MUTATED   29  9
  DEL PEAK 17(10P15.3) WILD-TYPE 29 15
  DEL PEAK 17(10P15.3) MUTATED DEL PEAK 17(10P15.3) WILD-TYPE 
                            38                             44 
  DEL PEAK 17(10P15.3) MUTATED DEL PEAK 17(10P15.3) WILD-TYPE 
                             9                             15 
$`DEL PEAK 17(10P15.3) MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A1L2 TCGA-DX-A23R TCGA-DX-A23Y 
        2.04        27.19        18.51        42.44        74.66         6.28 
TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3U5 TCGA-DX-A3UA TCGA-DX-A3UD TCGA-DX-A3UE 
      108.10        17.10        15.02        10.68        28.80        34.88 
TCGA-DX-A3UF TCGA-DX-A48K TCGA-DX-A48N TCGA-DX-A48P TCGA-DX-A48R TCGA-DX-A6B9 
       64.14        19.30        12.26        14.96        26.47        11.47 
TCGA-DX-A6BA TCGA-DX-A6BB TCGA-DX-A6BK TCGA-FX-A2QS TCGA-FX-A3RE TCGA-HB-A2OT 
       54.87        10.78        16.18         0.46         0.07        26.89 
TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IF-A4AJ 
        4.54         4.14        12.62         8.94         3.22        25.22 
TCGA-IF-A4AK TCGA-IS-A3K7 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-KF-A41W 
       31.76       143.41         5.88        22.62         6.25        11.70 
TCGA-MO-A47R TCGA-PC-A5DK 
        0.10        75.48 

$`DEL PEAK 17(10P15.3) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A1L4 
       14.04        12.85        24.49        46.68        31.56        29.85 
TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ 
        5.23        76.37        66.87        27.78        60.30         8.55 
TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU 
        9.70        53.26        43.04         9.01        23.08        70.49 
TCGA-DX-A3M1 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-DX-A3U9 TCGA-DX-A3UB 
       20.02        17.75        42.77         4.50        14.99        44.45 
TCGA-DX-A3UC TCGA-DX-A48J TCGA-DX-A48L TCGA-DX-A48O TCGA-DX-A48U TCGA-DX-A48V 
       39.35         9.73        24.26        27.22        72.72        25.08 
TCGA-DX-A6BE TCGA-DX-A6BF TCGA-DX-A6BG TCGA-DX-A6BH TCGA-FX-A3NJ TCGA-FX-A48G 
       16.27         2.07         7.33         1.68         0.10         0.07 
TCGA-IE-A4EH TCGA-IE-A4EK TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 
       21.37         1.38        28.21       116.88        13.58        73.28 
TCGA-JV-A5VF TCGA-LI-A67I 
        1.05         5.23 

  DEL PEAK 17(10P15.3) MUTATED DEL PEAK 17(10P15.3) WILD-TYPE 
                          0.07                           0.07 
  DEL PEAK 17(10P15.3) MUTATED DEL PEAK 17(10P15.3) WILD-TYPE 
                        143.41                         116.88 
  DEL PEAK 17(10P15.3) MUTATED DEL PEAK 17(10P15.3) WILD-TYPE 
                        15.600                         22.225 
[1] "0.1 - 143.4 (15.6)" "0.1 - 116.9 (22.2)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 17(10P15.3) MUTATED"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
  "DEL PEAK 17(10P15.3) MUTATED"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK 17(10P15.3) MUTATED"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
  "DEL PEAK 17(10P15.3) MUTATED"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 17(10P15.3) MUTATED"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 17(10P15.3) MUTATED"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 17(10P15.3) MUTATED"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
  "DEL PEAK 17(10P15.3) MUTATED"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 17(10P15.3) MUTATED"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
  "DEL PEAK 17(10P15.3) MUTATED"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK 17(10P15.3) MUTATED"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
  "DEL PEAK 17(10P15.3) MUTATED"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 17(10P15.3) MUTATED"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 17(10P15.3) MUTATED"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 17(10P15.3) MUTATED"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
  "DEL PEAK 17(10P15.3) MUTATED"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 17(10P15.3) MUTATED"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
  "DEL PEAK 17(10P15.3) MUTATED"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK 17(10P15.3) MUTATED"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
  "DEL PEAK 17(10P15.3) MUTATED"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 17(10P15.3) MUTATED"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 17(10P15.3) MUTATED"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 17(10P15.3) WILD-TYPE"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 17(10P15.3) WILD-TYPE" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 17(10P15.3) MUTATED"   "DEL PEAK 17(10P15.3) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 17(10P15.3) MUTATED" "DEL PEAK 17(10P15.3) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
  "DEL PEAK 17(10P15.3) MUTATED"   "DEL PEAK 17(10P15.3) MUTATED" 
[1] "hr=" "1.3"
D34V2, continuous
D34V3, binary
                                cls
clus                              0  1
  DEL PEAK 17(10P15.3) MUTATED   23 15
  DEL PEAK 17(10P15.3) WILD-TYPE 17 27
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(10P15.3) MUTATED     23   15
  DEL PEAK 17(10P15.3) WILD-TYPE   17   27
        clus
vv       DEL PEAK 17(10P15.3) MUTATED DEL PEAK 17(10P15.3) WILD-TYPE
  FEMALE                           23                             17
  MALE                             15                             27

Clustering(35) Variable = DEL PEAK 18(10Q23.31) MUTATION ANALYSIS
D35V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 18(10Q23.31) MUTATED   30 14
  DEL PEAK 18(10Q23.31) WILD-TYPE 28 10
  DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE 
                             44                              38 
  DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE 
                             14                              10 
$`DEL PEAK 18(10Q23.31) MUTATED`
TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A23Y TCGA-DX-A3U7 TCGA-DX-A3U9 
       27.19        24.49        18.51         6.28        42.77        14.99 
TCGA-DX-A3UA TCGA-DX-A3UC TCGA-DX-A3UD TCGA-DX-A3UE TCGA-DX-A3UF TCGA-DX-A48J 
       10.68        39.35        28.80        34.88        64.14         9.73 
TCGA-DX-A48K TCGA-DX-A48L TCGA-DX-A48O TCGA-DX-A48P TCGA-DX-A48R TCGA-DX-A48U 
       19.30        24.26        27.22        14.96        26.47        72.72 
TCGA-DX-A6B9 TCGA-DX-A6BA TCGA-DX-A6BB TCGA-DX-A6BF TCGA-DX-A6BK TCGA-FX-A3NJ 
       11.47        54.87        10.78         2.07        16.18         0.10 
TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 
        0.07         0.07        26.89         4.54         4.14        12.62 
TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK 
       21.37         8.94         3.22         1.38        25.22        31.76 
TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3KA TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF 
       28.21       143.41        13.58        22.62         6.25         1.05 
TCGA-KF-A41W TCGA-MO-A47R 
       11.70         0.10 

$`DEL PEAK 18(10Q23.31) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 
       14.04         2.04        12.85        46.68        42.44        31.56 
TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z 
       29.85        74.66         5.23        76.37        66.87        27.78 
TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS 
       60.30         8.55         9.70        53.26        43.04         9.01 
TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 
       23.08        70.49       108.10        17.10        20.02        15.02 
TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-DX-A3UB TCGA-DX-A48N TCGA-DX-A48V TCGA-DX-A6BE 
       17.75         4.50        44.45        12.26        25.08        16.27 
TCGA-DX-A6BG TCGA-DX-A6BH TCGA-FX-A2QS TCGA-IS-A3K8 TCGA-IW-A3M4 TCGA-IW-A3M5 
        7.33         1.68         0.46       116.88        73.28         5.88 
TCGA-LI-A67I TCGA-PC-A5DK 
        5.23        75.48 

  DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE 
                           0.07                            0.46 
  DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE 
                         143.41                          116.88 
  DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE 
                         15.585                          21.550 
[1] "0.1 - 143.4 (15.6)" "0.5 - 116.9 (21.5)"
                     TCGA-DX-A1KU                      TCGA-DX-A1KW 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A1KX                      TCGA-DX-A1KY 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A1KZ                      TCGA-DX-A1L0 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A1L1                      TCGA-DX-A1L2 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A1L3                      TCGA-DX-A1L4 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A23R                      TCGA-DX-A23T 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A23U                      TCGA-DX-A23V 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A23Y                      TCGA-DX-A23Z 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A240                      TCGA-DX-A2IZ 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A2J0                      TCGA-DX-A2J1 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A2J4                      TCGA-DX-A3LS 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A3LT                      TCGA-DX-A3LU 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A3LW                      TCGA-DX-A3LY 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A3M1                      TCGA-DX-A3U5 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A3U6                      TCGA-DX-A3U7 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A3U8                      TCGA-DX-A3U9 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A3UA                      TCGA-DX-A3UB 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A3UC                      TCGA-DX-A3UD 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A3UE                      TCGA-DX-A3UF 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A48J                      TCGA-DX-A48K 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A48L                      TCGA-DX-A48N 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A48O                      TCGA-DX-A48P 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A48R                      TCGA-DX-A48U 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A48V                      TCGA-DX-A6B9 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A6BA                      TCGA-DX-A6BB 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A6BE                      TCGA-DX-A6BF 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A6BG                      TCGA-DX-A6BH 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A6BK                      TCGA-FX-A2QS 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-FX-A3NJ                      TCGA-FX-A3RE 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-FX-A48G                      TCGA-HB-A2OT 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-HB-A3YV                      TCGA-HB-A43Z 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-HB-A5W3                      TCGA-IE-A4EH 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-IE-A4EI                      TCGA-IE-A4EJ 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-IE-A4EK                      TCGA-IF-A4AJ 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-IF-A4AK                      TCGA-IS-A3K6 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-IS-A3K7                      TCGA-IS-A3K8 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-IS-A3KA                      TCGA-IW-A3M4 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-IW-A3M5                      TCGA-IW-A3M6 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-JV-A5VE                      TCGA-JV-A5VF 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-KF-A41W                      TCGA-LI-A67I 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-MO-A47R                      TCGA-PC-A5DK 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A1KU                      TCGA-DX-A1KW 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A1KX                      TCGA-DX-A1KY 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A1KZ                      TCGA-DX-A1L0 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A1L1                      TCGA-DX-A1L2 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A1L3                      TCGA-DX-A1L4 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A23R                      TCGA-DX-A23T 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A23U                      TCGA-DX-A23V 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A23Y                      TCGA-DX-A23Z 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A240                      TCGA-DX-A2IZ 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A2J0                      TCGA-DX-A2J1 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A2J4                      TCGA-DX-A3LS 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A3LT                      TCGA-DX-A3LU 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A3LW                      TCGA-DX-A3LY 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A3M1                      TCGA-DX-A3U5 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A3U6                      TCGA-DX-A3U7 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A3U8                      TCGA-DX-A3U9 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A3UA                      TCGA-DX-A3UB 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A3UC                      TCGA-DX-A3UD 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A3UE                      TCGA-DX-A3UF 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A48J                      TCGA-DX-A48K 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A48L                      TCGA-DX-A48N 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A48O                      TCGA-DX-A48P 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A48R                      TCGA-DX-A48U 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A48V                      TCGA-DX-A6B9 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A6BA                      TCGA-DX-A6BB 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A6BE                      TCGA-DX-A6BF 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A6BG                      TCGA-DX-A6BH 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A6BK                      TCGA-FX-A2QS 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-FX-A3NJ                      TCGA-FX-A3RE 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-FX-A48G                      TCGA-HB-A2OT 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-HB-A3YV                      TCGA-HB-A43Z 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-HB-A5W3                      TCGA-IE-A4EH 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-IE-A4EI                      TCGA-IE-A4EJ 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-IE-A4EK                      TCGA-IF-A4AJ 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-IF-A4AK                      TCGA-IS-A3K6 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-IS-A3K7                      TCGA-IS-A3K8 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-IS-A3KA                      TCGA-IW-A3M4 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-IW-A3M5                      TCGA-IW-A3M6 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-JV-A5VE                      TCGA-JV-A5VF 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-KF-A41W                      TCGA-LI-A67I 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-MO-A47R                      TCGA-PC-A5DK 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A1KU                      TCGA-DX-A1KW 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A1KX                      TCGA-DX-A1KY 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A1KZ                      TCGA-DX-A1L0 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A1L1                      TCGA-DX-A1L2 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A1L3                      TCGA-DX-A1L4 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A23R                      TCGA-DX-A23T 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A23U                      TCGA-DX-A23V 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A23Y                      TCGA-DX-A23Z 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A240                      TCGA-DX-A2IZ 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A2J0                      TCGA-DX-A2J1 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A2J4                      TCGA-DX-A3LS 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A3LT                      TCGA-DX-A3LU 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A3LW                      TCGA-DX-A3LY 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A3M1                      TCGA-DX-A3U5 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A3U6                      TCGA-DX-A3U7 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A3U8                      TCGA-DX-A3U9 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A3UA                      TCGA-DX-A3UB 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A3UC                      TCGA-DX-A3UD 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A3UE                      TCGA-DX-A3UF 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A48J                      TCGA-DX-A48K 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A48L                      TCGA-DX-A48N 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A48O                      TCGA-DX-A48P 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A48R                      TCGA-DX-A48U 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A48V                      TCGA-DX-A6B9 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A6BA                      TCGA-DX-A6BB 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A6BE                      TCGA-DX-A6BF 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-DX-A6BG                      TCGA-DX-A6BH 
"DEL PEAK 18(10Q23.31) WILD-TYPE" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-DX-A6BK                      TCGA-FX-A2QS 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-FX-A3NJ                      TCGA-FX-A3RE 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-FX-A48G                      TCGA-HB-A2OT 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-HB-A3YV                      TCGA-HB-A43Z 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-HB-A5W3                      TCGA-IE-A4EH 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-IE-A4EI                      TCGA-IE-A4EJ 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-IE-A4EK                      TCGA-IF-A4AJ 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-IF-A4AK                      TCGA-IS-A3K6 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-IS-A3K7                      TCGA-IS-A3K8 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-IS-A3KA                      TCGA-IW-A3M4 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-IW-A3M5                      TCGA-IW-A3M6 
"DEL PEAK 18(10Q23.31) WILD-TYPE"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-JV-A5VE                      TCGA-JV-A5VF 
  "DEL PEAK 18(10Q23.31) MUTATED"   "DEL PEAK 18(10Q23.31) MUTATED" 
                     TCGA-KF-A41W                      TCGA-LI-A67I 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
                     TCGA-MO-A47R                      TCGA-PC-A5DK 
  "DEL PEAK 18(10Q23.31) MUTATED" "DEL PEAK 18(10Q23.31) WILD-TYPE" 
[1] "hr=" "1.6"
D35V2, continuous
D35V3, binary
                                 cls
clus                               0  1
  DEL PEAK 18(10Q23.31) MUTATED   29 15
  DEL PEAK 18(10Q23.31) WILD-TYPE 11 27
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 18(10Q23.31) MUTATED     29   15
  DEL PEAK 18(10Q23.31) WILD-TYPE   11   27
        clus
vv       DEL PEAK 18(10Q23.31) MUTATED DEL PEAK 18(10Q23.31) WILD-TYPE
  FEMALE                            29                              11
  MALE                              15                              27

Clustering(36) Variable = DEL PEAK 19(11P15.5) MUTATION ANALYSIS
D36V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 19(11P15.5) MUTATED   22 12
  DEL PEAK 19(11P15.5) WILD-TYPE 36 12
  DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE 
                            34                             48 
  DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE 
                            12                             12 
$`DEL PEAK 19(11P15.5) MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L2 TCGA-DX-A23Y 
       14.04         2.04        27.19        24.49        42.44         6.28 
TCGA-DX-A2J0 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 
        9.70         9.01        23.08       108.10        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U7 TCGA-DX-A3U9 TCGA-DX-A3UD TCGA-DX-A3UE TCGA-DX-A3UF 
       15.02        42.77        14.99        28.80        34.88        64.14 
TCGA-DX-A48L TCGA-DX-A48N TCGA-DX-A48O TCGA-DX-A48P TCGA-FX-A3RE TCGA-FX-A48G 
       24.26        12.26        27.22        14.96         0.07         0.07 
TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EI TCGA-IF-A4AJ 
       26.89         4.54         4.14        12.62         8.94        25.22 
TCGA-IF-A4AK TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VF 
       31.76         5.88        22.62         1.05 

$`DEL PEAK 19(11P15.5) WILD-TYPE`
TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R 
       12.85        18.51        46.68        31.56        29.85        74.66 
TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ 
        5.23        76.37        66.87        27.78        60.30         8.55 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LU TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-DX-A3UA 
       53.26        43.04        70.49        17.75         4.50        10.68 
TCGA-DX-A3UB TCGA-DX-A3UC TCGA-DX-A48J TCGA-DX-A48K TCGA-DX-A48R TCGA-DX-A48U 
       44.45        39.35         9.73        19.30        26.47        72.72 
TCGA-DX-A48V TCGA-DX-A6B9 TCGA-DX-A6BA TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BF 
       25.08        11.47        54.87        10.78        16.27         2.07 
TCGA-DX-A6BG TCGA-DX-A6BH TCGA-DX-A6BK TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-IE-A4EH 
        7.33         1.68        16.18         0.46         0.10        21.37 
TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA 
        3.22         1.38        28.21       143.41       116.88        13.58 
TCGA-IW-A3M4 TCGA-JV-A5VE TCGA-KF-A41W TCGA-LI-A67I TCGA-MO-A47R TCGA-PC-A5DK 
       73.28         6.25        11.70         5.23         0.10        75.48 

  DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE 
                          0.07                           0.10 
  DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE 
                        108.10                         143.41 
  DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE 
                        16.060                         18.905 
[1] "0.1 - 108.1 (16.1)" "0.1 - 143.4 (18.9)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 19(11P15.5) MUTATED"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 19(11P15.5) MUTATED" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 19(11P15.5) MUTATED" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 19(11P15.5) WILD-TYPE"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 19(11P15.5) MUTATED" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 19(11P15.5) MUTATED" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 19(11P15.5) WILD-TYPE"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 19(11P15.5) MUTATED" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 19(11P15.5) MUTATED"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 19(11P15.5) MUTATED"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 19(11P15.5) WILD-TYPE"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 19(11P15.5) WILD-TYPE"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 19(11P15.5) WILD-TYPE"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
  "DEL PEAK 19(11P15.5) MUTATED"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "DEL PEAK 19(11P15.5) MUTATED"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK 19(11P15.5) MUTATED"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 19(11P15.5) WILD-TYPE"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 19(11P15.5) MUTATED"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 19(11P15.5) MUTATED"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 19(11P15.5) MUTATED" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 19(11P15.5) MUTATED" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 19(11P15.5) WILD-TYPE"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 19(11P15.5) MUTATED" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 19(11P15.5) MUTATED"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 19(11P15.5) WILD-TYPE"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 19(11P15.5) MUTATED"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 19(11P15.5) MUTATED" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 19(11P15.5) MUTATED" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 19(11P15.5) WILD-TYPE"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 19(11P15.5) MUTATED" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 19(11P15.5) MUTATED" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 19(11P15.5) WILD-TYPE"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 19(11P15.5) MUTATED" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 19(11P15.5) MUTATED"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 19(11P15.5) MUTATED"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 19(11P15.5) WILD-TYPE"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 19(11P15.5) WILD-TYPE"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 19(11P15.5) WILD-TYPE"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
  "DEL PEAK 19(11P15.5) MUTATED"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "DEL PEAK 19(11P15.5) MUTATED"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK 19(11P15.5) MUTATED"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 19(11P15.5) WILD-TYPE"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 19(11P15.5) MUTATED"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 19(11P15.5) MUTATED"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 19(11P15.5) MUTATED" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 19(11P15.5) MUTATED" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 19(11P15.5) WILD-TYPE"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 19(11P15.5) MUTATED" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 19(11P15.5) MUTATED"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 19(11P15.5) WILD-TYPE"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 19(11P15.5) MUTATED"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 19(11P15.5) MUTATED" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 19(11P15.5) MUTATED" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 19(11P15.5) WILD-TYPE"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 19(11P15.5) MUTATED" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 19(11P15.5) MUTATED" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 19(11P15.5) WILD-TYPE"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 19(11P15.5) MUTATED" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 19(11P15.5) MUTATED"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 19(11P15.5) MUTATED"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 19(11P15.5) WILD-TYPE"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 19(11P15.5) WILD-TYPE"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 19(11P15.5) WILD-TYPE"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
  "DEL PEAK 19(11P15.5) MUTATED"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "DEL PEAK 19(11P15.5) MUTATED"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK 19(11P15.5) MUTATED"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 19(11P15.5) WILD-TYPE"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 19(11P15.5) MUTATED"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 19(11P15.5) MUTATED"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 19(11P15.5) MUTATED" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 19(11P15.5) MUTATED" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 19(11P15.5) WILD-TYPE"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 19(11P15.5) MUTATED" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 19(11P15.5) MUTATED"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 19(11P15.5) WILD-TYPE"   "DEL PEAK 19(11P15.5) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 19(11P15.5) WILD-TYPE" "DEL PEAK 19(11P15.5) WILD-TYPE" 
[1] "hr=" "1.8"
D36V2, continuous
D36V3, binary
                                cls
clus                              0  1
  DEL PEAK 19(11P15.5) MUTATED   17 17
  DEL PEAK 19(11P15.5) WILD-TYPE 23 25
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 19(11P15.5) MUTATED     17   17
  DEL PEAK 19(11P15.5) WILD-TYPE   23   25
        clus
vv       DEL PEAK 19(11P15.5) MUTATED DEL PEAK 19(11P15.5) WILD-TYPE
  FEMALE                           17                             23
  MALE                             17                             25

Clustering(37) Variable = DEL PEAK 20(11Q24.3) MUTATION ANALYSIS
D37V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 20(11Q24.3) MUTATED   25 12
  DEL PEAK 20(11Q24.3) WILD-TYPE 33 12
  DEL PEAK 20(11Q24.3) MUTATED DEL PEAK 20(11Q24.3) WILD-TYPE 
                            37                             45 
  DEL PEAK 20(11Q24.3) MUTATED DEL PEAK 20(11Q24.3) WILD-TYPE 
                            12                             12 
$`DEL PEAK 20(11Q24.3) MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L2 
        2.04        27.19        12.85        24.49        18.51        42.44 
TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23Y TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A3LY 
       74.66         5.23         6.28         9.70        53.26        17.10 
TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U7 TCGA-DX-A3U9 TCGA-DX-A3UD TCGA-DX-A48K 
       20.02        15.02        42.77        14.99        28.80        19.30 
TCGA-DX-A48N TCGA-DX-A48O TCGA-DX-A48R TCGA-DX-A48U TCGA-DX-A6BA TCGA-DX-A6BF 
       12.26        27.22        26.47        72.72        54.87         2.07 
TCGA-DX-A6BK TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EJ TCGA-IF-A4AK 
       16.18        26.89         4.54        12.62         3.22        31.76 
TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VF TCGA-KF-A41W TCGA-LI-A67I 
       13.58         5.88        22.62         1.05        11.70         5.23 
TCGA-MO-A47R 
        0.10 

$`DEL PEAK 20(11Q24.3) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23U TCGA-DX-A23V 
       14.04        46.68        31.56        29.85        76.37        66.87 
TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT 
       27.78        60.30         8.55        43.04         9.01        23.08 
TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-DX-A3UA TCGA-DX-A3UB 
       70.49       108.10        17.75         4.50        10.68        44.45 
TCGA-DX-A3UC TCGA-DX-A3UE TCGA-DX-A3UF TCGA-DX-A48J TCGA-DX-A48L TCGA-DX-A48P 
       39.35        34.88        64.14         9.73        24.26        14.96 
TCGA-DX-A48V TCGA-DX-A6B9 TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BG TCGA-DX-A6BH 
       25.08        11.47        10.78        16.27         7.33         1.68 
TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A43Z TCGA-IE-A4EH 
        0.46         0.10         0.07         0.07         4.14        21.37 
TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 
        8.94         1.38        25.22        28.21       143.41       116.88 
TCGA-IW-A3M4 TCGA-JV-A5VE TCGA-PC-A5DK 
       73.28         6.25        75.48 

  DEL PEAK 20(11Q24.3) MUTATED DEL PEAK 20(11Q24.3) WILD-TYPE 
                          0.10                           0.07 
  DEL PEAK 20(11Q24.3) MUTATED DEL PEAK 20(11Q24.3) WILD-TYPE 
                         74.66                         143.41 
  DEL PEAK 20(11Q24.3) MUTATED DEL PEAK 20(11Q24.3) WILD-TYPE 
                         16.18                          23.08 
[1] "0.1 - 74.7 (16.2)"  "0.1 - 143.4 (23.1)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 20(11Q24.3) WILD-TYPE" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 20(11Q24.3) WILD-TYPE"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 20(11Q24.3) MUTATED"   "DEL PEAK 20(11Q24.3) MUTATED" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
  "DEL PEAK 20(11Q24.3) MUTATED" "DEL PEAK 20(11Q24.3) WILD-TYPE" 
[1] "hr=" "1.6"
D37V2, continuous
D37V3, binary
                                cls
clus                              0  1
  DEL PEAK 20(11Q24.3) MUTATED   18 19
  DEL PEAK 20(11Q24.3) WILD-TYPE 22 23
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 20(11Q24.3) MUTATED     18   19
  DEL PEAK 20(11Q24.3) WILD-TYPE   22   23
        clus
vv       DEL PEAK 20(11Q24.3) MUTATED DEL PEAK 20(11Q24.3) WILD-TYPE
  FEMALE                           18                             22
  MALE                             19                             23

Clustering(38) Variable = DEL PEAK 21(12P13.1) MUTATION ANALYSIS
D38V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 21(12P13.1) MUTATED   14  7
  DEL PEAK 21(12P13.1) WILD-TYPE 44 17
  DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE 
                            21                             61 
  DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE 
                             7                             17 
$`DEL PEAK 21(12P13.1) MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A23R TCGA-DX-A23Y 
        2.04        27.19        18.51        46.68        74.66         6.28 
TCGA-DX-A2J0 TCGA-DX-A3LT TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3U5 TCGA-DX-A3U7 
        9.70        23.08       108.10        17.10        15.02        42.77 
TCGA-DX-A3U9 TCGA-DX-A3UD TCGA-DX-A48N TCGA-DX-A48V TCGA-DX-A6BK TCGA-FX-A3NJ 
       14.99        28.80        12.26        25.08        16.18         0.10 
TCGA-IS-A3K6 TCGA-JV-A5VF TCGA-KF-A41W 
       28.21         1.05        11.70 

$`DEL PEAK 21(12P13.1) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 
       14.04        12.85        24.49        42.44        31.56        29.85 
TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ 
        5.23        76.37        66.87        27.78        60.30         8.55 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3M1 TCGA-DX-A3U6 
       53.26        43.04         9.01        70.49        20.02        17.75 
TCGA-DX-A3U8 TCGA-DX-A3UA TCGA-DX-A3UB TCGA-DX-A3UC TCGA-DX-A3UE TCGA-DX-A3UF 
        4.50        10.68        44.45        39.35        34.88        64.14 
TCGA-DX-A48J TCGA-DX-A48K TCGA-DX-A48L TCGA-DX-A48O TCGA-DX-A48P TCGA-DX-A48R 
        9.73        19.30        24.26        27.22        14.96        26.47 
TCGA-DX-A48U TCGA-DX-A6B9 TCGA-DX-A6BA TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BF 
       72.72        11.47        54.87        10.78        16.27         2.07 
TCGA-DX-A6BG TCGA-DX-A6BH TCGA-FX-A2QS TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT 
        7.33         1.68         0.46         0.07         0.07        26.89 
TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ 
        4.54         4.14        12.62        21.37         8.94         3.22 
TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA 
        1.38        25.22        31.76       143.41       116.88        13.58 
TCGA-IW-A3M4 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-LI-A67I TCGA-MO-A47R 
       73.28         5.88        22.62         6.25         5.23         0.10 
TCGA-PC-A5DK 
       75.48 

  DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE 
                          0.10                           0.07 
  DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE 
                        108.10                         143.41 
  DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE 
                          17.1                           19.3 
[1] "0.1 - 108.1 (17.1)" "0.1 - 143.4 (19.3)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 21(12P13.1) MUTATED"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 21(12P13.1) MUTATED"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 21(12P13.1) MUTATED"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 21(12P13.1) WILD-TYPE"   "DEL PEAK 21(12P13.1) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 21(12P13.1) MUTATED" "DEL PEAK 21(12P13.1) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 21(12P13.1) WILD-TYPE" "DEL PEAK 21(12P13.1) WILD-TYPE" 
[1] "hr=" "1.2"
D38V2, continuous
D38V3, binary
                                cls
clus                              0  1
  DEL PEAK 21(12P13.1) MUTATED    6 15
  DEL PEAK 21(12P13.1) WILD-TYPE 34 27
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 21(12P13.1) MUTATED      6   15
  DEL PEAK 21(12P13.1) WILD-TYPE   34   27
        clus
vv       DEL PEAK 21(12P13.1) MUTATED DEL PEAK 21(12P13.1) WILD-TYPE
  FEMALE                            6                             34
  MALE                             15                             27

Clustering(39) Variable = DEL PEAK 22(12Q12) MUTATION ANALYSIS
D39V1, survival
                              sevent
clus2                           0  1
  DEL PEAK 22(12Q12) MUTATED   12  5
  DEL PEAK 22(12Q12) WILD-TYPE 46 19
  DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE 
                          17                           65 
  DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE 
                           5                           19 
$`DEL PEAK 22(12Q12) MUTATED`
TCGA-DX-A1KW TCGA-DX-A1L1 TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A2IZ TCGA-DX-A2J0 
        2.04        46.68        74.66         6.28         8.55         9.70 
TCGA-DX-A3LY TCGA-DX-A3UC TCGA-DX-A3UF TCGA-DX-A48R TCGA-DX-A6BF TCGA-FX-A3NJ 
       17.10        39.35        64.14        26.47         2.07         0.10 
TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IF-A4AJ TCGA-JV-A5VF TCGA-KF-A41W 
       12.62        21.37        25.22         1.05        11.70 

$`DEL PEAK 22(12Q12) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L2 
       14.04        27.19        12.85        24.49        18.51        42.44 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z 
       31.56        29.85         5.23        76.37        66.87        27.78 
TCGA-DX-A240 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU 
       60.30        53.26        43.04         9.01        23.08        70.49 
TCGA-DX-A3LW TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 
      108.10        20.02        15.02        17.75        42.77         4.50 
TCGA-DX-A3U9 TCGA-DX-A3UA TCGA-DX-A3UB TCGA-DX-A3UD TCGA-DX-A3UE TCGA-DX-A48J 
       14.99        10.68        44.45        28.80        34.88         9.73 
TCGA-DX-A48K TCGA-DX-A48L TCGA-DX-A48N TCGA-DX-A48O TCGA-DX-A48P TCGA-DX-A48U 
       19.30        24.26        12.26        27.22        14.96        72.72 
TCGA-DX-A48V TCGA-DX-A6B9 TCGA-DX-A6BA TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BG 
       25.08        11.47        54.87        10.78        16.27         7.33 
TCGA-DX-A6BH TCGA-DX-A6BK TCGA-FX-A2QS TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT 
        1.68        16.18         0.46         0.07         0.07        26.89 
TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AK 
        4.54         4.14         8.94         3.22         1.38        31.76 
TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M5 
       28.21       143.41       116.88        13.58        73.28         5.88 
TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-LI-A67I TCGA-MO-A47R TCGA-PC-A5DK 
       22.62         6.25         5.23         0.10        75.48 

  DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE 
                        0.10                         0.07 
  DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE 
                       74.66                       143.41 
  DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE 
                       12.62                        19.30 
[1] "0.1 - 74.7 (12.6)"  "0.1 - 143.4 (19.3)"
                  TCGA-DX-A1KU                   TCGA-DX-A1KW 
"DEL PEAK 22(12Q12) WILD-TYPE"   "DEL PEAK 22(12Q12) MUTATED" 
                  TCGA-DX-A1KX                   TCGA-DX-A1KY 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A1KZ                   TCGA-DX-A1L0 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A1L1                   TCGA-DX-A1L2 
  "DEL PEAK 22(12Q12) MUTATED" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A1L3                   TCGA-DX-A1L4 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A23R                   TCGA-DX-A23T 
  "DEL PEAK 22(12Q12) MUTATED" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A23U                   TCGA-DX-A23V 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A23Y                   TCGA-DX-A23Z 
  "DEL PEAK 22(12Q12) MUTATED" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A240                   TCGA-DX-A2IZ 
"DEL PEAK 22(12Q12) WILD-TYPE"   "DEL PEAK 22(12Q12) MUTATED" 
                  TCGA-DX-A2J0                   TCGA-DX-A2J1 
  "DEL PEAK 22(12Q12) MUTATED" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A2J4                   TCGA-DX-A3LS 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A3LT                   TCGA-DX-A3LU 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A3LW                   TCGA-DX-A3LY 
"DEL PEAK 22(12Q12) WILD-TYPE"   "DEL PEAK 22(12Q12) MUTATED" 
                  TCGA-DX-A3M1                   TCGA-DX-A3U5 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A3U6                   TCGA-DX-A3U7 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A3U8                   TCGA-DX-A3U9 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A3UA                   TCGA-DX-A3UB 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A3UC                   TCGA-DX-A3UD 
  "DEL PEAK 22(12Q12) MUTATED" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A3UE                   TCGA-DX-A3UF 
"DEL PEAK 22(12Q12) WILD-TYPE"   "DEL PEAK 22(12Q12) MUTATED" 
                  TCGA-DX-A48J                   TCGA-DX-A48K 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A48L                   TCGA-DX-A48N 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A48O                   TCGA-DX-A48P 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A48R                   TCGA-DX-A48U 
  "DEL PEAK 22(12Q12) MUTATED" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A48V                   TCGA-DX-A6B9 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A6BA                   TCGA-DX-A6BB 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A6BE                   TCGA-DX-A6BF 
"DEL PEAK 22(12Q12) WILD-TYPE"   "DEL PEAK 22(12Q12) MUTATED" 
                  TCGA-DX-A6BG                   TCGA-DX-A6BH 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A6BK                   TCGA-FX-A2QS 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-FX-A3NJ                   TCGA-FX-A3RE 
  "DEL PEAK 22(12Q12) MUTATED" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-FX-A48G                   TCGA-HB-A2OT 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-HB-A3YV                   TCGA-HB-A43Z 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-HB-A5W3                   TCGA-IE-A4EH 
  "DEL PEAK 22(12Q12) MUTATED"   "DEL PEAK 22(12Q12) MUTATED" 
                  TCGA-IE-A4EI                   TCGA-IE-A4EJ 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-IE-A4EK                   TCGA-IF-A4AJ 
"DEL PEAK 22(12Q12) WILD-TYPE"   "DEL PEAK 22(12Q12) MUTATED" 
                  TCGA-IF-A4AK                   TCGA-IS-A3K6 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-IS-A3K7                   TCGA-IS-A3K8 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-IS-A3KA                   TCGA-IW-A3M4 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-IW-A3M6 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-JV-A5VE                   TCGA-JV-A5VF 
"DEL PEAK 22(12Q12) WILD-TYPE"   "DEL PEAK 22(12Q12) MUTATED" 
                  TCGA-KF-A41W                   TCGA-LI-A67I 
  "DEL PEAK 22(12Q12) MUTATED" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-MO-A47R                   TCGA-PC-A5DK 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A1KU                   TCGA-DX-A1KW 
"DEL PEAK 22(12Q12) WILD-TYPE"   "DEL PEAK 22(12Q12) MUTATED" 
                  TCGA-DX-A1KX                   TCGA-DX-A1KY 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A1KZ                   TCGA-DX-A1L0 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A1L1                   TCGA-DX-A1L2 
  "DEL PEAK 22(12Q12) MUTATED" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A1L3                   TCGA-DX-A1L4 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A23R                   TCGA-DX-A23T 
  "DEL PEAK 22(12Q12) MUTATED" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A23U                   TCGA-DX-A23V 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A23Y                   TCGA-DX-A23Z 
  "DEL PEAK 22(12Q12) MUTATED" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A240                   TCGA-DX-A2IZ 
"DEL PEAK 22(12Q12) WILD-TYPE"   "DEL PEAK 22(12Q12) MUTATED" 
                  TCGA-DX-A2J0                   TCGA-DX-A2J1 
  "DEL PEAK 22(12Q12) MUTATED" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A2J4                   TCGA-DX-A3LS 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A3LT                   TCGA-DX-A3LU 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A3LW                   TCGA-DX-A3LY 
"DEL PEAK 22(12Q12) WILD-TYPE"   "DEL PEAK 22(12Q12) MUTATED" 
                  TCGA-DX-A3M1                   TCGA-DX-A3U5 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A3U6                   TCGA-DX-A3U7 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A3U8                   TCGA-DX-A3U9 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A3UA                   TCGA-DX-A3UB 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A3UC                   TCGA-DX-A3UD 
  "DEL PEAK 22(12Q12) MUTATED" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A3UE                   TCGA-DX-A3UF 
"DEL PEAK 22(12Q12) WILD-TYPE"   "DEL PEAK 22(12Q12) MUTATED" 
                  TCGA-DX-A48J                   TCGA-DX-A48K 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A48L                   TCGA-DX-A48N 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A48O                   TCGA-DX-A48P 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A48R                   TCGA-DX-A48U 
  "DEL PEAK 22(12Q12) MUTATED" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A48V                   TCGA-DX-A6B9 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A6BA                   TCGA-DX-A6BB 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A6BE                   TCGA-DX-A6BF 
"DEL PEAK 22(12Q12) WILD-TYPE"   "DEL PEAK 22(12Q12) MUTATED" 
                  TCGA-DX-A6BG                   TCGA-DX-A6BH 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A6BK                   TCGA-FX-A2QS 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-FX-A3NJ                   TCGA-FX-A3RE 
  "DEL PEAK 22(12Q12) MUTATED" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-FX-A48G                   TCGA-HB-A2OT 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-HB-A3YV                   TCGA-HB-A43Z 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-HB-A5W3                   TCGA-IE-A4EH 
  "DEL PEAK 22(12Q12) MUTATED"   "DEL PEAK 22(12Q12) MUTATED" 
                  TCGA-IE-A4EI                   TCGA-IE-A4EJ 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-IE-A4EK                   TCGA-IF-A4AJ 
"DEL PEAK 22(12Q12) WILD-TYPE"   "DEL PEAK 22(12Q12) MUTATED" 
                  TCGA-IF-A4AK                   TCGA-IS-A3K6 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-IS-A3K7                   TCGA-IS-A3K8 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-IS-A3KA                   TCGA-IW-A3M4 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-IW-A3M6 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-JV-A5VE                   TCGA-JV-A5VF 
"DEL PEAK 22(12Q12) WILD-TYPE"   "DEL PEAK 22(12Q12) MUTATED" 
                  TCGA-KF-A41W                   TCGA-LI-A67I 
  "DEL PEAK 22(12Q12) MUTATED" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-MO-A47R                   TCGA-PC-A5DK 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A1KU                   TCGA-DX-A1KW 
"DEL PEAK 22(12Q12) WILD-TYPE"   "DEL PEAK 22(12Q12) MUTATED" 
                  TCGA-DX-A1KX                   TCGA-DX-A1KY 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A1KZ                   TCGA-DX-A1L0 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A1L1                   TCGA-DX-A1L2 
  "DEL PEAK 22(12Q12) MUTATED" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A1L3                   TCGA-DX-A1L4 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A23R                   TCGA-DX-A23T 
  "DEL PEAK 22(12Q12) MUTATED" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A23U                   TCGA-DX-A23V 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A23Y                   TCGA-DX-A23Z 
  "DEL PEAK 22(12Q12) MUTATED" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A240                   TCGA-DX-A2IZ 
"DEL PEAK 22(12Q12) WILD-TYPE"   "DEL PEAK 22(12Q12) MUTATED" 
                  TCGA-DX-A2J0                   TCGA-DX-A2J1 
  "DEL PEAK 22(12Q12) MUTATED" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A2J4                   TCGA-DX-A3LS 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A3LT                   TCGA-DX-A3LU 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A3LW                   TCGA-DX-A3LY 
"DEL PEAK 22(12Q12) WILD-TYPE"   "DEL PEAK 22(12Q12) MUTATED" 
                  TCGA-DX-A3M1                   TCGA-DX-A3U5 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A3U6                   TCGA-DX-A3U7 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A3U8                   TCGA-DX-A3U9 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A3UA                   TCGA-DX-A3UB 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A3UC                   TCGA-DX-A3UD 
  "DEL PEAK 22(12Q12) MUTATED" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A3UE                   TCGA-DX-A3UF 
"DEL PEAK 22(12Q12) WILD-TYPE"   "DEL PEAK 22(12Q12) MUTATED" 
                  TCGA-DX-A48J                   TCGA-DX-A48K 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A48L                   TCGA-DX-A48N 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A48O                   TCGA-DX-A48P 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A48R                   TCGA-DX-A48U 
  "DEL PEAK 22(12Q12) MUTATED" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A48V                   TCGA-DX-A6B9 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A6BA                   TCGA-DX-A6BB 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A6BE                   TCGA-DX-A6BF 
"DEL PEAK 22(12Q12) WILD-TYPE"   "DEL PEAK 22(12Q12) MUTATED" 
                  TCGA-DX-A6BG                   TCGA-DX-A6BH 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-DX-A6BK                   TCGA-FX-A2QS 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-FX-A3NJ                   TCGA-FX-A3RE 
  "DEL PEAK 22(12Q12) MUTATED" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-FX-A48G                   TCGA-HB-A2OT 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-HB-A3YV                   TCGA-HB-A43Z 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-HB-A5W3                   TCGA-IE-A4EH 
  "DEL PEAK 22(12Q12) MUTATED"   "DEL PEAK 22(12Q12) MUTATED" 
                  TCGA-IE-A4EI                   TCGA-IE-A4EJ 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-IE-A4EK                   TCGA-IF-A4AJ 
"DEL PEAK 22(12Q12) WILD-TYPE"   "DEL PEAK 22(12Q12) MUTATED" 
                  TCGA-IF-A4AK                   TCGA-IS-A3K6 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-IS-A3K7                   TCGA-IS-A3K8 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-IS-A3KA                   TCGA-IW-A3M4 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-IW-A3M5                   TCGA-IW-A3M6 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-JV-A5VE                   TCGA-JV-A5VF 
"DEL PEAK 22(12Q12) WILD-TYPE"   "DEL PEAK 22(12Q12) MUTATED" 
                  TCGA-KF-A41W                   TCGA-LI-A67I 
  "DEL PEAK 22(12Q12) MUTATED" "DEL PEAK 22(12Q12) WILD-TYPE" 
                  TCGA-MO-A47R                   TCGA-PC-A5DK 
"DEL PEAK 22(12Q12) WILD-TYPE" "DEL PEAK 22(12Q12) WILD-TYPE" 
[1] "hr=" "1.3"
D39V2, continuous
D39V3, binary
                              cls
clus                            0  1
  DEL PEAK 22(12Q12) MUTATED    8  9
  DEL PEAK 22(12Q12) WILD-TYPE 32 33
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  DEL PEAK 22(12Q12) MUTATED      8    9
  DEL PEAK 22(12Q12) WILD-TYPE   32   33
        clus
vv       DEL PEAK 22(12Q12) MUTATED DEL PEAK 22(12Q12) WILD-TYPE
  FEMALE                          8                           32
  MALE                            9                           33

Clustering(40) Variable = DEL PEAK 23(13Q14.2) MUTATION ANALYSIS
D40V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 23(13Q14.2) MUTATED   38 17
  DEL PEAK 23(13Q14.2) WILD-TYPE 20  7
  DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE 
                            55                             27 
  DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE 
                            17                              7 
$`DEL PEAK 23(13Q14.2) MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 
       14.04        27.19        12.85        24.49        18.51        46.68 
TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A2J0 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LY 
       74.66         6.28         9.70         9.01        23.08        17.10 
TCGA-DX-A3M1 TCGA-DX-A3U7 TCGA-DX-A3U9 TCGA-DX-A3UC TCGA-DX-A3UD TCGA-DX-A3UE 
       20.02        42.77        14.99        39.35        28.80        34.88 
TCGA-DX-A3UF TCGA-DX-A48J TCGA-DX-A48K TCGA-DX-A48L TCGA-DX-A48O TCGA-DX-A48P 
       64.14         9.73        19.30        24.26        27.22        14.96 
TCGA-DX-A48R TCGA-DX-A48U TCGA-DX-A48V TCGA-DX-A6BA TCGA-DX-A6BB TCGA-DX-A6BF 
       26.47        72.72        25.08        54.87        10.78         2.07 
TCGA-DX-A6BK TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT 
       16.18         0.46         0.10         0.07         0.07        26.89 
TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ 
        4.54         4.14        12.62        21.37         8.94         3.22 
TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3KA 
        1.38        25.22        31.76        28.21       143.41        13.58 
TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W TCGA-MO-A47R 
       73.28        22.62         6.25         1.05        11.70         0.10 
TCGA-PC-A5DK 
       75.48 

$`DEL PEAK 23(13Q14.2) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U 
        2.04        42.44        31.56        29.85         5.23        76.37 
TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J1 TCGA-DX-A2J4 
       66.87        27.78        60.30         8.55        53.26        43.04 
TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-DX-A3UA 
       70.49       108.10        15.02        17.75         4.50        10.68 
TCGA-DX-A3UB TCGA-DX-A48N TCGA-DX-A6B9 TCGA-DX-A6BE TCGA-DX-A6BG TCGA-DX-A6BH 
       44.45        12.26        11.47        16.27         7.33         1.68 
TCGA-IS-A3K8 TCGA-IW-A3M5 TCGA-LI-A67I 
      116.88         5.88         5.23 

  DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE 
                          0.07                           1.68 
  DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE 
                        143.41                         116.88 
  DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE 
                         18.51                          17.75 
[1] "0.1 - 143.4 (18.5)" "1.7 - 116.9 (17.8)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 23(13Q14.2) WILD-TYPE" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 23(13Q14.2) WILD-TYPE" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 23(13Q14.2) WILD-TYPE" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 23(13Q14.2) WILD-TYPE"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 23(13Q14.2) WILD-TYPE"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 23(13Q14.2) WILD-TYPE"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 23(13Q14.2) WILD-TYPE"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"DEL PEAK 23(13Q14.2) WILD-TYPE" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 23(13Q14.2) WILD-TYPE"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 23(13Q14.2) WILD-TYPE" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 23(13Q14.2) WILD-TYPE"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 23(13Q14.2) WILD-TYPE" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 23(13Q14.2) WILD-TYPE" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 23(13Q14.2) WILD-TYPE" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 23(13Q14.2) WILD-TYPE"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 23(13Q14.2) WILD-TYPE"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 23(13Q14.2) WILD-TYPE"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 23(13Q14.2) WILD-TYPE"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"DEL PEAK 23(13Q14.2) WILD-TYPE" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 23(13Q14.2) WILD-TYPE"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 23(13Q14.2) WILD-TYPE" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 23(13Q14.2) WILD-TYPE"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 23(13Q14.2) WILD-TYPE" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 23(13Q14.2) WILD-TYPE" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 23(13Q14.2) WILD-TYPE" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 23(13Q14.2) WILD-TYPE"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 23(13Q14.2) WILD-TYPE"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 23(13Q14.2) WILD-TYPE"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 23(13Q14.2) WILD-TYPE"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"DEL PEAK 23(13Q14.2) WILD-TYPE" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 23(13Q14.2) WILD-TYPE"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 23(13Q14.2) WILD-TYPE" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 23(13Q14.2) WILD-TYPE"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 23(13Q14.2) MUTATED" "DEL PEAK 23(13Q14.2) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
  "DEL PEAK 23(13Q14.2) MUTATED"   "DEL PEAK 23(13Q14.2) MUTATED" 
[1] "hr=" "1.5"
D40V2, continuous
D40V3, binary
                                cls
clus                              0  1
  DEL PEAK 23(13Q14.2) MUTATED   31 24
  DEL PEAK 23(13Q14.2) WILD-TYPE  9 18
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 23(13Q14.2) MUTATED     31   24
  DEL PEAK 23(13Q14.2) WILD-TYPE    9   18
        clus
vv       DEL PEAK 23(13Q14.2) MUTATED DEL PEAK 23(13Q14.2) WILD-TYPE
  FEMALE                           31                              9
  MALE                             24                             18

Clustering(41) Variable = DEL PEAK 24(14Q24.1) MUTATION ANALYSIS
D41V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 24(14Q24.1) MUTATED   26  6
  DEL PEAK 24(14Q24.1) WILD-TYPE 32 18
  DEL PEAK 24(14Q24.1) MUTATED DEL PEAK 24(14Q24.1) WILD-TYPE 
                            32                             50 
  DEL PEAK 24(14Q24.1) MUTATED DEL PEAK 24(14Q24.1) WILD-TYPE 
                             6                             18 
$`DEL PEAK 24(14Q24.1) MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 
       14.04         2.04        27.19        12.85        24.49        18.51 
TCGA-DX-A1L2 TCGA-DX-A23R TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LY TCGA-DX-A3U5 
       42.44        74.66        23.08        70.49        17.10        15.02 
TCGA-DX-A3UE TCGA-DX-A48N TCGA-DX-A48O TCGA-DX-A48P TCGA-DX-A48U TCGA-FX-A2QS 
       34.88        12.26        27.22        14.96        72.72         0.46 
TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A43Z TCGA-IE-A4EH TCGA-IE-A4EJ 
        0.10         0.07         0.07         4.14        21.37         3.22 
TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VE 
       28.21       143.41       116.88        73.28        22.62         6.25 
TCGA-JV-A5VF TCGA-KF-A41W 
        1.05        11.70 

$`DEL PEAK 24(14Q24.1) WILD-TYPE`
TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V 
       46.68        31.56        29.85         5.23        76.37        66.87 
TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 
        6.28        27.78        60.30         8.55         9.70        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LW TCGA-DX-A3M1 TCGA-DX-A3U6 TCGA-DX-A3U7 
       43.04         9.01       108.10        20.02        17.75        42.77 
TCGA-DX-A3U8 TCGA-DX-A3U9 TCGA-DX-A3UA TCGA-DX-A3UB TCGA-DX-A3UC TCGA-DX-A3UD 
        4.50        14.99        10.68        44.45        39.35        28.80 
TCGA-DX-A3UF TCGA-DX-A48J TCGA-DX-A48K TCGA-DX-A48L TCGA-DX-A48R TCGA-DX-A48V 
       64.14         9.73        19.30        24.26        26.47        25.08 
TCGA-DX-A6B9 TCGA-DX-A6BA TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BF TCGA-DX-A6BG 
       11.47        54.87        10.78        16.27         2.07         7.33 
TCGA-DX-A6BH TCGA-DX-A6BK TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EI 
        1.68        16.18        26.89         4.54        12.62         8.94 
TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-LI-A67I 
        1.38        25.22        31.76        13.58         5.88         5.23 
TCGA-MO-A47R TCGA-PC-A5DK 
        0.10        75.48 

  DEL PEAK 24(14Q24.1) MUTATED DEL PEAK 24(14Q24.1) WILD-TYPE 
                          0.07                           0.10 
  DEL PEAK 24(14Q24.1) MUTATED DEL PEAK 24(14Q24.1) WILD-TYPE 
                        143.41                         108.10 
  DEL PEAK 24(14Q24.1) MUTATED DEL PEAK 24(14Q24.1) WILD-TYPE 
                        17.805                         18.525 
[1] "0.1 - 143.4 (17.8)" "0.1 - 108.1 (18.5)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 24(14Q24.1) MUTATED"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 24(14Q24.1) MUTATED"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 24(14Q24.1) MUTATED"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 24(14Q24.1) MUTATED" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 24(14Q24.1) MUTATED"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
  "DEL PEAK 24(14Q24.1) MUTATED" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK 24(14Q24.1) MUTATED"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 24(14Q24.1) MUTATED"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 24(14Q24.1) MUTATED" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 24(14Q24.1) MUTATED"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 24(14Q24.1) MUTATED"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 24(14Q24.1) MUTATED" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 24(14Q24.1) MUTATED"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 24(14Q24.1) MUTATED"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 24(14Q24.1) MUTATED"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 24(14Q24.1) MUTATED" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 24(14Q24.1) MUTATED"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
  "DEL PEAK 24(14Q24.1) MUTATED" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK 24(14Q24.1) MUTATED"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 24(14Q24.1) MUTATED"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 24(14Q24.1) MUTATED" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 24(14Q24.1) MUTATED"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 24(14Q24.1) MUTATED"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 24(14Q24.1) MUTATED" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 24(14Q24.1) MUTATED"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 24(14Q24.1) MUTATED"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 24(14Q24.1) MUTATED"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 24(14Q24.1) MUTATED" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 24(14Q24.1) MUTATED"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
  "DEL PEAK 24(14Q24.1) MUTATED" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK 24(14Q24.1) MUTATED"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 24(14Q24.1) MUTATED"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 24(14Q24.1) MUTATED" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 24(14Q24.1) MUTATED"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 24(14Q24.1) WILD-TYPE"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 24(14Q24.1) MUTATED"   "DEL PEAK 24(14Q24.1) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 24(14Q24.1) MUTATED" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 24(14Q24.1) WILD-TYPE" "DEL PEAK 24(14Q24.1) WILD-TYPE" 
[1] "hr=" "1.9"
D41V2, continuous
D41V3, binary
                                cls
clus                              0  1
  DEL PEAK 24(14Q24.1) MUTATED   19 13
  DEL PEAK 24(14Q24.1) WILD-TYPE 21 29
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 24(14Q24.1) MUTATED     19   13
  DEL PEAK 24(14Q24.1) WILD-TYPE   21   29
        clus
vv       DEL PEAK 24(14Q24.1) MUTATED DEL PEAK 24(14Q24.1) WILD-TYPE
  FEMALE                           19                             21
  MALE                             13                             29

Clustering(42) Variable = DEL PEAK 25(16Q12.1) MUTATION ANALYSIS
D42V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 25(16Q12.1) MUTATED   31 13
  DEL PEAK 25(16Q12.1) WILD-TYPE 27 11
  DEL PEAK 25(16Q12.1) MUTATED DEL PEAK 25(16Q12.1) WILD-TYPE 
                            44                             38 
  DEL PEAK 25(16Q12.1) MUTATED DEL PEAK 25(16Q12.1) WILD-TYPE 
                            13                             11 
$`DEL PEAK 25(16Q12.1) MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A2J0 
       14.04        27.19        18.51        74.66         6.28         9.70 
TCGA-DX-A3LT TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U7 TCGA-DX-A3U9 
       23.08        17.10        20.02        15.02        42.77        14.99 
TCGA-DX-A3UA TCGA-DX-A3UC TCGA-DX-A3UD TCGA-DX-A3UF TCGA-DX-A48K TCGA-DX-A48L 
       10.68        39.35        28.80        64.14        19.30        24.26 
TCGA-DX-A48O TCGA-DX-A48P TCGA-DX-A48R TCGA-DX-A48V TCGA-DX-A6BA TCGA-DX-A6BB 
       27.22        14.96        26.47        25.08        54.87        10.78 
TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z 
        0.10         0.07         0.07        26.89         4.54         4.14 
TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ 
       12.62        21.37         8.94         3.22         1.38        25.22 
TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-JV-A5VE TCGA-JV-A5VF 
       31.76        28.21        13.58        73.28         6.25         1.05 
TCGA-KF-A41W TCGA-MO-A47R 
       11.70         0.10 

