Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-D3-A1Q7-06A-11D-A18Z-02	TCGA-D3-A1Q8-06A-11D-A18Z-02	TCGA-D3-A1Q9-06A-11D-A18Z-02	TCGA-D3-A1QB-06A-11D-A18Z-02	TCGA-D3-A2J6-06A-11D-A18Z-02	TCGA-D3-A2JC-06A-11D-A18Z-02	TCGA-D3-A2JD-06A-11D-A18Z-02	TCGA-D3-A2JP-06A-11D-A18Z-02	TCGA-D3-A3C3-06A-12D-A18Z-02	TCGA-D3-A3C8-06A-12D-A18Z-02	TCGA-D3-A3CC-06A-11D-A18Z-02	TCGA-D3-A3CE-06A-11D-A18Z-02	TCGA-D9-A148-06A-11D-A18Z-02	TCGA-D9-A1JW-06A-11D-A18Z-02	TCGA-D9-A1JX-06A-11D-A18Z-02	TCGA-DA-A1HW-06A-11D-A18Z-02	TCGA-DA-A1HY-06A-11D-A18Z-02	TCGA-DA-A1I2-06A-21D-A18Z-02	TCGA-DA-A1I5-06A-11D-A18Y-02	TCGA-DA-A1I7-06A-22D-A18Y-02	TCGA-DA-A1I8-06A-11D-A18Y-02	TCGA-DA-A1IC-06A-11D-A18Y-02	TCGA-EE-A17X-06A-11D-A18Y-02	TCGA-EE-A20H-06A-11D-A18Y-02	TCGA-EE-A29B-06A-11D-A18Y-02	TCGA-EE-A29C-06A-21D-A18Y-02	TCGA-EE-A29D-06A-11D-A18Y-02	TCGA-EE-A29E-06A-11D-A18Y-02	TCGA-EE-A29H-06A-12D-A18Y-02	TCGA-EE-A29N-06A-12D-A18Y-02	TCGA-EE-A29P-06A-11D-A18Y-02	TCGA-EE-A29Q-06A-11D-A18Y-02	TCGA-EE-A29R-06A-11D-A18Y-02	TCGA-EE-A29S-06A-11D-A18Y-02	TCGA-EE-A29T-06A-11D-A18Y-02	TCGA-EE-A29V-06A-12D-A18Y-02	TCGA-EE-A2A1-06A-11D-A18Y-02	TCGA-EE-A2A6-06A-11D-A18Y-02	TCGA-EE-A2GB-06A-11D-A18Y-02	TCGA-EE-A2GC-06A-11D-A18Y-02	TCGA-EE-A2GP-06A-11D-A18Y-02	TCGA-EE-A2GR-06A-11D-A18Y-02	TCGA-EE-A2GS-06A-12D-A18Y-02	TCGA-EE-A2GT-06A-12D-A18Y-02	TCGA-EE-A2M5-06A-12D-A18Y-02	TCGA-EE-A2M6-06A-12D-A18Y-02	TCGA-EE-A2M7-06A-11D-A18Y-02	TCGA-EE-A2MC-06A-12D-A18Y-02	TCGA-EE-A2MD-06A-11D-A18Y-02	TCGA-EE-A2ME-06A-11D-A18Y-02	TCGA-EE-A2MG-06A-11D-A18Y-02	TCGA-EE-A2MH-06A-11D-A18Y-02	TCGA-EE-A2MI-06A-11D-A18Y-02	TCGA-EE-A2MJ-06A-11D-A18Y-02	TCGA-EE-A2ML-06A-11D-A18Y-02	TCGA-EE-A2MN-06A-11D-A18Y-02	TCGA-EE-A2MP-06A-11D-A18Y-02	TCGA-EE-A2MQ-06A-11D-A18Y-02	TCGA-EE-A2MS-06A-11D-A18Y-02	TCGA-EE-A2MT-06A-11D-A18Y-02	TCGA-ER-A193-06A-12D-A18Y-02	TCGA-ER-A197-06A-32D-A18Y-02	TCGA-ER-A199-06A-11D-A18Y-02	TCGA-ER-A19A-06A-21D-A18Y-02	TCGA-ER-A19D-06A-11D-A18Y-02	TCGA-ER-A19E-06A-11D-A18Y-02	TCGA-ER-A19L-06A-12D-A18Y-02	TCGA-ER-A19N-06A-11D-A18Y-02	TCGA-ER-A19O-06A-11D-A18Y-02	TCGA-ER-A19Q-06A-11D-A18Y-02	TCGA-ER-A19T-06A-11D-A18Z-02	TCGA-ER-A1A1-06A-11D-A18Y-02	TCGA-ER-A2NC-06A-11D-A18Y-02	TCGA-ER-A2NF-06A-11D-A18Z-02	TCGA-FS-A1YW-06A-11D-A18Y-02	TCGA-FS-A1YX-06A-11D-A18Y-02	TCGA-FS-A1YY-06A-11D-A18Y-02	TCGA-FS-A1Z0-06A-11D-A18Y-02	TCGA-FS-A1Z3-06A-11D-A18Y-02	TCGA-FS-A1Z4-06A-11D-A18Y-02	TCGA-FS-A1Z7-06A-11D-A18Y-02	TCGA-FS-A1ZA-06A-11D-A18Y-02	TCGA-FS-A1ZB-06A-12D-A18Y-02	TCGA-FS-A1ZC-06A-11D-A18Y-02	TCGA-FS-A1ZD-06A-11D-A18Y-02	TCGA-FS-A1ZE-06A-11D-A18Y-02	TCGA-FS-A1ZF-06A-12D-A18Y-02	TCGA-FS-A1ZG-06A-11D-A18Y-02	TCGA-FS-A1ZH-06A-11D-A18Y-02	TCGA-FS-A1ZJ-06A-12D-A18Y-02	TCGA-FS-A1ZK-06A-11D-A18Y-02	TCGA-FS-A1ZM-06A-12D-A18Y-02	TCGA-FS-A1ZP-06A-11D-A18Y-02	TCGA-FS-A1ZQ-06A-11D-A18Y-02	TCGA-FS-A1ZR-06A-21D-A18Y-02	TCGA-FS-A1ZS-06A-12D-A18Y-02	TCGA-FS-A1ZT-06A-11D-A18Y-02	TCGA-FS-A1ZW-06A-12D-A18Y-02	TCGA-FS-A1ZY-06A-11D-A18Y-02	TCGA-FS-A1ZZ-06A-11D-A18Y-02	TCGA-GN-A261-06A-12D-A18Y-02	TCGA-GN-A265-06A-21D-A18Y-02	TCGA-GN-A266-06A-11D-A18Y-02	
