
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/THCA-TP/6185323/THCA-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/THCA-TP/6154827/THCA-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=.05", "-cQ=0.25", "-MF=ALL", "-oT=THCA-TP", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=THCA-TP"
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/THCA-TP/6154827/THCA-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/THCA-TP/6185323/THCA-TP.mergedcluster.txt"

nPatients in clinical file=484, in cluster file=496, common to both=484
[1]  10 484
[1] "CN_CNMF"
[1] 3
  1   2   3 
 31 376  75 
  1   2   3 
 31 376  75 
[1] "METHLYATION_CNMF"
[1] 3
  1   2   3 
149  79 256 
  1   2   3 
149  79 256 
[1] "RPPA_CNMF"
[1] 3
 1  2  3 
60 78 79 
 1  2  3 
60 78 79 
[1] "RPPA_CHIERARCHICAL"
[1] 3
 1  2  3 
31 92 94 
 1  2  3 
31 92 94 
[1] "MRNASEQ_CNMF"
[1] 3
  1   2   3   4 
150  50 117 159 
  1   2   3   4 
150  50 117 159 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
133 280  63 
  1   2   3 
133 280  63 
[1] "MIRSEQ_CNMF"
[1] 3
  1   2   3 
148 170 165 
  1   2   3 
148 170 165 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
  1   2   3 
152 129 202 
  1   2   3 
152 129 202 
[1] "MIRSEQ_MATURE_CNMF"
[1] 3
  1   2   3 
161 166 156 
  1   2   3 
161 166 156 
[1] "MIRSEQ_MATURE_CHIERARCHICAL"
[1] 3
  1   2   3 
192 127 164 
  1   2   3 
192 127 164 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "RADIATIONTHERAPY"                      
[14] "HISTOLOGICALTYPE"                      
[15] "RADIATIONS.RADIATION.REGIMENINDICATION"
[16] "RADIATIONEXPOSURE"                     
[17] "EXTRATHYROIDAL.EXTENSION"              
[18] "COMPLETENESS.OF.RESECTION"             
[19] "NUMBER.OF.LYMPH.NODES"                 
[20] "MULTIFOCALITY"                         
[21] "TUMOR.SIZE"                            
[22] "GLEASON_SCORE"                         
[23] "PSA_VALUE"                             
[24] "DAYS_TO_PSA"                           
[25] "BATCHNUMBER"                           

Input Data has 25 rows and 484 columns.

[1] "Batch" "25"   
[1] "Last Follow UP"
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0Z3 TCGA-BJ-A0Z5 TCGA-BJ-A0Z9 
         754          419          554          497          448          251 
TCGA-BJ-A0ZA TCGA-BJ-A0ZB TCGA-BJ-A0ZC TCGA-BJ-A0ZE TCGA-BJ-A0ZG TCGA-BJ-A0ZH 
         574          122          352          509          230          460 
TCGA-BJ-A0ZJ TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A191 TCGA-BJ-A192 TCGA-BJ-A28R 
         538          710          626          146          246          148 
TCGA-BJ-A28S TCGA-BJ-A28T TCGA-BJ-A28V TCGA-BJ-A28W TCGA-BJ-A28X TCGA-BJ-A28Z 
         639           84          155           34          532           37 
TCGA-BJ-A290 TCGA-BJ-A291 TCGA-BJ-A2N7 TCGA-BJ-A2N8 TCGA-BJ-A2NA TCGA-BJ-A3EZ 
         626          441          183          504           64           42 
TCGA-BJ-A3F0 TCGA-BJ-A3PR TCGA-BJ-A3PT TCGA-BJ-A3PU TCGA-BJ-A45C TCGA-BJ-A45D 
         427          244          367          305          174          197 
TCGA-BJ-A45E TCGA-BJ-A45F TCGA-BJ-A45G TCGA-BJ-A45H TCGA-BJ-A45I TCGA-BJ-A45J 
           1          105          193          237          187          154 
TCGA-BJ-A45K TCGA-BJ-A4O8 TCGA-BJ-A4O9 TCGA-CE-A13K TCGA-CE-A27D TCGA-CE-A3MD 
         273          150          181           16            3            6 
TCGA-CE-A3ME TCGA-CE-A481 TCGA-CE-A482 TCGA-CE-A483 TCGA-CE-A484 TCGA-CE-A485 
           7            3            2            3           12            3 
TCGA-DE-A0XZ TCGA-DE-A0Y2 TCGA-DE-A0Y3 TCGA-DE-A2OL TCGA-DE-A3KN TCGA-DE-A4M8 
         615          469         1109          182          482          185 
TCGA-DE-A4M9 TCGA-DE-A4MA TCGA-DE-A4MB TCGA-DE-A4MC TCGA-DE-A4MD TCGA-DJ-A13M 
         148          916          352          529          365          274 
TCGA-DJ-A13O TCGA-DJ-A13P TCGA-DJ-A13R TCGA-DJ-A13S TCGA-DJ-A13T TCGA-DJ-A13U 
         215         4199           92          265          758          393 
TCGA-DJ-A13V TCGA-DJ-A13W TCGA-DJ-A13X TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QF 
         362          454          243          334         3041          549 
TCGA-DJ-A1QG TCGA-DJ-A1QH TCGA-DJ-A1QI TCGA-DJ-A1QL TCGA-DJ-A1QM TCGA-DJ-A1QN 
         212          243          457          212           30          273 
TCGA-DJ-A1QO TCGA-DJ-A1QQ TCGA-DJ-A2PN TCGA-DJ-A2PO TCGA-DJ-A2PP TCGA-DJ-A2PQ 
          31          181          306          242          152          623 
TCGA-DJ-A2PR TCGA-DJ-A2PS TCGA-DJ-A2PT TCGA-DJ-A2PU TCGA-DJ-A2PV TCGA-DJ-A2PW 
         318           59          292          312          242          234 
TCGA-DJ-A2PX TCGA-DJ-A2PY TCGA-DJ-A2PZ TCGA-DJ-A2Q0 TCGA-DJ-A2Q1 TCGA-DJ-A2Q2 
         153          267          256          247          284          206 
TCGA-DJ-A2Q3 TCGA-DJ-A2Q4 TCGA-DJ-A2Q5 TCGA-DJ-A2Q6 TCGA-DJ-A2Q7 TCGA-DJ-A2Q8 
         280          287          301          262          291          215 
TCGA-DJ-A2Q9 TCGA-DJ-A2QA TCGA-DJ-A2QB TCGA-DJ-A2QC TCGA-DJ-A3UK TCGA-DJ-A3UM 
         315          378          330          304          459          944 
TCGA-DJ-A3UN TCGA-DJ-A3UO TCGA-DJ-A3UP TCGA-DJ-A3UQ TCGA-DJ-A3UR TCGA-DJ-A3US 
         380          956          498          595         1105          998 
TCGA-DJ-A3UT TCGA-DJ-A3UU TCGA-DJ-A3UW TCGA-DJ-A3UX TCGA-DJ-A3UY TCGA-DJ-A3UZ 
         469          538         1308          345          650          388 
TCGA-DJ-A3V0 TCGA-DJ-A3V2 TCGA-DJ-A3V3 TCGA-DJ-A3V4 TCGA-DJ-A3V5 TCGA-DJ-A3V7 
         761          615          930          443          584          299 
TCGA-DJ-A3V8 TCGA-DJ-A3V9 TCGA-DJ-A3VA TCGA-DJ-A3VB TCGA-DJ-A3VD TCGA-DJ-A3VE 
         647          623          363          697          639          576 
TCGA-DJ-A3VF TCGA-DJ-A3VG TCGA-DJ-A3VJ TCGA-DJ-A3VL TCGA-DJ-A3VM TCGA-DJ-A4UL 
         235          253          528          523          840          363 
TCGA-DJ-A4UQ TCGA-DJ-A4UR TCGA-DJ-A4UT TCGA-DJ-A4UW TCGA-DJ-A4V0 TCGA-DJ-A4V2 
         328          334          371          287          284           94 
TCGA-DJ-A4V4 TCGA-DJ-A4V5 TCGA-DO-A1JZ TCGA-DO-A1K0 TCGA-DO-A2HM TCGA-E3-A3DY 
         102          491         1670          655           70          945 
TCGA-E3-A3DZ TCGA-E3-A3E0 TCGA-E3-A3E1 TCGA-E3-A3E2 TCGA-E3-A3E3 TCGA-E3-A3E5 
         367         2018         1222         1921          921          427 
TCGA-E8-A242 TCGA-E8-A2EA TCGA-E8-A2JQ TCGA-E8-A3X7 TCGA-E8-A413 TCGA-E8-A414 
          34          678           NA           45          414          434 
TCGA-E8-A415 TCGA-E8-A416 TCGA-E8-A417 TCGA-E8-A418 TCGA-E8-A419 TCGA-E8-A432 
         420          428          434           45           NA          439 
TCGA-E8-A433 TCGA-E8-A434 TCGA-E8-A436 TCGA-E8-A437 TCGA-E8-A438 TCGA-E8-A44K 
         447          429          455          234          629          419 
TCGA-E8-A44M TCGA-EL-A3CL TCGA-EL-A3CM TCGA-EL-A3CN TCGA-EL-A3CO TCGA-EL-A3CP 
         413           NA           NA         4731           NA         4831 
TCGA-EL-A3CR TCGA-EL-A3CS TCGA-EL-A3CT TCGA-EL-A3CU TCGA-EL-A3CV TCGA-EL-A3CW 
          NA           NA           NA         4780         1154           NA 
TCGA-EL-A3CX TCGA-EL-A3CY TCGA-EL-A3CZ TCGA-EL-A3D0 TCGA-EL-A3D1 TCGA-EL-A3D4 
        2461          127         1788           44         2259         1381 
TCGA-EL-A3D5 TCGA-EL-A3D6 TCGA-EL-A3GO TCGA-EL-A3GP TCGA-EL-A3GQ TCGA-EL-A3GR 
        1017         3296         1196           43          918         3128 
TCGA-EL-A3GS TCGA-EL-A3GU TCGA-EL-A3GV TCGA-EL-A3GW TCGA-EL-A3GX TCGA-EL-A3GY 
        1989         3773         1532         1133         4494         3076 
TCGA-EL-A3H1 TCGA-EL-A3H2 TCGA-EL-A3H4 TCGA-EL-A3H5 TCGA-EL-A3H7 TCGA-EL-A3H8 
          NA           NA         1176         1604         3862         3989 
TCGA-EL-A3MW TCGA-EL-A3MX TCGA-EL-A3MY TCGA-EL-A3MZ TCGA-EL-A3N2 TCGA-EL-A3N3 
        3305           NA           NA           NA          370         4484 
TCGA-EL-A3T0 TCGA-EL-A3T1 TCGA-EL-A3T2 TCGA-EL-A3T3 TCGA-EL-A3T6 TCGA-EL-A3T7 
        3976         3941          988         3556         2987         1256 
TCGA-EL-A3T8 TCGA-EL-A3T9 TCGA-EL-A3TA TCGA-EL-A3TB TCGA-EL-A3ZG TCGA-EL-A3ZH 
        2901           NA         2035         2519         2352         2402 
TCGA-EL-A3ZK TCGA-EL-A3ZL TCGA-EL-A3ZP TCGA-EL-A3ZQ TCGA-EL-A3ZR TCGA-EL-A3ZS 
         957         1530         1597         1385         1465          214 
TCGA-EL-A3ZT TCGA-EL-A4JV TCGA-EL-A4JW TCGA-EL-A4JX TCGA-EL-A4JZ TCGA-EL-A4K0 
        1357         1393          586         1398         1154          578 
TCGA-EL-A4K1 TCGA-EL-A4K2 TCGA-EL-A4K4 TCGA-EL-A4K6 TCGA-EL-A4K7 TCGA-EL-A4K9 
         596          594         1022          874         1251         1149 
TCGA-EL-A4KD TCGA-EL-A4KG TCGA-EL-A4KH TCGA-EL-A4KI TCGA-EM-A1CS TCGA-EM-A1CT 
         911          405          361          264          817          553 
TCGA-EM-A1CU TCGA-EM-A1CV TCGA-EM-A1CW TCGA-EM-A1YA TCGA-EM-A1YB TCGA-EM-A1YC 
         636          376          549          602          592         1649 
TCGA-EM-A1YD TCGA-EM-A1YE TCGA-EM-A22I TCGA-EM-A22J TCGA-EM-A22K TCGA-EM-A22L 
        1734         1645          447          440          478          318 
TCGA-EM-A22M TCGA-EM-A22N TCGA-EM-A22O TCGA-EM-A22P TCGA-EM-A22Q TCGA-EM-A2CJ 
         441          324          357          339          432          500 
TCGA-EM-A2CK TCGA-EM-A2CL TCGA-EM-A2CN TCGA-EM-A2CO TCGA-EM-A2CP TCGA-EM-A2CQ 
         543          401          715          183           90          374 
TCGA-EM-A2CR TCGA-EM-A2CS TCGA-EM-A2CT TCGA-EM-A2CU TCGA-EM-A2OV TCGA-EM-A2OW 
         415          461          319          399          674          421 
TCGA-EM-A2OX TCGA-EM-A2OY TCGA-EM-A2OZ TCGA-EM-A2P0 TCGA-EM-A2P1 TCGA-EM-A2P2 
         600          535          367          535          531          526 
TCGA-EM-A2P3 TCGA-EM-A3AI TCGA-EM-A3AJ TCGA-EM-A3AK TCGA-EM-A3AL TCGA-EM-A3AN 
         444          531          576          477          430          597 
TCGA-EM-A3AO TCGA-EM-A3AP TCGA-EM-A3AQ TCGA-EM-A3AR TCGA-EM-A3FJ TCGA-EM-A3FK 
         407          254          500          510          850          723 
TCGA-EM-A3FL TCGA-EM-A3FM TCGA-EM-A3FN TCGA-EM-A3FO TCGA-EM-A3FP TCGA-EM-A3FQ 
         510          639          367          532          529          492 
TCGA-EM-A3FR TCGA-EM-A3O3 TCGA-EM-A3O6 TCGA-EM-A3O7 TCGA-EM-A3O8 TCGA-EM-A3O9 
         457          441          339          223          381          281 
TCGA-EM-A3OA TCGA-EM-A3OB TCGA-EM-A3ST TCGA-EM-A3SU TCGA-EM-A3SX TCGA-EM-A3SY 
         423          238          350          499          475          411 
TCGA-EM-A3SZ TCGA-EM-A4FF TCGA-EM-A4FH TCGA-EM-A4FK TCGA-EM-A4FM TCGA-EM-A4FN 
         389         2148          514          273          146          261 
TCGA-EM-A4FO TCGA-EM-A4FQ TCGA-EM-A4FR TCGA-EM-A4FU TCGA-EM-A4FV TCGA-EM-A4G1 
         254          298          153         1152          387           29 
TCGA-ET-A25G TCGA-ET-A25I TCGA-ET-A25J TCGA-ET-A25K TCGA-ET-A25L TCGA-ET-A25M 
        1444         1466          903          984          450          375 
TCGA-ET-A25N TCGA-ET-A25O TCGA-ET-A25P TCGA-ET-A25R TCGA-ET-A2MX TCGA-ET-A2MY 
         450          824          558          621         1643          672 
TCGA-ET-A2MZ TCGA-ET-A2N0 TCGA-ET-A2N1 TCGA-ET-A2N3 TCGA-ET-A2N4 TCGA-ET-A2N5 
         373          489          888          601           81         1771 
TCGA-ET-A39I TCGA-ET-A39J TCGA-ET-A39K TCGA-ET-A39L TCGA-ET-A39M TCGA-ET-A39N 
         418         2160         2205         1987         2582         2998 
TCGA-ET-A39O TCGA-ET-A39P TCGA-ET-A39R TCGA-ET-A39S TCGA-ET-A39T TCGA-ET-A3BN 
        1856         1786         1737         1676         1799          859 
TCGA-ET-A3BO TCGA-ET-A3BP TCGA-ET-A3BQ TCGA-ET-A3BS TCGA-ET-A3BT TCGA-ET-A3BU 
         177          127           74          168          752         1165 
TCGA-ET-A3BV TCGA-ET-A3BW TCGA-ET-A3BX TCGA-ET-A3DO TCGA-ET-A3DP TCGA-ET-A3DQ 
        1284           72          137         2458         1730         1821 
TCGA-ET-A3DR TCGA-ET-A3DS TCGA-ET-A3DT TCGA-ET-A3DU TCGA-ET-A3DV TCGA-ET-A3DW 
        1323            9          547          770         4026          751 
TCGA-ET-A40P TCGA-ET-A40Q TCGA-ET-A40R TCGA-ET-A40S TCGA-ET-A40T TCGA-ET-A4KN 
          98          218          146          152           64          122 
TCGA-ET-A4KQ TCGA-FE-A22Z TCGA-FE-A230 TCGA-FE-A231 TCGA-FE-A232 TCGA-FE-A233 
          59         1799         1816          961         1346          751 
TCGA-FE-A234 TCGA-FE-A235 TCGA-FE-A236 TCGA-FE-A237 TCGA-FE-A238 TCGA-FE-A239 
        2075         3130         2031         2474         1215           NA 
TCGA-FE-A23A TCGA-FE-A3PA TCGA-FE-A3PB TCGA-FE-A3PC TCGA-FE-A3PD TCGA-FK-A3S3 
        2489         2872         2589         2605         2396         1401 
TCGA-FK-A3SB TCGA-FK-A3SD TCGA-FK-A3SE TCGA-FK-A3SG TCGA-FK-A3SH TCGA-FK-A4UB 
         124           27          669           28         1463         2772 
TCGA-FY-A2QD TCGA-FY-A3BL TCGA-FY-A3I4 TCGA-FY-A3I5 TCGA-FY-A3NM TCGA-FY-A3NN 
          38           35           34           50           30           NA 
TCGA-FY-A3NP TCGA-FY-A3ON TCGA-FY-A3R6 TCGA-FY-A3R7 TCGA-FY-A3R8 TCGA-FY-A3R9 
         491           46           23            1          141          504 
TCGA-FY-A3RA TCGA-FY-A3TY TCGA-FY-A3W9 TCGA-FY-A3WA TCGA-FY-A3YR TCGA-FY-A40K 
         550           NA           23           29          208          126 
TCGA-FY-A40L TCGA-FY-A40M TCGA-FY-A40N TCGA-FY-A4B0 TCGA-FY-A4B3 TCGA-FY-A4B4 
         199          138           27           NA           41           35 
TCGA-GE-A2C6 TCGA-H2-A26U TCGA-H2-A2K9 TCGA-H2-A3RH TCGA-H2-A3RI TCGA-H2-A421 
         381          334          344          379           90           67 
TCGA-H2-A422 TCGA-IM-A3EB TCGA-IM-A3ED TCGA-IM-A3U2 TCGA-IM-A3U3 TCGA-IM-A41Y 
          88         1488         1442          312          513          298 
TCGA-IM-A41Z TCGA-IM-A420 TCGA-IM-A4EB TCGA-J8-A3NZ TCGA-J8-A3O0 TCGA-J8-A3O1 
         293           90          263           68         1313          827 
TCGA-J8-A3O2 TCGA-J8-A3YD TCGA-J8-A3YE TCGA-J8-A3YF TCGA-J8-A3YG TCGA-J8-A3YH 
          41          968          846          751          678          174 
TCGA-J8-A42S TCGA-J8-A4HW TCGA-J8-A4HY TCGA-KS-A41F TCGA-KS-A41I TCGA-KS-A41J 
          75           79            6         3680          485          477 
TCGA-KS-A41L TCGA-KS-A4I1 TCGA-KS-A4I3 TCGA-KS-A4I5 TCGA-KS-A4I7 TCGA-KS-A4I9 
        2637          182          366          204          376          530 
TCGA-KS-A4IB TCGA-KS-A4IC TCGA-KS-A4ID TCGA-L6-A4EP TCGA-L6-A4EQ TCGA-L6-A4ET 
        1963          447          623           18          361           34 
TCGA-L6-A4EU TCGA-MK-A4N6 TCGA-MK-A4N7 TCGA-MK-A4N9 
          22          505          440          265 
Variable 1:'AGE':	nDistinctValues=73,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=14,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=377,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=18,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'HISTOLOGICAL.TYPE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONEXPOSURE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'EXTRATHYROIDAL.EXTENSION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 18:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 19:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=32,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'MULTIFOCALITY':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 21:'TUMOR.SIZE':	nDistinctValues=70,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 22:'GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 23:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 24:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 25:'BATCH.NUMBER':	nDistinctValues=19,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "NEOPLASM.DISEASESTAGE"                 
 [3] "PATHOLOGY.T.STAGE"                     
 [4] "PATHOLOGY.N.STAGE"                     
 [5] "PATHOLOGY.M.STAGE"                     
 [6] "GENDER"                                
 [7] "HISTOLOGICAL.TYPE"                     
 [8] "RADIATIONS.RADIATION.REGIMENINDICATION"
 [9] "RADIATIONEXPOSURE"                     
[10] "EXTRATHYROIDAL.EXTENSION"              
[11] "COMPLETENESS.OF.RESECTION"             
[12] "NUMBER.OF.LYMPH.NODES"                 
[13] "MULTIFOCALITY"                         
[14] "TUMOR.SIZE"                            
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 484 columns, 1 survival variables, and 14 non-survival variables.
AGE, nv=73, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=6, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
140 161 160  21 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
140 161 160  21 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
 T1  T2  T3  T4 
140 161 160  21 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
140 161 160  21 
PATHOLOGY.N.STAGE, nv=2, binary=FALSE, numeric=TRUE
PATHOLOGY.M.STAGE, nv=3, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=4, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
RADIATIONEXPOSURE, nv=2, binary=FALSE, numeric=FALSE
EXTRATHYROIDAL.EXTENSION, nv=4, binary=FALSE, numeric=FALSE
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE
NUMBER.OF.LYMPH.NODES, nv=32, binary=FALSE, numeric=TRUE
MULTIFOCALITY, nv=2, binary=FALSE, numeric=FALSE
TUMOR.SIZE, nv=70, binary=FALSE, numeric=TRUE

Clustering(1) Variable = CN_CNMF
D1V1, survival
          sevent
clus2        0   1
  subtype1  27   3
  subtype2 362  10
  subtype3  74   1
subtype1 subtype2 subtype3 
      30      372       75 
subtype1 subtype2 subtype3 
       3       10        1 
$subtype1
TCGA-BJ-A0YZ TCGA-BJ-A190 TCGA-BJ-A192 TCGA-BJ-A290 TCGA-BJ-A45E TCGA-DE-A4MB 
       24.79        20.58         8.09        20.58         0.03        11.57 
TCGA-DJ-A2PV TCGA-DJ-A2Q0 TCGA-E8-A432 TCGA-EL-A3GP TCGA-EL-A3MX TCGA-EL-A3T9 
        7.96         8.12        14.43         1.41        57.60         5.72 
TCGA-EL-A4KI TCGA-EM-A1YC TCGA-EM-A1YD TCGA-EM-A1YE TCGA-EM-A22N TCGA-EM-A2CO 
        8.68        54.21        57.01        54.08        10.65         6.02 
TCGA-EM-A2OY TCGA-EM-A3AI TCGA-EM-A3O3 TCGA-EM-A3O9 TCGA-EM-A3SY TCGA-ET-A2MZ 
       17.59        17.46        14.50         9.24        13.51        12.26 
TCGA-ET-A39M TCGA-ET-A39N TCGA-FE-A231 TCGA-FE-A239 TCGA-FY-A3I5 TCGA-FY-A3NM 
       84.89        98.56        31.59        33.63         1.64         0.99 