$`DEL PEAK 25(16Q12.1) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 
        2.04        12.85        24.49        46.68        42.44        31.56 
TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 
       29.85         5.23        76.37        66.87        27.78        60.30 
TCGA-DX-A2IZ TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3LW 
        8.55        53.26        43.04         9.01        70.49       108.10 
TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-DX-A3UB TCGA-DX-A3UE TCGA-DX-A48J TCGA-DX-A48N 
       17.75         4.50        44.45        34.88         9.73        12.26 
TCGA-DX-A48U TCGA-DX-A6B9 TCGA-DX-A6BE TCGA-DX-A6BF TCGA-DX-A6BG TCGA-DX-A6BH 
       72.72        11.47        16.27         2.07         7.33         1.68 
TCGA-DX-A6BK TCGA-FX-A2QS TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IW-A3M5 TCGA-IW-A3M6 
       16.18         0.46       143.41       116.88         5.88        22.62 
TCGA-LI-A67I TCGA-PC-A5DK 
        5.23        75.48 

  DEL PEAK 25(16Q12.1) MUTATED DEL PEAK 25(16Q12.1) WILD-TYPE 
                          0.07                           0.46 
  DEL PEAK 25(16Q12.1) MUTATED DEL PEAK 25(16Q12.1) WILD-TYPE 
                         74.66                         143.41 
  DEL PEAK 25(16Q12.1) MUTATED DEL PEAK 25(16Q12.1) WILD-TYPE 
                        16.060                         23.555 
[1] "0.1 - 74.7 (16.1)"  "0.5 - 143.4 (23.6)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 25(16Q12.1) WILD-TYPE"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 25(16Q12.1) WILD-TYPE"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 25(16Q12.1) WILD-TYPE"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 25(16Q12.1) WILD-TYPE"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK 25(16Q12.1) WILD-TYPE"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 25(16Q12.1) WILD-TYPE"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 25(16Q12.1) WILD-TYPE"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 25(16Q12.1) WILD-TYPE"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 25(16Q12.1) WILD-TYPE"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 25(16Q12.1) WILD-TYPE"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK 25(16Q12.1) WILD-TYPE"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 25(16Q12.1) WILD-TYPE"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 25(16Q12.1) WILD-TYPE"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 25(16Q12.1) WILD-TYPE"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 25(16Q12.1) WILD-TYPE"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 25(16Q12.1) WILD-TYPE"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK 25(16Q12.1) WILD-TYPE"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 25(16Q12.1) WILD-TYPE"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 25(16Q12.1) WILD-TYPE" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 25(16Q12.1) MUTATED"   "DEL PEAK 25(16Q12.1) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
  "DEL PEAK 25(16Q12.1) MUTATED" "DEL PEAK 25(16Q12.1) WILD-TYPE" 
[1] "hr=" "1.4"
D42V2, continuous
D42V3, binary
                                cls
clus                              0  1
  DEL PEAK 25(16Q12.1) MUTATED   25 19
  DEL PEAK 25(16Q12.1) WILD-TYPE 15 23
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 25(16Q12.1) MUTATED     25   19
  DEL PEAK 25(16Q12.1) WILD-TYPE   15   23
        clus
vv       DEL PEAK 25(16Q12.1) MUTATED DEL PEAK 25(16Q12.1) WILD-TYPE
  FEMALE                           25                             15
  MALE                             19                             23

Clustering(43) Variable = DEL PEAK 26(17P13.3) MUTATION ANALYSIS
D43V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 26(17P13.3) MUTATED   15 12
  DEL PEAK 26(17P13.3) WILD-TYPE 43 12
  DEL PEAK 26(17P13.3) MUTATED DEL PEAK 26(17P13.3) WILD-TYPE 
                            27                             55 
  DEL PEAK 26(17P13.3) MUTATED DEL PEAK 26(17P13.3) WILD-TYPE 
                            12                             12 
$`DEL PEAK 26(17P13.3) MUTATED`
TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A23R TCGA-DX-A3LT TCGA-DX-A3U7 TCGA-DX-A3U9 
       12.85        24.49        74.66        23.08        42.77        14.99 
TCGA-DX-A3UA TCGA-DX-A3UE TCGA-DX-A48K TCGA-DX-A48L TCGA-DX-A48O TCGA-DX-A48R 
       10.68        34.88        19.30        24.26        27.22        26.47 
TCGA-DX-A48U TCGA-DX-A6BA TCGA-DX-A6BB TCGA-DX-A6BK TCGA-FX-A3NJ TCGA-HB-A3YV 
       72.72        54.87        10.78        16.18         0.10         4.54 
TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 
       12.62        21.37         1.38        25.22        31.76        28.21 
TCGA-IS-A3K7 TCGA-IS-A3KA TCGA-IW-A3M5 
      143.41        13.58         5.88 

$`DEL PEAK 26(17P13.3) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 
       14.04         2.04        27.19        18.51        46.68        42.44 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y 
       31.56        29.85         5.23        76.37        66.87         6.28 
TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 
       27.78        60.30         8.55         9.70        53.26        43.04 
TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 
        9.01        70.49       108.10        17.10        20.02        15.02 
TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-DX-A3UB TCGA-DX-A3UC TCGA-DX-A3UD TCGA-DX-A3UF 
       17.75         4.50        44.45        39.35        28.80        64.14 
TCGA-DX-A48J TCGA-DX-A48N TCGA-DX-A48P TCGA-DX-A48V TCGA-DX-A6B9 TCGA-DX-A6BE 
        9.73        12.26        14.96        25.08        11.47        16.27 
TCGA-DX-A6BF TCGA-DX-A6BG TCGA-DX-A6BH TCGA-FX-A2QS TCGA-FX-A3RE TCGA-FX-A48G 
        2.07         7.33         1.68         0.46         0.07         0.07 
TCGA-HB-A2OT TCGA-HB-A43Z TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IS-A3K8 TCGA-IW-A3M4 
       26.89         4.14         8.94         3.22       116.88        73.28 
TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W TCGA-LI-A67I TCGA-MO-A47R 
       22.62         6.25         1.05        11.70         5.23         0.10 
TCGA-PC-A5DK 
       75.48 

  DEL PEAK 26(17P13.3) MUTATED DEL PEAK 26(17P13.3) WILD-TYPE 
                          0.10                           0.07 
  DEL PEAK 26(17P13.3) MUTATED DEL PEAK 26(17P13.3) WILD-TYPE 
                        143.41                         116.88 
  DEL PEAK 26(17P13.3) MUTATED DEL PEAK 26(17P13.3) WILD-TYPE 
                         23.08                          16.27 
[1] "0.1 - 143.4 (23.1)" "0.1 - 116.9 (16.3)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"DEL PEAK 26(17P13.3) WILD-TYPE"   "DEL PEAK 26(17P13.3) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 26(17P13.3) WILD-TYPE"   "DEL PEAK 26(17P13.3) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 26(17P13.3) WILD-TYPE"   "DEL PEAK 26(17P13.3) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 26(17P13.3) WILD-TYPE"   "DEL PEAK 26(17P13.3) MUTATED" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK 26(17P13.3) MUTATED"   "DEL PEAK 26(17P13.3) MUTATED" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK 26(17P13.3) MUTATED"   "DEL PEAK 26(17P13.3) MUTATED" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 26(17P13.3) MUTATED"   "DEL PEAK 26(17P13.3) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "DEL PEAK 26(17P13.3) MUTATED"   "DEL PEAK 26(17P13.3) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 26(17P13.3) MUTATED"   "DEL PEAK 26(17P13.3) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"DEL PEAK 26(17P13.3) WILD-TYPE"   "DEL PEAK 26(17P13.3) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 26(17P13.3) WILD-TYPE"   "DEL PEAK 26(17P13.3) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 26(17P13.3) WILD-TYPE"   "DEL PEAK 26(17P13.3) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 26(17P13.3) WILD-TYPE"   "DEL PEAK 26(17P13.3) MUTATED" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK 26(17P13.3) MUTATED"   "DEL PEAK 26(17P13.3) MUTATED" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK 26(17P13.3) MUTATED"   "DEL PEAK 26(17P13.3) MUTATED" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 26(17P13.3) MUTATED"   "DEL PEAK 26(17P13.3) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "DEL PEAK 26(17P13.3) MUTATED"   "DEL PEAK 26(17P13.3) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 26(17P13.3) MUTATED"   "DEL PEAK 26(17P13.3) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"DEL PEAK 26(17P13.3) WILD-TYPE"   "DEL PEAK 26(17P13.3) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 26(17P13.3) WILD-TYPE"   "DEL PEAK 26(17P13.3) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 26(17P13.3) WILD-TYPE"   "DEL PEAK 26(17P13.3) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 26(17P13.3) WILD-TYPE"   "DEL PEAK 26(17P13.3) MUTATED" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK 26(17P13.3) MUTATED"   "DEL PEAK 26(17P13.3) MUTATED" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK 26(17P13.3) MUTATED"   "DEL PEAK 26(17P13.3) MUTATED" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 26(17P13.3) MUTATED"   "DEL PEAK 26(17P13.3) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "DEL PEAK 26(17P13.3) MUTATED"   "DEL PEAK 26(17P13.3) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 26(17P13.3) MUTATED"   "DEL PEAK 26(17P13.3) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 26(17P13.3) MUTATED" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 26(17P13.3) WILD-TYPE" "DEL PEAK 26(17P13.3) WILD-TYPE" 
[1] "hr=" "1.8"
D43V2, continuous
D43V3, binary
                                cls
clus                              0  1
  DEL PEAK 26(17P13.3) MUTATED   14 13
  DEL PEAK 26(17P13.3) WILD-TYPE 26 29
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 26(17P13.3) MUTATED     14   13
  DEL PEAK 26(17P13.3) WILD-TYPE   26   29
        clus
vv       DEL PEAK 26(17P13.3) MUTATED DEL PEAK 26(17P13.3) WILD-TYPE
  FEMALE                           14                             26
  MALE                             13                             29

Clustering(44) Variable = DEL PEAK 27(17P13.1) MUTATION ANALYSIS
D44V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 27(17P13.1) MUTATED   24  9
  DEL PEAK 27(17P13.1) WILD-TYPE 34 15
  DEL PEAK 27(17P13.1) MUTATED DEL PEAK 27(17P13.1) WILD-TYPE 
                            33                             49 
  DEL PEAK 27(17P13.1) MUTATED DEL PEAK 27(17P13.1) WILD-TYPE 
                             9                             15 
$`DEL PEAK 27(17P13.1) MUTATED`
TCGA-DX-A1KZ TCGA-DX-A23R TCGA-DX-A3LT TCGA-DX-A3U7 TCGA-DX-A3U9 TCGA-DX-A3UA 
       24.49        74.66        23.08        42.77        14.99        10.68 
TCGA-DX-A3UE TCGA-DX-A48J TCGA-DX-A48K TCGA-DX-A48L TCGA-DX-A48O TCGA-DX-A48P 
       34.88         9.73        19.30        24.26        27.22        14.96 
TCGA-DX-A48R TCGA-DX-A48U TCGA-DX-A48V TCGA-DX-A6B9 TCGA-DX-A6BA TCGA-DX-A6BB 
       26.47        72.72        25.08        11.47        54.87        10.78 
TCGA-DX-A6BK TCGA-FX-A3NJ TCGA-HB-A2OT TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EJ 
       16.18         0.10        26.89        12.62        21.37         3.22 
TCGA-IE-A4EK TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IW-A3M5 TCGA-JV-A5VE 
        1.38        31.76        28.21       143.41         5.88         6.25 
TCGA-KF-A41W TCGA-LI-A67I TCGA-PC-A5DK 
       11.70         5.23        75.48 

$`DEL PEAK 27(17P13.1) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L1 
       14.04         2.04        27.19        12.85        18.51        46.68 
TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V 
       42.44        31.56        29.85         5.23        76.37        66.87 
TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 
        6.28        27.78        60.30         8.55         9.70        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 
       43.04         9.01        70.49       108.10        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-DX-A3UB TCGA-DX-A3UC TCGA-DX-A3UD 
       15.02        17.75         4.50        44.45        39.35        28.80 
TCGA-DX-A3UF TCGA-DX-A48N TCGA-DX-A6BE TCGA-DX-A6BF TCGA-DX-A6BG TCGA-DX-A6BH 
       64.14        12.26        16.27         2.07         7.33         1.68 
TCGA-FX-A2QS TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IE-A4EI 
        0.46         0.07         0.07         4.54         4.14         8.94 
TCGA-IF-A4AJ TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VF 
       25.22       116.88        13.58        73.28        22.62         1.05 
TCGA-MO-A47R 
        0.10 

  DEL PEAK 27(17P13.1) MUTATED DEL PEAK 27(17P13.1) WILD-TYPE 
                          0.10                           0.07 
  DEL PEAK 27(17P13.1) MUTATED DEL PEAK 27(17P13.1) WILD-TYPE 
                        143.41                         116.88 
  DEL PEAK 27(17P13.1) MUTATED DEL PEAK 27(17P13.1) WILD-TYPE 
                         21.37                          17.10 
[1] "0.1 - 143.4 (21.4)" "0.1 - 116.9 (17.1)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 27(17P13.1) WILD-TYPE"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 27(17P13.1) WILD-TYPE"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
  "DEL PEAK 27(17P13.1) MUTATED"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK 27(17P13.1) MUTATED"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK 27(17P13.1) MUTATED"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
  "DEL PEAK 27(17P13.1) MUTATED"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK 27(17P13.1) MUTATED"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 27(17P13.1) WILD-TYPE"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 27(17P13.1) MUTATED"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 27(17P13.1) WILD-TYPE"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 27(17P13.1) MUTATED"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 27(17P13.1) MUTATED"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 27(17P13.1) WILD-TYPE"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 27(17P13.1) WILD-TYPE"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 27(17P13.1) WILD-TYPE"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
  "DEL PEAK 27(17P13.1) MUTATED"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK 27(17P13.1) MUTATED"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK 27(17P13.1) MUTATED"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
  "DEL PEAK 27(17P13.1) MUTATED"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK 27(17P13.1) MUTATED"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 27(17P13.1) WILD-TYPE"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 27(17P13.1) MUTATED"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 27(17P13.1) WILD-TYPE"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 27(17P13.1) MUTATED"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 27(17P13.1) MUTATED"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 27(17P13.1) WILD-TYPE"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 27(17P13.1) WILD-TYPE"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 27(17P13.1) WILD-TYPE"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
  "DEL PEAK 27(17P13.1) MUTATED"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK 27(17P13.1) MUTATED"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK 27(17P13.1) MUTATED"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
  "DEL PEAK 27(17P13.1) MUTATED"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK 27(17P13.1) MUTATED"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 27(17P13.1) WILD-TYPE"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 27(17P13.1) MUTATED"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 27(17P13.1) WILD-TYPE"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 27(17P13.1) MUTATED"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 27(17P13.1) WILD-TYPE" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 27(17P13.1) MUTATED" "DEL PEAK 27(17P13.1) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 27(17P13.1) MUTATED"   "DEL PEAK 27(17P13.1) MUTATED" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 27(17P13.1) WILD-TYPE"   "DEL PEAK 27(17P13.1) MUTATED" 
[1] "hr=" "1.2"
D44V2, continuous
D44V3, binary
                                cls
clus                              0  1
  DEL PEAK 27(17P13.1) MUTATED   20 13
  DEL PEAK 27(17P13.1) WILD-TYPE 20 29
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 27(17P13.1) MUTATED     20   13
  DEL PEAK 27(17P13.1) WILD-TYPE   20   29
        clus
vv       DEL PEAK 27(17P13.1) MUTATED DEL PEAK 27(17P13.1) WILD-TYPE
  FEMALE                           20                             20
  MALE                             13                             29

Clustering(45) Variable = DEL PEAK 28(17Q11.2) MUTATION ANALYSIS
D45V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 28(17Q11.2) MUTATED   11  7
  DEL PEAK 28(17Q11.2) WILD-TYPE 47 17
  DEL PEAK 28(17Q11.2) MUTATED DEL PEAK 28(17Q11.2) WILD-TYPE 
                            18                             64 
  DEL PEAK 28(17Q11.2) MUTATED DEL PEAK 28(17Q11.2) WILD-TYPE 
                             7                             17 
$`DEL PEAK 28(17Q11.2) MUTATED`
TCGA-DX-A1KZ TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A2J0 TCGA-DX-A3LT TCGA-DX-A3LW 
       24.49        74.66         6.28         9.70        23.08       108.10 
TCGA-DX-A3M1 TCGA-DX-A3U9 TCGA-DX-A3UA TCGA-DX-A3UD TCGA-DX-A3UF TCGA-DX-A48L 
       20.02        14.99        10.68        28.80        64.14        24.26 
TCGA-DX-A6BF TCGA-HB-A2OT TCGA-HB-A43Z TCGA-IE-A4EJ TCGA-IF-A4AJ TCGA-IW-A3M5 
        2.07        26.89         4.14         3.22        25.22         5.88 

$`DEL PEAK 28(17Q11.2) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L1 
       14.04         2.04        27.19        12.85        18.51        46.68 
TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V 
       42.44        31.56        29.85         5.23        76.37        66.87 
TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS 
       27.78        60.30         8.55        53.26        43.04         9.01 
TCGA-DX-A3LU TCGA-DX-A3LY TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 
       70.49        17.10        15.02        17.75        42.77         4.50 
TCGA-DX-A3UB TCGA-DX-A3UC TCGA-DX-A3UE TCGA-DX-A48J TCGA-DX-A48K TCGA-DX-A48N 
       44.45        39.35        34.88         9.73        19.30        12.26 
TCGA-DX-A48O TCGA-DX-A48P TCGA-DX-A48R TCGA-DX-A48U TCGA-DX-A48V TCGA-DX-A6B9 
       27.22        14.96        26.47        72.72        25.08        11.47 
TCGA-DX-A6BA TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BG TCGA-DX-A6BH TCGA-DX-A6BK 
       54.87        10.78        16.27         7.33         1.68        16.18 
TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A5W3 
        0.46         0.10         0.07         0.07         4.54        12.62 
TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 
       21.37         8.94         1.38        31.76        28.21       143.41 
TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF 
      116.88        13.58        73.28        22.62         6.25         1.05 
TCGA-KF-A41W TCGA-LI-A67I TCGA-MO-A47R TCGA-PC-A5DK 
       11.70         5.23         0.10        75.48 