Amplification Peak 1	1p12   	chr1:119726941-150032773(probes 620:636)  	chr1:120071973-150032772(probes 632:635)  	chr1:117886404-150037293(probes 577:638)  	0.004072	  0.004072		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	2	0	0	1	0	2	2	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	2	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	
Amplification Peak 2	3p13   	chr3:69568300-70340162(probes 2234:2267)    	chr3:69884902-69894897(probes 2247:2248)    	chr3:69410087-72891576(probes 2231:2279)    	0.0074385	 0.0074385		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	2	0	0	2	0	0	0	0	2	1	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	
Amplification Peak 3	5p15.31	chr5:8145603-10301016(probes 3992:4053)      	chr5:9292705-9295704(probes 4023:4024)        	chr5:9292705-9451667(probes 4023:4030)        	0.15635	   0.15635		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	2	0	0	2	0	1	0	0	2	0	2	1	0	0	0	1	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak 4	7p22.2 	chr7:1-8646788(probes 6357:6459)               	chr7:3580242-3593516(probes 6410:6413)        	chr7:3298188-5388358(probes 6409:6425)        	0.081588	  0.081588		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	1	2	1	0	0	0	0	1	0	1	0	2	1	1	1	2	2	0	2	0	1	2	0	0	1	2	2	0	0	2	0	0	2	2	0	1	0	0	0	1	0	1	0	0	0	0	0	0	1	0	2	1	1	2	0	0	0	0	0	0	2	0	0	1	0	1	0	0	0	0	0	0	0	2	0	2	0	0	1	1	2	0	0	1	0	2	2	0	0	1	0	0	0	2	2	0	0	1	
Amplification Peak 5	11q13.3	chr11:68594424-71666457(probes 9568:9637)  	chr11:69788613-70074236(probes 9587:9594)  	chr11:69152738-70528368(probes 9581:9607)  	0.11498	   0.11498		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	2	0	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	2	0	0	2	1	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	2	0	0	0	0	1	2	0	0	0	0	0	0	
Amplification Peak 6	12q15  	chr12:68983694-69478370(probes 10919:10930)	chr12:69125534-69373351(probes 10924:10929)	chr12:68766626-70406160(probes 10912:10942)	0.012434	  0.012434		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	
Amplification Peak 7	20q13.2	chr20:47396006-63025520(probes 14331:14513)	chr20:50046847-50269673(probes 14356:14359)	chr20:50046847-50457747(probes 14356:14362)	0.19463	   0.19463		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	1	0	0	2	1	1	1	0	0	0	1	0	1	0	0	1	0	2	0	0	0	1	0	0	2	2	0	0	1	0	1	0	1	0	2	2	1	0	2	0	0	0	1	1	0	1	0	0	0	2	0	0	0	0	2	0	2	1	1	0	0	0	0	2	2	0	0	2	1	0	2	0	0	0	0	0	0	1	1	1	0	1	1	2	0	1	0	2	1	1	0	0	0	1	2	0	2	0	0	0	0	
Amplification Peak 8	22q13.2	chr22:40441512-42059356(probes 14950:15006)	chr22:41641728-41752947(probes 14988:14991)	chr22:40441513-42080423(probes 14951:15008)	0.026049	  0.026049		0: t<0.3; 1: 0.3<t< 0.9; 2: t>0.9	0	0	0	0	0	2	0	1	0	0	0	0	2	0	1	0	0	0	0	1	1	0	0	1	0	0	0	0	0	1	0	0	1	0	0	0	0	2	1	0	0	0	0	0	0	2	0	0	0	2	0	0	0	1	0	2	0	2	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	2	0	0	0	0	1	0	0	2	2	0	2	1	0	2	1	0	0	0	1	1	0	2	0	0	1	0	