$subtype2
TCGA-BJ-A0Z0 TCGA-BJ-A0Z3 TCGA-BJ-A0Z9 TCGA-BJ-A0ZA TCGA-BJ-A0ZB TCGA-BJ-A0ZC 
       13.78        16.34         8.25        18.87         4.01        11.57 
TCGA-BJ-A0ZE TCGA-BJ-A0ZG TCGA-BJ-A0ZJ TCGA-BJ-A191 TCGA-BJ-A28R TCGA-BJ-A28S 
       16.73         7.56        17.69         4.80         4.87        21.01 
TCGA-BJ-A28T TCGA-BJ-A28V TCGA-BJ-A28W TCGA-BJ-A28X TCGA-BJ-A28Z TCGA-BJ-A291 
        2.76         5.10         1.12        17.49         1.22        14.50 
TCGA-BJ-A2N7 TCGA-BJ-A2N8 TCGA-BJ-A2NA TCGA-BJ-A3EZ TCGA-BJ-A3F0 TCGA-BJ-A3PR 
        6.02        16.57         2.10         1.38        14.04         8.02 
TCGA-BJ-A3PU TCGA-BJ-A45C TCGA-BJ-A45G TCGA-BJ-A45H TCGA-BJ-A45I TCGA-BJ-A45J 
       10.03         5.72         6.35         7.79         6.15         5.06 
TCGA-BJ-A45K TCGA-BJ-A4O8 TCGA-BJ-A4O9 TCGA-CE-A13K TCGA-CE-A27D TCGA-CE-A3MD 
        8.98         4.93         5.95         0.53         0.10         0.20 
TCGA-CE-A3ME TCGA-CE-A481 TCGA-CE-A482 TCGA-CE-A483 TCGA-CE-A485 TCGA-DE-A0Y2 
        0.23         0.10         0.07         0.10         0.10        15.42 
TCGA-DE-A0Y3 TCGA-DE-A2OL TCGA-DE-A3KN TCGA-DE-A4M9 TCGA-DE-A4MA TCGA-DE-A4MC 
       36.46         5.98        15.85         4.87        30.12        17.39 
TCGA-DE-A4MD TCGA-DJ-A13O TCGA-DJ-A13P TCGA-DJ-A13R TCGA-DJ-A13S TCGA-DJ-A13U 
       12.00         7.07       138.05         3.02         8.71        12.92 
TCGA-DJ-A13V TCGA-DJ-A13W TCGA-DJ-A13X TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QF 
       11.90        14.93         7.99        10.98        99.98        18.05 
TCGA-DJ-A1QH TCGA-DJ-A1QI TCGA-DJ-A1QL TCGA-DJ-A1QM TCGA-DJ-A1QO TCGA-DJ-A1QQ 
        7.99        15.02         6.97         0.99         1.02         5.95 
TCGA-DJ-A2PN TCGA-DJ-A2PO TCGA-DJ-A2PP TCGA-DJ-A2PQ TCGA-DJ-A2PR TCGA-DJ-A2PT 
       10.06         7.96         5.00        20.48        10.45         9.60 
TCGA-DJ-A2PU TCGA-DJ-A2PW TCGA-DJ-A2PX TCGA-DJ-A2PY TCGA-DJ-A2PZ TCGA-DJ-A2Q1 
       10.26         7.69         5.03         8.78         8.42         9.34 
TCGA-DJ-A2Q2 TCGA-DJ-A2Q3 TCGA-DJ-A2Q4 TCGA-DJ-A2Q5 TCGA-DJ-A2Q6 TCGA-DJ-A2Q8 
        6.77         9.21         9.44         9.90         8.61         7.07 
TCGA-DJ-A2Q9 TCGA-DJ-A2QC TCGA-DJ-A3UM TCGA-DJ-A3UQ TCGA-DJ-A3UR TCGA-DJ-A3US 
       10.36         9.99        31.04        19.56        36.33        32.81 
TCGA-DJ-A3UT TCGA-DJ-A3UU TCGA-DJ-A3UW TCGA-DJ-A3UX TCGA-DJ-A3UY TCGA-DJ-A3UZ 
       15.42        17.69        43.00        11.34        21.37        12.76 
TCGA-DJ-A3V0 TCGA-DJ-A3V2 TCGA-DJ-A3V3 TCGA-DJ-A3V4 TCGA-DJ-A3V5 TCGA-DJ-A3V7 
       25.02        20.22        30.58        14.56        19.20         9.83 
TCGA-DJ-A3V8 TCGA-DJ-A3V9 TCGA-DJ-A3VA TCGA-DJ-A3VB TCGA-DJ-A3VD TCGA-DJ-A3VE 
       21.27        20.48        11.93        22.92        21.01        18.94 
TCGA-DJ-A3VF TCGA-DJ-A3VG TCGA-DJ-A3VJ TCGA-DJ-A3VL TCGA-DJ-A4UL TCGA-DJ-A4UQ 
        7.73         8.32        17.36        17.19        11.93        10.78 
TCGA-DJ-A4UT TCGA-DJ-A4UW TCGA-DJ-A4V0 TCGA-DJ-A4V2 TCGA-DJ-A4V4 TCGA-DJ-A4V5 
       12.20         9.44         9.34         3.09         3.35        16.14 
TCGA-DO-A1JZ TCGA-DO-A1K0 TCGA-DO-A2HM TCGA-E3-A3DY TCGA-E3-A3E0 TCGA-E3-A3E1 
       54.90        21.53         2.30        31.07        66.35        40.18 
TCGA-E3-A3E2 TCGA-E3-A3E3 TCGA-E8-A242 TCGA-E8-A2EA TCGA-E8-A3X7 TCGA-E8-A413 
       63.16        30.28         1.12        22.29         1.48        13.61 
TCGA-E8-A414 TCGA-E8-A415 TCGA-E8-A416 TCGA-E8-A417 TCGA-E8-A418 TCGA-E8-A433 
       14.27        13.81        14.07        14.27         1.48        14.70 
TCGA-E8-A436 TCGA-E8-A437 TCGA-E8-A438 TCGA-E8-A44K TCGA-E8-A44M TCGA-EL-A3CM 
       14.96         7.69        20.68        13.78        13.58        26.73 
TCGA-EL-A3CN TCGA-EL-A3CO TCGA-EL-A3CP TCGA-EL-A3CR TCGA-EL-A3CS TCGA-EL-A3CT 
      155.54        97.74       158.83         7.66        45.53        60.95 
TCGA-EL-A3CU TCGA-EL-A3CV TCGA-EL-A3CW TCGA-EL-A3CX TCGA-EL-A3CY TCGA-EL-A3CZ 
      157.15        37.94        57.01        80.91         4.18        58.78 
TCGA-EL-A3D5 TCGA-EL-A3D6 TCGA-EL-A3GO TCGA-EL-A3GQ TCGA-EL-A3GR TCGA-EL-A3GS 
       33.44       108.36        39.32        30.18       102.84        65.39 
TCGA-EL-A3GU TCGA-EL-A3GV TCGA-EL-A3GX TCGA-EL-A3GY TCGA-EL-A3H1 TCGA-EL-A3H2 
      124.04        50.37       147.75       101.13        49.32        33.47 
TCGA-EL-A3H4 TCGA-EL-A3H5 TCGA-EL-A3H7 TCGA-EL-A3H8 TCGA-EL-A3MW TCGA-EL-A3MY 
       38.66        52.73       126.97       131.15       108.66        17.49 
TCGA-EL-A3MZ TCGA-EL-A3N2 TCGA-EL-A3N3 TCGA-EL-A3T0 TCGA-EL-A3T1 TCGA-EL-A3T3 
       52.47        12.16       147.42       130.72       129.57       116.91 
TCGA-EL-A3T6 TCGA-EL-A3T7 TCGA-EL-A3T8 TCGA-EL-A3TA TCGA-EL-A3TB TCGA-EL-A3ZG 
       98.20        41.29        95.38        66.90        82.82        77.33 
TCGA-EL-A3ZH TCGA-EL-A3ZK TCGA-EL-A3ZP TCGA-EL-A3ZQ TCGA-EL-A3ZS TCGA-EL-A3ZT 
       78.97        31.46        52.50        45.53         7.04        44.61 
TCGA-EL-A4JW TCGA-EL-A4JX TCGA-EL-A4K0 TCGA-EL-A4K1 TCGA-EL-A4K2 TCGA-EL-A4K4 
       19.27        45.96        19.00        19.59        19.53        33.60 
TCGA-EL-A4K7 TCGA-EL-A4KD TCGA-EL-A4KG TCGA-EL-A4KH TCGA-EM-A1CT TCGA-EM-A1CU 
       41.13        29.95        13.32        11.87        18.18        20.91 
TCGA-EM-A1CV TCGA-EM-A1CW TCGA-EM-A1YA TCGA-EM-A1YB TCGA-EM-A22I TCGA-EM-A22J 
       12.36        18.05        19.79        19.46        14.70        14.47 
TCGA-EM-A22O TCGA-EM-A22Q TCGA-EM-A2CK TCGA-EM-A2CL TCGA-EM-A2CN TCGA-EM-A2CP 
       11.74        14.20        17.85        13.18        23.51         2.96 
TCGA-EM-A2CQ TCGA-EM-A2CS TCGA-EM-A2CT TCGA-EM-A2CU TCGA-EM-A2OV TCGA-EM-A2OW 
       12.30        15.16        10.49        13.12        22.16        13.84 
TCGA-EM-A2OX TCGA-EM-A2OZ TCGA-EM-A2P0 TCGA-EM-A2P1 TCGA-EM-A2P2 TCGA-EM-A2P3 
       19.73        12.07        17.59        17.46        17.29        14.60 
TCGA-EM-A3AJ TCGA-EM-A3AK TCGA-EM-A3AL TCGA-EM-A3AN TCGA-EM-A3AO TCGA-EM-A3AQ 
       18.94        15.68        14.14        19.63        13.38        16.44 
TCGA-EM-A3AR TCGA-EM-A3FJ TCGA-EM-A3FK TCGA-EM-A3FL TCGA-EM-A3FM TCGA-EM-A3FN 
       16.77        27.95        23.77        16.77        21.01        12.07 
TCGA-EM-A3FP TCGA-EM-A3FQ TCGA-EM-A3FR TCGA-EM-A3O6 TCGA-EM-A3O7 TCGA-EM-A3O8 
       17.39        16.18        15.02        11.15         7.33        12.53 
TCGA-EM-A3OA TCGA-EM-A3OB TCGA-EM-A3ST TCGA-EM-A3SU TCGA-EM-A4FF TCGA-EM-A4FH 
       13.91         7.82        11.51        16.41        70.62        16.90 
TCGA-EM-A4FK TCGA-EM-A4FM TCGA-EM-A4FN TCGA-EM-A4FQ TCGA-EM-A4FV TCGA-EM-A4G1 
        8.98         4.80         8.58         9.80        12.72         0.95 
TCGA-ET-A25G TCGA-ET-A25I TCGA-ET-A25J TCGA-ET-A25K TCGA-ET-A25M TCGA-ET-A25N 
       47.47        48.20        29.69        32.35        12.33        14.79 
TCGA-ET-A25P TCGA-ET-A25R TCGA-ET-A2MX TCGA-ET-A2MY TCGA-ET-A2N0 TCGA-ET-A2N1 
       18.35        20.42        54.02        22.09        16.08        29.19 
TCGA-ET-A2N3 TCGA-ET-A2N5 TCGA-ET-A39I TCGA-ET-A39J TCGA-ET-A39K TCGA-ET-A39O 
       19.76        58.22        13.74        71.01        72.49        61.02 
TCGA-ET-A39P TCGA-ET-A39R TCGA-ET-A39S TCGA-ET-A39T TCGA-ET-A3BN TCGA-ET-A3BO 
       58.72        57.11        55.10        59.15        28.24         5.82 
TCGA-ET-A3BQ TCGA-ET-A3BS TCGA-ET-A3BT TCGA-ET-A3BU TCGA-ET-A3BV TCGA-ET-A3BW 
        2.43         5.52        24.72        38.30        42.21         2.37 
TCGA-ET-A3BX TCGA-ET-A3DO TCGA-ET-A3DP TCGA-ET-A3DQ TCGA-ET-A3DR TCGA-ET-A3DT 
        4.50        80.81        56.88        59.87        43.50        17.98 
TCGA-ET-A3DU TCGA-ET-A3DV TCGA-ET-A3DW TCGA-ET-A40Q TCGA-ET-A40R TCGA-ET-A40S 
       25.32       132.36        24.69         7.17         4.80         5.00 
TCGA-ET-A4KN TCGA-ET-A4KQ TCGA-FE-A22Z TCGA-FE-A230 TCGA-FE-A232 TCGA-FE-A233 
        4.01         1.94        59.15        59.70        44.25        24.69 
TCGA-FE-A234 TCGA-FE-A235 TCGA-FE-A236 TCGA-FE-A238 TCGA-FE-A23A TCGA-FE-A3PA 
       68.22       102.90        66.77        39.95        81.83        94.42 
TCGA-FE-A3PC TCGA-FE-A3PD TCGA-FK-A3S3 TCGA-FK-A3SB TCGA-FK-A3SD TCGA-FK-A3SE 
       85.64        78.77        46.06         4.08         0.89        21.99 
TCGA-FK-A3SG TCGA-FK-A3SH TCGA-FK-A4UB TCGA-FY-A2QD TCGA-FY-A3BL TCGA-FY-A3I4 
        0.92        48.10        91.13         1.25         1.15         1.12 
TCGA-FY-A3ON TCGA-FY-A3R6 TCGA-FY-A3R8 TCGA-FY-A3R9 TCGA-FY-A3RA TCGA-FY-A3YR 
        1.51         0.76         4.64        16.57        18.08         6.84 
TCGA-FY-A40K TCGA-FY-A40L TCGA-FY-A40M TCGA-FY-A40N TCGA-FY-A4B3 TCGA-H2-A26U 
        4.14         6.54         4.54         0.89         1.35        10.98 
TCGA-H2-A2K9 TCGA-H2-A3RH TCGA-H2-A3RI TCGA-H2-A421 TCGA-H2-A422 TCGA-IM-A3EB 
       11.31        12.46         2.96         2.20         2.89        48.92 
TCGA-IM-A3ED TCGA-IM-A3U2 TCGA-IM-A41Y TCGA-IM-A420 TCGA-IM-A4EB TCGA-J8-A3NZ 
       47.41        10.26         9.80         2.96         8.65         2.24 
TCGA-J8-A3O1 TCGA-J8-A3O2 TCGA-J8-A3YE TCGA-J8-A3YF TCGA-J8-A3YG TCGA-J8-A42S 
       27.19         1.35        27.81        24.69        22.29         2.47 
TCGA-J8-A4HW TCGA-J8-A4HY TCGA-KS-A41F TCGA-KS-A41J TCGA-KS-A41L TCGA-KS-A4I1 
        2.60         0.20       120.99        15.68        86.70         5.98 
TCGA-KS-A4I3 TCGA-KS-A4I5 TCGA-KS-A4I9 TCGA-KS-A4IC TCGA-KS-A4ID TCGA-L6-A4EP 
       12.03         6.71        17.42        14.70        20.48         0.59 
TCGA-L6-A4EQ TCGA-L6-A4ET TCGA-L6-A4EU TCGA-MK-A4N6 TCGA-MK-A4N7 TCGA-MK-A4N9 
       11.87         1.12         0.72        16.60        14.47         8.71 

$subtype3
TCGA-BJ-A0Z2 TCGA-BJ-A0Z5 TCGA-BJ-A0ZH TCGA-BJ-A18Y TCGA-BJ-A3PT TCGA-BJ-A45D 
       18.21        14.73        15.12        23.34        12.07         6.48 
TCGA-BJ-A45F TCGA-CE-A484 TCGA-DE-A0XZ TCGA-DE-A4M8 TCGA-DJ-A13M TCGA-DJ-A13T 
        3.45         0.39        20.22         6.08         9.01        24.92 
TCGA-DJ-A1QG TCGA-DJ-A1QN TCGA-DJ-A2PS TCGA-DJ-A2Q7 TCGA-DJ-A2QA TCGA-DJ-A2QB 
        6.97         8.98         1.94         9.57        12.43        10.85 
TCGA-DJ-A3UK TCGA-DJ-A3UN TCGA-DJ-A3UO TCGA-DJ-A3UP TCGA-DJ-A3VM TCGA-DJ-A4UR 
       15.09        12.49        31.43        16.37        27.62        10.98 
TCGA-E3-A3DZ TCGA-E3-A3E5 TCGA-E8-A434 TCGA-EL-A3CL TCGA-EL-A3D0 TCGA-EL-A3D1 
       12.07        14.04        14.10        31.63         1.45        74.27 
TCGA-EL-A3D4 TCGA-EL-A3GW TCGA-EL-A3T2 TCGA-EL-A3ZL TCGA-EL-A3ZR TCGA-EL-A4JV 
       45.40        37.25        32.48        50.30        48.16        45.80 
TCGA-EL-A4JZ TCGA-EL-A4K6 TCGA-EL-A4K9 TCGA-EM-A1CS TCGA-EM-A22K TCGA-EM-A22L 
       37.94        28.73        37.78        26.86        15.72        10.45 
TCGA-EM-A22M TCGA-EM-A22P TCGA-EM-A2CJ TCGA-EM-A3AP TCGA-EM-A3FO TCGA-EM-A3SX 
       14.50        11.15        16.44         8.35        17.49        15.62 
TCGA-EM-A3SZ TCGA-EM-A4FO TCGA-EM-A4FR TCGA-EM-A4FU TCGA-ET-A25L TCGA-ET-A25O 
       12.79         8.35         5.03        37.87        14.79        27.09 
TCGA-ET-A2N4 TCGA-ET-A39L TCGA-ET-A3BP TCGA-ET-A3DS TCGA-ET-A40P TCGA-ET-A40T 
        2.66        65.33         4.18         0.30         3.22         2.10 
TCGA-FE-A237 TCGA-FE-A3PB TCGA-FY-A3R7 TCGA-FY-A3W9 TCGA-FY-A3WA TCGA-FY-A4B4 
       81.34        85.12         0.03         0.76         0.95         1.15 
TCGA-GE-A2C6 TCGA-IM-A3U3 TCGA-IM-A41Z TCGA-J8-A3O0 TCGA-J8-A3YD TCGA-J8-A3YH 
       12.53        16.87         9.63        43.17        31.82         5.72 
TCGA-KS-A41I TCGA-KS-A4I7 TCGA-KS-A4IB 
       15.95        12.36        64.54 

subtype1 subtype2 subtype3 
    0.03     0.07     0.03 
subtype1 subtype2 subtype3 
   98.56   158.83    85.12 
subtype1 subtype2 subtype3 
   13.97    15.09    14.50 
[1] "0.0 - 98.6 (14.0)"  "0.1 - 158.8 (15.1)" "0.0 - 85.1 (14.5)" 
  [1] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [37] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [55] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [97] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[109] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[199] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[205] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[217] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[229] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[235] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[241] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[247] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[253] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[259] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[265] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[271] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[277] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[283] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[289] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[295] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[301] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[307] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[313] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[319] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[325] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[331] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[337] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[343] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[349] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[355] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[361] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[367] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[373] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[379] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[385] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[391] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[397] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[403] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[409] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[415] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[421] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[427] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[433] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[439] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[445] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[451] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[457] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[463] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[469] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[475] "subtype2" "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [37] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [55] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [97] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[109] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[199] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[205] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[217] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[229] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[235] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[241] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[247] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[253] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[259] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[265] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[271] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[277] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[283] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[289] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[295] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[301] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[307] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[313] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[319] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[325] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[331] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[337] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[343] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[349] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[355] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[361] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[367] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[373] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[379] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[385] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[391] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[397] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[403] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[409] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[415] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[421] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[427] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[433] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[439] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[445] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[451] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[457] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[463] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[469] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[475] "subtype2" "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [13] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [25] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [37] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [55] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [61] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [67] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [85] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [97] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[109] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[127] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[139] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[145] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[151] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[169] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[175] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[193] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[199] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[205] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[217] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[223] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[229] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[235] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[241] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[247] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[253] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[259] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[265] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[271] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[277] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[283] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[289] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[295] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[301] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[307] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[313] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[319] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[325] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[331] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[337] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[343] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[349] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[355] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[361] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[367] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[373] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[379] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[385] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[391] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[397] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[403] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[409] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[415] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[421] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[427] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[433] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[439] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[445] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[451] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[457] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[463] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[469] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[475] "subtype2" "subtype2" "subtype2"
D1V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV STAGE IVA STAGE IVC
  subtype1       8       10         9        1         2         1
  subtype2     220       33        84        0        33         4
  subtype3      45        7        13        1         8         1
D1V3, multiclass
          vv
clus        T1  T2  T3  T4
  subtype1   5  12  12   2
  subtype2 109 120 129  16
  subtype3  25  28  19   3
D1V4, multiclass
D1V5, binary
          cls
clus         0   1
  subtype1  17   7
  subtype2 164 177
  subtype3  37  33
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   17    7
  subtype2  164  177
  subtype3   37   33
   clus
vv  subtype1 subtype2 subtype3
  0       17      164       37
  1        7      177       33
          vv
clus        M0  M1  MX
  subtype1   9   1  21
  subtype2 216   6 153
  subtype3  39   2  34
D1V6, multiclass
D1V7, binary
          cls
clus         0   1
  subtype1  19  12
  subtype2 280  96
  subtype3  55  20
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   19   12
  subtype2  280   96
  subtype3   55   20
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       19      280       55
  MALE         12       96       20
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              0                                            20
  subtype2              8                                           270
  subtype3              1                                            51
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                     10
  subtype2                                                                     67
  subtype3                                                                     20
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                   1
  subtype2                                                                  31
  subtype3                                                                   3
D1V8, multiclass
D1V9, binary
          cls
clus         0   1
  subtype1   2  29
  subtype2  11 365
  subtype3   1  74
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2   29
  subtype2   11  365
  subtype3    1   74
     clus
vv    subtype1 subtype2 subtype3
  NO         2       11        1
  YES       29      365       74
D1V10, binary
          cls
clus         0   1
  subtype1  27   1
  subtype2 311  16
  subtype3  69   0
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   27    1
  subtype2  311   16
  subtype3   69    0
     clus
vv    subtype1 subtype2 subtype3
  NO        27      311       69
  YES        1       16        0
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE VERY ADVANCED (T4B)
  subtype1            6                       0   23                   1
  subtype2          105                      15  243                   0
  subtype3           15                       1   56                   0
D1V11, multiclass
          vv
clus        R0  R1  R2  RX
  subtype1  22   3   0   4
  subtype2 293  38   3  18
  subtype3  56   6   1   7
D1V12, multiclass
D1V13, continuous
D1V14, binary
          cls
clus         0   1
  subtype1  12  19
  subtype2 167 201
  subtype3  39  34
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   12   19
  subtype2  167  201
  subtype3   39   34
            clus
vv           subtype1 subtype2 subtype3
  MULTIFOCAL       12      167       39
  UNIFOCAL         19      201       34
D1V15, continuous

Clustering(2) Variable = METHLYATION_CNMF
D2V1, survival
          sevent
clus2        0   1
  subtype1 144   3
  subtype2  72   4
  subtype3 249   7
subtype1 subtype2 subtype3 
     147       76      256 
subtype1 subtype2 subtype3 
       3        4        7 
$subtype1
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0ZA TCGA-BJ-A0ZC TCGA-BJ-A0ZE 
       24.79        13.78        18.21        18.87        11.57        16.73 
TCGA-BJ-A0ZG TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A191 TCGA-BJ-A192 TCGA-BJ-A28S 
        7.56        23.34        20.58         4.80         8.09        21.01 
TCGA-BJ-A28V TCGA-BJ-A291 TCGA-BJ-A2N7 TCGA-BJ-A2N8 TCGA-BJ-A3F0 TCGA-BJ-A3PT 
        5.10        14.50         6.02        16.57        14.04        12.07 
TCGA-BJ-A45C TCGA-BJ-A45D TCGA-BJ-A45F TCGA-BJ-A45G TCGA-BJ-A45K TCGA-CE-A3ME 
        5.72         6.48         3.45         6.35         8.98         0.23 
TCGA-CE-A484 TCGA-DE-A2OL TCGA-DE-A4M9 TCGA-DJ-A13M TCGA-DJ-A13S TCGA-DJ-A13W 
        0.39         5.98         4.87         9.01         8.71        14.93 
TCGA-DJ-A1QG TCGA-DJ-A1QL TCGA-DJ-A1QM TCGA-DJ-A2PP TCGA-DJ-A2PS TCGA-DJ-A2Q0 
        6.97         6.97         0.99         5.00         1.94         8.12 
TCGA-DJ-A2Q2 TCGA-DJ-A2QB TCGA-DJ-A3UP TCGA-DJ-A3UR TCGA-DJ-A3UT TCGA-DJ-A3UX 
        6.77        10.85        16.37        36.33        15.42        11.34 
TCGA-DJ-A3UY TCGA-DJ-A3UZ TCGA-DJ-A3VG TCGA-DJ-A3VL TCGA-DJ-A3VM TCGA-DJ-A4UR 
       21.37        12.76         8.32        17.19        27.62        10.98 
TCGA-E3-A3DZ TCGA-E8-A413 TCGA-E8-A415 TCGA-E8-A416 TCGA-E8-A434 TCGA-EL-A3CZ 
       12.07        13.61        13.81        14.07        14.10        58.78 
TCGA-EL-A3D4 TCGA-EL-A3D5 TCGA-EL-A3GO TCGA-EL-A3GW TCGA-EL-A3H1 TCGA-EL-A3H2 
       45.40        33.44        39.32        37.25        49.32        33.47 
TCGA-EL-A3T0 TCGA-EL-A3T2 TCGA-EL-A3TA TCGA-EL-A3ZG TCGA-EL-A3ZH TCGA-EL-A3ZR 
      130.72        32.48        66.90        77.33        78.97        48.16 
TCGA-EL-A4JV TCGA-EL-A4K2 TCGA-EL-A4K6 TCGA-EL-A4KI TCGA-EM-A1CW TCGA-EM-A1YA 
       45.80        19.53        28.73         8.68        18.05        19.79 
TCGA-EM-A1YB TCGA-EM-A1YC TCGA-EM-A1YD TCGA-EM-A1YE TCGA-EM-A22J TCGA-EM-A22K 
       19.46        54.21        57.01        54.08        14.47        15.72 
TCGA-EM-A22L TCGA-EM-A22N TCGA-EM-A22Q TCGA-EM-A2CJ TCGA-EM-A2CK TCGA-EM-A2CL 
       10.45        10.65        14.20        16.44        17.85        13.18 
TCGA-EM-A2CN TCGA-EM-A2CO TCGA-EM-A2CQ TCGA-EM-A2CR TCGA-EM-A2CT TCGA-EM-A2OV 
       23.51         6.02        12.30        13.64        10.49        22.16 
TCGA-EM-A2OW TCGA-EM-A2OY TCGA-EM-A2P2 TCGA-EM-A3AI TCGA-EM-A3AL TCGA-EM-A3AP 
       13.84        17.59        17.29        17.46        14.14         8.35 
TCGA-EM-A3AR TCGA-EM-A3FL TCGA-EM-A3FN TCGA-EM-A3FP TCGA-EM-A3FR TCGA-EM-A3O6 
       16.77        16.77        12.07        17.39        15.02        11.15 
TCGA-EM-A3O8 TCGA-EM-A3O9 TCGA-EM-A3OA TCGA-EM-A3OB TCGA-EM-A3ST TCGA-EM-A3SY 
       12.53         9.24        13.91         7.82        11.51        13.51 
TCGA-EM-A4FH TCGA-EM-A4FK TCGA-EM-A4FR TCGA-EM-A4FU TCGA-EM-A4G1 TCGA-ET-A25I 
       16.90         8.98         5.03        37.87         0.95        48.20 
TCGA-ET-A25P TCGA-ET-A2N1 TCGA-ET-A2N3 TCGA-ET-A2N5 TCGA-ET-A39I TCGA-ET-A39L 
       18.35        29.19        19.76        58.22        13.74        65.33 
TCGA-ET-A39N TCGA-ET-A3DS TCGA-ET-A3DV TCGA-ET-A40P TCGA-ET-A4KQ TCGA-FE-A239 
       98.56         0.30       132.36         3.22         1.94        33.63 
TCGA-FK-A3SD TCGA-FY-A2QD TCGA-FY-A3I4 TCGA-FY-A3I5 TCGA-FY-A3NM TCGA-FY-A3NP 
        0.89         1.25         1.12         1.64         0.99        16.14 
TCGA-FY-A3R7 TCGA-FY-A3R9 TCGA-FY-A3W9 TCGA-FY-A3WA TCGA-FY-A40M TCGA-FY-A40N 
        0.03        16.57         0.76         0.95         4.54         0.89 
TCGA-H2-A2K9 TCGA-H2-A3RH TCGA-IM-A41Z TCGA-J8-A3O0 TCGA-J8-A3YD TCGA-J8-A3YE 
       11.31        12.46         9.63        43.17        31.82        27.81 
TCGA-KS-A41I TCGA-KS-A41L TCGA-KS-A4I3 
       15.95        86.70        12.03 