  DEL PEAK 28(17Q11.2) MUTATED DEL PEAK 28(17Q11.2) WILD-TYPE 
                          2.07                           0.07 
  DEL PEAK 28(17Q11.2) MUTATED DEL PEAK 28(17Q11.2) WILD-TYPE 
                        108.10                         143.41 
  DEL PEAK 28(17Q11.2) MUTATED DEL PEAK 28(17Q11.2) WILD-TYPE 
                        21.550                         17.425 
[1] "2.1 - 108.1 (21.5)" "0.1 - 143.4 (17.4)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 28(17Q11.2) WILD-TYPE"   "DEL PEAK 28(17Q11.2) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 28(17Q11.2) WILD-TYPE"   "DEL PEAK 28(17Q11.2) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK 28(17Q11.2) WILD-TYPE"   "DEL PEAK 28(17Q11.2) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 28(17Q11.2) WILD-TYPE"   "DEL PEAK 28(17Q11.2) MUTATED" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 28(17Q11.2) WILD-TYPE"   "DEL PEAK 28(17Q11.2) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 28(17Q11.2) WILD-TYPE"   "DEL PEAK 28(17Q11.2) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 28(17Q11.2) WILD-TYPE"   "DEL PEAK 28(17Q11.2) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 28(17Q11.2) WILD-TYPE"   "DEL PEAK 28(17Q11.2) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 28(17Q11.2) WILD-TYPE"   "DEL PEAK 28(17Q11.2) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 28(17Q11.2) WILD-TYPE"   "DEL PEAK 28(17Q11.2) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK 28(17Q11.2) WILD-TYPE"   "DEL PEAK 28(17Q11.2) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 28(17Q11.2) WILD-TYPE"   "DEL PEAK 28(17Q11.2) MUTATED" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 28(17Q11.2) WILD-TYPE"   "DEL PEAK 28(17Q11.2) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 28(17Q11.2) WILD-TYPE"   "DEL PEAK 28(17Q11.2) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 28(17Q11.2) WILD-TYPE"   "DEL PEAK 28(17Q11.2) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 28(17Q11.2) WILD-TYPE"   "DEL PEAK 28(17Q11.2) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 28(17Q11.2) WILD-TYPE"   "DEL PEAK 28(17Q11.2) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 28(17Q11.2) WILD-TYPE"   "DEL PEAK 28(17Q11.2) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK 28(17Q11.2) WILD-TYPE"   "DEL PEAK 28(17Q11.2) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 28(17Q11.2) WILD-TYPE"   "DEL PEAK 28(17Q11.2) MUTATED" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 28(17Q11.2) WILD-TYPE"   "DEL PEAK 28(17Q11.2) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 28(17Q11.2) WILD-TYPE"   "DEL PEAK 28(17Q11.2) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 28(17Q11.2) WILD-TYPE"   "DEL PEAK 28(17Q11.2) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 28(17Q11.2) WILD-TYPE"   "DEL PEAK 28(17Q11.2) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 28(17Q11.2) MUTATED" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 28(17Q11.2) WILD-TYPE" "DEL PEAK 28(17Q11.2) WILD-TYPE" 
[1] "hr=" "1.5"
D45V2, continuous
D45V3, binary
                                cls
clus                              0  1
  DEL PEAK 28(17Q11.2) MUTATED    9  9
  DEL PEAK 28(17Q11.2) WILD-TYPE 31 33
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 28(17Q11.2) MUTATED      9    9
  DEL PEAK 28(17Q11.2) WILD-TYPE   31   33
        clus
vv       DEL PEAK 28(17Q11.2) MUTATED DEL PEAK 28(17Q11.2) WILD-TYPE
  FEMALE                            9                             31
  MALE                              9                             33

Clustering(46) Variable = DEL PEAK 29(17Q25.3) MUTATION ANALYSIS
D46V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 29(17Q25.3) MUTATED   15  8
  DEL PEAK 29(17Q25.3) WILD-TYPE 43 16
  DEL PEAK 29(17Q25.3) MUTATED DEL PEAK 29(17Q25.3) WILD-TYPE 
                            23                             59 
  DEL PEAK 29(17Q25.3) MUTATED DEL PEAK 29(17Q25.3) WILD-TYPE 
                             8                             16 
$`DEL PEAK 29(17Q25.3) MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A3LT 
        2.04        27.19        18.51        74.66         6.28        23.08 
TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U9 TCGA-DX-A3UD TCGA-DX-A3UE TCGA-DX-A3UF 
       17.10        20.02        14.99        28.80        34.88        64.14 
TCGA-DX-A48L TCGA-DX-A6BA TCGA-DX-A6BB TCGA-FX-A3NJ TCGA-HB-A5W3 TCGA-IE-A4EH 
       24.26        54.87        10.78         0.10        12.62        21.37 
TCGA-IE-A4EJ TCGA-IF-A4AJ TCGA-IS-A3KA TCGA-JV-A5VE TCGA-KF-A41W 
        3.22        25.22        13.58         6.25        11.70 

$`DEL PEAK 29(17Q25.3) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 
       14.04        12.85        24.49        46.68        42.44        31.56 
TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 
       29.85         5.23        76.37        66.87        27.78        60.30 
TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LU 
        8.55         9.70        53.26        43.04         9.01        70.49 
TCGA-DX-A3LW TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-DX-A3UA 
      108.10        15.02        17.75        42.77         4.50        10.68 
TCGA-DX-A3UB TCGA-DX-A3UC TCGA-DX-A48J TCGA-DX-A48K TCGA-DX-A48N TCGA-DX-A48O 
       44.45        39.35         9.73        19.30        12.26        27.22 
TCGA-DX-A48P TCGA-DX-A48R TCGA-DX-A48U TCGA-DX-A48V TCGA-DX-A6B9 TCGA-DX-A6BE 
       14.96        26.47        72.72        25.08        11.47        16.27 
TCGA-DX-A6BF TCGA-DX-A6BG TCGA-DX-A6BH TCGA-DX-A6BK TCGA-FX-A2QS TCGA-FX-A3RE 
        2.07         7.33         1.68        16.18         0.46         0.07 
TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z TCGA-IE-A4EI TCGA-IE-A4EK 
        0.07        26.89         4.54         4.14         8.94         1.38 
TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IW-A3M4 TCGA-IW-A3M5 
       31.76        28.21       143.41       116.88        73.28         5.88 
TCGA-IW-A3M6 TCGA-JV-A5VF TCGA-LI-A67I TCGA-MO-A47R TCGA-PC-A5DK 
       22.62         1.05         5.23         0.10        75.48 

  DEL PEAK 29(17Q25.3) MUTATED DEL PEAK 29(17Q25.3) WILD-TYPE 
                          0.10                           0.07 
  DEL PEAK 29(17Q25.3) MUTATED DEL PEAK 29(17Q25.3) WILD-TYPE 
                         74.66                         143.41 
  DEL PEAK 29(17Q25.3) MUTATED DEL PEAK 29(17Q25.3) WILD-TYPE 
                         18.51                          17.75 
[1] "0.1 - 74.7 (18.5)"  "0.1 - 143.4 (17.8)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
  "DEL PEAK 29(17Q25.3) MUTATED"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK 29(17Q25.3) MUTATED"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 29(17Q25.3) MUTATED"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
  "DEL PEAK 29(17Q25.3) MUTATED"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK 29(17Q25.3) MUTATED"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 29(17Q25.3) MUTATED"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
  "DEL PEAK 29(17Q25.3) MUTATED"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK 29(17Q25.3) MUTATED"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 29(17Q25.3) MUTATED"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 29(17Q25.3) WILD-TYPE"   "DEL PEAK 29(17Q25.3) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 29(17Q25.3) MUTATED" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 29(17Q25.3) WILD-TYPE" "DEL PEAK 29(17Q25.3) WILD-TYPE" 
[1] "hr=" "1.5"
D46V2, continuous
D46V3, binary
                                cls
clus                              0  1
  DEL PEAK 29(17Q25.3) MUTATED   12 11
  DEL PEAK 29(17Q25.3) WILD-TYPE 28 31
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 29(17Q25.3) MUTATED     12   11
  DEL PEAK 29(17Q25.3) WILD-TYPE   28   31
        clus
vv       DEL PEAK 29(17Q25.3) MUTATED DEL PEAK 29(17Q25.3) WILD-TYPE
  FEMALE                           12                             28
  MALE                             11                             31

Clustering(47) Variable = DEL PEAK 30(19P13.3) MUTATION ANALYSIS
D47V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 30(19P13.3) MUTATED   16  5
  DEL PEAK 30(19P13.3) WILD-TYPE 42 19
  DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE 
                            21                             61 
  DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE 
                             5                             19 
$`DEL PEAK 30(19P13.3) MUTATED`
TCGA-DX-A3LW TCGA-DX-A3U7 TCGA-DX-A3UC TCGA-DX-A3UF TCGA-DX-A48R TCGA-DX-A6B9 
      108.10        42.77        39.35        64.14        26.47        11.47 
TCGA-DX-A6BA TCGA-FX-A48G TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI 
       54.87         0.07         4.14        12.62        21.37         8.94 
TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K7 TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-IW-A3M6 
       25.22        31.76       143.41        13.58         5.88        22.62 
TCGA-JV-A5VF TCGA-KF-A41W TCGA-LI-A67I 
        1.05        11.70         5.23 

$`DEL PEAK 30(19P13.3) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 
       14.04         2.04        27.19        12.85        24.49        18.51 
TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T 
       46.68        42.44        31.56        29.85        74.66         5.23 
TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ 
       76.37        66.87         6.28        27.78        60.30         8.55 
TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU 
        9.70        53.26        43.04         9.01        23.08        70.49 
TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 TCGA-DX-A3U8 TCGA-DX-A3U9 
       17.10        20.02        15.02        17.75         4.50        14.99 
TCGA-DX-A3UA TCGA-DX-A3UB TCGA-DX-A3UD TCGA-DX-A3UE TCGA-DX-A48J TCGA-DX-A48K 
       10.68        44.45        28.80        34.88         9.73        19.30 
TCGA-DX-A48L TCGA-DX-A48N TCGA-DX-A48O TCGA-DX-A48P TCGA-DX-A48U TCGA-DX-A48V 
       24.26        12.26        27.22        14.96        72.72        25.08 
TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BF TCGA-DX-A6BG TCGA-DX-A6BH TCGA-DX-A6BK 
       10.78        16.27         2.07         7.33         1.68        16.18 
TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-HB-A2OT TCGA-HB-A3YV TCGA-IE-A4EJ 
        0.46         0.10         0.07        26.89         4.54         3.22 
TCGA-IE-A4EK TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IW-A3M4 TCGA-JV-A5VE TCGA-MO-A47R 
        1.38        28.21       116.88        73.28         6.25         0.10 
TCGA-PC-A5DK 
       75.48 

  DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE 
                          0.07                           0.07 
  DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE 
                        143.41                         116.88 
  DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE 
                         21.37                          17.75 
[1] "0.1 - 143.4 (21.4)" "0.1 - 116.9 (17.8)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 30(19P13.3) MUTATED"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 30(19P13.3) MUTATED"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 30(19P13.3) MUTATED"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 30(19P13.3) MUTATED"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 30(19P13.3) MUTATED"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 30(19P13.3) MUTATED"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 30(19P13.3) MUTATED"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
  "DEL PEAK 30(19P13.3) MUTATED" "DEL PEAK 30(19P13.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 30(19P13.3) MUTATED"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 30(19P13.3) WILD-TYPE"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 30(19P13.3) MUTATED"   "DEL PEAK 30(19P13.3) MUTATED" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 30(19P13.3) WILD-TYPE" "DEL PEAK 30(19P13.3) WILD-TYPE" 
[1] "hr=" "1.4"
D47V2, continuous
D47V3, binary
                                cls
clus                              0  1
  DEL PEAK 30(19P13.3) MUTATED   17  4
  DEL PEAK 30(19P13.3) WILD-TYPE 23 38
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 30(19P13.3) MUTATED     17    4
  DEL PEAK 30(19P13.3) WILD-TYPE   23   38
        clus
vv       DEL PEAK 30(19P13.3) MUTATED DEL PEAK 30(19P13.3) WILD-TYPE
  FEMALE                           17                             23
  MALE                              4                             38

Clustering(48) Variable = DEL PEAK 31(19Q13.43) MUTATION ANALYSIS
D48V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 31(19Q13.43) MUTATED   21  8
  DEL PEAK 31(19Q13.43) WILD-TYPE 37 16
  DEL PEAK 31(19Q13.43) MUTATED DEL PEAK 31(19Q13.43) WILD-TYPE 
                             29                              53 
  DEL PEAK 31(19Q13.43) MUTATED DEL PEAK 31(19Q13.43) WILD-TYPE 
                              8                              16 
$`DEL PEAK 31(19Q13.43) MUTATED`
TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A23R TCGA-DX-A2J0 TCGA-DX-A3LT TCGA-DX-A3U7 
        2.04        12.85        74.66         9.70        23.08        42.77 
TCGA-DX-A3UA TCGA-DX-A3UD TCGA-DX-A48L TCGA-DX-A48N TCGA-DX-A48P TCGA-DX-A48U 
       10.68        28.80        24.26        12.26        14.96        72.72 
TCGA-DX-A48V TCGA-DX-A6B9 TCGA-DX-A6BA TCGA-DX-A6BH TCGA-DX-A6BK TCGA-FX-A2QS 
       25.08        11.47        54.87         1.68        16.18         0.46 
TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EJ TCGA-IF-A4AK 
        0.07         0.07         4.54        12.62         3.22        31.76 
TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-LI-A67I TCGA-PC-A5DK 
       13.58        73.28        22.62         5.23        75.48 

$`DEL PEAK 31(19Q13.43) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 
       14.04        27.19        24.49        18.51        46.68        42.44 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y 
       31.56        29.85         5.23        76.37        66.87         6.28 
TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS 
       27.78        60.30         8.55        53.26        43.04         9.01 
TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 
       70.49       108.10        17.10        20.02        15.02        17.75 
TCGA-DX-A3U8 TCGA-DX-A3U9 TCGA-DX-A3UB TCGA-DX-A3UC TCGA-DX-A3UE TCGA-DX-A3UF 
        4.50        14.99        44.45        39.35        34.88        64.14 
TCGA-DX-A48J TCGA-DX-A48K TCGA-DX-A48O TCGA-DX-A48R TCGA-DX-A6BB TCGA-DX-A6BE 
        9.73        19.30        27.22        26.47        10.78        16.27 
TCGA-DX-A6BF TCGA-DX-A6BG TCGA-FX-A3NJ TCGA-HB-A2OT TCGA-HB-A43Z TCGA-IE-A4EH 
        2.07         7.33         0.10        26.89         4.14        21.37 
TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IS-A3K6 TCGA-IS-A3K7 TCGA-IS-A3K8 
        8.94         1.38        25.22        28.21       143.41       116.88 
TCGA-IW-A3M5 TCGA-JV-A5VE TCGA-JV-A5VF TCGA-KF-A41W TCGA-MO-A47R 
        5.88         6.25         1.05        11.70         0.10 