Deletion Peak 1	1p36.31 	chr1:1-9528391(probes 1:51)                         	chr1:5457034-6270931(probes 29:33)                	chr1:5457034-6344168(probes 29:36)             	0.1634	     0.1634		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	0	1	0	0	0	2	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 2	4q34.3  	chr4:182105085-182565336(probes 3737:3772)    	chr4:182183397-182197911(probes 3750:3755)    	chr4:182114198-182294989(probes 3740:3758) 	0.11077	    0.11077		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	2	0	0	0	0	0	0	0	1	0	1	0	0	2	1	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	1	0	2	1	1	1	2	1	0	0	0	0	0	0	0	0	0	0	0	1	
Deletion Peak 3	9p21.3  	chr9:21946194-21977643(probes 8263:8274)        	chr9:21968782-21969800(probes 8268:8269)        	chr9:20820491-25036605(probes 8190:8376)     	1.5461e-60	 9.4529e-23		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	0	0	1	1	0	1	1	0	1	2	1	0	2	1	1	2	1	1	1	1	2	1	0	1	2	1	2	1	1	2	2	1	1	1	0	1	1	1	1	2	2	0	1	1	1	0	1	0	0	1	1	0	2	1	0	0	1	0	1	1	0	0	1	1	1	1	1	1	1	0	2	0	1	2	1	0	2	0	1	2	1	2	2	1	2	1	1	2	1	1	0	1	2	2	1	1	2	0	0	1	0	
Deletion Peak 4	9p21.3  	chr9:21975057-22009600(probes 8275:8284)        	chr9:21987216-21989244(probes 8278:8279)        	chr9:20820491-25036605(probes 8190:8376)     	4.6329e-60	 1.8582e-17		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	0	1	0	0	1	1	0	1	1	0	0	2	1	0	2	1	2	2	1	1	1	1	2	1	0	1	2	1	2	1	1	2	2	1	1	1	0	1	1	1	1	2	2	0	1	1	0	0	1	0	0	1	1	0	2	1	0	0	1	0	1	1	0	0	1	1	1	1	1	1	1	0	2	0	1	2	1	2	2	0	1	2	1	2	2	1	2	1	1	2	1	1	0	1	2	2	1	1	2	0	0	1	0	
Deletion Peak 5	10q23.31	chr10:89609324-89919188(probes 9115:9128)      	chr10:89646947-89704494(probes 9118:9120)      	chr10:89622617-89705495(probes 9116:9123)   	0.13031	    0.13031		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	1	2	0	0	1	1	1	0	0	2	1	1	0	2	1	0	1	1	1	1	0	0	1	0	0	0	0	1	0	1	0	0	0	1	0	0	1	1	1	1	0	1	0	0	1	1	0	1	0	0	1	1	0	0	0	1	0	0	0	1	0	0	0	1	1	1	0	0	0	1	0	1	0	0	1	1	0	1	0	1	1	0	1	1	0	1	0	1	1	1	1	0	1	2	0	0	0	1	0	0	0	1	
Deletion Peak 6	11q23.3 	chr11:105910449-135006516(probes 10094:10298)	chr11:116879492-118610638(probes 10169:10184)	chr11:92727674-135006516(probes 9988:10298)	1.4059e-05	 1.4059e-05		0: t>-0.3; 1: -0.3>t> -1.3; 2: t< -1.3	1	0	1	1	1	1	1	0	0	0	0	0	1	1	1	1	0	0	1	0	1	0	0	1	0	1	1	0	1	0	0	1	1	1	1	1	0	0	1	1	0	1	0	0	0	0	1	1	1	0	0	0	0	0	1	1	1	0	1	1	0	1	0	0	1	0	1	1	1	1	1	0	0	1	0	0	0	1	1	0	1	1	1	0	0	1	1	0	1	1	1	0	0	1	0	0	1	0	1	1	0	0	1	
Amplification Peak 1 - CN values	1p12   	chr1:119726941-150032773(probes 620:636)  	chr1:120071973-150032772(probes 632:635)  	chr1:117886404-150037293(probes 577:638)  	0.004072	  0.004072		Actual Copy Change Given	0.0095047	0.016195	-0.65094	0.012811	5.6136	0.35269	0.30532	-0.003068	0.0069542	0.02206	0.088735	-0.21885	-0.011138	-0.0049967	0	0.056487	0.02025	0.099636	0	-0.44128	-0.31422	-0.006988	0.021621	-0.68472	-0.0017723	0.58152	0.84943	0.3411	0.00017269	-0.060347	-0.026394	0.037261	-0.31705	0.015856	-0.34232	2.5787	0.026172	-0.00061988	0.53896	-0.018259	1.1174	6	0.0052879	0.0063041	