$subtype2
TCGA-BJ-A0Z3 TCGA-BJ-A0ZJ TCGA-BJ-A28T TCGA-BJ-A28W TCGA-BJ-A28X TCGA-BJ-A28Z 
       16.34        17.69         2.76         1.12        17.49         1.22 
TCGA-BJ-A3PR TCGA-BJ-A45E TCGA-CE-A27D TCGA-CE-A481 TCGA-CE-A485 TCGA-DE-A4M8 
        8.02         0.03         0.10         0.10         0.10         6.08 
TCGA-DJ-A13O TCGA-DJ-A13R TCGA-DJ-A2PT TCGA-DJ-A2PX TCGA-DJ-A2Q1 TCGA-DJ-A2Q3 
        7.07         3.02         9.60         5.03         9.34         9.21 
TCGA-DJ-A2Q5 TCGA-DJ-A2Q9 TCGA-DJ-A3US TCGA-DJ-A3UW TCGA-DJ-A3V2 TCGA-DJ-A3VD 
        9.90        10.36        32.81        43.00        20.22        21.01 
TCGA-DJ-A3VF TCGA-DJ-A4UT TCGA-DJ-A4V0 TCGA-DJ-A4V5 TCGA-DO-A2HM TCGA-E8-A242 
        7.73        12.20         9.34        16.14         2.30         1.12 
TCGA-E8-A2EA TCGA-E8-A414 TCGA-E8-A44M TCGA-EL-A3CO TCGA-EL-A3CT TCGA-EL-A3CU 
       22.29        14.27        13.58        97.74        60.95       157.15 
TCGA-EL-A3CV TCGA-EL-A3CW TCGA-EL-A3CY TCGA-EL-A3D6 TCGA-EL-A3N3 TCGA-EL-A3T1 
       37.94        57.01         4.18       108.36       147.42       129.57 
TCGA-EL-A3T6 TCGA-EL-A3T9 TCGA-EL-A3ZS TCGA-EL-A4JX TCGA-EL-A4JZ TCGA-EM-A22M 
       98.20         5.72         7.04        45.96        37.94        14.50 
TCGA-EM-A22P TCGA-EM-A2CP TCGA-EM-A2P1 TCGA-EM-A3AJ TCGA-EM-A3FQ TCGA-EM-A3O3 
       11.15         2.96        17.46        18.94        16.18        14.50 
TCGA-EM-A3SU TCGA-EM-A4FO TCGA-ET-A39M TCGA-ET-A39R TCGA-ET-A3BS TCGA-ET-A3BV 
       16.41         8.35        84.89        57.11         5.52        42.21 
TCGA-ET-A3DO TCGA-ET-A3DQ TCGA-ET-A3DT TCGA-ET-A3DU TCGA-ET-A40S TCGA-ET-A4KN 
       80.81        59.87        17.98        25.32         5.00         4.01 
TCGA-FE-A230 TCGA-FE-A23A TCGA-FY-A3R6 TCGA-GE-A2C6 TCGA-H2-A26U TCGA-H2-A421 
       59.70        81.83         0.76        12.53        10.98         2.20 
TCGA-IM-A3EB TCGA-IM-A420 TCGA-IM-A4EB TCGA-KS-A4ID 
       48.92         2.96         8.65        20.48 

$subtype3
TCGA-BJ-A0Z5 TCGA-BJ-A0Z9 TCGA-BJ-A0ZB TCGA-BJ-A0ZH TCGA-BJ-A28R TCGA-BJ-A290 
       14.73         8.25         4.01        15.12         4.87        20.58 
TCGA-BJ-A2NA TCGA-BJ-A3EZ TCGA-BJ-A3PU TCGA-BJ-A45H TCGA-BJ-A45I TCGA-BJ-A45J 
        2.10         1.38        10.03         7.79         6.15         5.06 
TCGA-BJ-A4O8 TCGA-BJ-A4O9 TCGA-CE-A13K TCGA-CE-A3MD TCGA-CE-A482 TCGA-CE-A483 
        4.93         5.95         0.53         0.20         0.07         0.10 
TCGA-DE-A0XZ TCGA-DE-A0Y2 TCGA-DE-A0Y3 TCGA-DE-A3KN TCGA-DE-A4MA TCGA-DE-A4MB 
       20.22        15.42        36.46        15.85        30.12        11.57 
TCGA-DE-A4MC TCGA-DE-A4MD TCGA-DJ-A13P TCGA-DJ-A13T TCGA-DJ-A13U TCGA-DJ-A13V 
       17.39        12.00       138.05        24.92        12.92        11.90 
TCGA-DJ-A13X TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QF TCGA-DJ-A1QH TCGA-DJ-A1QI 
        7.99        10.98        99.98        18.05         7.99        15.02 
TCGA-DJ-A1QN TCGA-DJ-A1QO TCGA-DJ-A1QQ TCGA-DJ-A2PN TCGA-DJ-A2PO TCGA-DJ-A2PQ 
        8.98         1.02         5.95        10.06         7.96        20.48 
TCGA-DJ-A2PR TCGA-DJ-A2PU TCGA-DJ-A2PV TCGA-DJ-A2PW TCGA-DJ-A2PY TCGA-DJ-A2PZ 
       10.45        10.26         7.96         7.69         8.78         8.42 
TCGA-DJ-A2Q4 TCGA-DJ-A2Q6 TCGA-DJ-A2Q7 TCGA-DJ-A2Q8 TCGA-DJ-A2QA TCGA-DJ-A2QC 
        9.44         8.61         9.57         7.07        12.43         9.99 
TCGA-DJ-A3UK TCGA-DJ-A3UM TCGA-DJ-A3UN TCGA-DJ-A3UO TCGA-DJ-A3UQ TCGA-DJ-A3UU 
       15.09        31.04        12.49        31.43        19.56        17.69 
TCGA-DJ-A3V0 TCGA-DJ-A3V3 TCGA-DJ-A3V4 TCGA-DJ-A3V5 TCGA-DJ-A3V7 TCGA-DJ-A3V8 
       25.02        30.58        14.56        19.20         9.83        21.27 
TCGA-DJ-A3V9 TCGA-DJ-A3VA TCGA-DJ-A3VB TCGA-DJ-A3VE TCGA-DJ-A3VJ TCGA-DJ-A4UL 
       20.48        11.93        22.92        18.94        17.36        11.93 
TCGA-DJ-A4UQ TCGA-DJ-A4UW TCGA-DJ-A4V2 TCGA-DJ-A4V4 TCGA-DO-A1JZ TCGA-DO-A1K0 
       10.78         9.44         3.09         3.35        54.90        21.53 
TCGA-E3-A3DY TCGA-E3-A3E0 TCGA-E3-A3E1 TCGA-E3-A3E2 TCGA-E3-A3E3 TCGA-E3-A3E5 
       31.07        66.35        40.18        63.16        30.28        14.04 
TCGA-E8-A3X7 TCGA-E8-A417 TCGA-E8-A418 TCGA-E8-A432 TCGA-E8-A433 TCGA-E8-A436 
        1.48        14.27         1.48        14.43        14.70        14.96 
TCGA-E8-A437 TCGA-E8-A438 TCGA-E8-A44K TCGA-EL-A3CL TCGA-EL-A3CM TCGA-EL-A3CN 
        7.69        20.68        13.78        31.63        26.73       155.54 
TCGA-EL-A3CP TCGA-EL-A3CR TCGA-EL-A3CS TCGA-EL-A3CX TCGA-EL-A3D0 TCGA-EL-A3D1 
      158.83         7.66        45.53        80.91         1.45        74.27 
TCGA-EL-A3GP TCGA-EL-A3GQ TCGA-EL-A3GR TCGA-EL-A3GS TCGA-EL-A3GU TCGA-EL-A3GV 
        1.41        30.18       102.84        65.39       124.04        50.37 
TCGA-EL-A3GX TCGA-EL-A3GY TCGA-EL-A3H4 TCGA-EL-A3H5 TCGA-EL-A3H7 TCGA-EL-A3H8 
      147.75       101.13        38.66        52.73       126.97       131.15 
TCGA-EL-A3MW TCGA-EL-A3MX TCGA-EL-A3MY TCGA-EL-A3MZ TCGA-EL-A3N2 TCGA-EL-A3T3 
      108.66        57.60        17.49        52.47        12.16       116.91 
TCGA-EL-A3T7 TCGA-EL-A3T8 TCGA-EL-A3TB TCGA-EL-A3ZK TCGA-EL-A3ZL TCGA-EL-A3ZP 
       41.29        95.38        82.82        31.46        50.30        52.50 
TCGA-EL-A3ZQ TCGA-EL-A3ZT TCGA-EL-A4JW TCGA-EL-A4K0 TCGA-EL-A4K1 TCGA-EL-A4K4 
       45.53        44.61        19.27        19.00        19.59        33.60 
TCGA-EL-A4K7 TCGA-EL-A4K9 TCGA-EL-A4KD TCGA-EL-A4KG TCGA-EL-A4KH TCGA-EM-A1CS 
       41.13        37.78        29.95        13.32        11.87        26.86 
TCGA-EM-A1CT TCGA-EM-A1CU TCGA-EM-A1CV TCGA-EM-A22I TCGA-EM-A22O TCGA-EM-A2CS 
       18.18        20.91        12.36        14.70        11.74        15.16 
TCGA-EM-A2CU TCGA-EM-A2OX TCGA-EM-A2OZ TCGA-EM-A2P0 TCGA-EM-A2P3 TCGA-EM-A3AK 
       13.12        19.73        12.07        17.59        14.60        15.68 
TCGA-EM-A3AN TCGA-EM-A3AO TCGA-EM-A3AQ TCGA-EM-A3FJ TCGA-EM-A3FK TCGA-EM-A3FM 
       19.63        13.38        16.44        27.95        23.77        21.01 
TCGA-EM-A3FO TCGA-EM-A3O7 TCGA-EM-A3SX TCGA-EM-A3SZ TCGA-EM-A4FF TCGA-EM-A4FM 
       17.49         7.33        15.62        12.79        70.62         4.80 
TCGA-EM-A4FN TCGA-EM-A4FQ TCGA-EM-A4FV TCGA-ET-A25G TCGA-ET-A25J TCGA-ET-A25K 
        8.58         9.80        12.72        47.47        29.69        32.35 
TCGA-ET-A25L TCGA-ET-A25M TCGA-ET-A25N TCGA-ET-A25O TCGA-ET-A25R TCGA-ET-A2MX 
       14.79        12.33        14.79        27.09        20.42        54.02 
TCGA-ET-A2MY TCGA-ET-A2MZ TCGA-ET-A2N0 TCGA-ET-A2N4 TCGA-ET-A39J TCGA-ET-A39K 
       22.09        12.26        16.08         2.66        71.01        72.49 
TCGA-ET-A39O TCGA-ET-A39P TCGA-ET-A39S TCGA-ET-A39T TCGA-ET-A3BN TCGA-ET-A3BO 
       61.02        58.72        55.10        59.15        28.24         5.82 
TCGA-ET-A3BP TCGA-ET-A3BQ TCGA-ET-A3BT TCGA-ET-A3BU TCGA-ET-A3BW TCGA-ET-A3BX 
        4.18         2.43        24.72        38.30         2.37         4.50 
TCGA-ET-A3DP TCGA-ET-A3DR TCGA-ET-A3DW TCGA-ET-A40Q TCGA-ET-A40R TCGA-ET-A40T 
       56.88        43.50        24.69         7.17         4.80         2.10 
TCGA-FE-A22Z TCGA-FE-A231 TCGA-FE-A232 TCGA-FE-A233 TCGA-FE-A234 TCGA-FE-A235 
       59.15        31.59        44.25        24.69        68.22       102.90 
TCGA-FE-A236 TCGA-FE-A237 TCGA-FE-A238 TCGA-FE-A3PA TCGA-FE-A3PB TCGA-FE-A3PC 
       66.77        81.34        39.95        94.42        85.12        85.64 
TCGA-FE-A3PD TCGA-FK-A3S3 TCGA-FK-A3SB TCGA-FK-A3SE TCGA-FK-A3SG TCGA-FK-A3SH 
       78.77        46.06         4.08        21.99         0.92        48.10 
TCGA-FK-A4UB TCGA-FY-A3BL TCGA-FY-A3ON TCGA-FY-A3R8 TCGA-FY-A3RA TCGA-FY-A3YR 
       91.13         1.15         1.51         4.64        18.08         6.84 
TCGA-FY-A40K TCGA-FY-A40L TCGA-FY-A4B3 TCGA-FY-A4B4 TCGA-H2-A3RI TCGA-H2-A422 
        4.14         6.54         1.35         1.15         2.96         2.89 
TCGA-IM-A3ED TCGA-IM-A3U2 TCGA-IM-A3U3 TCGA-IM-A41Y TCGA-J8-A3NZ TCGA-J8-A3O1 
       47.41        10.26        16.87         9.80         2.24        27.19 
TCGA-J8-A3O2 TCGA-J8-A3YF TCGA-J8-A3YG TCGA-J8-A3YH TCGA-J8-A42S TCGA-J8-A4HW 
        1.35        24.69        22.29         5.72         2.47         2.60 
TCGA-J8-A4HY TCGA-KS-A41F TCGA-KS-A41J TCGA-KS-A4I1 TCGA-KS-A4I5 TCGA-KS-A4I7 
        0.20       120.99        15.68         5.98         6.71        12.36 
TCGA-KS-A4I9 TCGA-KS-A4IB TCGA-KS-A4IC TCGA-L6-A4EP TCGA-L6-A4EQ TCGA-L6-A4ET 
       17.42        64.54        14.70         0.59        11.87         1.12 
TCGA-L6-A4EU TCGA-MK-A4N6 TCGA-MK-A4N7 TCGA-MK-A4N9 
        0.72        16.60        14.47         8.71 

subtype1 subtype2 subtype3 
    0.03     0.03     0.07 
subtype1 subtype2 subtype3 
  132.36   157.15   158.83 
subtype1 subtype2 subtype3 
  14.040   13.925   15.765 
[1] "0.0 - 132.4 (14.0)" "0.0 - 157.2 (13.9)" "0.1 - 158.8 (15.8)"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [19] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [25] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [31] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [37] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [49] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [55] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [61] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [67] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [73] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [85] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[103] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[121] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[139] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[145] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[151] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[157] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[169] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[175] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[193] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[199] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[205] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[211] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[217] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[223] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[229] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[235] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[241] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[247] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[253] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[259] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[265] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[271] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[283] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[289] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[295] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[301] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[307] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[313] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[325] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[331] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[337] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[343] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[349] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[355] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[361] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[367] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[373] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[379] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[385] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[391] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[397] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[403] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[409] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[415] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[421] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[427] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[433] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[439] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[445] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[451] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[457] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[463] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[469] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[475] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [19] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [25] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [31] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [37] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [49] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [55] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [61] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [67] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [73] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [85] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[103] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[121] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[139] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[145] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[151] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[157] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[169] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[175] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[193] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[199] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[205] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[211] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[217] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[223] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[229] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[235] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[241] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[247] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[253] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[259] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[265] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[271] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[283] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[289] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[295] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[301] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[307] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[313] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[325] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[331] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[337] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[343] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[349] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[355] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[361] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[367] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[373] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[379] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[385] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[391] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[397] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[403] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[409] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[415] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[421] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[427] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[433] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[439] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[445] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[451] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[457] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[463] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[469] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[475] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
 [19] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
 [25] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [31] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [37] "subtype2" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [43] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [49] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
 [55] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
 [61] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [67] "subtype2" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
 [73] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
 [79] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
 [85] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [91] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[103] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
[121] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[133] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[139] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[145] "subtype3" "subtype1" "subtype2" "subtype3" "subtype2" "subtype3"
[151] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[157] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
[169] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[175] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[193] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[199] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[205] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[211] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[217] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[223] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[229] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[235] "subtype3" "subtype3" "subtype1" "subtype2" "subtype3" "subtype1"
[241] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[247] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[253] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[259] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[265] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[271] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[283] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[289] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[295] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[301] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[307] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[313] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype1" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[325] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[331] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[337] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[343] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[349] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[355] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[361] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[367] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[373] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[379] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[385] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[391] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[397] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[403] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[409] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[415] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[421] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[427] "subtype3" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[433] "subtype3" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
[439] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[445] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[451] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[457] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[463] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[469] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[475] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
D2V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV STAGE IVA STAGE IVC
  subtype1      86       30        26        1         3         2
  subtype2      51        2        18        1         7         0
  subtype3     137       19        62        0        33         4
D2V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 54 55 39  1
  subtype2 26 24 26  2
  subtype3 60 82 95 18
D2V4, multiclass
D2V5, binary
          cls
clus         0   1
  subtype1  98  27
  subtype2  31  45
  subtype3  91 145
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   98   27
  subtype2   31   45
  subtype3   91  145
   clus
vv  subtype1 subtype2 subtype3
  0       98       31       91
  1       27       45      145
          vv
clus        M0  M1  MX
  subtype1  70   3  75
  subtype2  47   0  32
  subtype3 148   6 102
D2V6, multiclass
D2V7, binary
          cls
clus         0   1
  subtype1 108  41
  subtype2  60  19
  subtype3 187  69
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  108   41
  subtype2   60   19
  subtype3  187   69
        clus
vv       subtype1 subtype2 subtype3
  FEMALE      108       60      187
  MALE         41       19       69
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              2                                            70
  subtype2              2                                            65
  subtype3              5                                           206
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                     77
  subtype2                                                                      6
  subtype3                                                                     16
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                   0
  subtype2                                                                   6
  subtype3                                                                  29
D2V8, multiclass
D2V9, binary
          cls
clus         0   1
  subtype1   1 148
  subtype2   2  77
  subtype3  11 245
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1  148
  subtype2    2   77
  subtype3   11  245
     clus
vv    subtype1 subtype2 subtype3
  NO         1        2       11
  YES      148       77      245
D2V10, binary
          cls
clus         0   1
  subtype1 121   6
  subtype2  67   4
  subtype3 220   7
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  121    6
  subtype2   67    4
  subtype3  220    7
     clus
vv    subtype1 subtype2 subtype3
  NO       121       67      220
  YES        6        4        7
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE VERY ADVANCED (T4B)
  subtype1           21                       0  120                   0
  subtype2           20                       1   54                   1
  subtype3           85                      15  150                   0
D2V11, multiclass
          vv
clus        R0  R1  R2  RX
  subtype1 120   8   0   7
  subtype2  60   8   0   4
  subtype3 193  31   4  18
D2V12, multiclass
D2V13, continuous
D2V14, binary
          cls
clus         0   1
  subtype1  68  78
  subtype2  34  43
  subtype3 117 134
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   68   78
  subtype2   34   43
  subtype3  117  134
            clus
vv           subtype1 subtype2 subtype3
  MULTIFOCAL       68       34      117
  UNIFOCAL         78       43      134
D2V15, continuous

Clustering(3) Variable = RPPA_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1 56  4
  subtype2 74  4
  subtype3 73  5
subtype1 subtype2 subtype3 
      60       78       78 
subtype1 subtype2 subtype3 
       4        4        5 
$subtype1
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0Z3 TCGA-BJ-A0ZA TCGA-BJ-A0ZC 
       24.79        13.78        18.21        16.34        18.87        11.57 
TCGA-BJ-A0ZE TCGA-BJ-A0ZG TCGA-BJ-A0ZJ TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-DE-A3KN 
       16.73         7.56        17.69        23.34        20.58        15.85 
TCGA-DJ-A13M TCGA-DJ-A13W TCGA-DJ-A13X TCGA-DJ-A1QF TCGA-DJ-A1QM TCGA-DJ-A2PN 
        9.01        14.93         7.99        18.05         0.99        10.06 
TCGA-DJ-A2PO TCGA-DJ-A2PV TCGA-DJ-A2PZ TCGA-DJ-A2Q2 TCGA-DJ-A2Q6 TCGA-DJ-A2Q7 
        7.96         7.96         8.42         6.77         8.61         9.57 
TCGA-DJ-A2Q9 TCGA-DJ-A2QA TCGA-DJ-A2QC TCGA-E3-A3DZ TCGA-EL-A3CL TCGA-EL-A3CN 
       10.36        12.43         9.99        12.07        31.63       155.54 
TCGA-EL-A3CO TCGA-EL-A3CP TCGA-EL-A3CU TCGA-EL-A3CW TCGA-EL-A3CY TCGA-EL-A3CZ 
       97.74       158.83       157.15        57.01         4.18        58.78 
TCGA-EL-A3D4 TCGA-EL-A3D5 TCGA-EL-A3GV TCGA-EL-A3H1 TCGA-EM-A1CW TCGA-EM-A1YD 
       45.40        33.44        50.37        49.32        18.05        57.01 
TCGA-EM-A22L TCGA-EM-A2CJ TCGA-EM-A2CK TCGA-EM-A2CL TCGA-EM-A2CQ TCGA-EM-A2CU 
       10.45        16.44        17.85        13.18        12.30        13.12 
TCGA-EM-A2OV TCGA-EM-A3AJ TCGA-EM-A3AL TCGA-EM-A3AN TCGA-EM-A3AP TCGA-EM-A3FL 
       22.16        18.94        14.14        19.63         8.35        16.77 
TCGA-ET-A2N5 TCGA-ET-A39I TCGA-ET-A3BP TCGA-ET-A3DP TCGA-FY-A2QD TCGA-J8-A3O0 
       58.22        13.74         4.18        56.88         1.25        43.17 

$subtype2
TCGA-BJ-A0Z5 TCGA-BJ-A0Z9 TCGA-BJ-A0ZB TCGA-BJ-A192 TCGA-BJ-A28R TCGA-BJ-A290 
       14.73         8.25         4.01         8.09         4.87        20.58 
TCGA-BJ-A2N7 TCGA-BJ-A2NA TCGA-BJ-A3EZ TCGA-CE-A3ME TCGA-DE-A0Y2 TCGA-DJ-A13O 
        6.02         2.10         1.38         0.23        15.42         7.07 
TCGA-DJ-A13R TCGA-DJ-A13S TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QG TCGA-DJ-A1QO 
        3.02         8.71        10.98        99.98         6.97         1.02 
TCGA-DJ-A2PP TCGA-DJ-A2PY TCGA-DJ-A2Q0 TCGA-DJ-A2Q8 TCGA-DJ-A2QB TCGA-DO-A1K0 
        5.00         8.78         8.12         7.07        10.85        21.53 
TCGA-E3-A3DY TCGA-E3-A3E1 TCGA-E3-A3E3 TCGA-E3-A3E5 TCGA-E8-A2EA TCGA-EL-A3CM 
       31.07        40.18        30.28        14.04        22.29        26.73 
TCGA-EL-A3CS TCGA-EL-A3CT TCGA-EL-A3CV TCGA-EL-A3D6 TCGA-EL-A3GS TCGA-EL-A3GU 
       45.53        60.95        37.94       108.36        65.39       124.04 
TCGA-EL-A3GY TCGA-EL-A3H4 TCGA-EL-A3H5 TCGA-EL-A3H7 TCGA-EL-A3MW TCGA-EL-A3MZ 
      101.13        38.66        52.73       126.97       108.66        52.47 
TCGA-EL-A3N2 TCGA-EL-A3N3 TCGA-EM-A1CT TCGA-EM-A1YA TCGA-EM-A1YB TCGA-EM-A1YC 
       12.16       147.42        18.18        19.79        19.46        54.21 
TCGA-EM-A22I TCGA-EM-A22J TCGA-EM-A22O TCGA-EM-A2CO TCGA-EM-A2OY TCGA-EM-A2P1 
       14.70        14.47        11.74         6.02        17.59        17.46 
TCGA-EM-A3FP TCGA-ET-A25G TCGA-ET-A25L TCGA-ET-A25M TCGA-ET-A25O TCGA-ET-A2MY 
       17.39        47.47        14.79        12.33        27.09        22.09 
TCGA-ET-A2N0 TCGA-ET-A39P TCGA-ET-A39T TCGA-ET-A3BT TCGA-ET-A3DO TCGA-ET-A3DW 
       16.08        58.72        59.15        24.72        80.81        24.69 
TCGA-FE-A22Z TCGA-FE-A230 TCGA-FE-A231 TCGA-FE-A232 TCGA-FE-A234 TCGA-FE-A236 
       59.15        59.70        31.59        44.25        68.22        66.77 
TCGA-FE-A237 TCGA-FE-A23A TCGA-FY-A3BL TCGA-IM-A3EB TCGA-J8-A3NZ TCGA-J8-A3O1 
       81.34        81.83         1.15        48.92         2.24        27.19 