  DEL PEAK 31(19Q13.43) MUTATED DEL PEAK 31(19Q13.43) WILD-TYPE 
                           0.07                            0.10 
  DEL PEAK 31(19Q13.43) MUTATED DEL PEAK 31(19Q13.43) WILD-TYPE 
                          75.48                          143.41 
  DEL PEAK 31(19Q13.43) MUTATED DEL PEAK 31(19Q13.43) WILD-TYPE 
                          13.58                           20.02 
[1] "0.1 - 75.5 (13.6)"  "0.1 - 143.4 (20.0)"
                     TCGA-DX-A1KU                      TCGA-DX-A1KW 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-DX-A1KX                      TCGA-DX-A1KY 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-DX-A1KZ                      TCGA-DX-A1L0 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A1L1                      TCGA-DX-A1L2 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A1L3                      TCGA-DX-A1L4 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A23R                      TCGA-DX-A23T 
  "DEL PEAK 31(19Q13.43) MUTATED" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A23U                      TCGA-DX-A23V 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A23Y                      TCGA-DX-A23Z 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A240                      TCGA-DX-A2IZ 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A2J0                      TCGA-DX-A2J1 
  "DEL PEAK 31(19Q13.43) MUTATED" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A2J4                      TCGA-DX-A3LS 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A3LT                      TCGA-DX-A3LU 
  "DEL PEAK 31(19Q13.43) MUTATED" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A3LW                      TCGA-DX-A3LY 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A3M1                      TCGA-DX-A3U5 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A3U6                      TCGA-DX-A3U7 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-DX-A3U8                      TCGA-DX-A3U9 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A3UA                      TCGA-DX-A3UB 
  "DEL PEAK 31(19Q13.43) MUTATED" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A3UC                      TCGA-DX-A3UD 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-DX-A3UE                      TCGA-DX-A3UF 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A48J                      TCGA-DX-A48K 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A48L                      TCGA-DX-A48N 
  "DEL PEAK 31(19Q13.43) MUTATED"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-DX-A48O                      TCGA-DX-A48P 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-DX-A48R                      TCGA-DX-A48U 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-DX-A48V                      TCGA-DX-A6B9 
  "DEL PEAK 31(19Q13.43) MUTATED"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-DX-A6BA                      TCGA-DX-A6BB 
  "DEL PEAK 31(19Q13.43) MUTATED" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A6BE                      TCGA-DX-A6BF 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A6BG                      TCGA-DX-A6BH 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-DX-A6BK                      TCGA-FX-A2QS 
  "DEL PEAK 31(19Q13.43) MUTATED"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-FX-A3NJ                      TCGA-FX-A3RE 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-FX-A48G                      TCGA-HB-A2OT 
  "DEL PEAK 31(19Q13.43) MUTATED" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-HB-A3YV                      TCGA-HB-A43Z 
  "DEL PEAK 31(19Q13.43) MUTATED" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-HB-A5W3                      TCGA-IE-A4EH 
  "DEL PEAK 31(19Q13.43) MUTATED" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-IE-A4EI                      TCGA-IE-A4EJ 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-IE-A4EK                      TCGA-IF-A4AJ 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-IF-A4AK                      TCGA-IS-A3K6 
  "DEL PEAK 31(19Q13.43) MUTATED" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-IS-A3K7                      TCGA-IS-A3K8 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-IS-A3KA                      TCGA-IW-A3M4 
  "DEL PEAK 31(19Q13.43) MUTATED"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-IW-A3M5                      TCGA-IW-A3M6 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-JV-A5VE                      TCGA-JV-A5VF 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-KF-A41W                      TCGA-LI-A67I 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-MO-A47R                      TCGA-PC-A5DK 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-DX-A1KU                      TCGA-DX-A1KW 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-DX-A1KX                      TCGA-DX-A1KY 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-DX-A1KZ                      TCGA-DX-A1L0 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A1L1                      TCGA-DX-A1L2 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A1L3                      TCGA-DX-A1L4 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A23R                      TCGA-DX-A23T 
  "DEL PEAK 31(19Q13.43) MUTATED" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A23U                      TCGA-DX-A23V 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A23Y                      TCGA-DX-A23Z 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A240                      TCGA-DX-A2IZ 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A2J0                      TCGA-DX-A2J1 
  "DEL PEAK 31(19Q13.43) MUTATED" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A2J4                      TCGA-DX-A3LS 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A3LT                      TCGA-DX-A3LU 
  "DEL PEAK 31(19Q13.43) MUTATED" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A3LW                      TCGA-DX-A3LY 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A3M1                      TCGA-DX-A3U5 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A3U6                      TCGA-DX-A3U7 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-DX-A3U8                      TCGA-DX-A3U9 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A3UA                      TCGA-DX-A3UB 
  "DEL PEAK 31(19Q13.43) MUTATED" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A3UC                      TCGA-DX-A3UD 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-DX-A3UE                      TCGA-DX-A3UF 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A48J                      TCGA-DX-A48K 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A48L                      TCGA-DX-A48N 
  "DEL PEAK 31(19Q13.43) MUTATED"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-DX-A48O                      TCGA-DX-A48P 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-DX-A48R                      TCGA-DX-A48U 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-DX-A48V                      TCGA-DX-A6B9 
  "DEL PEAK 31(19Q13.43) MUTATED"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-DX-A6BA                      TCGA-DX-A6BB 
  "DEL PEAK 31(19Q13.43) MUTATED" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A6BE                      TCGA-DX-A6BF 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A6BG                      TCGA-DX-A6BH 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-DX-A6BK                      TCGA-FX-A2QS 
  "DEL PEAK 31(19Q13.43) MUTATED"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-FX-A3NJ                      TCGA-FX-A3RE 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-FX-A48G                      TCGA-HB-A2OT 
  "DEL PEAK 31(19Q13.43) MUTATED" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-HB-A3YV                      TCGA-HB-A43Z 
  "DEL PEAK 31(19Q13.43) MUTATED" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-HB-A5W3                      TCGA-IE-A4EH 
  "DEL PEAK 31(19Q13.43) MUTATED" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-IE-A4EI                      TCGA-IE-A4EJ 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-IE-A4EK                      TCGA-IF-A4AJ 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-IF-A4AK                      TCGA-IS-A3K6 
  "DEL PEAK 31(19Q13.43) MUTATED" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-IS-A3K7                      TCGA-IS-A3K8 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-IS-A3KA                      TCGA-IW-A3M4 
  "DEL PEAK 31(19Q13.43) MUTATED"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-IW-A3M5                      TCGA-IW-A3M6 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-JV-A5VE                      TCGA-JV-A5VF 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-KF-A41W                      TCGA-LI-A67I 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-MO-A47R                      TCGA-PC-A5DK 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-DX-A1KU                      TCGA-DX-A1KW 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-DX-A1KX                      TCGA-DX-A1KY 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-DX-A1KZ                      TCGA-DX-A1L0 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A1L1                      TCGA-DX-A1L2 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A1L3                      TCGA-DX-A1L4 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A23R                      TCGA-DX-A23T 
  "DEL PEAK 31(19Q13.43) MUTATED" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A23U                      TCGA-DX-A23V 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A23Y                      TCGA-DX-A23Z 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A240                      TCGA-DX-A2IZ 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A2J0                      TCGA-DX-A2J1 
  "DEL PEAK 31(19Q13.43) MUTATED" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A2J4                      TCGA-DX-A3LS 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A3LT                      TCGA-DX-A3LU 
  "DEL PEAK 31(19Q13.43) MUTATED" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A3LW                      TCGA-DX-A3LY 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A3M1                      TCGA-DX-A3U5 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A3U6                      TCGA-DX-A3U7 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-DX-A3U8                      TCGA-DX-A3U9 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A3UA                      TCGA-DX-A3UB 
  "DEL PEAK 31(19Q13.43) MUTATED" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A3UC                      TCGA-DX-A3UD 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-DX-A3UE                      TCGA-DX-A3UF 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A48J                      TCGA-DX-A48K 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A48L                      TCGA-DX-A48N 
  "DEL PEAK 31(19Q13.43) MUTATED"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-DX-A48O                      TCGA-DX-A48P 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-DX-A48R                      TCGA-DX-A48U 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-DX-A48V                      TCGA-DX-A6B9 
  "DEL PEAK 31(19Q13.43) MUTATED"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-DX-A6BA                      TCGA-DX-A6BB 
  "DEL PEAK 31(19Q13.43) MUTATED" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A6BE                      TCGA-DX-A6BF 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-DX-A6BG                      TCGA-DX-A6BH 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-DX-A6BK                      TCGA-FX-A2QS 
  "DEL PEAK 31(19Q13.43) MUTATED"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-FX-A3NJ                      TCGA-FX-A3RE 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-FX-A48G                      TCGA-HB-A2OT 
  "DEL PEAK 31(19Q13.43) MUTATED" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-HB-A3YV                      TCGA-HB-A43Z 
  "DEL PEAK 31(19Q13.43) MUTATED" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-HB-A5W3                      TCGA-IE-A4EH 
  "DEL PEAK 31(19Q13.43) MUTATED" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-IE-A4EI                      TCGA-IE-A4EJ 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-IE-A4EK                      TCGA-IF-A4AJ 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-IF-A4AK                      TCGA-IS-A3K6 
  "DEL PEAK 31(19Q13.43) MUTATED" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-IS-A3K7                      TCGA-IS-A3K8 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-IS-A3KA                      TCGA-IW-A3M4 
  "DEL PEAK 31(19Q13.43) MUTATED"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-IW-A3M5                      TCGA-IW-A3M6 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-JV-A5VE                      TCGA-JV-A5VF 
"DEL PEAK 31(19Q13.43) WILD-TYPE" "DEL PEAK 31(19Q13.43) WILD-TYPE" 
                     TCGA-KF-A41W                      TCGA-LI-A67I 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
                     TCGA-MO-A47R                      TCGA-PC-A5DK 
"DEL PEAK 31(19Q13.43) WILD-TYPE"   "DEL PEAK 31(19Q13.43) MUTATED" 
[1] "hr=" "1.2"
D48V2, continuous
D48V3, binary
                                 cls
clus                               0  1
  DEL PEAK 31(19Q13.43) MUTATED   17 12
  DEL PEAK 31(19Q13.43) WILD-TYPE 23 30
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 31(19Q13.43) MUTATED     17   12
  DEL PEAK 31(19Q13.43) WILD-TYPE   23   30
        clus
vv       DEL PEAK 31(19Q13.43) MUTATED DEL PEAK 31(19Q13.43) WILD-TYPE
  FEMALE                            17                              23
  MALE                              12                              30

Clustering(49) Variable = DEL PEAK 32(21Q11.2) MUTATION ANALYSIS
D49V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 32(21Q11.2) MUTATED   11  5
  DEL PEAK 32(21Q11.2) WILD-TYPE 47 19
  DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE 
                            16                             66 
  DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE 
                             5                             19 
$`DEL PEAK 32(21Q11.2) MUTATED`
TCGA-DX-A1L0 TCGA-DX-A1L2 TCGA-DX-A23R TCGA-DX-A23Y TCGA-DX-A3LY TCGA-DX-A3M1 
       18.51        42.44        74.66         6.28        17.10        20.02 
TCGA-DX-A3U5 TCGA-DX-A3UA TCGA-DX-A48R TCGA-DX-A48V TCGA-HB-A2OT TCGA-HB-A43Z 
       15.02        10.68        26.47        25.08        26.89         4.14 
TCGA-IS-A3K7 TCGA-IW-A3M5 TCGA-JV-A5VE TCGA-JV-A5VF 
      143.41         5.88         6.25         1.05 

$`DEL PEAK 32(21Q11.2) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 
       14.04         2.04        27.19        12.85        24.49        46.68 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z 
       31.56        29.85         5.23        76.37        66.87        27.78 
TCGA-DX-A240 TCGA-DX-A2IZ TCGA-DX-A2J0 TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS 
       60.30         8.55         9.70        53.26        43.04         9.01 
TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 
       23.08        70.49       108.10        17.75        42.77         4.50 
TCGA-DX-A3U9 TCGA-DX-A3UB TCGA-DX-A3UC TCGA-DX-A3UD TCGA-DX-A3UE TCGA-DX-A3UF 
       14.99        44.45        39.35        28.80        34.88        64.14 
TCGA-DX-A48J TCGA-DX-A48K TCGA-DX-A48L TCGA-DX-A48N TCGA-DX-A48O TCGA-DX-A48P 
        9.73        19.30        24.26        12.26        27.22        14.96 
TCGA-DX-A48U TCGA-DX-A6B9 TCGA-DX-A6BA TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BF 
       72.72        11.47        54.87        10.78        16.27         2.07 
TCGA-DX-A6BG TCGA-DX-A6BH TCGA-DX-A6BK TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE 
        7.33         1.68        16.18         0.46         0.10         0.07 
TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI TCGA-IE-A4EJ 
        0.07         4.54        12.62        21.37         8.94         3.22 
TCGA-IE-A4EK TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IS-A3KA 
        1.38        25.22        31.76        28.21       116.88        13.58 
TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-KF-A41W TCGA-LI-A67I TCGA-MO-A47R TCGA-PC-A5DK 
       73.28        22.62        11.70         5.23         0.10        75.48 

  DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE 
                          1.05                           0.07 
  DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE 
                        143.41                         116.88 
  DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE 
                        17.805                         18.525 
[1] "1.1 - 143.4 (17.8)" "0.1 - 116.9 (18.5)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 32(21Q11.2) WILD-TYPE"   "DEL PEAK 32(21Q11.2) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 32(21Q11.2) WILD-TYPE"   "DEL PEAK 32(21Q11.2) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 32(21Q11.2) MUTATED" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 32(21Q11.2) MUTATED" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 32(21Q11.2) WILD-TYPE"   "DEL PEAK 32(21Q11.2) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 32(21Q11.2) MUTATED"   "DEL PEAK 32(21Q11.2) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "DEL PEAK 32(21Q11.2) MUTATED" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK 32(21Q11.2) MUTATED" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
  "DEL PEAK 32(21Q11.2) MUTATED" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 32(21Q11.2) WILD-TYPE"   "DEL PEAK 32(21Q11.2) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 32(21Q11.2) WILD-TYPE"   "DEL PEAK 32(21Q11.2) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 32(21Q11.2) MUTATED" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 32(21Q11.2) MUTATED" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 32(21Q11.2) MUTATED"   "DEL PEAK 32(21Q11.2) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 32(21Q11.2) WILD-TYPE"   "DEL PEAK 32(21Q11.2) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 32(21Q11.2) WILD-TYPE"   "DEL PEAK 32(21Q11.2) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 32(21Q11.2) MUTATED" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 32(21Q11.2) MUTATED" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 32(21Q11.2) WILD-TYPE"   "DEL PEAK 32(21Q11.2) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 32(21Q11.2) MUTATED"   "DEL PEAK 32(21Q11.2) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "DEL PEAK 32(21Q11.2) MUTATED" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK 32(21Q11.2) MUTATED" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
  "DEL PEAK 32(21Q11.2) MUTATED" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 32(21Q11.2) WILD-TYPE"   "DEL PEAK 32(21Q11.2) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 32(21Q11.2) WILD-TYPE"   "DEL PEAK 32(21Q11.2) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 32(21Q11.2) MUTATED" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 32(21Q11.2) MUTATED" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 32(21Q11.2) MUTATED"   "DEL PEAK 32(21Q11.2) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 32(21Q11.2) WILD-TYPE"   "DEL PEAK 32(21Q11.2) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 32(21Q11.2) WILD-TYPE"   "DEL PEAK 32(21Q11.2) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 32(21Q11.2) MUTATED" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 32(21Q11.2) MUTATED" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 32(21Q11.2) WILD-TYPE"   "DEL PEAK 32(21Q11.2) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 32(21Q11.2) MUTATED"   "DEL PEAK 32(21Q11.2) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "DEL PEAK 32(21Q11.2) MUTATED" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK 32(21Q11.2) MUTATED" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
  "DEL PEAK 32(21Q11.2) MUTATED" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 32(21Q11.2) WILD-TYPE"   "DEL PEAK 32(21Q11.2) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 32(21Q11.2) WILD-TYPE"   "DEL PEAK 32(21Q11.2) MUTATED" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 32(21Q11.2) MUTATED" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 32(21Q11.2) MUTATED" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 32(21Q11.2) MUTATED"   "DEL PEAK 32(21Q11.2) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 32(21Q11.2) WILD-TYPE" "DEL PEAK 32(21Q11.2) WILD-TYPE" 
[1] "hr=" "1.1"
D49V2, continuous
D49V3, binary
                                cls
clus                              0  1
  DEL PEAK 32(21Q11.2) MUTATED    8  8
  DEL PEAK 32(21Q11.2) WILD-TYPE 32 34
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 32(21Q11.2) MUTATED      8    8
  DEL PEAK 32(21Q11.2) WILD-TYPE   32   34
        clus
vv       DEL PEAK 32(21Q11.2) MUTATED DEL PEAK 32(21Q11.2) WILD-TYPE
  FEMALE                            8                             32
  MALE                              8                             34

Clustering(50) Variable = DEL PEAK 33(21Q22.3) MUTATION ANALYSIS
D50V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 33(21Q22.3) MUTATED   18  7
  DEL PEAK 33(21Q22.3) WILD-TYPE 40 17
  DEL PEAK 33(21Q22.3) MUTATED DEL PEAK 33(21Q22.3) WILD-TYPE 
                            25                             57 
  DEL PEAK 33(21Q22.3) MUTATED DEL PEAK 33(21Q22.3) WILD-TYPE 
                             7                             17 
$`DEL PEAK 33(21Q22.3) MUTATED`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1L0 TCGA-DX-A1L2 TCGA-DX-A23R TCGA-DX-A23Y 
       14.04        27.19        18.51        42.44        74.66         6.28 
TCGA-DX-A2J0 TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3UF 
        9.70       108.10        17.10        20.02        15.02        64.14 
TCGA-DX-A48L TCGA-DX-A6BB TCGA-DX-A6BF TCGA-FX-A2QS TCGA-HB-A2OT TCGA-IE-A4EJ 
       24.26        10.78         2.07         0.46        26.89         3.22 
TCGA-IF-A4AJ TCGA-IF-A4AK TCGA-IS-A3K7 TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE 
       25.22        31.76       143.41         5.88        22.62         6.25 
TCGA-KF-A41W 
       11.70 

$`DEL PEAK 33(21Q22.3) WILD-TYPE`
TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L3 TCGA-DX-A1L4 
        2.04        12.85        24.49        46.68        31.56        29.85 
TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2IZ 
        5.23        76.37        66.87        27.78        60.30         8.55 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3U6 
       53.26        43.04         9.01        23.08        70.49        17.75 
TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-DX-A3U9 TCGA-DX-A3UA TCGA-DX-A3UB TCGA-DX-A3UC 
       42.77         4.50        14.99        10.68        44.45        39.35 
TCGA-DX-A3UD TCGA-DX-A3UE TCGA-DX-A48J TCGA-DX-A48K TCGA-DX-A48N TCGA-DX-A48O 
       28.80        34.88         9.73        19.30        12.26        27.22 
TCGA-DX-A48P TCGA-DX-A48R TCGA-DX-A48U TCGA-DX-A48V TCGA-DX-A6B9 TCGA-DX-A6BA 
       14.96        26.47        72.72        25.08        11.47        54.87 
TCGA-DX-A6BE TCGA-DX-A6BG TCGA-DX-A6BH TCGA-DX-A6BK TCGA-FX-A3NJ TCGA-FX-A3RE 
       16.27         7.33         1.68        16.18         0.10         0.07 
TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EI 
        0.07         4.54         4.14        12.62        21.37         8.94 
TCGA-IE-A4EK TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M4 TCGA-JV-A5VF 
        1.38        28.21       116.88        13.58        73.28         1.05 
TCGA-LI-A67I TCGA-MO-A47R TCGA-PC-A5DK 
        5.23         0.10        75.48 

  DEL PEAK 33(21Q22.3) MUTATED DEL PEAK 33(21Q22.3) WILD-TYPE 
                          0.46                           0.07 
  DEL PEAK 33(21Q22.3) MUTATED DEL PEAK 33(21Q22.3) WILD-TYPE 
                        143.41                         116.88 
  DEL PEAK 33(21Q22.3) MUTATED DEL PEAK 33(21Q22.3) WILD-TYPE 
                         18.51                          17.75 
[1] "0.5 - 143.4 (18.5)" "0.1 - 116.9 (17.8)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 33(21Q22.3) WILD-TYPE"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 33(21Q22.3) WILD-TYPE"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 33(21Q22.3) MUTATED"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 33(21Q22.3) MUTATED"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK 33(21Q22.3) WILD-TYPE"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
"DEL PEAK 33(21Q22.3) WILD-TYPE"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 33(21Q22.3) WILD-TYPE"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK 33(21Q22.3) WILD-TYPE"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 33(21Q22.3) WILD-TYPE"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 33(21Q22.3) WILD-TYPE"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 33(21Q22.3) WILD-TYPE"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 33(21Q22.3) MUTATED"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 33(21Q22.3) WILD-TYPE"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 33(21Q22.3) WILD-TYPE"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 33(21Q22.3) MUTATED"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 33(21Q22.3) MUTATED"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK 33(21Q22.3) WILD-TYPE"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
"DEL PEAK 33(21Q22.3) WILD-TYPE"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 33(21Q22.3) WILD-TYPE"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK 33(21Q22.3) WILD-TYPE"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 33(21Q22.3) WILD-TYPE"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 33(21Q22.3) WILD-TYPE"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 33(21Q22.3) WILD-TYPE"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 33(21Q22.3) MUTATED"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 33(21Q22.3) WILD-TYPE"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 33(21Q22.3) WILD-TYPE"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
  "DEL PEAK 33(21Q22.3) MUTATED"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
  "DEL PEAK 33(21Q22.3) MUTATED"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK 33(21Q22.3) WILD-TYPE"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
"DEL PEAK 33(21Q22.3) WILD-TYPE"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 33(21Q22.3) WILD-TYPE"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK 33(21Q22.3) WILD-TYPE"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
"DEL PEAK 33(21Q22.3) WILD-TYPE"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 33(21Q22.3) WILD-TYPE"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 33(21Q22.3) WILD-TYPE"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
  "DEL PEAK 33(21Q22.3) MUTATED"   "DEL PEAK 33(21Q22.3) MUTATED" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
  "DEL PEAK 33(21Q22.3) MUTATED" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 33(21Q22.3) WILD-TYPE" "DEL PEAK 33(21Q22.3) WILD-TYPE" 
[1] "hr=" "1.1"
D50V2, continuous
D50V3, binary
                                cls
clus                              0  1
  DEL PEAK 33(21Q22.3) MUTATED   14 11
  DEL PEAK 33(21Q22.3) WILD-TYPE 26 31
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 33(21Q22.3) MUTATED     14   11
  DEL PEAK 33(21Q22.3) WILD-TYPE   26   31
        clus
vv       DEL PEAK 33(21Q22.3) MUTATED DEL PEAK 33(21Q22.3) WILD-TYPE
  FEMALE                           14                             26
  MALE                             11                             31