-0.019075	-0.21053	-0.30839	-0.0093854	0.6277	-0.01768	0.065315	-0.0011885	6	0.20033	-0.0091442	0.0043066	-0.22173	0.80264	-0.57141	-0.0072904	-0.62869	-0.10915	0.022466	0.024375	1.2798	1.1987	0.052391	-0.0048025	-0.0038123	0.0053497	0.53426	0	0.24997	-0.0066831	0.0048448	0.17892	0.0011993	-0.22353	0.012715	-0.00011879	-0.24261	-0.77823	0.52821	0.048593	-0.015396	0.0026553	0.017059	-0.03088	0.23395	-0.59447	0.07116	0.02657	-0.002453	0.028345	0	0	-0.29339	0.094825	-0.022092	0.0068877	-0.0079473	0.29121	0.46996	
Amplification Peak 2 - CN values	3p13   	chr3:69568300-70340162(probes 2234:2267)    	chr3:69884902-69894897(probes 2247:2248)    	chr3:69410087-72891576(probes 2231:2279)    	0.0074385	 0.0074385		Actual Copy Change Given	-0.13718	0.014792	5.5221	-0.0097966	0	1.3703	0.28005	-0.0015447	-0.0031227	-0.016229	1.2057	0.36302	0.063436	0.012239	0.025615	2.1504	-0.76284	-0.5348	2.1693	-0.43413	0.029603	0.017526	0.0044049	-0.67932	0.04455	-0.10593	0.026786	0.005959	4.9583	0.055324	-0.02954	0.075531	0.58929	-0.00097496	0.66106	0.022283	0.023377	0.055513	-0.013827	0.13248	0.40128	0.086152	0.036306	-0.0098925	0.227	3.3909	-0.23297	0.015575	0.0075543	0.0094312	0.1115	0.056698	0.0087085	-0.00019436	0.029629	-0.0084907	0.24079	0.013945	0	0.0080135	0.015373	0.0625	0.028151	0.028501	0.031134	0.11598	0.025509	0.024247	0.026148	0.012543	-0.52318	-0.0059363	-0.012809	0.00094007	3.8666e-05	-0.63616	0.0010741	0.13308	0	0.20239	0.0049433	0.047799	0.014068	0.0022039	-0.014544	0.0031527	-0.026517	0.027167	0.0087254	0.039723	0.07538	-0.34693	0.02038	-0.71243	0.0059792	-0.013045	0.077573	0.12029	0.012523	0.0075396	0.0067828	2.3175	0.36182	
Amplification Peak 3 - CN values	5p15.31	chr5:8145603-10301016(probes 3992:4053)      	chr5:9292705-9295704(probes 4023:4024)        	chr5:9292705-9451667(probes 4023:4030)        	0.15635	   0.15635		Actual Copy Change Given	0	0.010593	3.1608	0.0042652	0.032304	6	-0.32551	0.44398	-0.021216	0	2.015	-0.19374	1.274	0.79322	-0.0083597	-0.23263	0	0.52325	-0.5979	-0.024795	0.017091	0.00020188	-0.91143	1.0305	-0.02057	-0.43149	0.057266	0.38468	-0.023878	-0.011024	-0.049989	-0.067943	0	-0.028714	1.0026	0.011611	0.023747	-0.019687	-0.13889	-0.075788	-0.082279	-0.45896	0.019411	-0.035104	0.0089188	0.54769	0.035511	0.00082194	-0.0071509	0.0046599	0.070853	0.0064053	0.013005	-0.028141	0.0069619	-0.010959	0.57078	-0.79541	0.39473	0.0015157	0.01076	0.26188	-0.10536	-0.019828	-0.017666	-0.018769	-0.0058776	0.25533	0.47273	0.59426	0.36461	0.014576	0.001215	0.0049937	-0.017898	0.13523	0.0017437	0	-0.040391	-0.026132	-0.022281	0.030065	-0.037346	-0.0036402	-0.60918	0.91271	0.0072548	0.80686	0.0048225	-0.058408	0.71696	-0.39877	-0.013518	0.25315	-0.0019617	0.0077915	-0.65621	-0.25464	-0.64083	-0.010493	0.010726	-0.035862	-0.35195	