$subtype3
TCGA-BJ-A191 TCGA-BJ-A28S TCGA-BJ-A28T TCGA-BJ-A28V TCGA-BJ-A28W TCGA-BJ-A28Z 
        4.80        21.01         2.76         5.10         1.12         1.22 
TCGA-BJ-A291 TCGA-BJ-A3F0 TCGA-CE-A13K TCGA-CE-A27D TCGA-CE-A3MD TCGA-DE-A2OL 
       14.50        14.04         0.53         0.10         0.20         5.98 
TCGA-DJ-A13V TCGA-DJ-A1QI TCGA-DJ-A1QL TCGA-DJ-A1QN TCGA-DJ-A2PQ TCGA-DJ-A2PR 
       11.90        15.02         6.97         8.98        20.48        10.45 
TCGA-DJ-A2PS TCGA-DJ-A2PU TCGA-DJ-A2PW TCGA-DJ-A2Q1 TCGA-DJ-A2Q4 TCGA-DJ-A2Q5 
        1.94        10.26         7.69         9.34         9.44         9.90 
TCGA-DO-A1JZ TCGA-E3-A3E0 TCGA-EL-A3CR TCGA-EL-A3CX TCGA-EL-A3D0 TCGA-EL-A3D1 
       54.90        66.35         7.66        80.91         1.45        74.27 
TCGA-EL-A3GO TCGA-EL-A3GP TCGA-EL-A3GQ TCGA-EL-A3GR TCGA-EL-A3GW TCGA-EL-A3GX 
       39.32         1.41        30.18       102.84        37.25       147.75 
TCGA-EL-A3H2 TCGA-EL-A3H8 TCGA-EL-A3MX TCGA-EL-A3MY TCGA-EM-A1CU TCGA-EM-A1CV 
       33.47       131.15        57.60        17.49        20.91        12.36 
TCGA-EM-A1YE TCGA-EM-A22M TCGA-EM-A22Q TCGA-EM-A2CN TCGA-EM-A2CP TCGA-EM-A2CR 
       54.08        14.50        14.20        23.51         2.96        13.64 
TCGA-EM-A2CS TCGA-EM-A3AI TCGA-EM-A3AO TCGA-EM-A3FJ TCGA-EM-A3FN TCGA-EM-A3FO 
       15.16        17.46        13.38        27.95        12.07        17.49 
TCGA-ET-A2MZ TCGA-ET-A2N1 TCGA-ET-A2N4 TCGA-ET-A39J TCGA-ET-A39L TCGA-ET-A39M 
       12.26        29.19         2.66        71.01        65.33        84.89 
TCGA-ET-A39N TCGA-ET-A39R TCGA-ET-A3BN TCGA-ET-A3BS TCGA-ET-A3BU TCGA-ET-A3BV 
       98.56        57.11        28.24         5.52        38.30        42.21 
TCGA-ET-A3BW TCGA-ET-A3BX TCGA-ET-A3DS TCGA-ET-A3DT TCGA-ET-A3DV TCGA-FE-A233 
        2.37         4.50         0.30        17.98       132.36        24.69 
TCGA-FE-A235 TCGA-FE-A239 TCGA-FY-A3ON TCGA-GE-A2C6 TCGA-H2-A2K9 TCGA-IM-A3ED 
      102.90        33.63         1.51        12.53        11.31        47.41 

subtype1 subtype2 subtype3 
    0.99     0.23     0.10 
subtype1 subtype2 subtype3 
  158.83   147.42   147.75 
subtype1 subtype2 subtype3 
  16.390   21.055   14.500 
[1] "1.0 - 158.8 (16.4)" "0.2 - 147.4 (21.1)" "0.1 - 147.8 (14.5)"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [25] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [43] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [49] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [61] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [67] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [73] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [85] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [97] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[109] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[115] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[127] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[133] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[139] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[145] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[151] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[157] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[175] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[187] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[193] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[199] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[205] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[211] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [25] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [43] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [49] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [61] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [67] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [73] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [85] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [97] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[109] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[115] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[127] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[133] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[139] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[145] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[151] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[157] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[175] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[187] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[193] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[199] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[205] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[211] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [25] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [43] "subtype2" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
 [49] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
 [55] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [61] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [67] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [73] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [79] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [85] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [97] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[109] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[115] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[121] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[127] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[133] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[139] "subtype3" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[145] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[151] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype1"
[157] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[163] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[169] "subtype3" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[175] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
[187] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[193] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[199] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[205] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype3"
[211] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
D3V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IVA STAGE IVC
  subtype1      30       11        14         2         1
  subtype2      30       13        21        14         0
  subtype3      53        9        10         4         3
D3V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 22 22 15  0
  subtype2 13 24 33  8
  subtype3 16 35 25  3
D3V4, multiclass
D3V5, binary
          cls
clus        0  1
  subtype1 33 18
  subtype2 28 41
  subtype3 34 34
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   33   18
  subtype2   28   41
  subtype3   34   34
   clus
vv  subtype1 subtype2 subtype3
  0       33       28       34
  1       18       41       34
          vv
clus       M0 M1 MX
  subtype1 37  1 21
  subtype2 42  1 35
  subtype3 35  3 41
D3V6, multiclass
D3V7, binary
          cls
clus        0  1
  subtype1 42 18
  subtype2 56 22
  subtype3 52 27
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   42   18
  subtype2   56   22
  subtype3   52   27
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       42       56       52
  MALE         18       22       27
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              0                                            34
  subtype2              1                                            54
  subtype3              1                                            65
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                     25
  subtype2                                                                     14
  subtype3                                                                     13
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                   1
  subtype2                                                                   9
  subtype3                                                                   0
D3V8, multiclass
D3V9, binary
          cls
clus        0  1
  subtype1  0 60
  subtype2  9 69
  subtype3  4 75
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    0   60
  subtype2    9   69
  subtype3    4   75
     clus
vv    subtype1 subtype2 subtype3
  NO         0        9        4
  YES       60       69       75
D3V10, binary
          cls
clus        0  1
  subtype1 52  3
  subtype2 66  4
  subtype3 63  4
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   52    3
  subtype2   66    4
  subtype3   63    4
     clus
vv    subtype1 subtype2 subtype3
  NO        52       66       63
  YES        3        4        4
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE
  subtype1           13                       0   47
  subtype2           28                       8   40
  subtype3           14                       2   58
D3V11, multiclass
          vv
clus       R0 R1 R2 RX
  subtype1 47  6  1  5
  subtype2 58 12  0  4
  subtype3 60  3  1  5
D3V12, multiclass
D3V13, continuous
D3V14, binary
          cls
clus        0  1
  subtype1 35 22
  subtype2 27 49
  subtype3 38 39
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   35   22
  subtype2   27   49
  subtype3   38   39
            clus
vv           subtype1 subtype2 subtype3
  MULTIFOCAL       35       27       38
  UNIFOCAL         22       49       39
D3V15, continuous

Clustering(4) Variable = RPPA_CHIERARCHICAL
D4V1, survival
          sevent
clus2       0  1
  subtype1 27  4
  subtype2 88  3
  subtype3 88  6
subtype1 subtype2 subtype3 
      31       91       94 
subtype1 subtype2 subtype3 
       4        3        6 
$subtype1
TCGA-BJ-A192 TCGA-BJ-A2N7 TCGA-DJ-A13R TCGA-DJ-A13S TCGA-DJ-A1QG TCGA-DJ-A2PP 
        8.09         6.02         3.02         8.71         6.97         5.00 
TCGA-DJ-A2Q0 TCGA-DJ-A2QB TCGA-E3-A3DY TCGA-EL-A3CM TCGA-EL-A3CS TCGA-EL-A3CT 
        8.12        10.85        31.07        26.73        45.53        60.95 
TCGA-EL-A3MZ TCGA-EL-A3N3 TCGA-EM-A1YA TCGA-EM-A1YB TCGA-EM-A1YC TCGA-EM-A22I 
       52.47       147.42        19.79        19.46        54.21        14.70 
TCGA-EM-A22J TCGA-EM-A2CO TCGA-EM-A2OV TCGA-EM-A2OY TCGA-ET-A25O TCGA-ET-A2MY 
       14.47         6.02        22.16        17.59        27.09        22.09 
TCGA-ET-A2N0 TCGA-ET-A39T TCGA-ET-A3BT TCGA-FE-A22Z TCGA-FE-A231 TCGA-FE-A237 
       16.08        59.15        24.72        59.15        31.59        81.34 
TCGA-FY-A3BL 
        1.15 

$subtype2
TCGA-BJ-A0Z5 TCGA-BJ-A0Z9 TCGA-BJ-A0ZB TCGA-BJ-A191 TCGA-BJ-A28R TCGA-BJ-A28T 
       14.73         8.25         4.01         4.80         4.87         2.76 
TCGA-BJ-A28Z TCGA-BJ-A290 TCGA-BJ-A2NA TCGA-BJ-A3EZ TCGA-CE-A13K TCGA-CE-A27D 
        1.22        20.58         2.10         1.38         0.53         0.10 
TCGA-CE-A3MD TCGA-CE-A3ME TCGA-DE-A0Y2 TCGA-DJ-A13V TCGA-DJ-A1QD TCGA-DJ-A1QE 
        0.20         0.23        15.42        11.90        10.98        99.98 
TCGA-DJ-A1QF TCGA-DJ-A1QI TCGA-DJ-A1QN TCGA-DJ-A1QO TCGA-DJ-A2PR TCGA-DJ-A2PU 
       18.05        15.02         8.98         1.02        10.45        10.26 
TCGA-DJ-A2PW TCGA-DJ-A2PY TCGA-DJ-A2Q1 TCGA-DJ-A2Q4 TCGA-DJ-A2Q5 TCGA-DJ-A2Q8 
        7.69         8.78         9.34         9.44         9.90         7.07 
TCGA-DO-A1JZ TCGA-DO-A1K0 TCGA-E3-A3E0 TCGA-E3-A3E1 TCGA-E3-A3E3 TCGA-E8-A2EA 
       54.90        21.53        66.35        40.18        30.28        22.29 
TCGA-EL-A3CR TCGA-EL-A3CX TCGA-EL-A3CY TCGA-EL-A3D0 TCGA-EL-A3D1 TCGA-EL-A3D6 
        7.66        80.91         4.18         1.45        74.27       108.36 
TCGA-EL-A3GP TCGA-EL-A3GR TCGA-EL-A3GS TCGA-EL-A3GU TCGA-EL-A3GV TCGA-EL-A3GX 
        1.41       102.84        65.39       124.04        50.37       147.75 
TCGA-EL-A3GY TCGA-EL-A3H4 TCGA-EL-A3H5 TCGA-EL-A3H7 TCGA-EL-A3H8 TCGA-EL-A3MW 
      101.13        38.66        52.73       126.97       131.15       108.66 
TCGA-EL-A3MX TCGA-EL-A3MY TCGA-EL-A3N2 TCGA-EM-A1CU TCGA-EM-A1CV TCGA-EM-A22M 
       57.60        17.49        12.16        20.91        12.36        14.50 
TCGA-EM-A22O TCGA-EM-A2CS TCGA-EM-A2P1 TCGA-EM-A3AO TCGA-EM-A3FO TCGA-ET-A25G 
       11.74        15.16        17.46        13.38        17.49        47.47 
TCGA-ET-A25L TCGA-ET-A2N4 TCGA-ET-A39J TCGA-ET-A39M TCGA-ET-A39R TCGA-ET-A3BN 
       14.79         2.66        71.01        84.89        57.11        28.24 
TCGA-ET-A3BS TCGA-ET-A3BU TCGA-ET-A3BV TCGA-ET-A3BW TCGA-ET-A3BX TCGA-ET-A3DO 
        5.52        38.30        42.21         2.37         4.50        80.81 
TCGA-ET-A3DT TCGA-ET-A3DW TCGA-FE-A230 TCGA-FE-A233 TCGA-FE-A234 TCGA-FE-A235 
       17.98        24.69        59.70        24.69        68.22       102.90 
TCGA-FE-A23A TCGA-FY-A3ON TCGA-GE-A2C6 TCGA-IM-A3EB TCGA-IM-A3ED TCGA-J8-A3NZ 
       81.83         1.51        12.53        48.92        47.41         2.24 
TCGA-J8-A3O1 
       27.19 

$subtype3
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0Z3 TCGA-BJ-A0ZA TCGA-BJ-A0ZC 
       24.79        13.78        18.21        16.34        18.87        11.57 
TCGA-BJ-A0ZE TCGA-BJ-A0ZG TCGA-BJ-A0ZJ TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A28S 
       16.73         7.56        17.69        23.34        20.58        21.01 
TCGA-BJ-A28V TCGA-BJ-A28W TCGA-BJ-A291 TCGA-BJ-A3F0 TCGA-DE-A2OL TCGA-DE-A3KN 
        5.10         1.12        14.50        14.04         5.98        15.85 
TCGA-DJ-A13M TCGA-DJ-A13O TCGA-DJ-A13W TCGA-DJ-A13X TCGA-DJ-A1QL TCGA-DJ-A1QM 
        9.01         7.07        14.93         7.99         6.97         0.99 
TCGA-DJ-A2PN TCGA-DJ-A2PO TCGA-DJ-A2PQ TCGA-DJ-A2PS TCGA-DJ-A2PV TCGA-DJ-A2PZ 
       10.06         7.96        20.48         1.94         7.96         8.42 
TCGA-DJ-A2Q2 TCGA-DJ-A2Q6 TCGA-DJ-A2Q7 TCGA-DJ-A2Q9 TCGA-DJ-A2QA TCGA-DJ-A2QC 
        6.77         8.61         9.57        10.36        12.43         9.99 
TCGA-E3-A3DZ TCGA-E3-A3E5 TCGA-EL-A3CL TCGA-EL-A3CN TCGA-EL-A3CO TCGA-EL-A3CP 
       12.07        14.04        31.63       155.54        97.74       158.83 
TCGA-EL-A3CU TCGA-EL-A3CV TCGA-EL-A3CW TCGA-EL-A3CZ TCGA-EL-A3D4 TCGA-EL-A3D5 
      157.15        37.94        57.01        58.78        45.40        33.44 
TCGA-EL-A3GO TCGA-EL-A3GQ TCGA-EL-A3GW TCGA-EL-A3H1 TCGA-EL-A3H2 TCGA-EM-A1CT 
       39.32        30.18        37.25        49.32        33.47        18.18 
TCGA-EM-A1CW TCGA-EM-A1YD TCGA-EM-A1YE TCGA-EM-A22L TCGA-EM-A22Q TCGA-EM-A2CJ 
       18.05        57.01        54.08        10.45        14.20        16.44 
TCGA-EM-A2CK TCGA-EM-A2CL TCGA-EM-A2CN TCGA-EM-A2CP TCGA-EM-A2CQ TCGA-EM-A2CR 
       17.85        13.18        23.51         2.96        12.30        13.64 
TCGA-EM-A2CU TCGA-EM-A3AI TCGA-EM-A3AJ TCGA-EM-A3AL TCGA-EM-A3AN TCGA-EM-A3AP 
       13.12        17.46        18.94        14.14        19.63         8.35 
TCGA-EM-A3FJ TCGA-EM-A3FL TCGA-EM-A3FN TCGA-EM-A3FP TCGA-ET-A25M TCGA-ET-A2MZ 
       27.95        16.77        12.07        17.39        12.33        12.26 
TCGA-ET-A2N1 TCGA-ET-A2N5 TCGA-ET-A39I TCGA-ET-A39L TCGA-ET-A39N TCGA-ET-A39P 
       29.19        58.22        13.74        65.33        98.56        58.72 
TCGA-ET-A3BP TCGA-ET-A3DP TCGA-ET-A3DS TCGA-ET-A3DV TCGA-FE-A232 TCGA-FE-A236 
        4.18        56.88         0.30       132.36        44.25        66.77 
TCGA-FE-A239 TCGA-FY-A2QD TCGA-H2-A2K9 TCGA-J8-A3O0 
       33.63         1.25        11.31        43.17 

subtype1 subtype2 subtype3 
    1.15     0.10     0.30 
subtype1 subtype2 subtype3 
  147.42   147.75   158.83 
subtype1 subtype2 subtype3 
  19.790   17.460   16.585 
[1] "1.1 - 147.4 (19.8)" "0.1 - 147.8 (17.5)" "0.3 - 158.8 (16.6)"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
  [7] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [19] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [25] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [37] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [49] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [55] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [61] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [73] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [79] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [85] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [91] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[103] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[127] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[133] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[145] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[151] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[157] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[169] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[181] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[193] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[199] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[205] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[211] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
  [7] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [19] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [25] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [37] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [49] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [55] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [61] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [73] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [79] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [85] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [91] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[103] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[127] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[133] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[145] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[151] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[157] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[169] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[181] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[193] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[199] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[205] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[211] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
  [7] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
 [13] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
 [19] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [25] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [31] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [37] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [43] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [49] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [55] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [61] "subtype2" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [67] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [73] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [79] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [85] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [91] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[103] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[109] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[115] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[127] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[133] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[145] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[151] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[157] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[163] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[169] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[175] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[181] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[193] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[199] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[205] "subtype3" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[211] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
D4V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IVA STAGE IVC
  subtype1       8        9         8         6         0
  subtype2      53        7        20        10         2
  subtype3      52       17        17         4         2
D4V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1  6 11 10  4
  subtype2 15 33 37  6
  subtype3 30 37 26  1
D4V4, multiclass
D4V5, binary
          cls
clus        0  1
  subtype1 13 11
  subtype2 28 55
  subtype3 54 27
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   13   11
  subtype2   28   55
  subtype3   54   27
   clus
vv  subtype1 subtype2 subtype3
  0       13       28       54
  1       11       55       27
          vv
clus       M0 M1 MX
  subtype1 14  0 17
  subtype2 54  3 35
  subtype3 46  2 45
D4V6, multiclass
D4V7, binary
          cls
clus        0  1
  subtype1 24  7
  subtype2 64 28
  subtype3 62 32
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   24    7
  subtype2   64   28
  subtype3   62   32
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       24       64       62
  MALE          7       28       32
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              1                                            15
  subtype2              1                                            81
  subtype3              0                                            57
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                     14
  subtype2                                                                      2
  subtype3                                                                     36
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                   1
  subtype2                                                                   8
  subtype3                                                                   1
D4V8, multiclass
D4V9, binary
          cls
clus        0  1
  subtype1  3 28
  subtype2  7 85
  subtype3  3 91
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3   28
  subtype2    7   85
  subtype3    3   91
     clus
vv    subtype1 subtype2 subtype3
  NO         3        7        3
  YES       28       85       91
D4V10, binary
          cls
clus        0  1
  subtype1 25  4
  subtype2 75  4
  subtype3 81  3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   25    4
  subtype2   75    4
  subtype3   81    3
     clus
vv    subtype1 subtype2 subtype3
  NO        25       75       81
  YES        4        4        3
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE
  subtype1            8                       4   19
  subtype2           31                       6   52
  subtype3           16                       0   74
D4V11, multiclass
          vv
clus       R0 R1 R2 RX
  subtype1 26  2  0  3
  subtype2 68 11  1  4
  subtype3 71  8  1  7
D4V12, multiclass
D4V13, continuous
D4V14, binary
          cls
clus        0  1
  subtype1 11 19
  subtype2 40 49
  subtype3 49 42
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   11   19
  subtype2   40   49
  subtype3   49   42
            clus
vv           subtype1 subtype2 subtype3
  MULTIFOCAL       11       40       49
  UNIFOCAL         19       49       42
D4V15, continuous

Clustering(5) Variable = MRNASEQ_CNMF
D5V1, survival
          sevent
clus2        0   1
  subtype1 145   4
  subtype2  47   1
  subtype3 114   2
  subtype4 151   7
subtype1 subtype2 subtype3 subtype4 
     149       48      116      158 
subtype1 subtype2 subtype3 subtype4 
       4        1        2        7 
$subtype1
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0ZA TCGA-BJ-A0ZC TCGA-BJ-A0ZE 
       24.79        13.78        18.21        18.87        11.57        16.73 
TCGA-BJ-A0ZG TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A191 TCGA-BJ-A192 TCGA-BJ-A28S 
        7.56        23.34        20.58         4.80         8.09        21.01 
TCGA-BJ-A28V TCGA-BJ-A291 TCGA-BJ-A2N7 TCGA-BJ-A2N8 TCGA-BJ-A3F0 TCGA-BJ-A3PT 
        5.10        14.50         6.02        16.57        14.04        12.07 
TCGA-BJ-A45C TCGA-BJ-A45D TCGA-BJ-A45F TCGA-BJ-A45G TCGA-BJ-A45K TCGA-CE-A484 
        5.72         6.48         3.45         6.35         8.98         0.39 
TCGA-DE-A2OL TCGA-DE-A4M9 TCGA-DJ-A13M TCGA-DJ-A13O TCGA-DJ-A13R TCGA-DJ-A13S 
        5.98         4.87         9.01         7.07         3.02         8.71 
TCGA-DJ-A13W TCGA-DJ-A1QG TCGA-DJ-A1QL TCGA-DJ-A1QM TCGA-DJ-A2PP TCGA-DJ-A2Q0 
       14.93         6.97         6.97         0.99         5.00         8.12 
TCGA-DJ-A2Q2 TCGA-DJ-A2QB TCGA-DJ-A3UP TCGA-DJ-A3US TCGA-DJ-A3UT TCGA-DJ-A3UZ 
        6.77        10.85        16.37        32.81        15.42        12.76 
TCGA-DJ-A3V4 TCGA-DJ-A3VG TCGA-DJ-A3VL TCGA-DJ-A3VM TCGA-DJ-A4UR TCGA-DJ-A4V0 
       14.56         8.32        17.19        27.62        10.98         9.34 
TCGA-E3-A3DZ TCGA-E8-A415 TCGA-E8-A416 TCGA-E8-A434 TCGA-EL-A3CO TCGA-EL-A3CX 
       12.07        13.81        14.07        14.10        97.74        80.91 
TCGA-EL-A3CZ TCGA-EL-A3D5 TCGA-EL-A3GO TCGA-EL-A3GW TCGA-EL-A3H1 TCGA-EL-A3H2 
       58.78        33.44        39.32        37.25        49.32        33.47 
TCGA-EL-A3T0 TCGA-EL-A3T2 TCGA-EL-A3ZH TCGA-EL-A3ZR TCGA-EL-A4JV TCGA-EL-A4K2 
      130.72        32.48        78.97        48.16        45.80        19.53 
TCGA-EL-A4K6 TCGA-EL-A4KD TCGA-EL-A4KI TCGA-EM-A1CW TCGA-EM-A1YA TCGA-EM-A1YB 
       28.73        29.95         8.68        18.05        19.79        19.46 
TCGA-EM-A1YC TCGA-EM-A1YD TCGA-EM-A1YE TCGA-EM-A22J TCGA-EM-A22K TCGA-EM-A22L 
       54.21        57.01        54.08        14.47        15.72        10.45 
TCGA-EM-A22N TCGA-EM-A22Q TCGA-EM-A2CJ TCGA-EM-A2CK TCGA-EM-A2CL TCGA-EM-A2CN 
       10.65        14.20        16.44        17.85        13.18        23.51 
TCGA-EM-A2CO TCGA-EM-A2CP TCGA-EM-A2CQ TCGA-EM-A2CR TCGA-EM-A2CT TCGA-EM-A2OV 
        6.02         2.96        12.30        13.64        10.49        22.16 
TCGA-EM-A2OW TCGA-EM-A2OY TCGA-EM-A2P2 TCGA-EM-A3AI TCGA-EM-A3AJ TCGA-EM-A3AL 
       13.84        17.59        17.29        17.46        18.94        14.14 
TCGA-EM-A3AP TCGA-EM-A3AR TCGA-EM-A3FL TCGA-EM-A3FN TCGA-EM-A3FP TCGA-EM-A3FR 
        8.35        16.77        16.77        12.07        17.39        15.02 
TCGA-EM-A3O6 TCGA-EM-A3O8 TCGA-EM-A3O9 TCGA-EM-A3OA TCGA-EM-A3OB TCGA-EM-A3ST 
       11.15        12.53         9.24        13.91         7.82        11.51 
TCGA-EM-A3SY TCGA-EM-A4FH TCGA-EM-A4FK TCGA-EM-A4FR TCGA-EM-A4FU TCGA-EM-A4G1 
       13.51        16.90         8.98         5.03        37.87         0.95 
TCGA-ET-A25I TCGA-ET-A25P TCGA-ET-A2N3 TCGA-ET-A2N5 TCGA-ET-A39I TCGA-ET-A39L 
       48.20        18.35        19.76        58.22        13.74        65.33 
TCGA-ET-A39N TCGA-ET-A39S TCGA-ET-A3DQ TCGA-ET-A3DR TCGA-ET-A3DS TCGA-ET-A3DV 
       98.56        55.10        59.87        43.50         0.30       132.36 
TCGA-ET-A40P TCGA-ET-A4KQ TCGA-FE-A239 TCGA-FK-A3SD TCGA-FY-A2QD TCGA-FY-A3I5 
        3.22         1.94        33.63         0.89         1.25         1.64 
TCGA-FY-A3NM TCGA-FY-A3NP TCGA-FY-A3R7 TCGA-FY-A3R9 TCGA-FY-A3W9 TCGA-FY-A3WA 
        0.99        16.14         0.03        16.57         0.76         0.95 
TCGA-FY-A40M TCGA-FY-A40N TCGA-H2-A2K9 TCGA-H2-A3RH TCGA-IM-A41Z TCGA-J8-A3O0 
        4.54         0.89        11.31        12.46         9.63        43.17 
TCGA-J8-A3YD TCGA-J8-A4HY TCGA-KS-A41I TCGA-KS-A41L TCGA-KS-A4ID 
       31.82         0.20        15.95        86.70        20.48 

$subtype2
TCGA-BJ-A0Z3 TCGA-BJ-A0ZJ TCGA-BJ-A28T TCGA-BJ-A28X TCGA-BJ-A28Z TCGA-BJ-A3PR 
       16.34        17.69         2.76        17.49         1.22         8.02 
TCGA-CE-A27D TCGA-CE-A481 TCGA-CE-A485 TCGA-DE-A4M8 TCGA-DJ-A2PX TCGA-DJ-A2Q1 
        0.10         0.10         0.10         6.08         5.03         9.34 
TCGA-DJ-A2Q3 TCGA-DJ-A2Q9 TCGA-DJ-A3UW TCGA-DJ-A3UX TCGA-DJ-A3VD TCGA-DJ-A4UT 
        9.21        10.36        43.00        11.34        21.01        12.20 
TCGA-DO-A2HM TCGA-E8-A2EA TCGA-E8-A413 TCGA-E8-A414 TCGA-E8-A44M TCGA-EL-A3CU 
        2.30        22.29        13.61        14.27        13.58       157.15 
TCGA-EL-A3CV TCGA-EL-A3CW TCGA-EL-A3CY TCGA-EL-A3GP TCGA-EL-A3H5 TCGA-EL-A3TA 
       37.94        57.01         4.18         1.41        52.73        66.90 
TCGA-EL-A3ZP TCGA-EL-A3ZS TCGA-EL-A4JZ TCGA-EM-A22P TCGA-EM-A2P1 TCGA-EM-A3FQ 
       52.50         7.04        37.94        11.15        17.46        16.18 
TCGA-EM-A3O3 TCGA-EM-A4FO TCGA-ET-A39R TCGA-ET-A3BO TCGA-ET-A3DT TCGA-ET-A40R 
       14.50         8.35        57.11         5.82        17.98         4.80 
TCGA-ET-A40S TCGA-FE-A3PB TCGA-FY-A3R6 TCGA-GE-A2C6 TCGA-H2-A26U TCGA-J8-A3O2 
        5.00        85.12         0.76        12.53        10.98         1.35 