Clustering(51) Variable = DEL PEAK 34(22Q13.31) MUTATION ANALYSIS
D51V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 34(22Q13.31) MUTATED   20 12
  DEL PEAK 34(22Q13.31) WILD-TYPE 38 12
  DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE 
                             32                              50 
  DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE 
                             12                              12 
$`DEL PEAK 34(22Q13.31) MUTATED`
TCGA-DX-A1KW TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A23R TCGA-DX-A23V TCGA-DX-A23Y 
        2.04        46.68        42.44        74.66        66.87         6.28 
TCGA-DX-A2IZ TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LW TCGA-DX-A3M1 TCGA-DX-A3U7 
        8.55         9.01        23.08       108.10        20.02        42.77 
TCGA-DX-A3U9 TCGA-DX-A48L TCGA-DX-A48R TCGA-DX-A6BA TCGA-DX-A6BF TCGA-DX-A6BK 
       14.99        24.26        26.47        54.87         2.07        16.18 
TCGA-FX-A2QS TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EH 
        0.46         0.07         0.07         4.54        12.62        21.37 
TCGA-IF-A4AJ TCGA-IS-A3K7 TCGA-IS-A3K8 TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-IW-A3M6 
       25.22       143.41       116.88        13.58         5.88        22.62 
TCGA-JV-A5VF TCGA-KF-A41W 
        1.05        11.70 

$`DEL PEAK 34(22Q13.31) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L3 
       14.04        27.19        12.85        24.49        18.51        31.56 
TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23Z TCGA-DX-A240 TCGA-DX-A2J0 
       29.85         5.23        76.37        27.78        60.30         9.70 
TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LU TCGA-DX-A3LY TCGA-DX-A3U5 TCGA-DX-A3U6 
       53.26        43.04        70.49        17.10        15.02        17.75 
TCGA-DX-A3U8 TCGA-DX-A3UA TCGA-DX-A3UB TCGA-DX-A3UC TCGA-DX-A3UD TCGA-DX-A3UE 
        4.50        10.68        44.45        39.35        28.80        34.88 
TCGA-DX-A3UF TCGA-DX-A48J TCGA-DX-A48K TCGA-DX-A48N TCGA-DX-A48O TCGA-DX-A48P 
       64.14         9.73        19.30        12.26        27.22        14.96 
TCGA-DX-A48U TCGA-DX-A48V TCGA-DX-A6B9 TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BG 
       72.72        25.08        11.47        10.78        16.27         7.33 
TCGA-DX-A6BH TCGA-FX-A3NJ TCGA-HB-A2OT TCGA-HB-A43Z TCGA-IE-A4EI TCGA-IE-A4EJ 
        1.68         0.10        26.89         4.14         8.94         3.22 
TCGA-IE-A4EK TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IW-A3M4 TCGA-JV-A5VE TCGA-LI-A67I 
        1.38        31.76        28.21        73.28         6.25         5.23 
TCGA-MO-A47R TCGA-PC-A5DK 
        0.10        75.48 

  DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE 
                           0.07                            0.10 
  DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE 
                         143.41                           76.37 
  DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE 
                          18.10                           18.13 
[1] "0.1 - 143.4 (18.1)" "0.1 - 76.4 (18.1)" 
                     TCGA-DX-A1KU                      TCGA-DX-A1KW 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DX-A1KX                      TCGA-DX-A1KY 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A1KZ                      TCGA-DX-A1L0 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A1L1                      TCGA-DX-A1L2 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DX-A1L3                      TCGA-DX-A1L4 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A23R                      TCGA-DX-A23T 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A23U                      TCGA-DX-A23V 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DX-A23Y                      TCGA-DX-A23Z 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A240                      TCGA-DX-A2IZ 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DX-A2J0                      TCGA-DX-A2J1 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A2J4                      TCGA-DX-A3LS 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DX-A3LT                      TCGA-DX-A3LU 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A3LW                      TCGA-DX-A3LY 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A3M1                      TCGA-DX-A3U5 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A3U6                      TCGA-DX-A3U7 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DX-A3U8                      TCGA-DX-A3U9 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DX-A3UA                      TCGA-DX-A3UB 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A3UC                      TCGA-DX-A3UD 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A3UE                      TCGA-DX-A3UF 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A48J                      TCGA-DX-A48K 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A48L                      TCGA-DX-A48N 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A48O                      TCGA-DX-A48P 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A48R                      TCGA-DX-A48U 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A48V                      TCGA-DX-A6B9 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A6BA                      TCGA-DX-A6BB 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A6BE                      TCGA-DX-A6BF 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DX-A6BG                      TCGA-DX-A6BH 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A6BK                      TCGA-FX-A2QS 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-FX-A3NJ                      TCGA-FX-A3RE 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-FX-A48G                      TCGA-HB-A2OT 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-HB-A3YV                      TCGA-HB-A43Z 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-HB-A5W3                      TCGA-IE-A4EH 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-IE-A4EI                      TCGA-IE-A4EJ 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-IE-A4EK                      TCGA-IF-A4AJ 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-IF-A4AK                      TCGA-IS-A3K6 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-IS-A3K7                      TCGA-IS-A3K8 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-IS-A3KA                      TCGA-IW-A3M4 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-IW-A3M5                      TCGA-IW-A3M6 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-JV-A5VE                      TCGA-JV-A5VF 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-KF-A41W                      TCGA-LI-A67I 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-MO-A47R                      TCGA-PC-A5DK 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A1KU                      TCGA-DX-A1KW 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DX-A1KX                      TCGA-DX-A1KY 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A1KZ                      TCGA-DX-A1L0 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A1L1                      TCGA-DX-A1L2 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DX-A1L3                      TCGA-DX-A1L4 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A23R                      TCGA-DX-A23T 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A23U                      TCGA-DX-A23V 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DX-A23Y                      TCGA-DX-A23Z 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A240                      TCGA-DX-A2IZ 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DX-A2J0                      TCGA-DX-A2J1 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A2J4                      TCGA-DX-A3LS 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DX-A3LT                      TCGA-DX-A3LU 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A3LW                      TCGA-DX-A3LY 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A3M1                      TCGA-DX-A3U5 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A3U6                      TCGA-DX-A3U7 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DX-A3U8                      TCGA-DX-A3U9 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DX-A3UA                      TCGA-DX-A3UB 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A3UC                      TCGA-DX-A3UD 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A3UE                      TCGA-DX-A3UF 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A48J                      TCGA-DX-A48K 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A48L                      TCGA-DX-A48N 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A48O                      TCGA-DX-A48P 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A48R                      TCGA-DX-A48U 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A48V                      TCGA-DX-A6B9 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A6BA                      TCGA-DX-A6BB 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A6BE                      TCGA-DX-A6BF 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DX-A6BG                      TCGA-DX-A6BH 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A6BK                      TCGA-FX-A2QS 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-FX-A3NJ                      TCGA-FX-A3RE 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-FX-A48G                      TCGA-HB-A2OT 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-HB-A3YV                      TCGA-HB-A43Z 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-HB-A5W3                      TCGA-IE-A4EH 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-IE-A4EI                      TCGA-IE-A4EJ 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-IE-A4EK                      TCGA-IF-A4AJ 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-IF-A4AK                      TCGA-IS-A3K6 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-IS-A3K7                      TCGA-IS-A3K8 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-IS-A3KA                      TCGA-IW-A3M4 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-IW-A3M5                      TCGA-IW-A3M6 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-JV-A5VE                      TCGA-JV-A5VF 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-KF-A41W                      TCGA-LI-A67I 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-MO-A47R                      TCGA-PC-A5DK 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A1KU                      TCGA-DX-A1KW 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DX-A1KX                      TCGA-DX-A1KY 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A1KZ                      TCGA-DX-A1L0 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A1L1                      TCGA-DX-A1L2 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DX-A1L3                      TCGA-DX-A1L4 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A23R                      TCGA-DX-A23T 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A23U                      TCGA-DX-A23V 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DX-A23Y                      TCGA-DX-A23Z 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A240                      TCGA-DX-A2IZ 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DX-A2J0                      TCGA-DX-A2J1 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A2J4                      TCGA-DX-A3LS 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DX-A3LT                      TCGA-DX-A3LU 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A3LW                      TCGA-DX-A3LY 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A3M1                      TCGA-DX-A3U5 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A3U6                      TCGA-DX-A3U7 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DX-A3U8                      TCGA-DX-A3U9 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DX-A3UA                      TCGA-DX-A3UB 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A3UC                      TCGA-DX-A3UD 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A3UE                      TCGA-DX-A3UF 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A48J                      TCGA-DX-A48K 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A48L                      TCGA-DX-A48N 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A48O                      TCGA-DX-A48P 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A48R                      TCGA-DX-A48U 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A48V                      TCGA-DX-A6B9 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A6BA                      TCGA-DX-A6BB 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A6BE                      TCGA-DX-A6BF 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-DX-A6BG                      TCGA-DX-A6BH 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-DX-A6BK                      TCGA-FX-A2QS 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-FX-A3NJ                      TCGA-FX-A3RE 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-FX-A48G                      TCGA-HB-A2OT 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-HB-A3YV                      TCGA-HB-A43Z 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-HB-A5W3                      TCGA-IE-A4EH 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-IE-A4EI                      TCGA-IE-A4EJ 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-IE-A4EK                      TCGA-IF-A4AJ 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-IF-A4AK                      TCGA-IS-A3K6 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-IS-A3K7                      TCGA-IS-A3K8 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-IS-A3KA                      TCGA-IW-A3M4 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-IW-A3M5                      TCGA-IW-A3M6 
  "DEL PEAK 34(22Q13.31) MUTATED"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-JV-A5VE                      TCGA-JV-A5VF 
"DEL PEAK 34(22Q13.31) WILD-TYPE"   "DEL PEAK 34(22Q13.31) MUTATED" 
                     TCGA-KF-A41W                      TCGA-LI-A67I 
  "DEL PEAK 34(22Q13.31) MUTATED" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
                     TCGA-MO-A47R                      TCGA-PC-A5DK 
"DEL PEAK 34(22Q13.31) WILD-TYPE" "DEL PEAK 34(22Q13.31) WILD-TYPE" 
[1] "hr=" "1.6"
D51V2, continuous
D51V3, binary
                                 cls
clus                               0  1
  DEL PEAK 34(22Q13.31) MUTATED   19 13
  DEL PEAK 34(22Q13.31) WILD-TYPE 21 29
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 34(22Q13.31) MUTATED     19   13
  DEL PEAK 34(22Q13.31) WILD-TYPE   21   29
        clus
vv       DEL PEAK 34(22Q13.31) MUTATED DEL PEAK 34(22Q13.31) WILD-TYPE
  FEMALE                            19                              21
  MALE                              13                              29

Clustering(52) Variable = DEL PEAK 35(XP22.32) MUTATION ANALYSIS
D52V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 35(XP22.32) MUTATED   17 10
  DEL PEAK 35(XP22.32) WILD-TYPE 41 14
  DEL PEAK 35(XP22.32) MUTATED DEL PEAK 35(XP22.32) WILD-TYPE 
                            27                             55 
  DEL PEAK 35(XP22.32) MUTATED DEL PEAK 35(XP22.32) WILD-TYPE 
                            10                             14 
$`DEL PEAK 35(XP22.32) MUTATED`
TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A23Y TCGA-DX-A240 TCGA-DX-A2J0 TCGA-DX-A3UA 
       12.85        18.51         6.28        60.30         9.70        10.68 
TCGA-DX-A3UC TCGA-DX-A3UD TCGA-DX-A3UF TCGA-DX-A48J TCGA-DX-A48O TCGA-DX-A48P 
       39.35        28.80        64.14         9.73        27.22        14.96 
TCGA-DX-A48R TCGA-DX-A48U TCGA-DX-A48V TCGA-DX-A6B9 TCGA-DX-A6BA TCGA-FX-A2QS 
       26.47        72.72        25.08        11.47        54.87         0.46 
TCGA-FX-A48G TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IF-A4AJ TCGA-IS-A3K7 
        0.07         4.54        12.62        21.37        25.22       143.41 
TCGA-IW-A3M4 TCGA-JV-A5VF TCGA-LI-A67I 
       73.28         1.05         5.23 

$`DEL PEAK 35(XP22.32) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KX TCGA-DX-A1KZ TCGA-DX-A1L1 TCGA-DX-A1L2 
       14.04         2.04        27.19        24.49        46.68        42.44 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23R TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V 
       31.56        29.85        74.66         5.23        76.37        66.87 
TCGA-DX-A23Z TCGA-DX-A2IZ TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT 
       27.78         8.55        53.26        43.04         9.01        23.08 
TCGA-DX-A3LU TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U6 
       70.49       108.10        17.10        20.02        15.02        17.75 
TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-DX-A3U9 TCGA-DX-A3UB TCGA-DX-A3UE TCGA-DX-A48K 
       42.77         4.50        14.99        44.45        34.88        19.30 
TCGA-DX-A48L TCGA-DX-A48N TCGA-DX-A6BB TCGA-DX-A6BE TCGA-DX-A6BF TCGA-DX-A6BG 
       24.26        12.26        10.78        16.27         2.07         7.33 
TCGA-DX-A6BH TCGA-DX-A6BK TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-HB-A2OT TCGA-HB-A43Z 
        1.68        16.18         0.10         0.07        26.89         4.14 
TCGA-IE-A4EI TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K8 
        8.94         3.22         1.38        31.76        28.21       116.88 
TCGA-IS-A3KA TCGA-IW-A3M5 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-KF-A41W TCGA-MO-A47R 
       13.58         5.88        22.62         6.25        11.70         0.10 
TCGA-PC-A5DK 
       75.48 

  DEL PEAK 35(XP22.32) MUTATED DEL PEAK 35(XP22.32) WILD-TYPE 
                          0.07                           0.07 
  DEL PEAK 35(XP22.32) MUTATED DEL PEAK 35(XP22.32) WILD-TYPE 
                        143.41                         116.88 
  DEL PEAK 35(XP22.32) MUTATED DEL PEAK 35(XP22.32) WILD-TYPE 
                         18.51                          17.75 
[1] "0.1 - 143.4 (18.5)" "0.1 - 116.9 (17.8)"
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"DEL PEAK 35(XP22.32) WILD-TYPE"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 35(XP22.32) WILD-TYPE"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 35(XP22.32) MUTATED" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
  "DEL PEAK 35(XP22.32) MUTATED" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 35(XP22.32) MUTATED" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "DEL PEAK 35(XP22.32) MUTATED" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
  "DEL PEAK 35(XP22.32) MUTATED"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK 35(XP22.32) WILD-TYPE"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
  "DEL PEAK 35(XP22.32) MUTATED" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK 35(XP22.32) MUTATED"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK 35(XP22.32) MUTATED"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
  "DEL PEAK 35(XP22.32) MUTATED"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK 35(XP22.32) MUTATED" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK 35(XP22.32) WILD-TYPE"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 35(XP22.32) MUTATED" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 35(XP22.32) MUTATED" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 35(XP22.32) MUTATED"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 35(XP22.32) WILD-TYPE"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 35(XP22.32) MUTATED" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 35(XP22.32) WILD-TYPE"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 35(XP22.32) WILD-TYPE"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"DEL PEAK 35(XP22.32) WILD-TYPE"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"DEL PEAK 35(XP22.32) WILD-TYPE"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 35(XP22.32) WILD-TYPE"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 35(XP22.32) MUTATED" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
  "DEL PEAK 35(XP22.32) MUTATED" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 35(XP22.32) MUTATED" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "DEL PEAK 35(XP22.32) MUTATED" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
  "DEL PEAK 35(XP22.32) MUTATED"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK 35(XP22.32) WILD-TYPE"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
  "DEL PEAK 35(XP22.32) MUTATED" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK 35(XP22.32) MUTATED"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK 35(XP22.32) MUTATED"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
  "DEL PEAK 35(XP22.32) MUTATED"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK 35(XP22.32) MUTATED" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK 35(XP22.32) WILD-TYPE"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 35(XP22.32) MUTATED" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 35(XP22.32) MUTATED" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 35(XP22.32) MUTATED"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 35(XP22.32) WILD-TYPE"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 35(XP22.32) MUTATED" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 35(XP22.32) WILD-TYPE"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 35(XP22.32) WILD-TYPE"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"DEL PEAK 35(XP22.32) WILD-TYPE"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A1KU                     TCGA-DX-A1KW 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A1KX                     TCGA-DX-A1KY 
"DEL PEAK 35(XP22.32) WILD-TYPE"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-DX-A1KZ                     TCGA-DX-A1L0 
"DEL PEAK 35(XP22.32) WILD-TYPE"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-DX-A1L1                     TCGA-DX-A1L2 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A1L3                     TCGA-DX-A1L4 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A23R                     TCGA-DX-A23T 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A23U                     TCGA-DX-A23V 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A23Y                     TCGA-DX-A23Z 
  "DEL PEAK 35(XP22.32) MUTATED" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A240                     TCGA-DX-A2IZ 
  "DEL PEAK 35(XP22.32) MUTATED" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A2J0                     TCGA-DX-A2J1 
  "DEL PEAK 35(XP22.32) MUTATED" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A2J4                     TCGA-DX-A3LS 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A3LT                     TCGA-DX-A3LU 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A3LW                     TCGA-DX-A3LY 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A3M1                     TCGA-DX-A3U5 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A3U6                     TCGA-DX-A3U7 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A3U8                     TCGA-DX-A3U9 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A3UA                     TCGA-DX-A3UB 
  "DEL PEAK 35(XP22.32) MUTATED" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A3UC                     TCGA-DX-A3UD 
  "DEL PEAK 35(XP22.32) MUTATED"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-DX-A3UE                     TCGA-DX-A3UF 
"DEL PEAK 35(XP22.32) WILD-TYPE"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-DX-A48J                     TCGA-DX-A48K 
  "DEL PEAK 35(XP22.32) MUTATED" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A48L                     TCGA-DX-A48N 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A48O                     TCGA-DX-A48P 
  "DEL PEAK 35(XP22.32) MUTATED"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-DX-A48R                     TCGA-DX-A48U 
  "DEL PEAK 35(XP22.32) MUTATED"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-DX-A48V                     TCGA-DX-A6B9 
  "DEL PEAK 35(XP22.32) MUTATED"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-DX-A6BA                     TCGA-DX-A6BB 
  "DEL PEAK 35(XP22.32) MUTATED" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A6BE                     TCGA-DX-A6BF 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A6BG                     TCGA-DX-A6BH 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-DX-A6BK                     TCGA-FX-A2QS 
"DEL PEAK 35(XP22.32) WILD-TYPE"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-FX-A3NJ                     TCGA-FX-A3RE 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-FX-A48G                     TCGA-HB-A2OT 
  "DEL PEAK 35(XP22.32) MUTATED" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-HB-A3YV                     TCGA-HB-A43Z 
  "DEL PEAK 35(XP22.32) MUTATED" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-HB-A5W3                     TCGA-IE-A4EH 
  "DEL PEAK 35(XP22.32) MUTATED"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-IE-A4EI                     TCGA-IE-A4EJ 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-IE-A4EK                     TCGA-IF-A4AJ 
"DEL PEAK 35(XP22.32) WILD-TYPE"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-IF-A4AK                     TCGA-IS-A3K6 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-IS-A3K7                     TCGA-IS-A3K8 
  "DEL PEAK 35(XP22.32) MUTATED" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-IS-A3KA                     TCGA-IW-A3M4 
"DEL PEAK 35(XP22.32) WILD-TYPE"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-IW-A3M5                     TCGA-IW-A3M6 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
                    TCGA-JV-A5VE                     TCGA-JV-A5VF 
"DEL PEAK 35(XP22.32) WILD-TYPE"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-KF-A41W                     TCGA-LI-A67I 
"DEL PEAK 35(XP22.32) WILD-TYPE"   "DEL PEAK 35(XP22.32) MUTATED" 
                    TCGA-MO-A47R                     TCGA-PC-A5DK 
"DEL PEAK 35(XP22.32) WILD-TYPE" "DEL PEAK 35(XP22.32) WILD-TYPE" 
[1] "hr=" "1.5"
D52V2, continuous
D52V3, binary
                                cls
clus                              0  1
  DEL PEAK 35(XP22.32) MUTATED   15 12
  DEL PEAK 35(XP22.32) WILD-TYPE 25 30
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 35(XP22.32) MUTATED     15   12
  DEL PEAK 35(XP22.32) WILD-TYPE   25   30
        clus
vv       DEL PEAK 35(XP22.32) MUTATED DEL PEAK 35(XP22.32) WILD-TYPE
  FEMALE                           15                             25
  MALE                             12                             30