Amplification Peak 4 - CN values	7p22.2 	chr7:1-8646788(probes 6357:6459)               	chr7:3580242-3593516(probes 6410:6413)        	chr7:3298188-5388358(probes 6409:6425)        	0.081588	  0.081588		Actual Copy Change Given	-0.0037142	0.0047781	0.15879	-0.0027683	0.020505	0.36165	1.2762	0.44927	0.015761	0.16747	0.23257	-0.6469	0.44421	0.0092763	0.80368	-0.16446	1.0306	0.58287	0.61536	0.89925	1.373	1.54	0.0076765	1.0362	0.014506	0.65405	1.4233	0.16276	0.1106	0.42517	0.92379	1.1721	-0.01185	0.0067029	1.3065	0.034323	0	1.077	1.113	0.044951	0.37475	0.029063	0.037873	0	0.43669	0.037649	0.44033	-0.00094228	0.0069245	0.10314	0.07887	-0.014508	-0.0012162	0.41364	0.015812	1.5726	0.71285	0.80048	1.5082	0.0046777	0.014718	-0.1786	0.21754	0.041765	0.0049176	1.5321	0.078735	-0.0083283	0.47874	0	0.42214	0.016902	-0.0023735	-0.0019701	-0.014193	-0.64652	-0.0013965	-0.023128	6	0.181	1.1791	0.024396	0.028074	0.60998	0.59848	3.7222	-0.0017671	-0.76542	0.33279	0.053386	5.8705	1.0401	0.032869	0.058927	0.41373	-0.43213	-0.15198	0.07837	1.8372	0.96673	-0.0079963	-0.075455	0.44956	
Amplification Peak 5 - CN values	11q13.3	chr11:68594424-71666457(probes 9568:9637)  	chr11:69788613-70074236(probes 9587:9594)  	chr11:69152738-70528368(probes 9581:9607)  	0.11498	   0.11498		Actual Copy Change Given	-0.36869	-0.51656	1.0133	0.00084265	6	0.24612	-0.33821	0.45096	0.87749	-0.068249	-0.23318	0.17192	0	-0.0077285	-0.76682	-0.34262	-0.01401	0	-0.35327	-0.010662	-0.33074	-0.0060205	-0.000703	-0.095871	-0.016571	-0.59374	0	-0.023116	0.020735	-0.14945	-0.039289	-0.73862	-0.33066	0.0069367	-0.32099	-0.0059158	-0.034077	-0.014083	0.53101	-0.31873	0.42409	0.28856	-0.078324	-0.08064	0.1708	-0.22427	-0.30457	0.41098	-0.63375	-0.074603	-0.090589	-0.02835	0	-0.00070903	-0.0089837	-0.7658	-0.17985	-0.020568	-0.020484	-0.0037265	-0.27467	-0.12387	-0.19678	-0.047832	-0.46496	0.054106	-0.855	0.32825	-0.016436	2.3652	6	-0.038668	-0.020514	1.5963	0.8559	-0.0051887	-0.0060623	-0.090162	0.0053766	0.00024253	-0.60935	-0.78864	1.1369	-0.020879	0.55514	-0.0052722	-0.22089	-0.0081134	-0.6345	0.056225	5.5857	-0.18209	-0.0201	0.038636	-0.018481	0.40048	1.0984	-0.30441	-0.013065	-0.014304	0.0056437	0	0.16274	
Amplification Peak 6 - CN values	12q15  	chr12:68983694-69478370(probes 10919:10930)	chr12:69125534-69373351(probes 10924:10929)	chr12:68766626-70406160(probes 10912:10942)	0.012434	  0.012434		Actual Copy Change Given	0.0023775	-0.0048369	0.14796	0.0010301	0.0033164	-0.024893	-0.013099	-0.0013898	0.016577	0.014589	6	-0.24298	0.019093	0	0.023331	0.11098	0.010692	0.019286	0.0075341	-0.0017982	0.024332	0.0017868	0.020084	-0.07632	0.0041361	0.054299	0.1658	-0.012398	0.00039292	0.057809	-0.17852	-0.73002	-0.016357	0.021987	-0.016582	0	-0.017891	0.47496	0.46631	0	-0.28185	-0.4757	-0.018253	0.0071795	0.14473	-0.011111	-0.29877	0.023556	0.012546	-0.010078	-0.25843	-0.031636	-0.0088352	0	-0.0013341	-0.01703	-0.22297	0.02375	4.6334	-0.013915	6	0.77706	-0.1774	-0.019232	0.067182	-0.61386	0.0046527	-0.0080609	0	-0.0064626	-0.021665	0.0057213	-0.001496	0	-0.0021224	-0.63899	0	-0.11365	0.0057991	-0.2053	0.0021162	-0.37896	0.039445	-0.0014653	-0.00053695	-0.00016446	0.020887	0.047335	-0.31083	0.014224	0.091261	1.0895	-0.0014271	1.9196	0.0077497	-0.10671	-0.28754	0.099715	0.022963	-0.0019816	-0.0083799	-0.041529	-0.060377	