$subtype3
TCGA-BJ-A0Z5 TCGA-BJ-A290 TCGA-BJ-A45H TCGA-BJ-A45J TCGA-BJ-A4O9 TCGA-CE-A13K 
       14.73        20.58         7.79         5.06         5.95         0.53 
TCGA-CE-A3MD TCGA-CE-A482 TCGA-DE-A0XZ TCGA-DE-A3KN TCGA-DJ-A13P TCGA-DJ-A13T 
        0.20         0.07        20.22        15.85       138.05        24.92 
TCGA-DJ-A13V TCGA-DJ-A13X TCGA-DJ-A1QF TCGA-DJ-A1QI TCGA-DJ-A1QN TCGA-DJ-A2PO 
       11.90         7.99        18.05        15.02         8.98         7.96 
TCGA-DJ-A2PQ TCGA-DJ-A2PR TCGA-DJ-A2PS TCGA-DJ-A2PU TCGA-DJ-A2PV TCGA-DJ-A2PW 
       20.48        10.45         1.94        10.26         7.96         7.69 
TCGA-DJ-A2Q5 TCGA-DJ-A2Q6 TCGA-DJ-A2Q7 TCGA-DJ-A2QA TCGA-DJ-A2QC TCGA-DJ-A3UK 
        9.90         8.61         9.57        12.43         9.99        15.09 
TCGA-DJ-A3UN TCGA-DJ-A3UO TCGA-DJ-A3UR TCGA-DJ-A3UU TCGA-DJ-A3V2 TCGA-DJ-A3V3 
       12.49        31.43        36.33        17.69        20.22        30.58 
TCGA-DJ-A3V9 TCGA-DJ-A3VA TCGA-DJ-A3VE TCGA-DJ-A4UL TCGA-DJ-A4UW TCGA-DO-A1JZ 
       20.48        11.93        18.94        11.93         9.44        54.90 
TCGA-E3-A3DY TCGA-E3-A3E0 TCGA-E3-A3E2 TCGA-E3-A3E5 TCGA-E8-A432 TCGA-E8-A438 
       31.07        66.35        63.16        14.04        14.43        20.68 
TCGA-EL-A3CL TCGA-EL-A3CP TCGA-EL-A3D0 TCGA-EL-A3D1 TCGA-EL-A3GQ TCGA-EL-A3GV 
       31.63       158.83         1.45        74.27        30.18        50.37 
TCGA-EL-A3MW TCGA-EL-A3MX TCGA-EL-A3T7 TCGA-EL-A3T8 TCGA-EL-A3TB TCGA-EL-A3ZG 
      108.66        57.60        41.29        95.38        82.82        77.33 
TCGA-EL-A3ZL TCGA-EL-A3ZQ TCGA-EL-A4K0 TCGA-EL-A4K7 TCGA-EL-A4K9 TCGA-EL-A4KH 
       50.30        45.53        19.00        41.13        37.78        11.87 
TCGA-EM-A1CS TCGA-EM-A1CV TCGA-EM-A2CS TCGA-EM-A2CU TCGA-EM-A2OX TCGA-EM-A3AK 
       26.86        12.36        15.16        13.12        19.73        15.68 
TCGA-EM-A3AN TCGA-EM-A3AO TCGA-EM-A3AQ TCGA-EM-A3FJ TCGA-EM-A3O7 TCGA-EM-A3SX 
       19.63        13.38        16.44        27.95         7.33        15.62 
TCGA-EM-A4FV TCGA-ET-A25K TCGA-ET-A25O TCGA-ET-A2MZ TCGA-ET-A2N4 TCGA-ET-A39J 
       12.72        32.35        27.09        12.26         2.66        71.01 
TCGA-ET-A39K TCGA-ET-A39M TCGA-ET-A3BP TCGA-ET-A3BQ TCGA-ET-A3BS TCGA-ET-A3BW 
       72.49        84.89         4.18         2.43         5.52         2.37 
TCGA-ET-A3DP TCGA-ET-A40T TCGA-FE-A235 TCGA-FE-A3PA TCGA-FE-A3PC TCGA-FE-A3PD 
       56.88         2.10       102.90        94.42        85.64        78.77 
TCGA-FK-A3S3 TCGA-FK-A3SB TCGA-FK-A3SG TCGA-FK-A3SH TCGA-FK-A4UB TCGA-FY-A40K 
       46.06         4.08         0.92        48.10        91.13         4.14 
TCGA-H2-A3RI TCGA-J8-A3YH TCGA-J8-A42S TCGA-KS-A41F TCGA-KS-A4I1 TCGA-KS-A4I5 
        2.96         5.72         2.47       120.99         5.98         6.71 
TCGA-KS-A4I7 TCGA-KS-A4IB TCGA-KS-A4IC TCGA-L6-A4EP TCGA-L6-A4EQ TCGA-L6-A4ET 
       12.36        64.54        14.70         0.59        11.87         1.12 
TCGA-MK-A4N7 TCGA-MK-A4N9 
       14.47         8.71 

$subtype4
TCGA-BJ-A0Z9 TCGA-BJ-A0ZB TCGA-BJ-A0ZH TCGA-BJ-A28R TCGA-BJ-A2NA TCGA-BJ-A3EZ 
        8.25         4.01        15.12         4.87         2.10         1.38 
TCGA-BJ-A3PU TCGA-BJ-A45I TCGA-BJ-A4O8 TCGA-CE-A3ME TCGA-CE-A483 TCGA-DE-A0Y2 
       10.03         6.15         4.93         0.23         0.10        15.42 
TCGA-DE-A0Y3 TCGA-DE-A4MA TCGA-DE-A4MB TCGA-DE-A4MC TCGA-DE-A4MD TCGA-DJ-A13U 
       36.46        30.12        11.57        17.39        12.00        12.92 
TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QH TCGA-DJ-A1QO TCGA-DJ-A1QQ TCGA-DJ-A2PN 
       10.98        99.98         7.99         1.02         5.95        10.06 
TCGA-DJ-A2PT TCGA-DJ-A2PY TCGA-DJ-A2PZ TCGA-DJ-A2Q4 TCGA-DJ-A3UM TCGA-DJ-A3UQ 
        9.60         8.78         8.42         9.44        31.04        19.56 
TCGA-DJ-A3UY TCGA-DJ-A3V0 TCGA-DJ-A3V5 TCGA-DJ-A3V7 TCGA-DJ-A3V8 TCGA-DJ-A3VB 
       21.37        25.02        19.20         9.83        21.27        22.92 
TCGA-DJ-A3VF TCGA-DJ-A3VJ TCGA-DJ-A4UQ TCGA-DJ-A4V2 TCGA-DJ-A4V4 TCGA-DJ-A4V5 
        7.73        17.36        10.78         3.09         3.35        16.14 
TCGA-DO-A1K0 TCGA-E3-A3E1 TCGA-E3-A3E3 TCGA-E8-A242 TCGA-E8-A3X7 TCGA-E8-A417 
       21.53        40.18        30.28         1.12         1.48        14.27 
TCGA-E8-A418 TCGA-E8-A433 TCGA-E8-A436 TCGA-E8-A437 TCGA-E8-A44K TCGA-EL-A3CM 
        1.48        14.70        14.96         7.69        13.78        26.73 
TCGA-EL-A3CN TCGA-EL-A3CR TCGA-EL-A3CS TCGA-EL-A3CT TCGA-EL-A3D6 TCGA-EL-A3GR 
      155.54         7.66        45.53        60.95       108.36       102.84 
TCGA-EL-A3GS TCGA-EL-A3GU TCGA-EL-A3GX TCGA-EL-A3GY TCGA-EL-A3H4 TCGA-EL-A3H7 
       65.39       124.04       147.75       101.13        38.66       126.97 
TCGA-EL-A3H8 TCGA-EL-A3MY TCGA-EL-A3MZ TCGA-EL-A3N2 TCGA-EL-A3N3 TCGA-EL-A3T1 
      131.15        17.49        52.47        12.16       147.42       129.57 
TCGA-EL-A3T3 TCGA-EL-A3T6 TCGA-EL-A3T9 TCGA-EL-A3ZK TCGA-EL-A3ZT TCGA-EL-A4JW 
      116.91        98.20         5.72        31.46        44.61        19.27 
TCGA-EL-A4JX TCGA-EL-A4K1 TCGA-EL-A4K4 TCGA-EL-A4KG TCGA-EM-A1CT TCGA-EM-A1CU 
       45.96        19.59        33.60        13.32        18.18        20.91 
TCGA-EM-A22I TCGA-EM-A22O TCGA-EM-A2OZ TCGA-EM-A2P0 TCGA-EM-A2P3 TCGA-EM-A3FK 
       14.70        11.74        12.07        17.59        14.60        23.77 
TCGA-EM-A3FM TCGA-EM-A3FO TCGA-EM-A3SU TCGA-EM-A3SZ TCGA-EM-A4FF TCGA-EM-A4FM 
       21.01        17.49        16.41        12.79        70.62         4.80 
TCGA-EM-A4FN TCGA-EM-A4FQ TCGA-ET-A25G TCGA-ET-A25J TCGA-ET-A25L TCGA-ET-A25M 
        8.58         9.80        47.47        29.69        14.79        12.33 
TCGA-ET-A25N TCGA-ET-A25R TCGA-ET-A2MX TCGA-ET-A2MY TCGA-ET-A2N0 TCGA-ET-A39O 
       14.79        20.42        54.02        22.09        16.08        61.02 
TCGA-ET-A39P TCGA-ET-A39T TCGA-ET-A3BN TCGA-ET-A3BT TCGA-ET-A3BU TCGA-ET-A3BV 
       58.72        59.15        28.24        24.72        38.30        42.21 
TCGA-ET-A3BX TCGA-ET-A3DO TCGA-ET-A3DW TCGA-ET-A40Q TCGA-ET-A4KN TCGA-FE-A22Z 
        4.50        80.81        24.69         7.17         4.01        59.15 
TCGA-FE-A230 TCGA-FE-A231 TCGA-FE-A233 TCGA-FE-A234 TCGA-FE-A236 TCGA-FE-A237 
       59.70        31.59        24.69        68.22        66.77        81.34 
TCGA-FE-A238 TCGA-FE-A23A TCGA-FK-A3SE TCGA-FY-A3BL TCGA-FY-A3I4 TCGA-FY-A3ON 
       39.95        81.83        21.99         1.15         1.12         1.51 
TCGA-FY-A3R8 TCGA-FY-A3RA TCGA-FY-A3YR TCGA-FY-A40L TCGA-FY-A4B3 TCGA-FY-A4B4 
        4.64        18.08         6.84         6.54         1.35         1.15 
TCGA-H2-A421 TCGA-H2-A422 TCGA-IM-A3EB TCGA-IM-A3ED TCGA-IM-A3U2 TCGA-IM-A3U3 
        2.20         2.89        48.92        47.41        10.26        16.87 
TCGA-IM-A41Y TCGA-IM-A420 TCGA-IM-A4EB TCGA-J8-A3NZ TCGA-J8-A3O1 TCGA-J8-A3YE 
        9.80         2.96         8.65         2.24        27.19        27.81 
TCGA-J8-A3YF TCGA-J8-A3YG TCGA-J8-A4HW TCGA-KS-A41J TCGA-KS-A4I3 TCGA-KS-A4I9 
       24.69        22.29         2.60        15.68        12.03        17.42 
TCGA-L6-A4EU TCGA-MK-A4N6 
        0.72        16.60 

subtype1 subtype2 subtype3 subtype4 
    0.03     0.10     0.07     0.10 
subtype1 subtype2 subtype3 subtype4 
  132.36   157.15   158.83   155.54 
subtype1 subtype2 subtype3 subtype4 
  14.100   11.770   15.125   17.115 
[1] "0.0 - 132.4 (14.1)" "0.1 - 157.2 (11.8)" "0.1 - 158.8 (15.1)"
[4] "0.1 - 155.5 (17.1)"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype4"
  [7] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype4"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
 [19] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype1" "subtype1" "subtype1" "subtype4" "subtype4" "subtype1"
 [31] "subtype2" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype3" "subtype4" "subtype3" "subtype1" "subtype4"
 [43] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype2"
 [49] "subtype3" "subtype4" "subtype1" "subtype2" "subtype3" "subtype4"
 [55] "subtype4" "subtype1" "subtype3" "subtype2" "subtype1" "subtype4"
 [61] "subtype4" "subtype4" "subtype4" "subtype1" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype3" "subtype4" "subtype3" "subtype1"
 [73] "subtype3" "subtype4" "subtype4" "subtype3" "subtype1" "subtype4"
 [79] "subtype3" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
 [85] "subtype4" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype4" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
 [97] "subtype4" "subtype1" "subtype2" "subtype1" "subtype2" "subtype4"
[103] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[109] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype1"
[115] "subtype4" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[121] "subtype2" "subtype4" "subtype1" "subtype4" "subtype3" "subtype3"
[127] "subtype1" "subtype4" "subtype4" "subtype4" "subtype3" "subtype3"
[133] "subtype4" "subtype2" "subtype3" "subtype4" "subtype1" "subtype4"
[139] "subtype1" "subtype1" "subtype3" "subtype4" "subtype1" "subtype2"
[145] "subtype3" "subtype1" "subtype4" "subtype4" "subtype4" "subtype3"
[151] "subtype4" "subtype2" "subtype3" "subtype1" "subtype3" "subtype4"
[157] "subtype3" "subtype4" "subtype3" "subtype4" "subtype2" "subtype4"
[163] "subtype2" "subtype2" "subtype1" "subtype1" "subtype4" "subtype4"
[169] "subtype3" "subtype4" "subtype1" "subtype4" "subtype4" "subtype3"
[175] "subtype4" "subtype2" "subtype3" "subtype4" "subtype4" "subtype1"
[181] "subtype3" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
[187] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[193] "subtype1" "subtype4" "subtype1" "subtype2" "subtype3" "subtype4"
[199] "subtype4" "subtype4" "subtype3" "subtype1" "subtype4" "subtype4"
[205] "subtype1" "subtype1" "subtype4" "subtype2" "subtype4" "subtype4"
[211] "subtype3" "subtype3" "subtype4" "subtype4" "subtype4" "subtype4"
[217] "subtype1" "subtype4" "subtype1" "subtype4" "subtype4" "subtype3"
[223] "subtype3" "subtype4" "subtype2" "subtype3" "subtype3" "subtype1"
[229] "subtype4" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[235] "subtype4" "subtype1" "subtype4" "subtype4" "subtype2" "subtype3"
[241] "subtype4" "subtype1" "subtype4" "subtype1" "subtype3" "subtype3"
[247] "subtype1" "subtype4" "subtype3" "subtype1" "subtype3" "subtype4"
[253] "subtype4" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[259] "subtype1" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[265] "subtype1" "subtype4" "subtype2" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[277] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[283] "subtype1" "subtype4" "subtype4" "subtype2" "subtype1" "subtype4"
[289] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[295] "subtype1" "subtype3" "subtype1" "subtype3" "subtype4" "subtype1"
[301] "subtype4" "subtype1" "subtype4" "subtype1" "subtype2" "subtype1"
[307] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[313] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype4"
[319] "subtype4" "subtype1" "subtype1" "subtype4" "subtype4" "subtype2"
[325] "subtype4" "subtype1" "subtype1" "subtype3" "subtype1" "subtype4"
[331] "subtype1" "subtype4" "subtype3" "subtype4" "subtype4" "subtype4"
[337] "subtype3" "subtype1" "subtype4" "subtype4" "subtype4" "subtype3"
[343] "subtype4" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[349] "subtype3" "subtype1" "subtype3" "subtype1" "subtype4" "subtype4"
[355] "subtype2" "subtype1" "subtype4" "subtype4" "subtype2" "subtype3"
[361] "subtype3" "subtype3" "subtype4" "subtype4" "subtype4" "subtype3"
[367] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[373] "subtype2" "subtype1" "subtype4" "subtype1" "subtype4" "subtype2"
[379] "subtype2" "subtype3" "subtype4" "subtype1" "subtype4" "subtype4"
[385] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype4"
[391] "subtype4" "subtype1" "subtype4" "subtype3" "subtype2" "subtype3"
[397] "subtype3" "subtype3" "subtype3" "subtype1" "subtype4" "subtype3"
[403] "subtype3" "subtype3" "subtype1" "subtype4" "subtype4" "subtype1"
[409] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype4"
[415] "subtype1" "subtype4" "subtype1" "subtype1" "subtype4" "subtype3"
[421] "subtype4" "subtype1" "subtype1" "subtype4" "subtype4" "subtype2"
[427] "subtype2" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
[433] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype1"
[439] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype2"
[445] "subtype1" "subtype4" "subtype4" "subtype4" "subtype3" "subtype3"
[451] "subtype4" "subtype1" "subtype3" "subtype1" "subtype4" "subtype1"
[457] "subtype3" "subtype4" "subtype3" "subtype3" "subtype4" "subtype3"
[463] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype4"
[469] "subtype4" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype4"
  [7] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype4"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
 [19] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype1" "subtype1" "subtype1" "subtype4" "subtype4" "subtype1"
 [31] "subtype2" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype3" "subtype4" "subtype3" "subtype1" "subtype4"
 [43] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype2"
 [49] "subtype3" "subtype4" "subtype1" "subtype2" "subtype3" "subtype4"
 [55] "subtype4" "subtype1" "subtype3" "subtype2" "subtype1" "subtype4"
 [61] "subtype4" "subtype4" "subtype4" "subtype1" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype3" "subtype4" "subtype3" "subtype1"
 [73] "subtype3" "subtype4" "subtype4" "subtype3" "subtype1" "subtype4"
 [79] "subtype3" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
 [85] "subtype4" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype4" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
 [97] "subtype4" "subtype1" "subtype2" "subtype1" "subtype2" "subtype4"
[103] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[109] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype1"
[115] "subtype4" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[121] "subtype2" "subtype4" "subtype1" "subtype4" "subtype3" "subtype3"
[127] "subtype1" "subtype4" "subtype4" "subtype4" "subtype3" "subtype3"
[133] "subtype4" "subtype2" "subtype3" "subtype4" "subtype1" "subtype4"
[139] "subtype1" "subtype1" "subtype3" "subtype4" "subtype1" "subtype2"
[145] "subtype3" "subtype1" "subtype4" "subtype4" "subtype4" "subtype3"
[151] "subtype4" "subtype2" "subtype3" "subtype1" "subtype3" "subtype4"
[157] "subtype3" "subtype4" "subtype3" "subtype4" "subtype2" "subtype4"
[163] "subtype2" "subtype2" "subtype1" "subtype1" "subtype4" "subtype4"
[169] "subtype3" "subtype4" "subtype1" "subtype4" "subtype4" "subtype3"
[175] "subtype4" "subtype2" "subtype3" "subtype4" "subtype4" "subtype1"
[181] "subtype3" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
[187] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[193] "subtype1" "subtype4" "subtype1" "subtype2" "subtype3" "subtype4"
[199] "subtype4" "subtype4" "subtype3" "subtype1" "subtype4" "subtype4"
[205] "subtype1" "subtype1" "subtype4" "subtype2" "subtype4" "subtype4"
[211] "subtype3" "subtype3" "subtype4" "subtype4" "subtype4" "subtype4"
[217] "subtype1" "subtype4" "subtype1" "subtype4" "subtype4" "subtype3"
[223] "subtype3" "subtype4" "subtype2" "subtype3" "subtype3" "subtype1"
[229] "subtype4" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[235] "subtype4" "subtype1" "subtype4" "subtype4" "subtype2" "subtype3"
[241] "subtype4" "subtype1" "subtype4" "subtype1" "subtype3" "subtype3"
[247] "subtype1" "subtype4" "subtype3" "subtype1" "subtype3" "subtype4"
[253] "subtype4" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[259] "subtype1" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[265] "subtype1" "subtype4" "subtype2" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[277] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[283] "subtype1" "subtype4" "subtype4" "subtype2" "subtype1" "subtype4"
[289] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[295] "subtype1" "subtype3" "subtype1" "subtype3" "subtype4" "subtype1"
[301] "subtype4" "subtype1" "subtype4" "subtype1" "subtype2" "subtype1"
[307] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[313] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype4"
[319] "subtype4" "subtype1" "subtype1" "subtype4" "subtype4" "subtype2"
[325] "subtype4" "subtype1" "subtype1" "subtype3" "subtype1" "subtype4"
[331] "subtype1" "subtype4" "subtype3" "subtype4" "subtype4" "subtype4"
[337] "subtype3" "subtype1" "subtype4" "subtype4" "subtype4" "subtype3"
[343] "subtype4" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[349] "subtype3" "subtype1" "subtype3" "subtype1" "subtype4" "subtype4"
[355] "subtype2" "subtype1" "subtype4" "subtype4" "subtype2" "subtype3"
[361] "subtype3" "subtype3" "subtype4" "subtype4" "subtype4" "subtype3"
[367] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[373] "subtype2" "subtype1" "subtype4" "subtype1" "subtype4" "subtype2"
[379] "subtype2" "subtype3" "subtype4" "subtype1" "subtype4" "subtype4"
[385] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype4"
[391] "subtype4" "subtype1" "subtype4" "subtype3" "subtype2" "subtype3"
[397] "subtype3" "subtype3" "subtype3" "subtype1" "subtype4" "subtype3"
[403] "subtype3" "subtype3" "subtype1" "subtype4" "subtype4" "subtype1"
[409] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype4"
[415] "subtype1" "subtype4" "subtype1" "subtype1" "subtype4" "subtype3"
[421] "subtype4" "subtype1" "subtype1" "subtype4" "subtype4" "subtype2"
[427] "subtype2" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
[433] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype1"
[439] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype2"
[445] "subtype1" "subtype4" "subtype4" "subtype4" "subtype3" "subtype3"
[451] "subtype4" "subtype1" "subtype3" "subtype1" "subtype4" "subtype1"
[457] "subtype3" "subtype4" "subtype3" "subtype3" "subtype4" "subtype3"
[463] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype4"
[469] "subtype4" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype4"
  [7] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype4"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype4"
 [19] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [25] "subtype1" "subtype1" "subtype1" "subtype4" "subtype4" "subtype1"
 [31] "subtype2" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype3" "subtype4" "subtype3" "subtype1" "subtype4"
 [43] "subtype3" "subtype3" "subtype2" "subtype3" "subtype4" "subtype2"
 [49] "subtype3" "subtype4" "subtype1" "subtype2" "subtype3" "subtype4"
 [55] "subtype4" "subtype1" "subtype3" "subtype2" "subtype1" "subtype4"
 [61] "subtype4" "subtype4" "subtype4" "subtype1" "subtype1" "subtype3"
 [67] "subtype1" "subtype1" "subtype3" "subtype4" "subtype3" "subtype1"
 [73] "subtype3" "subtype4" "subtype4" "subtype3" "subtype1" "subtype4"
 [79] "subtype3" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
 [85] "subtype4" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [91] "subtype4" "subtype3" "subtype3" "subtype3" "subtype2" "subtype4"
 [97] "subtype4" "subtype1" "subtype2" "subtype1" "subtype2" "subtype4"
[103] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[109] "subtype3" "subtype3" "subtype4" "subtype3" "subtype3" "subtype1"
[115] "subtype4" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
[121] "subtype2" "subtype4" "subtype1" "subtype4" "subtype3" "subtype3"
[127] "subtype1" "subtype4" "subtype4" "subtype4" "subtype3" "subtype3"
[133] "subtype4" "subtype2" "subtype3" "subtype4" "subtype1" "subtype4"
[139] "subtype1" "subtype1" "subtype3" "subtype4" "subtype1" "subtype2"
[145] "subtype3" "subtype1" "subtype4" "subtype4" "subtype4" "subtype3"
[151] "subtype4" "subtype2" "subtype3" "subtype1" "subtype3" "subtype4"
[157] "subtype3" "subtype4" "subtype3" "subtype4" "subtype2" "subtype4"
[163] "subtype2" "subtype2" "subtype1" "subtype1" "subtype4" "subtype4"
[169] "subtype3" "subtype4" "subtype1" "subtype4" "subtype4" "subtype3"
[175] "subtype4" "subtype2" "subtype3" "subtype4" "subtype4" "subtype1"
[181] "subtype3" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
[187] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
[193] "subtype1" "subtype4" "subtype1" "subtype2" "subtype3" "subtype4"
[199] "subtype4" "subtype4" "subtype3" "subtype1" "subtype4" "subtype4"
[205] "subtype1" "subtype1" "subtype4" "subtype2" "subtype4" "subtype4"
[211] "subtype3" "subtype3" "subtype4" "subtype4" "subtype4" "subtype4"
[217] "subtype1" "subtype4" "subtype1" "subtype4" "subtype4" "subtype3"
[223] "subtype3" "subtype4" "subtype2" "subtype3" "subtype3" "subtype1"
[229] "subtype4" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
[235] "subtype4" "subtype1" "subtype4" "subtype4" "subtype2" "subtype3"
[241] "subtype4" "subtype1" "subtype4" "subtype1" "subtype3" "subtype3"
[247] "subtype1" "subtype4" "subtype3" "subtype1" "subtype3" "subtype4"
[253] "subtype4" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[259] "subtype1" "subtype1" "subtype4" "subtype1" "subtype1" "subtype1"
[265] "subtype1" "subtype4" "subtype2" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[277] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[283] "subtype1" "subtype4" "subtype4" "subtype2" "subtype1" "subtype4"
[289] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[295] "subtype1" "subtype3" "subtype1" "subtype3" "subtype4" "subtype1"
[301] "subtype4" "subtype1" "subtype4" "subtype1" "subtype2" "subtype1"
[307] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[313] "subtype1" "subtype1" "subtype4" "subtype3" "subtype1" "subtype4"
[319] "subtype4" "subtype1" "subtype1" "subtype4" "subtype4" "subtype2"
[325] "subtype4" "subtype1" "subtype1" "subtype3" "subtype1" "subtype4"
[331] "subtype1" "subtype4" "subtype3" "subtype4" "subtype4" "subtype4"
[337] "subtype3" "subtype1" "subtype4" "subtype4" "subtype4" "subtype3"
[343] "subtype4" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[349] "subtype3" "subtype1" "subtype3" "subtype1" "subtype4" "subtype4"
[355] "subtype2" "subtype1" "subtype4" "subtype4" "subtype2" "subtype3"
[361] "subtype3" "subtype3" "subtype4" "subtype4" "subtype4" "subtype3"
[367] "subtype4" "subtype4" "subtype3" "subtype1" "subtype1" "subtype1"
[373] "subtype2" "subtype1" "subtype4" "subtype1" "subtype4" "subtype2"
[379] "subtype2" "subtype3" "subtype4" "subtype1" "subtype4" "subtype4"
[385] "subtype4" "subtype4" "subtype4" "subtype3" "subtype4" "subtype4"
[391] "subtype4" "subtype1" "subtype4" "subtype3" "subtype2" "subtype3"
[397] "subtype3" "subtype3" "subtype3" "subtype1" "subtype4" "subtype3"
[403] "subtype3" "subtype3" "subtype1" "subtype4" "subtype4" "subtype1"
[409] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype4"
[415] "subtype1" "subtype4" "subtype1" "subtype1" "subtype4" "subtype3"
[421] "subtype4" "subtype1" "subtype1" "subtype4" "subtype4" "subtype2"
[427] "subtype2" "subtype1" "subtype1" "subtype3" "subtype4" "subtype4"
[433] "subtype4" "subtype4" "subtype4" "subtype4" "subtype4" "subtype1"
[439] "subtype4" "subtype4" "subtype4" "subtype1" "subtype4" "subtype2"
[445] "subtype1" "subtype4" "subtype4" "subtype4" "subtype3" "subtype3"
[451] "subtype4" "subtype1" "subtype3" "subtype1" "subtype4" "subtype1"
[457] "subtype3" "subtype4" "subtype3" "subtype3" "subtype4" "subtype3"
[463] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype4"
[469] "subtype4" "subtype3" "subtype3"
D5V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV STAGE IVA STAGE IVC
  subtype1      88       29        26        1         3         2
  subtype2      33        1        12        0         4         0
  subtype3      66       14        24        0        10         2
  subtype4      81        7        43        1        25         2
D5V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 56 54 38  2
  subtype2 20 13 14  2
  subtype3 33 48 32  4
  subtype4 27 44 74 13
D5V4, multiclass
D5V5, binary
          cls
clus         0   1
  subtype1 100  26
  subtype2  17  33
  subtype3  49  59
  subtype4  50  96
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  100   26
  subtype2   17   33
  subtype3   49   59
  subtype4   50   96
   clus
vv  subtype1 subtype2 subtype3 subtype4
  0      100       17       49       50
  1       26       33       59       96
          vv
clus       M0 M1 MX
  subtype1 67  3 79
  subtype2 34  0 16
  subtype3 72  3 42
  subtype4 88  3 68
D5V6, multiclass
D5V7, binary
          cls
clus         0   1
  subtype1 108  42
  subtype2  37  13
  subtype3  88  29
  subtype4 116  43
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  108   42
  subtype2   37   13
  subtype3   88   29
  subtype4  116   43
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE      108       37       88      116
  MALE         42       13       29       43
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              2                                            66
  subtype2              1                                            43
  subtype3              2                                            99
  subtype4              4                                           126
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                     81
  subtype2                                                                      2
  subtype3                                                                     13
  subtype4                                                                      3
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                   1
  subtype2                                                                   4
  subtype3                                                                   3
  subtype4                                                                  26
D5V8, multiclass
D5V9, binary
          cls
clus         0   1
  subtype1   1 149
  subtype2   0  50
  subtype3   2 115
  subtype4  10 149
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    1  149
  subtype2    0   50
  subtype3    2  115
  subtype4   10  149
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO         1        0        2       10
  YES      149       50      115      149
D5V10, binary
          cls
clus         0   1
  subtype1 125   6
  subtype2  42   2
  subtype3  99   4
  subtype4 136   5
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  125    6
  subtype2   42    2
  subtype3   99    4
  subtype4  136    5
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO       125       42       99      136
  YES        6        2        4        5
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE VERY ADVANCED (T4B)
  subtype1           19                       1  123                   0
  subtype2           12                       2   35                   0
  subtype3           29                       1   84                   0
  subtype4           64                      12   78                   1
D5V11, multiclass
          vv
clus        R0  R1  R2  RX
  subtype1 120   9   0   7
  subtype2  36   5   0   5
  subtype3  91   9   2   8
  subtype4 121  23   2   9
D5V12, multiclass
D5V13, continuous
D5V14, binary
          cls
clus        0  1
  subtype1 70 77
  subtype2 23 25
  subtype3 60 54
  subtype4 62 95
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   70   77
  subtype2   23   25
  subtype3   60   54
  subtype4   62   95
            clus
vv           subtype1 subtype2 subtype3 subtype4
  MULTIFOCAL       70       23       60       62
  UNIFOCAL         77       25       54       95
D5V15, continuous