Clustering(53) Variable = DEL PEAK 36(XQ21.1) MUTATION ANALYSIS
D53V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 36(XQ21.1) MUTATED   32  9
  DEL PEAK 36(XQ21.1) WILD-TYPE 26 15
  DEL PEAK 36(XQ21.1) MUTATED DEL PEAK 36(XQ21.1) WILD-TYPE 
                           41                            41 
  DEL PEAK 36(XQ21.1) MUTATED DEL PEAK 36(XQ21.1) WILD-TYPE 
                            9                            15 
$`DEL PEAK 36(XQ21.1) MUTATED`
TCGA-DX-A1KX TCGA-DX-A1L2 TCGA-DX-A23R TCGA-DX-A240 TCGA-DX-A2J0 TCGA-DX-A3LW 
       27.19        42.44        74.66        60.30         9.70       108.10 
TCGA-DX-A3M1 TCGA-DX-A3U5 TCGA-DX-A3U9 TCGA-DX-A3UA TCGA-DX-A3UC TCGA-DX-A3UD 
       20.02        15.02        14.99        10.68        39.35        28.80 
TCGA-DX-A3UE TCGA-DX-A3UF TCGA-DX-A48J TCGA-DX-A48K TCGA-DX-A48L TCGA-DX-A48N 
       34.88        64.14         9.73        19.30        24.26        12.26 
TCGA-DX-A48O TCGA-DX-A48P TCGA-DX-A48R TCGA-DX-A48U TCGA-DX-A48V TCGA-DX-A6B9 
       27.22        14.96        26.47        72.72        25.08        11.47 
TCGA-DX-A6BA TCGA-DX-A6BB TCGA-FX-A2QS TCGA-FX-A3RE TCGA-FX-A48G TCGA-HB-A2OT 
       54.87        10.78         0.46         0.07         0.07        26.89 
TCGA-HB-A3YV TCGA-HB-A5W3 TCGA-IE-A4EH TCGA-IE-A4EJ TCGA-IE-A4EK TCGA-IF-A4AJ 
        4.54        12.62        21.37         3.22         1.38        25.22 
TCGA-IS-A3K7 TCGA-IW-A3M4 TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-LI-A67I 
      143.41        73.28        22.62         6.25         5.23 

$`DEL PEAK 36(XQ21.1) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KY TCGA-DX-A1KZ TCGA-DX-A1L0 TCGA-DX-A1L1 
       14.04         2.04        12.85        24.49        18.51        46.68 
TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y 
       31.56        29.85         5.23        76.37        66.87         6.28 
TCGA-DX-A23Z TCGA-DX-A2IZ TCGA-DX-A2J1 TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT 
       27.78         8.55        53.26        43.04         9.01        23.08 
TCGA-DX-A3LU TCGA-DX-A3LY TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-DX-A3UB 
       70.49        17.10        17.75        42.77         4.50        44.45 
TCGA-DX-A6BE TCGA-DX-A6BF TCGA-DX-A6BG TCGA-DX-A6BH TCGA-DX-A6BK TCGA-FX-A3NJ 
       16.27         2.07         7.33         1.68        16.18         0.10 
TCGA-HB-A43Z TCGA-IE-A4EI TCGA-IF-A4AK TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IS-A3KA 
        4.14         8.94        31.76        28.21       116.88        13.58 
TCGA-IW-A3M5 TCGA-JV-A5VF TCGA-KF-A41W TCGA-MO-A47R TCGA-PC-A5DK 
        5.88         1.05        11.70         0.10        75.48 

  DEL PEAK 36(XQ21.1) MUTATED DEL PEAK 36(XQ21.1) WILD-TYPE 
                         0.07                          0.10 
  DEL PEAK 36(XQ21.1) MUTATED DEL PEAK 36(XQ21.1) WILD-TYPE 
                       143.41                        116.88 
  DEL PEAK 36(XQ21.1) MUTATED DEL PEAK 36(XQ21.1) WILD-TYPE 
                        21.37                         16.27 
[1] "0.1 - 143.4 (21.4)" "0.1 - 116.9 (16.3)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 36(XQ21.1) MUTATED" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 36(XQ21.1) WILD-TYPE"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK 36(XQ21.1) MUTATED" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
  "DEL PEAK 36(XQ21.1) MUTATED" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
  "DEL PEAK 36(XQ21.1) MUTATED" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 36(XQ21.1) MUTATED" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK 36(XQ21.1) WILD-TYPE"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "DEL PEAK 36(XQ21.1) MUTATED" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"DEL PEAK 36(XQ21.1) WILD-TYPE"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 36(XQ21.1) WILD-TYPE"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 36(XQ21.1) MUTATED" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 36(XQ21.1) WILD-TYPE"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 36(XQ21.1) MUTATED" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 36(XQ21.1) WILD-TYPE"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK 36(XQ21.1) WILD-TYPE"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK 36(XQ21.1) MUTATED" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"DEL PEAK 36(XQ21.1) WILD-TYPE"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 36(XQ21.1) MUTATED" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 36(XQ21.1) WILD-TYPE"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK 36(XQ21.1) MUTATED" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
  "DEL PEAK 36(XQ21.1) MUTATED" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
  "DEL PEAK 36(XQ21.1) MUTATED" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 36(XQ21.1) MUTATED" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK 36(XQ21.1) WILD-TYPE"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "DEL PEAK 36(XQ21.1) MUTATED" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"DEL PEAK 36(XQ21.1) WILD-TYPE"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 36(XQ21.1) WILD-TYPE"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 36(XQ21.1) MUTATED" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 36(XQ21.1) WILD-TYPE"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 36(XQ21.1) MUTATED" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 36(XQ21.1) WILD-TYPE"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK 36(XQ21.1) WILD-TYPE"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK 36(XQ21.1) MUTATED" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"DEL PEAK 36(XQ21.1) WILD-TYPE"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 36(XQ21.1) MUTATED" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
"DEL PEAK 36(XQ21.1) WILD-TYPE"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK 36(XQ21.1) MUTATED" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
  "DEL PEAK 36(XQ21.1) MUTATED" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
  "DEL PEAK 36(XQ21.1) MUTATED" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 36(XQ21.1) MUTATED" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK 36(XQ21.1) WILD-TYPE"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "DEL PEAK 36(XQ21.1) MUTATED" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"DEL PEAK 36(XQ21.1) WILD-TYPE"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 36(XQ21.1) WILD-TYPE"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 36(XQ21.1) MUTATED" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 36(XQ21.1) WILD-TYPE"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
  "DEL PEAK 36(XQ21.1) MUTATED"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 36(XQ21.1) MUTATED" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
"DEL PEAK 36(XQ21.1) WILD-TYPE"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK 36(XQ21.1) WILD-TYPE"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK 36(XQ21.1) MUTATED" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"DEL PEAK 36(XQ21.1) WILD-TYPE"   "DEL PEAK 36(XQ21.1) MUTATED" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK 36(XQ21.1) WILD-TYPE" "DEL PEAK 36(XQ21.1) WILD-TYPE" 
[1] "hr=" "1.8"
D53V2, continuous
D53V3, binary
                               cls
clus                             0  1
  DEL PEAK 36(XQ21.1) MUTATED   23 18
  DEL PEAK 36(XQ21.1) WILD-TYPE 17 24
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 36(XQ21.1) MUTATED     23   18
  DEL PEAK 36(XQ21.1) WILD-TYPE   17   24
        clus
vv       DEL PEAK 36(XQ21.1) MUTATED DEL PEAK 36(XQ21.1) WILD-TYPE
  FEMALE                          23                            17
  MALE                            18                            24

Clustering(54) Variable = DEL PEAK 37(XQ27.1) MUTATION ANALYSIS
D54V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 37(XQ27.1) MUTATED   27 12
  DEL PEAK 37(XQ27.1) WILD-TYPE 31 12
  DEL PEAK 37(XQ27.1) MUTATED DEL PEAK 37(XQ27.1) WILD-TYPE 
                           39                            43 
  DEL PEAK 37(XQ27.1) MUTATED DEL PEAK 37(XQ27.1) WILD-TYPE 
                           12                            12 
$`DEL PEAK 37(XQ27.1) MUTATED`
TCGA-DX-A1KX TCGA-DX-A1KY TCGA-DX-A1L0 TCGA-DX-A1L1 TCGA-DX-A1L2 TCGA-DX-A23R 
       27.19        12.85        18.51        46.68        42.44        74.66 
TCGA-DX-A240 TCGA-DX-A2J0 TCGA-DX-A3LW TCGA-DX-A3LY TCGA-DX-A3U9 TCGA-DX-A3UA 
       60.30         9.70       108.10        17.10        14.99        10.68 
TCGA-DX-A3UC TCGA-DX-A3UD TCGA-DX-A3UE TCGA-DX-A3UF TCGA-DX-A48J TCGA-DX-A48O 
       39.35        28.80        34.88        64.14         9.73        27.22 
TCGA-DX-A48P TCGA-DX-A48R TCGA-DX-A48U TCGA-DX-A48V TCGA-DX-A6B9 TCGA-DX-A6BA 
       14.96        26.47        72.72        25.08        11.47        54.87 
TCGA-DX-A6BB TCGA-FX-A48G TCGA-HB-A2OT TCGA-HB-A3YV TCGA-HB-A43Z TCGA-HB-A5W3 
       10.78         0.07        26.89         4.54         4.14        12.62 
TCGA-IE-A4EH TCGA-IE-A4EJ TCGA-IF-A4AJ TCGA-IS-A3K7 TCGA-IS-A3KA TCGA-IW-A3M4 
       21.37         3.22        25.22       143.41        13.58        73.28 
TCGA-IW-A3M6 TCGA-JV-A5VE TCGA-JV-A5VF 
       22.62         6.25         1.05 

$`DEL PEAK 37(XQ27.1) WILD-TYPE`
TCGA-DX-A1KU TCGA-DX-A1KW TCGA-DX-A1KZ TCGA-DX-A1L3 TCGA-DX-A1L4 TCGA-DX-A23T 
       14.04         2.04        24.49        31.56        29.85         5.23 
TCGA-DX-A23U TCGA-DX-A23V TCGA-DX-A23Y TCGA-DX-A23Z TCGA-DX-A2IZ TCGA-DX-A2J1 
       76.37        66.87         6.28        27.78         8.55        53.26 
TCGA-DX-A2J4 TCGA-DX-A3LS TCGA-DX-A3LT TCGA-DX-A3LU TCGA-DX-A3M1 TCGA-DX-A3U5 
       43.04         9.01        23.08        70.49        20.02        15.02 
TCGA-DX-A3U6 TCGA-DX-A3U7 TCGA-DX-A3U8 TCGA-DX-A3UB TCGA-DX-A48K TCGA-DX-A48L 
       17.75        42.77         4.50        44.45        19.30        24.26 
TCGA-DX-A48N TCGA-DX-A6BE TCGA-DX-A6BF TCGA-DX-A6BG TCGA-DX-A6BH TCGA-DX-A6BK 
       12.26        16.27         2.07         7.33         1.68        16.18 
TCGA-FX-A2QS TCGA-FX-A3NJ TCGA-FX-A3RE TCGA-IE-A4EI TCGA-IE-A4EK TCGA-IF-A4AK 
        0.46         0.10         0.07         8.94         1.38        31.76 
TCGA-IS-A3K6 TCGA-IS-A3K8 TCGA-IW-A3M5 TCGA-KF-A41W TCGA-LI-A67I TCGA-MO-A47R 
       28.21       116.88         5.88        11.70         5.23         0.10 
TCGA-PC-A5DK 
       75.48 

  DEL PEAK 37(XQ27.1) MUTATED DEL PEAK 37(XQ27.1) WILD-TYPE 
                         0.07                          0.07 
  DEL PEAK 37(XQ27.1) MUTATED DEL PEAK 37(XQ27.1) WILD-TYPE 
                       143.41                        116.88 
  DEL PEAK 37(XQ27.1) MUTATED DEL PEAK 37(XQ27.1) WILD-TYPE 
                        22.62                         16.18 
[1] "0.1 - 143.4 (22.6)" "0.1 - 116.9 (16.2)"
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK 37(XQ27.1) WILD-TYPE"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK 37(XQ27.1) MUTATED" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
  "DEL PEAK 37(XQ27.1) MUTATED" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
  "DEL PEAK 37(XQ27.1) MUTATED" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK 37(XQ27.1) WILD-TYPE"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "DEL PEAK 37(XQ27.1) MUTATED" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
  "DEL PEAK 37(XQ27.1) MUTATED" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 37(XQ27.1) WILD-TYPE"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 37(XQ27.1) WILD-TYPE"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 37(XQ27.1) MUTATED" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK 37(XQ27.1) WILD-TYPE"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK 37(XQ27.1) WILD-TYPE"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK 37(XQ27.1) MUTATED" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
  "DEL PEAK 37(XQ27.1) MUTATED" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
  "DEL PEAK 37(XQ27.1) MUTATED" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK 37(XQ27.1) WILD-TYPE"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "DEL PEAK 37(XQ27.1) MUTATED" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
  "DEL PEAK 37(XQ27.1) MUTATED" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 37(XQ27.1) WILD-TYPE"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 37(XQ27.1) WILD-TYPE"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 37(XQ27.1) MUTATED" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK 37(XQ27.1) WILD-TYPE"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A1KU                    TCGA-DX-A1KW 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A1KX                    TCGA-DX-A1KY 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A1KZ                    TCGA-DX-A1L0 
"DEL PEAK 37(XQ27.1) WILD-TYPE"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A1L1                    TCGA-DX-A1L2 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A1L3                    TCGA-DX-A1L4 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A23R                    TCGA-DX-A23T 
  "DEL PEAK 37(XQ27.1) MUTATED" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A23U                    TCGA-DX-A23V 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A23Y                    TCGA-DX-A23Z 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A240                    TCGA-DX-A2IZ 
  "DEL PEAK 37(XQ27.1) MUTATED" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A2J0                    TCGA-DX-A2J1 
  "DEL PEAK 37(XQ27.1) MUTATED" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A2J4                    TCGA-DX-A3LS 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A3LT                    TCGA-DX-A3LU 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A3LW                    TCGA-DX-A3LY 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A3M1                    TCGA-DX-A3U5 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A3U6                    TCGA-DX-A3U7 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A3U8                    TCGA-DX-A3U9 
"DEL PEAK 37(XQ27.1) WILD-TYPE"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A3UA                    TCGA-DX-A3UB 
  "DEL PEAK 37(XQ27.1) MUTATED" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A3UC                    TCGA-DX-A3UD 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A3UE                    TCGA-DX-A3UF 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A48J                    TCGA-DX-A48K 
  "DEL PEAK 37(XQ27.1) MUTATED" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A48L                    TCGA-DX-A48N 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A48O                    TCGA-DX-A48P 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A48R                    TCGA-DX-A48U 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A48V                    TCGA-DX-A6B9 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A6BA                    TCGA-DX-A6BB 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-DX-A6BE                    TCGA-DX-A6BF 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A6BG                    TCGA-DX-A6BH 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-DX-A6BK                    TCGA-FX-A2QS 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-FX-A3NJ                    TCGA-FX-A3RE 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-FX-A48G                    TCGA-HB-A2OT 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-HB-A3YV                    TCGA-HB-A43Z 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-HB-A5W3                    TCGA-IE-A4EH 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-IE-A4EI                    TCGA-IE-A4EJ 
"DEL PEAK 37(XQ27.1) WILD-TYPE"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-IE-A4EK                    TCGA-IF-A4AJ 
"DEL PEAK 37(XQ27.1) WILD-TYPE"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-IF-A4AK                    TCGA-IS-A3K6 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-IS-A3K7                    TCGA-IS-A3K8 
  "DEL PEAK 37(XQ27.1) MUTATED" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-IS-A3KA                    TCGA-IW-A3M4 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-IW-A3M5                    TCGA-IW-A3M6 
"DEL PEAK 37(XQ27.1) WILD-TYPE"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-JV-A5VE                    TCGA-JV-A5VF 
  "DEL PEAK 37(XQ27.1) MUTATED"   "DEL PEAK 37(XQ27.1) MUTATED" 
                   TCGA-KF-A41W                    TCGA-LI-A67I 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
                   TCGA-MO-A47R                    TCGA-PC-A5DK 
"DEL PEAK 37(XQ27.1) WILD-TYPE" "DEL PEAK 37(XQ27.1) WILD-TYPE" 
[1] "hr=" "1.1"
D54V2, continuous
D54V3, binary
                               cls
clus                             0  1
  DEL PEAK 37(XQ27.1) MUTATED   22 17
  DEL PEAK 37(XQ27.1) WILD-TYPE 18 25
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 37(XQ27.1) MUTATED     22   17
  DEL PEAK 37(XQ27.1) WILD-TYPE   18   25
        clus
vv       DEL PEAK 37(XQ27.1) MUTATED DEL PEAK 37(XQ27.1) WILD-TYPE
  FEMALE                          22                            18
  MALE                            17                            25
> q(save="no")