Amplification Peak 7 - CN values	20q13.2	chr20:47396006-63025520(probes 14331:14513)	chr20:50046847-50269673(probes 14356:14359)	chr20:50046847-50457747(probes 14356:14362)	0.19463	   0.19463		Actual Copy Change Given	0.01618	-0.012735	0.53397	0	0.071073	1.0698	0.32259	0.4511	0.40259	-0.008792	0.15961	0.19103	0.85035	-0.0008725	0.79275	0.13789	-0.0047258	0.56978	0.0076436	1.2605	0.018095	-0.0021515	0.015911	0.46549	0.010081	0	1.2259	1.3226	0.089752	0.087339	0.48263	0.032722	0.56853	0	0.33295	-0.0020709	1.0027	1.1422	0.45947	0.067005	1.2119	0.021643	0.027155	0.016136	0.51484	0.50313	0.03827	0.4035	0.024335	0.014461	0.27071	4.0494	0.014983	0.20222	0.012845	-0.0093988	1.0076	-0.0069312	1.0104	0.8865	0.66934	0.24559	0.20215	0.033852	0.019238	1.9756	2.5806	0.019914	0.010338	1.218	0.45673	0.0098078	1.1133	-0.014041	0.00021328	0.13988	-0.009068	0.2222	-0.00041579	0.34928	0.56052	0.3609	-0.014144	0.59651	0.51871	1.9075	-0.0046778	0.89186	-0.0064314	2.3301	0.80155	0.49232	0.011668	0.071704	0.0086758	0.70352	2.9206	0.10574	1.2316	-0.014726	0.0018748	0.20384	-0.016006	
Amplification Peak 8 - CN values	22q13.2	chr22:40441512-42059356(probes 14950:15006)	chr22:41641728-41752947(probes 14988:14991)	chr22:40441513-42080423(probes 14951:15008)	0.026049	  0.026049		Actual Copy Change Given	0.014059	-0.5463	0.14249	0.029961	0.0048458	1.4579	0.096322	0.47088	-0.025574	0.087142	0.15169	0.15039	1.1528	0.0081259	0.74841	0.14855	0.08299	-0.49935	-0.0080924	0.80632	0.37416	-0.00019265	0.029357	0.4827	-0.0073416	-0.48923	-0.11866	-0.024692	0.014136	0.43531	0	0.11405	0.54567	0.019882	0	-0.018024	0.077711	1.1355	0.62709	0.0732	-0.4898	-0.046131	0.024304	0.04955	0.030535	1.0587	0.00092322	0	0.049212	1.065	-0.24998	0.030384	-0.0071904	0.61837	-0.016012	2.4558	0	1.5266	1.0179	0.036202	0.028973	0.052262	0.039688	0.020175	-0.53104	-0.56193	0.29726	0.026801	-0.0040482	0.032298	1.9384	-0.012528	0.012636	0.77507	-0.8547	-0.34159	1.4253	0.022113	-0.012658	-0.077333	0.082228	0.35613	0.01102	-0.023313	1.7229	4.6538	0.016305	1.8779	0.30942	-0.8895	2.1423	0.46585	0.016053	0.055666	0.023729	0.35166	0.37013	0.2831	2.3652	-0.01734	-0.028994	0.47596	-0.1256	
Deletion Peak 1 - CN values	1p36.31 	chr1:1-9528391(probes 1:51)                         	chr1:5457034-6270931(probes 29:33)                	chr1:5457034-6344168(probes 29:36)             	0.1634	     0.1634		Actual Copy Change Given	0.0095047	-0.0067556	-0.21226	0.012811	0.050566	-0.058355	0.27873	-0.003068	-0.011047	0.02206	0.20496	-1.0378	-0.011138	-0.0049967	-0.79665	0.056487	0.75676	-0.50616	0	-0.51789	0.027755	-0.006988	0.011102	-1.3026	-0.94527	-0.028079	-0.4777	0.42435	0.00017269	-0.060347	-0.026394	0.037261	-0.33934	0.015856	0.27592	-0.029798	0.0062855	-0.00061988	0.54187	0.067496	0.7016	-0.49113	0.0052879	0.0063041	-0.53999	0.39151	-0.30839	-0.0093854	-0.60588	-0.01768	0.065315	-0.11515	-0.0085057	0.20033	-0.0091442	0.0043066	0.51126	0.80264	-1.1781	-0.0072904	0.060717	0.0077137	0.025215	0.024375	-0.54308	0.028284	0.045497	-0.0048025	-0.0038123	0.0053497	1.993	0	-0.0070734	-0.0066831	-0.85341	-0.68742	-0.7338	-0.22353	0.017384	0.13885	0.0063652	0.011248	0.020086	-0.022574	-0.081537	-0.019194	0.017059	-0.03088	0.23395	-0.88437	0.057971	-0.051392	-0.002453	-0.013479	0.0151	-0.051822	-0.29339	-0.23776	-0.022092	-0.017031	-0.0079473	0.10084	0.46996	