Clustering(6) Variable = MRNASEQ_CHIERARCHICAL
D6V1, survival
          sevent
clus2        0   1
  subtype1 129   3
  subtype2 268   9
  subtype3  60   2
subtype1 subtype2 subtype3 
     132      277       62 
subtype1 subtype2 subtype3 
       3        9        2 
$subtype1
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0ZA TCGA-BJ-A0ZC TCGA-BJ-A0ZE 
       24.79        13.78        18.21        18.87        11.57        16.73 
TCGA-BJ-A0ZG TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A191 TCGA-BJ-A192 TCGA-BJ-A28S 
        7.56        23.34        20.58         4.80         8.09        21.01 
TCGA-BJ-A28V TCGA-BJ-A291 TCGA-BJ-A2N7 TCGA-BJ-A2N8 TCGA-BJ-A3F0 TCGA-BJ-A3PT 
        5.10        14.50         6.02        16.57        14.04        12.07 
TCGA-BJ-A45C TCGA-BJ-A45D TCGA-BJ-A45F TCGA-BJ-A45G TCGA-BJ-A45K TCGA-CE-A484 
        5.72         6.48         3.45         6.35         8.98         0.39 
TCGA-DE-A2OL TCGA-DE-A4M9 TCGA-DJ-A13M TCGA-DJ-A13R TCGA-DJ-A13S TCGA-DJ-A13W 
        5.98         4.87         9.01         3.02         8.71        14.93 
TCGA-DJ-A1QG TCGA-DJ-A1QL TCGA-DJ-A2PP TCGA-DJ-A2Q0 TCGA-DJ-A2Q2 TCGA-DJ-A2QB 
        6.97         6.97         5.00         8.12         6.77        10.85 
TCGA-DJ-A3UP TCGA-DJ-A3UT TCGA-DJ-A3VG TCGA-DJ-A3VL TCGA-DJ-A3VM TCGA-DJ-A4UR 
       16.37        15.42         8.32        17.19        27.62        10.98 
TCGA-DO-A1JZ TCGA-E3-A3DZ TCGA-E8-A416 TCGA-EL-A3CX TCGA-EL-A3CZ TCGA-EL-A3D5 
       54.90        12.07        14.07        80.91        58.78        33.44 
TCGA-EL-A3GO TCGA-EL-A3GW TCGA-EL-A3H1 TCGA-EL-A3H2 TCGA-EL-A3T2 TCGA-EL-A3ZH 
       39.32        37.25        49.32        33.47        32.48        78.97 
TCGA-EL-A3ZR TCGA-EL-A4JV TCGA-EL-A4K2 TCGA-EL-A4K6 TCGA-EL-A4KI TCGA-EM-A1CW 
       48.16        45.80        19.53        28.73         8.68        18.05 
TCGA-EM-A1YA TCGA-EM-A1YB TCGA-EM-A1YC TCGA-EM-A1YD TCGA-EM-A1YE TCGA-EM-A22J 
       19.79        19.46        54.21        57.01        54.08        14.47 
TCGA-EM-A22K TCGA-EM-A22L TCGA-EM-A22N TCGA-EM-A22Q TCGA-EM-A2CJ TCGA-EM-A2CK 
       15.72        10.45        10.65        14.20        16.44        17.85 
TCGA-EM-A2CL TCGA-EM-A2CN TCGA-EM-A2CO TCGA-EM-A2CP TCGA-EM-A2CQ TCGA-EM-A2CR 
       13.18        23.51         6.02         2.96        12.30        13.64 
TCGA-EM-A2CT TCGA-EM-A2OV TCGA-EM-A2OW TCGA-EM-A2OY TCGA-EM-A2P2 TCGA-EM-A3AI 
       10.49        22.16        13.84        17.59        17.29        17.46 
TCGA-EM-A3AJ TCGA-EM-A3AL TCGA-EM-A3AP TCGA-EM-A3FL TCGA-EM-A3FN TCGA-EM-A3FP 
       18.94        14.14         8.35        16.77        12.07        17.39 
TCGA-EM-A3FR TCGA-EM-A3O6 TCGA-EM-A3O8 TCGA-EM-A3O9 TCGA-EM-A3OA TCGA-EM-A3OB 
       15.02        11.15        12.53         9.24        13.91         7.82 
TCGA-EM-A3ST TCGA-EM-A3SY TCGA-EM-A4FH TCGA-EM-A4FK TCGA-EM-A4FR TCGA-EM-A4FU 
       11.51        13.51        16.90         8.98         5.03        37.87 
TCGA-EM-A4G1 TCGA-ET-A25I TCGA-ET-A25P TCGA-ET-A2N3 TCGA-ET-A2N5 TCGA-ET-A39I 
        0.95        48.20        18.35        19.76        58.22        13.74 
TCGA-ET-A39L TCGA-ET-A39N TCGA-ET-A3DS TCGA-ET-A3DV TCGA-ET-A40P TCGA-ET-A4KQ 
       65.33        98.56         0.30       132.36         3.22         1.94 
TCGA-FE-A239 TCGA-FK-A3SD TCGA-FY-A2QD TCGA-FY-A3I5 TCGA-FY-A3NM TCGA-FY-A3NP 
       33.63         0.89         1.25         1.64         0.99        16.14 
TCGA-FY-A3R9 TCGA-FY-A3W9 TCGA-FY-A3WA TCGA-FY-A40M TCGA-H2-A2K9 TCGA-H2-A3RH 
       16.57         0.76         0.95         4.54        11.31        12.46 
TCGA-IM-A41Z TCGA-J8-A3O0 TCGA-J8-A4HY TCGA-KS-A41I TCGA-KS-A41L TCGA-KS-A4ID 
        9.63        43.17         0.20        15.95        86.70        20.48 

$subtype2
TCGA-BJ-A0Z5 TCGA-BJ-A0Z9 TCGA-BJ-A0ZB TCGA-BJ-A0ZH TCGA-BJ-A28R TCGA-BJ-A28X 
       14.73         8.25         4.01        15.12         4.87        17.49 
TCGA-BJ-A290 TCGA-BJ-A2NA TCGA-BJ-A3EZ TCGA-BJ-A3PR TCGA-BJ-A3PU TCGA-BJ-A45I 
       20.58         2.10         1.38         8.02        10.03         6.15 
TCGA-BJ-A45J TCGA-BJ-A4O8 TCGA-BJ-A4O9 TCGA-CE-A13K TCGA-CE-A3MD TCGA-CE-A3ME 
        5.06         4.93         5.95         0.53         0.20         0.23 
TCGA-CE-A481 TCGA-CE-A482 TCGA-CE-A483 TCGA-DE-A0Y2 TCGA-DE-A0Y3 TCGA-DE-A3KN 
        0.10         0.07         0.10        15.42        36.46        15.85 
TCGA-DE-A4MA TCGA-DE-A4MB TCGA-DE-A4MC TCGA-DE-A4MD TCGA-DJ-A13P TCGA-DJ-A13T 
       30.12        11.57        17.39        12.00       138.05        24.92 
TCGA-DJ-A13U TCGA-DJ-A13V TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QF TCGA-DJ-A1QH 
       12.92        11.90        10.98        99.98        18.05         7.99 
TCGA-DJ-A1QI TCGA-DJ-A1QN TCGA-DJ-A1QO TCGA-DJ-A1QQ TCGA-DJ-A2PN TCGA-DJ-A2PO 
       15.02         8.98         1.02         5.95        10.06         7.96 
TCGA-DJ-A2PQ TCGA-DJ-A2PR TCGA-DJ-A2PT TCGA-DJ-A2PU TCGA-DJ-A2PW TCGA-DJ-A2PY 
       20.48        10.45         9.60        10.26         7.69         8.78 
TCGA-DJ-A2PZ TCGA-DJ-A2Q1 TCGA-DJ-A2Q4 TCGA-DJ-A2Q6 TCGA-DJ-A2Q7 TCGA-DJ-A2Q9 
        8.42         9.34         9.44         8.61         9.57        10.36 
TCGA-DJ-A2QC TCGA-DJ-A3UK TCGA-DJ-A3UM TCGA-DJ-A3UN TCGA-DJ-A3UO TCGA-DJ-A3UQ 
        9.99        15.09        31.04        12.49        31.43        19.56 
TCGA-DJ-A3UR TCGA-DJ-A3V0 TCGA-DJ-A3V5 TCGA-DJ-A3V7 TCGA-DJ-A3V8 TCGA-DJ-A3V9 
       36.33        25.02        19.20         9.83        21.27        20.48 
TCGA-DJ-A3VA TCGA-DJ-A3VB TCGA-DJ-A3VD TCGA-DJ-A3VE TCGA-DJ-A3VF TCGA-DJ-A3VJ 
       11.93        22.92        21.01        18.94         7.73        17.36 
TCGA-DJ-A4UL TCGA-DJ-A4V2 TCGA-DJ-A4V5 TCGA-DO-A1K0 TCGA-DO-A2HM TCGA-E3-A3DY 
       11.93         3.09        16.14        21.53         2.30        31.07 
TCGA-E3-A3E0 TCGA-E3-A3E1 TCGA-E3-A3E3 TCGA-E3-A3E5 TCGA-E8-A242 TCGA-E8-A2EA 
       66.35        40.18        30.28        14.04         1.12        22.29 
TCGA-E8-A3X7 TCGA-E8-A417 TCGA-E8-A418 TCGA-E8-A432 TCGA-E8-A433 TCGA-E8-A438 
        1.48        14.27         1.48        14.43        14.70        20.68 
TCGA-E8-A44K TCGA-EL-A3CL TCGA-EL-A3CM TCGA-EL-A3CN TCGA-EL-A3CP TCGA-EL-A3CR 
       13.78        31.63        26.73       155.54       158.83         7.66 
TCGA-EL-A3CS TCGA-EL-A3CT TCGA-EL-A3CU TCGA-EL-A3CV TCGA-EL-A3CY TCGA-EL-A3D0 
       45.53        60.95       157.15        37.94         4.18         1.45 
TCGA-EL-A3D1 TCGA-EL-A3D6 TCGA-EL-A3GP TCGA-EL-A3GR TCGA-EL-A3GS TCGA-EL-A3GU 
       74.27       108.36         1.41       102.84        65.39       124.04 
TCGA-EL-A3GV TCGA-EL-A3GX TCGA-EL-A3GY TCGA-EL-A3H4 TCGA-EL-A3H5 TCGA-EL-A3H7 
       50.37       147.75       101.13        38.66        52.73       126.97 
TCGA-EL-A3H8 TCGA-EL-A3MW TCGA-EL-A3MX TCGA-EL-A3MY TCGA-EL-A3MZ TCGA-EL-A3N2 
      131.15       108.66        57.60        17.49        52.47        12.16 
TCGA-EL-A3N3 TCGA-EL-A3T1 TCGA-EL-A3T3 TCGA-EL-A3T6 TCGA-EL-A3T7 TCGA-EL-A3T8 
      147.42       129.57       116.91        98.20        41.29        95.38 
TCGA-EL-A3T9 TCGA-EL-A3TB TCGA-EL-A3ZG TCGA-EL-A3ZK TCGA-EL-A3ZL TCGA-EL-A3ZP 
        5.72        82.82        77.33        31.46        50.30        52.50 
TCGA-EL-A3ZQ TCGA-EL-A3ZT TCGA-EL-A4JW TCGA-EL-A4JX TCGA-EL-A4JZ TCGA-EL-A4K0 
       45.53        44.61        19.27        45.96        37.94        19.00 
TCGA-EL-A4K1 TCGA-EL-A4K4 TCGA-EL-A4K7 TCGA-EL-A4K9 TCGA-EL-A4KD TCGA-EL-A4KG 
       19.59        33.60        41.13        37.78        29.95        13.32 
TCGA-EL-A4KH TCGA-EM-A1CS TCGA-EM-A1CT TCGA-EM-A1CU TCGA-EM-A1CV TCGA-EM-A22I 
       11.87        26.86        18.18        20.91        12.36        14.70 
TCGA-EM-A22O TCGA-EM-A22P TCGA-EM-A2CS TCGA-EM-A2CU TCGA-EM-A2OX TCGA-EM-A2OZ 
       11.74        11.15        15.16        13.12        19.73        12.07 
TCGA-EM-A2P0 TCGA-EM-A2P1 TCGA-EM-A2P3 TCGA-EM-A3AK TCGA-EM-A3AN TCGA-EM-A3AO 
       17.59        17.46        14.60        15.68        19.63        13.38 
TCGA-EM-A3AQ TCGA-EM-A3FJ TCGA-EM-A3FK TCGA-EM-A3FM TCGA-EM-A3FO TCGA-EM-A3FQ 
       16.44        27.95        23.77        21.01        17.49        16.18 
TCGA-EM-A3O3 TCGA-EM-A3O7 TCGA-EM-A3SU TCGA-EM-A3SX TCGA-EM-A3SZ TCGA-EM-A4FF 
       14.50         7.33        16.41        15.62        12.79        70.62 
TCGA-EM-A4FM TCGA-EM-A4FN TCGA-EM-A4FQ TCGA-ET-A25G TCGA-ET-A25J TCGA-ET-A25K 
        4.80         8.58         9.80        47.47        29.69        32.35 
TCGA-ET-A25L TCGA-ET-A25M TCGA-ET-A25N TCGA-ET-A25O TCGA-ET-A25R TCGA-ET-A2MX 
       14.79        12.33        14.79        27.09        20.42        54.02 
TCGA-ET-A2MY TCGA-ET-A2MZ TCGA-ET-A2N0 TCGA-ET-A2N4 TCGA-ET-A39J TCGA-ET-A39K 
       22.09        12.26        16.08         2.66        71.01        72.49 
TCGA-ET-A39M TCGA-ET-A39O TCGA-ET-A39P TCGA-ET-A39T TCGA-ET-A3BN TCGA-ET-A3BO 
       84.89        61.02        58.72        59.15        28.24         5.82 
TCGA-ET-A3BP TCGA-ET-A3BQ TCGA-ET-A3BT TCGA-ET-A3BU TCGA-ET-A3BV TCGA-ET-A3BW 
        4.18         2.43        24.72        38.30        42.21         2.37 
TCGA-ET-A3BX TCGA-ET-A3DO TCGA-ET-A3DP TCGA-ET-A3DR TCGA-ET-A3DW TCGA-ET-A40Q 
        4.50        80.81        56.88        43.50        24.69         7.17 
TCGA-ET-A40S TCGA-ET-A4KN TCGA-FE-A22Z TCGA-FE-A230 TCGA-FE-A231 TCGA-FE-A233 
        5.00         4.01        59.15        59.70        31.59        24.69 
TCGA-FE-A234 TCGA-FE-A235 TCGA-FE-A236 TCGA-FE-A237 TCGA-FE-A238 TCGA-FE-A23A 
       68.22       102.90        66.77        81.34        39.95        81.83 
TCGA-FE-A3PA TCGA-FE-A3PB TCGA-FE-A3PC TCGA-FE-A3PD TCGA-FK-A3S3 TCGA-FK-A3SB 
       94.42        85.12        85.64        78.77        46.06         4.08 
TCGA-FK-A3SE TCGA-FK-A3SG TCGA-FK-A3SH TCGA-FK-A4UB TCGA-FY-A3BL TCGA-FY-A3I4 
       21.99         0.92        48.10        91.13         1.15         1.12 
TCGA-FY-A3ON TCGA-FY-A3R8 TCGA-FY-A3RA TCGA-FY-A3YR TCGA-FY-A40K TCGA-FY-A40L 
        1.51         4.64        18.08         6.84         4.14         6.54 
TCGA-FY-A4B3 TCGA-FY-A4B4 TCGA-GE-A2C6 TCGA-H2-A26U TCGA-H2-A3RI TCGA-H2-A421 
        1.35         1.15        12.53        10.98         2.96         2.20 
TCGA-H2-A422 TCGA-IM-A3EB TCGA-IM-A3ED TCGA-IM-A3U2 TCGA-IM-A3U3 TCGA-IM-A41Y 
        2.89        48.92        47.41        10.26        16.87         9.80 
TCGA-IM-A420 TCGA-IM-A4EB TCGA-J8-A3NZ TCGA-J8-A3O1 TCGA-J8-A3YE TCGA-J8-A3YF 
        2.96         8.65         2.24        27.19        27.81        24.69 
TCGA-J8-A3YG TCGA-J8-A3YH TCGA-J8-A4HW TCGA-KS-A41F TCGA-KS-A41J TCGA-KS-A4I1 
       22.29         5.72         2.60       120.99        15.68         5.98 
TCGA-KS-A4I3 TCGA-KS-A4I5 TCGA-KS-A4I7 TCGA-KS-A4I9 TCGA-KS-A4IB TCGA-KS-A4IC 
       12.03         6.71        12.36        17.42        64.54        14.70 
TCGA-L6-A4EP TCGA-L6-A4EQ TCGA-L6-A4ET TCGA-L6-A4EU TCGA-MK-A4N6 TCGA-MK-A4N7 
        0.59        11.87         1.12         0.72        16.60        14.47 
TCGA-MK-A4N9 
        8.71 

$subtype3
TCGA-BJ-A0Z3 TCGA-BJ-A0ZJ TCGA-BJ-A28T TCGA-BJ-A28Z TCGA-BJ-A45H TCGA-CE-A27D 
       16.34        17.69         2.76         1.22         7.79         0.10 
TCGA-CE-A485 TCGA-DE-A0XZ TCGA-DE-A4M8 TCGA-DJ-A13O TCGA-DJ-A13X TCGA-DJ-A1QM 
        0.10        20.22         6.08         7.07         7.99         0.99 
TCGA-DJ-A2PS TCGA-DJ-A2PV TCGA-DJ-A2PX TCGA-DJ-A2Q3 TCGA-DJ-A2Q5 TCGA-DJ-A2QA 
        1.94         7.96         5.03         9.21         9.90        12.43 
TCGA-DJ-A3US TCGA-DJ-A3UU TCGA-DJ-A3UW TCGA-DJ-A3UX TCGA-DJ-A3UY TCGA-DJ-A3UZ 
       32.81        17.69        43.00        11.34        21.37        12.76 
TCGA-DJ-A3V2 TCGA-DJ-A3V3 TCGA-DJ-A3V4 TCGA-DJ-A4UQ TCGA-DJ-A4UT TCGA-DJ-A4UW 
       20.22        30.58        14.56        10.78        12.20         9.44 
TCGA-DJ-A4V0 TCGA-DJ-A4V4 TCGA-E3-A3E2 TCGA-E8-A413 TCGA-E8-A414 TCGA-E8-A415 
        9.34         3.35        63.16        13.61        14.27        13.81 
TCGA-E8-A434 TCGA-E8-A436 TCGA-E8-A437 TCGA-E8-A44M TCGA-EL-A3CO TCGA-EL-A3CW 
       14.10        14.96         7.69        13.58        97.74        57.01 
TCGA-EL-A3GQ TCGA-EL-A3T0 TCGA-EL-A3TA TCGA-EL-A3ZS TCGA-EM-A3AR TCGA-EM-A4FO 
       30.18       130.72        66.90         7.04        16.77         8.35 
TCGA-EM-A4FV TCGA-ET-A39R TCGA-ET-A39S TCGA-ET-A3BS TCGA-ET-A3DQ TCGA-ET-A3DT 
       12.72        57.11        55.10         5.52        59.87        17.98 
TCGA-ET-A40R TCGA-ET-A40T TCGA-FY-A3R6 TCGA-FY-A3R7 TCGA-FY-A40N TCGA-J8-A3O2 
        4.80         2.10         0.76         0.03         0.89         1.35 
TCGA-J8-A3YD TCGA-J8-A42S 
       31.82         2.47 

subtype1 subtype2 subtype3 
    0.20     0.07     0.03 
subtype1 subtype2 subtype3 
  132.36   158.83   130.72 
subtype1 subtype2 subtype3 
  14.055   16.440   12.315 
[1] "0.2 - 132.4 (14.1)" "0.1 - 158.8 (16.4)" "0.0 - 130.7 (12.3)"
  [1] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [13] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [25] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [31] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [43] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
 [55] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [67] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [73] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [79] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [91] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [97] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[103] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[115] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[139] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[145] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[151] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[169] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[175] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[193] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[205] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[217] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[223] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[229] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[235] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[241] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[247] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[253] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[259] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[265] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[277] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[283] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[289] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[295] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[301] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[307] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[313] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[319] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[325] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[331] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[337] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[343] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[349] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[355] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[361] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[367] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[373] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[379] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[385] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[391] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[397] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[403] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[409] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[415] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[421] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[427] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[433] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[439] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[445] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[451] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[457] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[463] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[469] "subtype2" "subtype2" "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [13] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [25] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [31] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [43] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
 [55] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [67] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [73] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [79] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [91] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [97] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[103] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[115] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[139] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[145] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[151] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[169] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[175] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[193] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[205] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[217] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[223] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[229] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[235] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[241] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[247] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[253] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[259] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[265] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[277] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[283] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[289] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[295] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[301] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[307] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[313] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[319] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[325] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[331] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[337] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[343] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[349] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[355] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[361] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[367] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[373] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[379] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[385] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[391] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[397] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[403] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[409] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[415] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[421] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[427] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[433] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[439] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[445] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[451] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[457] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[463] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[469] "subtype2" "subtype2" "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [13] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
 [25] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
 [31] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [37] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [43] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
 [55] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [61] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
 [67] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [73] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
 [79] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [91] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [97] "subtype2" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
[103] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[115] "subtype2" "subtype2" "subtype3" "subtype1" "subtype3" "subtype3"
[121] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[133] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[139] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[145] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[151] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[163] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[169] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
[175] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[181] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[187] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[193] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[199] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[205] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[211] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[217] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[223] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[229] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[235] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[241] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[247] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[253] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype1"
[259] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[265] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[271] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[277] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[283] "subtype1" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[289] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[295] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[301] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[307] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[313] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[319] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
[325] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[331] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[337] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[343] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[349] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[355] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[361] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[367] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[373] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[379] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[385] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[391] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[397] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[403] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[409] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[415] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[421] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
[427] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[433] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[439] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[445] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
[451] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[457] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[463] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[469] "subtype2" "subtype2" "subtype2"
D6V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV STAGE IVA STAGE IVC
  subtype1      77       29        20        1         3         2
  subtype2     152       20        67        1        35         4
  subtype3      39        2        18        0         4         0
D6V3, multiclass
          vv
clus        T1  T2  T3  T4
  subtype1  45  54  32   2
  subtype2  62  89 109  19
  subtype3  29  16  17   0
D6V4, multiclass
D6V5, binary
          cls
clus         0   1
  subtype1  91  17
  subtype2  94 166
  subtype3  31  31
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   91   17
  subtype2   94  166
  subtype3   31   31
   clus
vv  subtype1 subtype2 subtype3
  0       91       94       31
  1       17      166       31
          vv
clus        M0  M1  MX
  subtype1  55   3  74
  subtype2 159   6 115
  subtype3  47   0  16
D6V6, multiclass
D6V7, binary
          cls
clus         0   1
  subtype1  96  37
  subtype2 204  76
  subtype3  49  14
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   96   37
  subtype2  204   76
  subtype3   49   14
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       96      204       49
  MALE         37       76       14
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              2                                            52
  subtype2              6                                           233
  subtype3              1                                            49
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                     79
  subtype2                                                                     11
  subtype3                                                                      9
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                   0
  subtype2                                                                  30
  subtype3                                                                   4
D6V8, multiclass
D6V9, binary
          cls
clus         0   1
  subtype1   2 131
  subtype2  11 269
  subtype3   0  63
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2  131
  subtype2   11  269
  subtype3    0   63
     clus
vv    subtype1 subtype2 subtype3
  NO         2       11        0
  YES      131      269       63
D6V10, binary
          cls
clus         0   1
  subtype1 111   5
  subtype2 241  10
  subtype3  50   2
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  111    5
  subtype2  241   10
  subtype3   50    2
     clus
vv    subtype1 subtype2 subtype3
  NO       111      241       50
  YES        5       10        2
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE VERY ADVANCED (T4B)
  subtype1           13                       1  112                   0
  subtype2           96                      15  161                   1
  subtype3           15                       0   47                   0
D6V11, multiclass
          vv
clus        R0  R1  R2  RX
  subtype1 104   9   0   7
  subtype2 213  33   4  18
  subtype3  51   4   0   4
D6V12, multiclass
D6V13, continuous
D6V14, binary
          cls
clus         0   1
  subtype1  62  68
  subtype2 120 155
  subtype3  33  28
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   62   68
  subtype2  120  155
  subtype3   33   28
            clus
vv           subtype1 subtype2 subtype3
  MULTIFOCAL       62      120       33
  UNIFOCAL         68      155       28
D6V15, continuous