Deletion Peak 2 - CN values	4q34.3  	chr4:182105085-182565336(probes 3737:3772)    	chr4:182183397-182197911(probes 3750:3755)    	chr4:182114198-182294989(probes 3740:3758) 	0.11077	    0.11077		Actual Copy Change Given	-0.011682	-0.50862	-1.5	-0.0091232	0.043426	-0.00082807	-0.29028	-0.00028619	0.013601	-0.0069854	-0.57011	0.16641	-0.79355	-0.010799	-0.026029	-1.329	-0.48956	0.0074853	0.0074202	-0.43123	0.0093914	-0.0047058	-0.015502	-0.75239	-0.0066876	-0.56909	0.5191	0	0.59948	-0.062545	0.62497	0.053908	-0.02104	-0.00045744	-0.30806	0.011919	-0.039772	0.0070095	-0.55926	-0.29661	0.41898	0.015627	-0.012666	-0.027962	-0.18927	-0.59701	-0.29111	-0.0065285	-0.030761	-0.0074043	-0.24812	0	0.019147	0.19722	-0.0060888	-0.074513	0.21934	-0.7153	0.013725	-0.75607	-0.30895	-0.29554	0	-0.017532	-0.56007	-0.50795	0.50001	-0.041244	-0.0097338	0.55027	-0.043551	0.00072448	0.028295	0.00093413	-0.0034875	0.18212	-0.0013696	-0.39869	-0.18546	-0.34597	-0.0010535	-0.37366	-0.0043449	-0.76002	-0.16255	-1.3603	-0.89509	-0.81284	-0.64717	-1.5	-0.5544	0.22411	-0.011586	0	0.0034069	0.0079152	0.052277	0.050145	0.0078491	0.0013173	0.011688	-0.062965	-0.75856	
Deletion Peak 3 - CN values	9p21.3  	chr9:21946194-21977643(probes 8263:8274)        	chr9:21968782-21969800(probes 8268:8269)        	chr9:20820491-25036605(probes 8190:8376)     	1.5461e-60	 9.4529e-23		Actual Copy Change Given	0.0062542	-1.037	0.1335	-0.0010606	-0.6963	-0.39206	0.0023692	-1.2736	-1.223	-0.014785	-1.0288	-1.4847	-0.40146	-0.0091252	-1.5	-0.92209	-0.76696	-1.5	-1.2253	-1.2975	-0.64599	-0.76796	-1.5	-0.68087	0.0031476	-0.57675	-1.5	-0.84678	-1.5	-0.34033	-0.37207	-1.5	-1.5	-0.68158	-0.98604	-0.70474	-0.013571	-0.52748	-0.57937	-0.73195	-0.49465	-1.5	-1.5	0.0014652	-0.66626	-0.60533	-1.2883	-0.26664	-0.65779	0.00085862	-0.083976	-0.95919	-1.2665	-0.21201	-1.3547	-0.77247	-0.18708	-0.013231	-1.1261	-0.005619	-1.2846	-0.42213	-0.18315	-0.033683	-0.53986	-0.51263	-1.1857	-0.67125	-0.48119	-1.2322	-1.0872	-0.03048	-1.436	0.7927	-0.85398	-1.4916	-0.75142	0.097582	-1.5	-0.0079378	-1.2207	-1.5	-1.0033	-1.5	-1.5	-0.92294	-1.5	-0.91385	-1.2626	-1.5	-0.55462	-1.1046	0	-0.71162	-1.5	-1.5	-0.6447	-0.36359	-1.5	0.0069205	0	-0.37005	-0.11026	