Clustering(7) Variable = MIRSEQ_CNMF
D7V1, survival
          sevent
clus2        0   1
  subtype1 144   3
  subtype2 166   2
  subtype3 154   9
subtype1 subtype2 subtype3 
     147      168      163 
subtype1 subtype2 subtype3 
       3        2        9 
$subtype1
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0ZA TCGA-BJ-A0ZC TCGA-BJ-A0ZE 
       24.79        13.78        18.21        18.87        11.57        16.73 
TCGA-BJ-A0ZG TCGA-BJ-A0ZJ TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A191 TCGA-BJ-A192 
        7.56        17.69        23.34        20.58         4.80         8.09 
TCGA-BJ-A28S TCGA-BJ-A28V TCGA-BJ-A28W TCGA-BJ-A2N7 TCGA-BJ-A2N8 TCGA-BJ-A3F0 
       21.01         5.10         1.12         6.02        16.57        14.04 
TCGA-BJ-A45C TCGA-BJ-A45D TCGA-BJ-A45F TCGA-BJ-A45G TCGA-BJ-A45K TCGA-CE-A3ME 
        5.72         6.48         3.45         6.35         8.98         0.23 
TCGA-CE-A484 TCGA-DE-A2OL TCGA-DE-A4M9 TCGA-DE-A4MD TCGA-DJ-A13M TCGA-DJ-A13R 
        0.39         5.98         4.87        12.00         9.01         3.02 
TCGA-DJ-A13S TCGA-DJ-A13W TCGA-DJ-A13X TCGA-DJ-A1QG TCGA-DJ-A1QL TCGA-DJ-A2PP 
        8.71        14.93         7.99         6.97         6.97         5.00 
TCGA-DJ-A2Q0 TCGA-DJ-A2Q2 TCGA-DJ-A2QB TCGA-DJ-A3UP TCGA-DJ-A3US TCGA-DJ-A3UT 
        8.12         6.77        10.85        16.37        32.81        15.42 
TCGA-DJ-A3VG TCGA-DJ-A3VL TCGA-DJ-A3VM TCGA-DJ-A4UR TCGA-DJ-A4V0 TCGA-DO-A1JZ 
        8.32        17.19        27.62        10.98         9.34        54.90 
TCGA-E3-A3DZ TCGA-E3-A3E0 TCGA-E3-A3E5 TCGA-EL-A3CX TCGA-EL-A3CZ TCGA-EL-A3D5 
       12.07        66.35        14.04        80.91        58.78        33.44 
TCGA-EL-A3GO TCGA-EL-A3GS TCGA-EL-A3GW TCGA-EL-A3H1 TCGA-EL-A3H2 TCGA-EL-A3T2 
       39.32        65.39        37.25        49.32        33.47        32.48 
TCGA-EL-A3ZH TCGA-EL-A3ZR TCGA-EL-A4JV TCGA-EL-A4K2 TCGA-EL-A4K6 TCGA-EL-A4KI 
       78.97        48.16        45.80        19.53        28.73         8.68 
TCGA-EM-A1CW TCGA-EM-A1YA TCGA-EM-A1YB TCGA-EM-A1YC TCGA-EM-A1YE TCGA-EM-A22J 
       18.05        19.79        19.46        54.21        54.08        14.47 
TCGA-EM-A22K TCGA-EM-A22L TCGA-EM-A22N TCGA-EM-A22Q TCGA-EM-A2CJ TCGA-EM-A2CK 
       15.72        10.45        10.65        14.20        16.44        17.85 
TCGA-EM-A2CL TCGA-EM-A2CN TCGA-EM-A2CO TCGA-EM-A2CP TCGA-EM-A2CQ TCGA-EM-A2CR 
       13.18        23.51         6.02         2.96        12.30        13.64 
TCGA-EM-A2CT TCGA-EM-A2OV TCGA-EM-A2OW TCGA-EM-A2OY TCGA-EM-A2P2 TCGA-EM-A3AI 
       10.49        22.16        13.84        17.59        17.29        17.46 
TCGA-EM-A3AJ TCGA-EM-A3AL TCGA-EM-A3AP TCGA-EM-A3FL TCGA-EM-A3FN TCGA-EM-A3FP 
       18.94        14.14         8.35        16.77        12.07        17.39 
TCGA-EM-A3FR TCGA-EM-A3O6 TCGA-EM-A3O8 TCGA-EM-A3O9 TCGA-EM-A3OA TCGA-EM-A3OB 
       15.02        11.15        12.53         9.24        13.91         7.82 
TCGA-EM-A3ST TCGA-EM-A3SY TCGA-EM-A4FH TCGA-EM-A4FK TCGA-EM-A4FR TCGA-EM-A4FU 
       11.51        13.51        16.90         8.98         5.03        37.87 
TCGA-EM-A4G1 TCGA-ET-A25I TCGA-ET-A25P TCGA-ET-A2MX TCGA-ET-A2N3 TCGA-ET-A2N5 
        0.95        48.20        18.35        54.02        19.76        58.22 
TCGA-ET-A39I TCGA-ET-A39L TCGA-ET-A39N TCGA-ET-A3BQ TCGA-ET-A3BW TCGA-ET-A3DP 
       13.74        65.33        98.56         2.43         2.37        56.88 
TCGA-ET-A3DS TCGA-ET-A3DV TCGA-ET-A40P TCGA-ET-A40R TCGA-ET-A4KQ TCGA-FE-A230 
        0.30       132.36         3.22         4.80         1.94        59.70 
TCGA-FE-A236 TCGA-FE-A239 TCGA-FE-A3PD TCGA-FK-A3S3 TCGA-FK-A3SD TCGA-FY-A2QD 
       66.77        33.63        78.77        46.06         0.89         1.25 
TCGA-FY-A3I5 TCGA-FY-A3NM TCGA-FY-A3NP TCGA-FY-A3R9 TCGA-FY-A3W9 TCGA-FY-A3WA 
        1.64         0.99        16.14        16.57         0.76         0.95 
TCGA-H2-A2K9 TCGA-H2-A3RH TCGA-IM-A41Z TCGA-J8-A3O0 TCGA-J8-A3O1 TCGA-KS-A41I 
       11.31        12.46         9.63        43.17        27.19        15.95 
TCGA-KS-A41L TCGA-KS-A4IB TCGA-KS-A4ID 
       86.70        64.54        20.48 

$subtype2
TCGA-BJ-A0Z3 TCGA-BJ-A0Z5 TCGA-BJ-A0ZH TCGA-BJ-A28R TCGA-BJ-A28Z TCGA-BJ-A290 
       16.34        14.73        15.12         4.87         1.22        20.58 
TCGA-BJ-A2NA TCGA-BJ-A3EZ TCGA-BJ-A3PU TCGA-BJ-A45I TCGA-BJ-A45J TCGA-BJ-A4O9 
        2.10         1.38        10.03         6.15         5.06         5.95 
TCGA-CE-A13K TCGA-CE-A482 TCGA-CE-A483 TCGA-DE-A0XZ TCGA-DE-A0Y2 TCGA-DE-A0Y3 
        0.53         0.07         0.10        20.22        15.42        36.46 
TCGA-DE-A3KN TCGA-DE-A4MA TCGA-DE-A4MC TCGA-DJ-A13P TCGA-DJ-A13T TCGA-DJ-A13U 
       15.85        30.12        17.39       138.05        24.92        12.92 
TCGA-DJ-A1QI TCGA-DJ-A1QN TCGA-DJ-A2PO TCGA-DJ-A2PQ TCGA-DJ-A2PR TCGA-DJ-A2PU 
       15.02         8.98         7.96        20.48        10.45        10.26 
TCGA-DJ-A2PW TCGA-DJ-A2PX TCGA-DJ-A2Q4 TCGA-DJ-A2Q5 TCGA-DJ-A2Q7 TCGA-DJ-A2QC 
        7.69         5.03         9.44         9.90         9.57         9.99 
TCGA-DJ-A3UK TCGA-DJ-A3UN TCGA-DJ-A3UO TCGA-DJ-A3UR TCGA-DJ-A3V2 TCGA-DJ-A3V3 
       15.09        12.49        31.43        36.33        20.22        30.58 
TCGA-DJ-A3V7 TCGA-DJ-A3VA TCGA-DJ-A3VB TCGA-DJ-A3VE TCGA-DJ-A4UL TCGA-DJ-A4V2 
        9.83        11.93        22.92        18.94        11.93         3.09 
TCGA-DJ-A4V5 TCGA-DO-A1K0 TCGA-E3-A3DY TCGA-E3-A3E2 TCGA-E3-A3E3 TCGA-E8-A417 
       16.14        21.53        31.07        63.16        30.28        14.27 
TCGA-E8-A418 TCGA-E8-A438 TCGA-EL-A3CL TCGA-EL-A3CT TCGA-EL-A3D6 TCGA-EL-A3GV 
        1.48        20.68        31.63        60.95       108.36        50.37 
TCGA-EL-A3GX TCGA-EL-A3GY TCGA-EL-A3H4 TCGA-EL-A3H8 TCGA-EL-A3MW TCGA-EL-A3N2 
      147.75       101.13        38.66       131.15       108.66        12.16 
TCGA-EL-A3N3 TCGA-EL-A3T1 TCGA-EL-A3T3 TCGA-EL-A3T6 TCGA-EL-A3T7 TCGA-EL-A3T8 
      147.42       129.57       116.91        98.20        41.29        95.38 
TCGA-EL-A3TB TCGA-EL-A3ZG TCGA-EL-A3ZQ TCGA-EL-A3ZT TCGA-EL-A4JX TCGA-EL-A4K7 
       82.82        77.33        45.53        44.61        45.96        41.13 
TCGA-EL-A4K9 TCGA-EL-A4KD TCGA-EL-A4KG TCGA-EL-A4KH TCGA-EM-A1CS TCGA-EM-A1CT 
       37.78        29.95        13.32        11.87        26.86        18.18 
TCGA-EM-A1CV TCGA-EM-A22I TCGA-EM-A22M TCGA-EM-A22O TCGA-EM-A2CS TCGA-EM-A2OZ 
       12.36        14.70        14.50        11.74        15.16        12.07 
TCGA-EM-A3AK TCGA-EM-A3AN TCGA-EM-A3AO TCGA-EM-A3AQ TCGA-EM-A3FJ TCGA-EM-A3FK 
       15.68        19.63        13.38        16.44        27.95        23.77 
TCGA-EM-A3FM TCGA-EM-A3FO TCGA-EM-A3O7 TCGA-EM-A3SU TCGA-EM-A3SX TCGA-EM-A3SZ 
       21.01        17.49         7.33        16.41        15.62        12.79 
TCGA-EM-A4FF TCGA-EM-A4FN TCGA-EM-A4FQ TCGA-EM-A4FV TCGA-ET-A25G TCGA-ET-A25J 
       70.62         8.58         9.80        12.72        47.47        29.69 
TCGA-ET-A25K TCGA-ET-A25N TCGA-ET-A25O TCGA-ET-A25R TCGA-ET-A2MY TCGA-ET-A2MZ 
       32.35        14.79        27.09        20.42        22.09        12.26 
TCGA-ET-A2N1 TCGA-ET-A2N4 TCGA-ET-A39K TCGA-ET-A39M TCGA-ET-A39O TCGA-ET-A39R 
       29.19         2.66        72.49        84.89        61.02        57.11 
TCGA-ET-A39T TCGA-ET-A3BO TCGA-ET-A3BP TCGA-ET-A3BS TCGA-ET-A3BX TCGA-ET-A3DO 
       59.15         5.82         4.18         5.52         4.50        80.81 
TCGA-ET-A3DW TCGA-ET-A40S TCGA-FE-A231 TCGA-FE-A232 TCGA-FE-A233 TCGA-FE-A234 
       24.69         5.00        31.59        44.25        24.69        68.22 
TCGA-FE-A235 TCGA-FE-A23A TCGA-FE-A3PA TCGA-FE-A3PC TCGA-FK-A3SB TCGA-FK-A3SG 
      102.90        81.83        94.42        85.64         4.08         0.92 
TCGA-FK-A4UB TCGA-FY-A3BL TCGA-FY-A3ON TCGA-FY-A3R8 TCGA-FY-A3RA TCGA-FY-A40N 
       91.13         1.15         1.51         4.64        18.08         0.89 
TCGA-FY-A4B4 TCGA-H2-A3RI TCGA-H2-A421 TCGA-H2-A422 TCGA-IM-A3EB TCGA-IM-A3ED 
        1.15         2.96         2.20         2.89        48.92        47.41 
TCGA-IM-A3U3 TCGA-IM-A41Y TCGA-IM-A420 TCGA-J8-A3NZ TCGA-J8-A3YE TCGA-J8-A3YH 
       16.87         9.80         2.96         2.24        27.81         5.72 
TCGA-J8-A4HY TCGA-KS-A41F TCGA-KS-A41J TCGA-KS-A4I1 TCGA-KS-A4I5 TCGA-KS-A4I7 
        0.20       120.99        15.68         5.98         6.71        12.36 
TCGA-KS-A4I9 TCGA-L6-A4EP TCGA-L6-A4EQ TCGA-L6-A4ET TCGA-MK-A4N7 TCGA-MK-A4N9 
       17.42         0.59        11.87         1.12        14.47         8.71 

$subtype3
TCGA-BJ-A0Z9 TCGA-BJ-A0ZB TCGA-BJ-A28T TCGA-BJ-A28X TCGA-BJ-A291 TCGA-BJ-A3PR 
        8.25         4.01         2.76        17.49        14.50         8.02 
TCGA-BJ-A3PT TCGA-BJ-A45E TCGA-BJ-A45H TCGA-BJ-A4O8 TCGA-CE-A27D TCGA-CE-A3MD 
       12.07         0.03         7.79         4.93         0.10         0.20 
TCGA-CE-A481 TCGA-CE-A485 TCGA-DE-A4M8 TCGA-DE-A4MB TCGA-DJ-A13O TCGA-DJ-A1QD 
        0.10         0.10         6.08        11.57         7.07        10.98 
TCGA-DJ-A1QE TCGA-DJ-A1QF TCGA-DJ-A1QH TCGA-DJ-A1QM TCGA-DJ-A1QO TCGA-DJ-A1QQ 
       99.98        18.05         7.99         0.99         1.02         5.95 
TCGA-DJ-A2PN TCGA-DJ-A2PS TCGA-DJ-A2PT TCGA-DJ-A2PV TCGA-DJ-A2PY TCGA-DJ-A2PZ 
       10.06         1.94         9.60         7.96         8.78         8.42 
TCGA-DJ-A2Q1 TCGA-DJ-A2Q3 TCGA-DJ-A2Q6 TCGA-DJ-A2Q8 TCGA-DJ-A2Q9 TCGA-DJ-A2QA 
        9.34         9.21         8.61         7.07        10.36        12.43 
TCGA-DJ-A3UM TCGA-DJ-A3UQ TCGA-DJ-A3UU TCGA-DJ-A3UW TCGA-DJ-A3UX TCGA-DJ-A3UY 
       31.04        19.56        17.69        43.00        11.34        21.37 
TCGA-DJ-A3UZ TCGA-DJ-A3V0 TCGA-DJ-A3V4 TCGA-DJ-A3V5 TCGA-DJ-A3V8 TCGA-DJ-A3V9 
       12.76        25.02        14.56        19.20        21.27        20.48 
TCGA-DJ-A3VD TCGA-DJ-A3VF TCGA-DJ-A3VJ TCGA-DJ-A4UQ TCGA-DJ-A4UT TCGA-DJ-A4UW 
       21.01         7.73        17.36        10.78        12.20         9.44 
TCGA-DJ-A4V4 TCGA-DO-A2HM TCGA-E3-A3E1 TCGA-E8-A242 TCGA-E8-A2EA TCGA-E8-A3X7 
        3.35         2.30        40.18         1.12        22.29         1.48 
TCGA-E8-A413 TCGA-E8-A414 TCGA-E8-A415 TCGA-E8-A416 TCGA-E8-A432 TCGA-E8-A433 
       13.61        14.27        13.81        14.07        14.43        14.70 
TCGA-E8-A434 TCGA-E8-A436 TCGA-E8-A437 TCGA-E8-A44K TCGA-E8-A44M TCGA-EL-A3CM 
       14.10        14.96         7.69        13.78        13.58        26.73 
TCGA-EL-A3CN TCGA-EL-A3CO TCGA-EL-A3CP TCGA-EL-A3CR TCGA-EL-A3CS TCGA-EL-A3CU 
      155.54        97.74       158.83         7.66        45.53       157.15 
TCGA-EL-A3CV TCGA-EL-A3CW TCGA-EL-A3CY TCGA-EL-A3D0 TCGA-EL-A3D1 TCGA-EL-A3D4 
       37.94        57.01         4.18         1.45        74.27        45.40 
TCGA-EL-A3GP TCGA-EL-A3GQ TCGA-EL-A3GR TCGA-EL-A3GU TCGA-EL-A3H5 TCGA-EL-A3H7 
        1.41        30.18       102.84       124.04        52.73       126.97 
TCGA-EL-A3MX TCGA-EL-A3MY TCGA-EL-A3MZ TCGA-EL-A3T0 TCGA-EL-A3T9 TCGA-EL-A3TA 
       57.60        17.49        52.47       130.72         5.72        66.90 
TCGA-EL-A3ZK TCGA-EL-A3ZL TCGA-EL-A3ZP TCGA-EL-A3ZS TCGA-EL-A4JW TCGA-EL-A4JZ 
       31.46        50.30        52.50         7.04        19.27        37.94 
TCGA-EL-A4K0 TCGA-EL-A4K1 TCGA-EL-A4K4 TCGA-EM-A1CU TCGA-EM-A1YD TCGA-EM-A22P 
       19.00        19.59        33.60        20.91        57.01        11.15 
TCGA-EM-A2CU TCGA-EM-A2OX TCGA-EM-A2P0 TCGA-EM-A2P1 TCGA-EM-A2P3 TCGA-EM-A3AR 
       13.12        19.73        17.59        17.46        14.60        16.77 
TCGA-EM-A3FQ TCGA-EM-A3O3 TCGA-EM-A4FM TCGA-EM-A4FO TCGA-ET-A25L TCGA-ET-A25M 
       16.18        14.50         4.80         8.35        14.79        12.33 
TCGA-ET-A2N0 TCGA-ET-A39J TCGA-ET-A39P TCGA-ET-A39S TCGA-ET-A3BN TCGA-ET-A3BT 
       16.08        71.01        58.72        55.10        28.24        24.72 
TCGA-ET-A3BU TCGA-ET-A3BV TCGA-ET-A3DQ TCGA-ET-A3DR TCGA-ET-A3DT TCGA-ET-A3DU 
       38.30        42.21        59.87        43.50        17.98        25.32 
TCGA-ET-A40Q TCGA-ET-A40T TCGA-ET-A4KN TCGA-FE-A22Z TCGA-FE-A237 TCGA-FE-A238 
        7.17         2.10         4.01        59.15        81.34        39.95 
TCGA-FE-A3PB TCGA-FK-A3SE TCGA-FK-A3SH TCGA-FY-A3I4 TCGA-FY-A3R6 TCGA-FY-A3R7 
       85.12        21.99        48.10         1.12         0.76         0.03 
TCGA-FY-A3YR TCGA-FY-A40K TCGA-FY-A40L TCGA-FY-A40M TCGA-FY-A4B3 TCGA-GE-A2C6 
        6.84         4.14         6.54         4.54         1.35        12.53 
TCGA-H2-A26U TCGA-IM-A3U2 TCGA-IM-A4EB TCGA-J8-A3O2 TCGA-J8-A3YD TCGA-J8-A3YF 
       10.98        10.26         8.65         1.35        31.82        24.69 
TCGA-J8-A3YG TCGA-J8-A42S TCGA-J8-A4HW TCGA-KS-A4I3 TCGA-KS-A4IC TCGA-L6-A4EU 
       22.29         2.47         2.60        12.03        14.70         0.72 
TCGA-MK-A4N6 
       16.60 

subtype1 subtype2 subtype3 
    0.23     0.07     0.03 
subtype1 subtype2 subtype3 
  132.36   147.75   158.83 
subtype1 subtype2 subtype3 
  14.200   15.995   14.430 
[1] "0.2 - 132.4 (14.2)" "0.1 - 147.8 (16.0)" "0.0 - 158.8 (14.4)"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [25] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [31] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [43] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [49] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [61] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [67] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [73] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [79] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
 [85] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[103] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[139] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[145] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[151] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[157] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[175] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[187] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[193] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[199] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[205] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[211] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[217] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[229] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[235] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[241] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[247] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[253] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[259] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[265] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[271] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[283] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[289] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[295] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[301] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[307] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[313] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[325] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[331] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[337] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[343] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[349] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[355] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[361] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[367] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[373] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[379] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[385] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[391] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[397] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[403] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[409] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[415] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[421] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[427] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[433] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[439] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[445] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[451] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[457] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[463] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[469] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[475] "subtype3" "subtype3" "subtype2" "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [25] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [31] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [43] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [49] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [61] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [67] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [73] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [79] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
 [85] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[103] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[139] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[145] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[151] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[157] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[175] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[187] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[193] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[199] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[205] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[211] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[217] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[229] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[235] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[241] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[247] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[253] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[259] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[265] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[271] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[283] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[289] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[295] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[301] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[307] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[313] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[325] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[331] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[337] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[343] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[349] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[355] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[361] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[367] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[373] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[379] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[385] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[391] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[397] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[403] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[409] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[415] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[421] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[427] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[433] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[439] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[445] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[451] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[457] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[463] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[469] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[475] "subtype3" "subtype3" "subtype2" "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype3"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [25] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
 [31] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype1" "subtype3" "subtype2" "subtype2"
 [43] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [49] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
 [61] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [67] "subtype3" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
 [73] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [79] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
 [85] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[103] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[139] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[145] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[151] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[157] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[175] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[187] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[193] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[199] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[205] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[211] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[217] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[229] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[235] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[241] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[247] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[253] "subtype1" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[259] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[265] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[271] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[283] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[289] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[295] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[301] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[307] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[313] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype1"
[325] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[331] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[337] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[343] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[349] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype2"
[355] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[361] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[367] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[373] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[379] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[385] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[391] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[397] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
[403] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[409] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[415] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[421] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[427] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[433] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[439] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[445] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[451] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[457] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[463] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[469] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[475] "subtype3" "subtype3" "subtype2" "subtype2"
D7V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV STAGE IVA STAGE IVC
  subtype1      91       29        20        1         4         2
  subtype2      99       17        35        0        17         2
  subtype3      83        5        51        1        22         2
D7V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 43 66 37  2
  subtype2 44 61 58  7
  subtype3 53 34 64 12
D7V4, multiclass
D7V5, binary
          cls
clus        0  1
  subtype1 94 27
  subtype2 67 90
  subtype3 59 99
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   94   27
  subtype2   67   90
  subtype3   59   99
   clus
vv  subtype1 subtype2 subtype3
  0       94       67       59
  1       27       90       99
          vv
clus        M0  M1  MX
  subtype1  62   3  82
  subtype2  92   4  74
  subtype3 110   2  53
D7V6, multiclass
D7V7, binary
          cls
clus         0   1
  subtype1 106  42
  subtype2 125  45
  subtype3 123  42
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  106   42
  subtype2  125   45
  subtype3  123   42
        clus
vv       subtype1 subtype2 subtype3
  FEMALE      106      125      123
  MALE         42       45       42
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              2                                            64
  subtype2              3                                           146
  subtype3              4                                           130
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                     82
  subtype2                                                                      9
  subtype3                                                                      8
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                   0
  subtype2                                                                  12
  subtype3                                                                  23
D7V8, multiclass
D7V9, binary
          cls
clus         0   1
  subtype1   4 144
  subtype2   7 163
  subtype3   3 162
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    4  144
  subtype2    7  163
  subtype3    3  162
     clus
vv    subtype1 subtype2 subtype3
  NO         4        7        3
  YES      144      163      162
D7V10, binary
          cls
clus         0   1
  subtype1 125   5
  subtype2 142   6
  subtype3 140   6
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  125    5
  subtype2  142    6
  subtype3  140    6
     clus
vv    subtype1 subtype2 subtype3
  NO       125      142      140
  YES        5        6        6
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE VERY ADVANCED (T4B)
  subtype1           15                       0  127                   0
  subtype2           53                       5  107                   0
  subtype3           57                      11   90                   1
D7V11, multiclass
          vv
clus        R0  R1  R2  RX
  subtype1 118   9   0   9
  subtype2 135  15   2   8
  subtype3 119  23   2  12
D7V12, multiclass
D7V13, continuous
D7V14, binary
          cls
clus        0  1
  subtype1 64 79
  subtype2 76 90
  subtype3 78 86
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   64   79
  subtype2   76   90
  subtype3   78   86
            clus
vv           subtype1 subtype2 subtype3
  MULTIFOCAL       64       76       78
  UNIFOCAL         79       90       86
D7V15, continuous