Deletion Peak 4 - CN values	9p21.3  	chr9:21975057-22009600(probes 8275:8284)        	chr9:21987216-21989244(probes 8278:8279)        	chr9:20820491-25036605(probes 8190:8376)     	4.6329e-60	 1.8582e-17		Actual Copy Change Given	0.0062542	-1.037	0.1335	-0.0010606	-0.6963	-0.39206	0.0023692	-0.45168	-1.223	-0.014785	0.42646	-1.4847	-0.40146	-0.0091252	-1.5	-0.92209	-1.5	-1.5	-1.2253	-1.2975	-0.64599	-0.76796	-1.5	-0.78449	0.0031476	-0.57675	-1.5	-0.84678	-1.5	-0.34033	-0.37207	-1.5	-1.5	-0.68158	-0.98604	-0.70474	-0.013571	-0.52748	-0.57937	-0.73195	-0.49465	-1.5	-1.5	0.0014652	-0.66626	-0.60533	-0.29887	-0.26664	-0.65779	0.00085862	-0.083976	-0.95919	-1.2665	-0.21201	-1.3547	-0.77247	-0.18708	-0.013231	-1.1261	-0.005619	-1.2846	-0.42213	-0.18315	-0.033683	-0.53986	-0.51263	-1.1857	-0.67125	-0.48119	-1.2322	-1.0872	-0.03048	-1.436	0.7927	-0.85398	-1.4916	-0.75142	-1.3835	-1.5	-0.0079378	-1.2207	-1.5	-1.0033	-1.5	-1.5	-0.92294	-1.5	-0.91385	-1.2626	-1.5	-0.55462	-1.1046	0	-0.71162	-1.5	-1.5	-0.6447	-0.36359	-1.5	0.0069205	0	-0.37005	-0.11026	
Deletion Peak 5 - CN values	10q23.31	chr10:89609324-89919188(probes 9115:9128)      	chr10:89646947-89704494(probes 9118:9120)      	chr10:89622617-89705495(probes 9116:9123)   	0.13031	    0.13031		Actual Copy Change Given	-0.3706	-0.52563	-1.5	-0.0038428	0.1102	-0.41625	-0.31692	-0.43872	0.53562	0.0042632	-1.4635	-0.64487	-0.4144	-0.0014972	-1.5	-0.59573	0.27849	-0.52483	-0.60728	-0.44967	-0.98196	0.0008602	0.0054023	-0.69033	-0.0022463	0.032268	-0.27385	0.0042546	-0.80087	-0.088447	-0.37624	-0.081099	-0.015633	-0.0018443	-0.30682	0.0059174	-0.018457	-0.53963	-1.1385	-0.36277	-0.73547	-0.26664	-0.88519	-0.00522	-0.14255	-0.63109	-0.62924	0.0077467	-0.61728	-0.090594	-0.24241	-0.4034	-0.62967	-0.0059642	0.010591	-0.0082256	-0.63028	0.026717	-0.07785	-0.018822	-0.63399	-0.039769	-0.1826	-0.00015743	-0.54061	-0.51397	-0.79451	-0.0089335	0.0047441	-0.0044927	-0.53653	-0.032323	-0.83137	-0.00693	0.0074818	-0.64129	-0.74085	-0.2047	-0.86396	-0.18965	-1.2137	-0.38869	-0.0070341	-0.61173	-0.64318	-0.0046013	-0.88721	0.034569	-0.63344	-0.89778	-0.53049	-0.62303	-0.14864	-0.72223	-1.5	-0.012528	0	-0.17438	-0.65534	-0.015542	-0.0027598	-0.061685	-0.48262	
Deletion Peak 6 - CN values	11q23.3 	chr11:105910449-135006516(probes 10094:10298)	chr11:116879492-118610638(probes 10169:10184)	chr11:92727674-135006516(probes 9988:10298)	1.4059e-05	 1.4059e-05		Actual Copy Change Given	-0.36869	-0.0072299	-1.0991	-0.44374	-0.68432	-0.46257	-0.33821	0.45096	0.82909	-0.068249	-0.25056	0.1897	-0.87643	-0.57367	-0.76682	-0.6203	-0.01401	0	-0.35327	-0.010662	-0.33074	-0.0060205	-0.000703	-1.2889	-0.016571	-0.61165	-0.913	0.0063606	-0.79072	-0.14945	-0.039289	-0.73862	-0.33066	-0.68453	-0.32099	-0.71137	-0.034077	-0.014083	-0.60493	-0.75301	0.33892	-0.96165	-0.078324	-0.08064	0.1708	-0.24651	-0.30457	-0.36383	-0.61267	-0.074603	-0.090589	-0.02835	0	-0.22283	-0.66166	-0.78155	-0.55193	-0.020568	-1.1473	-0.85184	-0.27467	-0.41047	-0.19678	-0.047832	-0.46496	0.1268	-0.8204	-0.35477	-0.49377	-0.62646	-0.56417	-0.038668	9.4077e-05	-0.81357	0.0037229	0	-0.0060623	-0.71617	-0.857	0.016128	-0.60935	-0.78864	-0.52908	0.0052358	0.55514	-0.92509	-0.88438	-0.0087059	-0.6345	-0.90347	-0.60424	-0.18209	-0.0201	-0.73554	-0.018481	0.41894	-0.65408	-0.051175	-0.64795	-0.9516	0.0056437	-0.057557	-0.47727	