Clustering(8) Variable = MIRSEQ_CHIERARCHICAL
D8V1, survival
          sevent
clus2        0   1
  subtype1 150   1
  subtype2 125   3
  subtype3 189  10
subtype1 subtype2 subtype3 
     151      128      199 
subtype1 subtype2 subtype3 
       1        3       10 
$subtype1
TCGA-BJ-A0Z3 TCGA-BJ-A0Z5 TCGA-BJ-A0Z9 TCGA-BJ-A0ZJ TCGA-BJ-A28R TCGA-BJ-A290 
       16.34        14.73         8.25        17.69         4.87        20.58 
TCGA-BJ-A3EZ TCGA-BJ-A45J TCGA-BJ-A4O9 TCGA-CE-A13K TCGA-CE-A3ME TCGA-CE-A482 
        1.38         5.06         5.95         0.53         0.23         0.07 
TCGA-CE-A483 TCGA-DE-A0XZ TCGA-DE-A0Y2 TCGA-DE-A0Y3 TCGA-DE-A3KN TCGA-DE-A4MD 
        0.10        20.22        15.42        36.46        15.85        12.00 
TCGA-DJ-A13P TCGA-DJ-A13T TCGA-DJ-A13U TCGA-DJ-A13X TCGA-DJ-A1QF TCGA-DJ-A1QI 
      138.05        24.92        12.92         7.99        18.05        15.02 
TCGA-DJ-A1QN TCGA-DJ-A2PO TCGA-DJ-A2PQ TCGA-DJ-A2PR TCGA-DJ-A2PU TCGA-DJ-A2PW 
        8.98         7.96        20.48        10.45        10.26         7.69 
TCGA-DJ-A2PX TCGA-DJ-A2Q4 TCGA-DJ-A2Q5 TCGA-DJ-A2Q7 TCGA-DJ-A2QC TCGA-DJ-A3UK 
        5.03         9.44         9.90         9.57         9.99        15.09 
TCGA-DJ-A3UN TCGA-DJ-A3UO TCGA-DJ-A3UR TCGA-DJ-A3V2 TCGA-DJ-A3V3 TCGA-DJ-A3V7 
       12.49        31.43        36.33        20.22        30.58         9.83 
TCGA-DJ-A3VA TCGA-DJ-A3VE TCGA-DJ-A3VL TCGA-DJ-A4UL TCGA-DJ-A4V2 TCGA-DO-A1K0 
       11.93        18.94        17.19        11.93         3.09        21.53 
TCGA-E3-A3DY TCGA-E3-A3E2 TCGA-E3-A3E3 TCGA-E3-A3E5 TCGA-E8-A417 TCGA-E8-A418 
       31.07        63.16        30.28        14.04        14.27         1.48 
TCGA-E8-A438 TCGA-EL-A3CL TCGA-EL-A3GS TCGA-EL-A3GX TCGA-EL-A3GY TCGA-EL-A3H4 
       20.68        31.63        65.39       147.75       101.13        38.66 
TCGA-EL-A3MW TCGA-EL-A3N2 TCGA-EL-A3T3 TCGA-EL-A3T6 TCGA-EL-A3T7 TCGA-EL-A3T8 
      108.66        12.16       116.91        98.20        41.29        95.38 
TCGA-EL-A3TB TCGA-EL-A3ZG TCGA-EL-A3ZQ TCGA-EL-A3ZT TCGA-EL-A4K7 TCGA-EL-A4K9 
       82.82        77.33        45.53        44.61        41.13        37.78 
TCGA-EL-A4KD TCGA-EL-A4KH TCGA-EM-A1CS TCGA-EM-A1CT TCGA-EM-A1CU TCGA-EM-A1CV 
       29.95        11.87        26.86        18.18        20.91        12.36 
TCGA-EM-A22O TCGA-EM-A2CS TCGA-EM-A2OZ TCGA-EM-A3AK TCGA-EM-A3AN TCGA-EM-A3AO 
       11.74        15.16        12.07        15.68        19.63        13.38 
TCGA-EM-A3AQ TCGA-EM-A3FJ TCGA-EM-A3FK TCGA-EM-A3FO TCGA-EM-A3O7 TCGA-EM-A3SX 
       16.44        27.95        23.77        17.49         7.33        15.62 
TCGA-EM-A4FV TCGA-ET-A25J TCGA-ET-A25K TCGA-ET-A25N TCGA-ET-A25O TCGA-ET-A2MX 
       12.72        29.69        32.35        14.79        27.09        54.02 
TCGA-ET-A2MZ TCGA-ET-A2N1 TCGA-ET-A2N4 TCGA-ET-A39J TCGA-ET-A39K TCGA-ET-A39L 
       12.26        29.19         2.66        71.01        72.49        65.33 
TCGA-ET-A39T TCGA-ET-A3BO TCGA-ET-A3BP TCGA-ET-A3BQ TCGA-ET-A3BS TCGA-ET-A3BX 
       59.15         5.82         4.18         2.43         5.52         4.50 
TCGA-ET-A3DP TCGA-ET-A3DW TCGA-ET-A40R TCGA-ET-A40S TCGA-FE-A230 TCGA-FE-A231 
       56.88        24.69         4.80         5.00        59.70        31.59 
TCGA-FE-A232 TCGA-FE-A233 TCGA-FE-A235 TCGA-FE-A236 TCGA-FE-A238 TCGA-FE-A23A 
       44.25        24.69       102.90        66.77        39.95        81.83 
TCGA-FE-A3PA TCGA-FE-A3PC TCGA-FE-A3PD TCGA-FK-A3S3 TCGA-FK-A3SB TCGA-FK-A3SG 
       94.42        85.64        78.77        46.06         4.08         0.92 
TCGA-FK-A3SH TCGA-FK-A4UB TCGA-FY-A3BL TCGA-FY-A3ON TCGA-FY-A3RA TCGA-FY-A40N 
       48.10        91.13         1.15         1.51        18.08         0.89 
TCGA-FY-A4B4 TCGA-H2-A3RI TCGA-H2-A422 TCGA-IM-A3ED TCGA-J8-A3YE TCGA-J8-A3YH 
        1.15         2.96         2.89        47.41        27.81         5.72 
TCGA-J8-A4HW TCGA-J8-A4HY TCGA-KS-A41F TCGA-KS-A41J TCGA-KS-A4I1 TCGA-KS-A4I5 
        2.60         0.20       120.99        15.68         5.98         6.71 
TCGA-KS-A4I7 TCGA-KS-A4IB TCGA-L6-A4EP TCGA-L6-A4EQ TCGA-L6-A4ET TCGA-MK-A4N7 
       12.36        64.54         0.59        11.87         1.12        14.47 
TCGA-MK-A4N9 
        8.71 

$subtype2
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0ZA TCGA-BJ-A0ZC TCGA-BJ-A0ZE 
       24.79        13.78        18.21        18.87        11.57        16.73 
TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A191 TCGA-BJ-A192 TCGA-BJ-A28S TCGA-BJ-A28V 
       23.34        20.58         4.80         8.09        21.01         5.10 
TCGA-BJ-A2N7 TCGA-BJ-A2N8 TCGA-BJ-A3F0 TCGA-BJ-A45C TCGA-BJ-A45D TCGA-BJ-A45F 
        6.02        16.57        14.04         5.72         6.48         3.45 
TCGA-BJ-A45G TCGA-BJ-A45K TCGA-CE-A484 TCGA-DE-A2OL TCGA-DE-A4M9 TCGA-DJ-A13M 
        6.35         8.98         0.39         5.98         4.87         9.01 
TCGA-DJ-A13R TCGA-DJ-A13S TCGA-DJ-A13W TCGA-DJ-A1QG TCGA-DJ-A1QL TCGA-DJ-A2PP 
        3.02         8.71        14.93         6.97         6.97         5.00 
TCGA-DJ-A2Q0 TCGA-DJ-A2Q2 TCGA-DJ-A2QB TCGA-DJ-A3UP TCGA-DJ-A3US TCGA-DJ-A3UT 
        8.12         6.77        10.85        16.37        32.81        15.42 
TCGA-DJ-A3VG TCGA-DJ-A3VM TCGA-DJ-A4UR TCGA-DO-A1JZ TCGA-E3-A3DZ TCGA-E3-A3E0 
        8.32        27.62        10.98        54.90        12.07        66.35 
TCGA-EL-A3CX TCGA-EL-A3CZ TCGA-EL-A3D5 TCGA-EL-A3GO TCGA-EL-A3GW TCGA-EL-A3H1 
       80.91        58.78        33.44        39.32        37.25        49.32 
TCGA-EL-A3H2 TCGA-EL-A3T2 TCGA-EL-A3ZH TCGA-EL-A3ZR TCGA-EL-A4JV TCGA-EL-A4K2 
       33.47        32.48        78.97        48.16        45.80        19.53 
TCGA-EL-A4K6 TCGA-EL-A4KI TCGA-EM-A1CW TCGA-EM-A1YA TCGA-EM-A1YB TCGA-EM-A1YC 
       28.73         8.68        18.05        19.79        19.46        54.21 
TCGA-EM-A1YE TCGA-EM-A22J TCGA-EM-A22K TCGA-EM-A22L TCGA-EM-A22N TCGA-EM-A22Q 
       54.08        14.47        15.72        10.45        10.65        14.20 
TCGA-EM-A2CJ TCGA-EM-A2CK TCGA-EM-A2CL TCGA-EM-A2CN TCGA-EM-A2CO TCGA-EM-A2CP 
       16.44        17.85        13.18        23.51         6.02         2.96 
TCGA-EM-A2CQ TCGA-EM-A2CR TCGA-EM-A2CT TCGA-EM-A2OV TCGA-EM-A2OW TCGA-EM-A2OY 
       12.30        13.64        10.49        22.16        13.84        17.59 
TCGA-EM-A2P2 TCGA-EM-A3AI TCGA-EM-A3AJ TCGA-EM-A3AL TCGA-EM-A3AP TCGA-EM-A3FL 
       17.29        17.46        18.94        14.14         8.35        16.77 
TCGA-EM-A3FN TCGA-EM-A3FP TCGA-EM-A3FR TCGA-EM-A3O6 TCGA-EM-A3O8 TCGA-EM-A3O9 
       12.07        17.39        15.02        11.15        12.53         9.24 
TCGA-EM-A3OA TCGA-EM-A3OB TCGA-EM-A3ST TCGA-EM-A3SY TCGA-EM-A4FH TCGA-EM-A4FK 
       13.91         7.82        11.51        13.51        16.90         8.98 
TCGA-EM-A4FR TCGA-EM-A4FU TCGA-EM-A4G1 TCGA-ET-A25I TCGA-ET-A25P TCGA-ET-A2N3 
        5.03        37.87         0.95        48.20        18.35        19.76 
TCGA-ET-A2N5 TCGA-ET-A39I TCGA-ET-A39N TCGA-ET-A3BW TCGA-ET-A3DS TCGA-ET-A3DV 
       58.22        13.74        98.56         2.37         0.30       132.36 
TCGA-ET-A40P TCGA-ET-A4KQ TCGA-FE-A239 TCGA-FK-A3SD TCGA-FY-A2QD TCGA-FY-A3I5 
        3.22         1.94        33.63         0.89         1.25         1.64 
TCGA-FY-A3NM TCGA-FY-A3NP TCGA-FY-A3R9 TCGA-FY-A3W9 TCGA-FY-A3WA TCGA-FY-A40M 
        0.99        16.14        16.57         0.76         0.95         4.54 
TCGA-H2-A2K9 TCGA-H2-A3RH TCGA-IM-A41Z TCGA-J8-A3O0 TCGA-J8-A3O1 TCGA-KS-A41I 
       11.31        12.46         9.63        43.17        27.19        15.95 
TCGA-KS-A41L TCGA-KS-A4ID 
       86.70        20.48 

$subtype3
TCGA-BJ-A0ZB TCGA-BJ-A0ZG TCGA-BJ-A0ZH TCGA-BJ-A28T TCGA-BJ-A28W TCGA-BJ-A28X 
        4.01         7.56        15.12         2.76         1.12        17.49 
TCGA-BJ-A28Z TCGA-BJ-A291 TCGA-BJ-A2NA TCGA-BJ-A3PR TCGA-BJ-A3PT TCGA-BJ-A3PU 
        1.22        14.50         2.10         8.02        12.07        10.03 
TCGA-BJ-A45E TCGA-BJ-A45H TCGA-BJ-A45I TCGA-BJ-A4O8 TCGA-CE-A27D TCGA-CE-A3MD 
        0.03         7.79         6.15         4.93         0.10         0.20 
TCGA-CE-A481 TCGA-CE-A485 TCGA-DE-A4M8 TCGA-DE-A4MA TCGA-DE-A4MB TCGA-DE-A4MC 
        0.10         0.10         6.08        30.12        11.57        17.39 
TCGA-DJ-A13O TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QH TCGA-DJ-A1QM TCGA-DJ-A1QO 
        7.07        10.98        99.98         7.99         0.99         1.02 
TCGA-DJ-A1QQ TCGA-DJ-A2PN TCGA-DJ-A2PS TCGA-DJ-A2PT TCGA-DJ-A2PV TCGA-DJ-A2PY 
        5.95        10.06         1.94         9.60         7.96         8.78 
TCGA-DJ-A2PZ TCGA-DJ-A2Q1 TCGA-DJ-A2Q3 TCGA-DJ-A2Q6 TCGA-DJ-A2Q8 TCGA-DJ-A2Q9 
        8.42         9.34         9.21         8.61         7.07        10.36 
TCGA-DJ-A2QA TCGA-DJ-A3UM TCGA-DJ-A3UQ TCGA-DJ-A3UU TCGA-DJ-A3UW TCGA-DJ-A3UX 
       12.43        31.04        19.56        17.69        43.00        11.34 
TCGA-DJ-A3UY TCGA-DJ-A3UZ TCGA-DJ-A3V0 TCGA-DJ-A3V4 TCGA-DJ-A3V5 TCGA-DJ-A3V8 
       21.37        12.76        25.02        14.56        19.20        21.27 
TCGA-DJ-A3V9 TCGA-DJ-A3VB TCGA-DJ-A3VD TCGA-DJ-A3VF TCGA-DJ-A3VJ TCGA-DJ-A4UQ 
       20.48        22.92        21.01         7.73        17.36        10.78 
TCGA-DJ-A4UT TCGA-DJ-A4UW TCGA-DJ-A4V0 TCGA-DJ-A4V4 TCGA-DJ-A4V5 TCGA-DO-A2HM 
       12.20         9.44         9.34         3.35        16.14         2.30 
TCGA-E3-A3E1 TCGA-E8-A242 TCGA-E8-A2EA TCGA-E8-A3X7 TCGA-E8-A413 TCGA-E8-A414 
       40.18         1.12        22.29         1.48        13.61        14.27 
TCGA-E8-A415 TCGA-E8-A416 TCGA-E8-A432 TCGA-E8-A433 TCGA-E8-A434 TCGA-E8-A436 
       13.81        14.07        14.43        14.70        14.10        14.96 
TCGA-E8-A437 TCGA-E8-A44K TCGA-E8-A44M TCGA-EL-A3CM TCGA-EL-A3CN TCGA-EL-A3CO 
        7.69        13.78        13.58        26.73       155.54        97.74 
TCGA-EL-A3CP TCGA-EL-A3CR TCGA-EL-A3CS TCGA-EL-A3CT TCGA-EL-A3CU TCGA-EL-A3CV 
      158.83         7.66        45.53        60.95       157.15        37.94 
TCGA-EL-A3CW TCGA-EL-A3CY TCGA-EL-A3D0 TCGA-EL-A3D1 TCGA-EL-A3D4 TCGA-EL-A3D6 
       57.01         4.18         1.45        74.27        45.40       108.36 
TCGA-EL-A3GP TCGA-EL-A3GQ TCGA-EL-A3GR TCGA-EL-A3GU TCGA-EL-A3GV TCGA-EL-A3H5 
        1.41        30.18       102.84       124.04        50.37        52.73 
TCGA-EL-A3H7 TCGA-EL-A3H8 TCGA-EL-A3MX TCGA-EL-A3MY TCGA-EL-A3MZ TCGA-EL-A3N3 
      126.97       131.15        57.60        17.49        52.47       147.42 
TCGA-EL-A3T0 TCGA-EL-A3T1 TCGA-EL-A3T9 TCGA-EL-A3TA TCGA-EL-A3ZK TCGA-EL-A3ZL 
      130.72       129.57         5.72        66.90        31.46        50.30 
TCGA-EL-A3ZP TCGA-EL-A3ZS TCGA-EL-A4JW TCGA-EL-A4JX TCGA-EL-A4JZ TCGA-EL-A4K0 
       52.50         7.04        19.27        45.96        37.94        19.00 
TCGA-EL-A4K1 TCGA-EL-A4K4 TCGA-EL-A4KG TCGA-EM-A1YD TCGA-EM-A22I TCGA-EM-A22M 
       19.59        33.60        13.32        57.01        14.70        14.50 
TCGA-EM-A22P TCGA-EM-A2CU TCGA-EM-A2OX TCGA-EM-A2P0 TCGA-EM-A2P1 TCGA-EM-A2P3 
       11.15        13.12        19.73        17.59        17.46        14.60 
TCGA-EM-A3AR TCGA-EM-A3FM TCGA-EM-A3FQ TCGA-EM-A3O3 TCGA-EM-A3SU TCGA-EM-A3SZ 
       16.77        21.01        16.18        14.50        16.41        12.79 
TCGA-EM-A4FF TCGA-EM-A4FM TCGA-EM-A4FN TCGA-EM-A4FO TCGA-EM-A4FQ TCGA-ET-A25G 
       70.62         4.80         8.58         8.35         9.80        47.47 
TCGA-ET-A25L TCGA-ET-A25M TCGA-ET-A25R TCGA-ET-A2MY TCGA-ET-A2N0 TCGA-ET-A39M 
       14.79        12.33        20.42        22.09        16.08        84.89 
TCGA-ET-A39O TCGA-ET-A39P TCGA-ET-A39R TCGA-ET-A39S TCGA-ET-A3BN TCGA-ET-A3BT 
       61.02        58.72        57.11        55.10        28.24        24.72 
TCGA-ET-A3BU TCGA-ET-A3BV TCGA-ET-A3DO TCGA-ET-A3DQ TCGA-ET-A3DR TCGA-ET-A3DT 
       38.30        42.21        80.81        59.87        43.50        17.98 
TCGA-ET-A3DU TCGA-ET-A40Q TCGA-ET-A40T TCGA-ET-A4KN TCGA-FE-A22Z TCGA-FE-A234 
       25.32         7.17         2.10         4.01        59.15        68.22 
TCGA-FE-A237 TCGA-FE-A3PB TCGA-FK-A3SE TCGA-FY-A3I4 TCGA-FY-A3R6 TCGA-FY-A3R7 
       81.34        85.12        21.99         1.12         0.76         0.03 
TCGA-FY-A3R8 TCGA-FY-A3YR TCGA-FY-A40K TCGA-FY-A40L TCGA-FY-A4B3 TCGA-GE-A2C6 
        4.64         6.84         4.14         6.54         1.35        12.53 
TCGA-H2-A26U TCGA-H2-A421 TCGA-IM-A3EB TCGA-IM-A3U2 TCGA-IM-A3U3 TCGA-IM-A41Y 
       10.98         2.20        48.92        10.26        16.87         9.80 
TCGA-IM-A420 TCGA-IM-A4EB TCGA-J8-A3NZ TCGA-J8-A3O2 TCGA-J8-A3YD TCGA-J8-A3YF 
        2.96         8.65         2.24         1.35        31.82        24.69 
TCGA-J8-A3YG TCGA-J8-A42S TCGA-KS-A4I3 TCGA-KS-A4I9 TCGA-KS-A4IC TCGA-L6-A4EU 
       22.29         2.47        12.03        17.42        14.70         0.72 
TCGA-MK-A4N6 
       16.60 

subtype1 subtype2 subtype3 
    0.07     0.30     0.03 
subtype1 subtype2 subtype3 
  147.75   132.36   158.83 
subtype1 subtype2 subtype3 
   15.85    14.09    14.60 
[1] "0.1 - 147.8 (15.8)" "0.3 - 132.4 (14.1)" "0.0 - 158.8 (14.6)"
  [1] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [31] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [37] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [43] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [49] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [55] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
 [61] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [67] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [73] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [79] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [85] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [91] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [97] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[103] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[109] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[115] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[133] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[139] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[145] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[151] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[157] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[175] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[187] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[193] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[199] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[205] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[211] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[217] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[223] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[229] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[235] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[241] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[247] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[253] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[259] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[271] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[277] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[283] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[289] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[295] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[301] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[307] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[313] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[319] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[325] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[331] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[337] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[343] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[349] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[355] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[361] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[367] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[373] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[379] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[385] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[391] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[397] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[403] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[409] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[415] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[421] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[427] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[433] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[439] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[445] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[451] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[457] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[463] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[469] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[475] "subtype3" "subtype3" "subtype1" "subtype1"
  [1] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [31] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [37] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [43] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [49] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [55] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
 [61] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [67] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [73] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [79] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [85] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [91] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [97] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[103] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[109] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[115] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[133] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[139] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[145] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[151] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[157] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[175] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[187] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[193] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[199] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[205] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[211] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[217] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[223] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[229] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[235] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[241] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[247] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[253] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[259] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[271] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[277] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[283] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[289] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[295] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[301] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[307] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[313] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[319] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[325] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[331] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[337] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[343] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[349] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[355] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[361] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[367] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[373] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[379] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[385] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[391] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[397] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[403] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[409] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[415] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[421] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[427] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[433] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[439] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[445] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[451] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[457] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[463] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[469] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[475] "subtype3" "subtype3" "subtype1" "subtype1"
  [1] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [13] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [25] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype1"
 [31] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [37] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [43] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [49] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [55] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
 [61] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [67] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [73] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
 [79] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [85] "subtype3" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [91] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
 [97] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[103] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[109] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[115] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype2"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[127] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[133] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[139] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[145] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[151] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
[157] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[175] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[187] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[193] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[199] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[205] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[211] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[217] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[223] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
[229] "subtype1" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[235] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
[241] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[247] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[253] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[259] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[265] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[271] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[277] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[283] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[289] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[295] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
[301] "subtype3" "subtype1" "subtype1" "subtype2" "subtype3" "subtype2"
[307] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
[313] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[319] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[325] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[331] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[337] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[343] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[349] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[355] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
[361] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[367] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[373] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[379] "subtype3" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
[385] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
[391] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[397] "subtype3" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
[403] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[409] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[415] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[421] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[427] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
[433] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[439] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[445] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[451] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[457] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[463] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[469] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[475] "subtype3" "subtype3" "subtype1" "subtype1"
D8V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV STAGE IVA STAGE IVC
  subtype1      92       17        26        0        15         2
  subtype2      76       28        19        1         2         2
  subtype3     105        6        61        1        26         2
D8V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 36 62 47  7
  subtype2 42 55 31  1
  subtype3 62 44 81 13
D8V4, multiclass
D8V5, binary
          cls
clus         0   1
  subtype1  62  81
  subtype2  86  17
  subtype3  72 118
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   62   81
  subtype2   86   17
  subtype3   72  118
   clus
vv  subtype1 subtype2 subtype3
  0       62       86       72
  1       81       17      118
          vv
clus        M0  M1  MX
  subtype1  83   4  65
  subtype2  52   3  73
  subtype3 129   2  71
D8V6, multiclass
D8V7, binary
          cls
clus         0   1
  subtype1 108  44
  subtype2  94  35
  subtype3 152  50
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  108   44
  subtype2   94   35
  subtype3  152   50
        clus
vv       subtype1 subtype2 subtype3
  FEMALE      108       94      152
  MALE         44       35       50
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              2                                           131
  subtype2              2                                            51
  subtype3              5                                           158
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                     13
  subtype2                                                                     76
  subtype3                                                                     10
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                   6
  subtype2                                                                   0
  subtype3                                                                  29
D8V8, multiclass
D8V9, binary
          cls
clus         0   1
  subtype1   9 143
  subtype2   2 127
  subtype3   3 199
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    9  143
  subtype2    2  127
  subtype3    3  199
     clus
vv    subtype1 subtype2 subtype3
  NO         9        2        3
  YES      143      127      199
D8V10, binary
          cls
clus         0   1
  subtype1 127   5
  subtype2 109   5
  subtype3 171   7
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  127    5
  subtype2  109    5
  subtype3  171    7
     clus
vv    subtype1 subtype2 subtype3
  NO       127      109      171
  YES        5        5        7
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE VERY ADVANCED (T4B)
  subtype1           37                       4  106                   0
  subtype2           13                       0  111                   0
  subtype3           75                      12  107                   1
D8V11, multiclass
          vv
clus        R0  R1  R2  RX
  subtype1 122  12   1   8
  subtype2 103   9   0   6
  subtype3 147  26   3  15
D8V12, multiclass
D8V13, continuous
D8V14, binary
          cls
clus         0   1
  subtype1  68  80
  subtype2  60  66
  subtype3  90 109
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   68   80
  subtype2   60   66
  subtype3   90  109
            clus
vv           subtype1 subtype2 subtype3
  MULTIFOCAL       68       60       90
  UNIFOCAL         80       66      109
D8V15, continuous

Clustering(9) Variable = MIRSEQ_MATURE_CNMF
D9V1, survival
          sevent
clus2        0   1
  subtype1 157   3
  subtype2 163   1
  subtype3 144  10
subtype1 subtype2 subtype3 
     160      164      154 
subtype1 subtype2 subtype3 
       3        1       10 
$subtype1
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0Z5 TCGA-BJ-A0ZA TCGA-BJ-A0ZC 
       24.79        13.78        18.21        14.73        18.87        11.57 
TCGA-BJ-A0ZE TCGA-BJ-A0ZG TCGA-BJ-A0ZJ TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A191 
       16.73         7.56        17.69        23.34        20.58         4.80 
TCGA-BJ-A192 TCGA-BJ-A28S TCGA-BJ-A28V TCGA-BJ-A28W TCGA-BJ-A2N7 TCGA-BJ-A2N8 
        8.09        21.01         5.10         1.12         6.02        16.57 
TCGA-BJ-A3F0 TCGA-BJ-A45C TCGA-BJ-A45D TCGA-BJ-A45F TCGA-BJ-A45G TCGA-BJ-A45K 
       14.04         5.72         6.48         3.45         6.35         8.98 
TCGA-CE-A484 TCGA-DE-A2OL TCGA-DE-A3KN TCGA-DE-A4M9 TCGA-DE-A4MD TCGA-DJ-A13M 
        0.39         5.98        15.85         4.87        12.00         9.01 
TCGA-DJ-A13P TCGA-DJ-A13R TCGA-DJ-A13S TCGA-DJ-A13T TCGA-DJ-A13W TCGA-DJ-A13X 
      138.05         3.02         8.71        24.92        14.93         7.99 
TCGA-DJ-A1QG TCGA-DJ-A1QL TCGA-DJ-A2PP TCGA-DJ-A2Q0 TCGA-DJ-A2Q2 TCGA-DJ-A2QA 
        6.97         6.97         5.00         8.12         6.77        12.43 
TCGA-DJ-A2QB TCGA-DJ-A3UP TCGA-DJ-A3US TCGA-DJ-A3UT TCGA-DJ-A3UZ TCGA-DJ-A3VG 
       10.85        16.37        32.81        15.42        12.76         8.32 
TCGA-DJ-A3VL TCGA-DJ-A3VM TCGA-DJ-A4UR TCGA-DO-A1JZ TCGA-E3-A3DZ TCGA-E3-A3E0 
       17.19        27.62        10.98        54.90        12.07        66.35 
TCGA-E3-A3E5 TCGA-EL-A3CX TCGA-EL-A3CZ TCGA-EL-A3D4 TCGA-EL-A3D5 TCGA-EL-A3GO 
       14.04        80.91        58.78        45.40        33.44        39.32 
TCGA-EL-A3GS TCGA-EL-A3GV TCGA-EL-A3GW TCGA-EL-A3H1 TCGA-EL-A3H2 TCGA-EL-A3T2 
       65.39        50.37        37.25        49.32        33.47        32.48 
TCGA-EL-A3ZH TCGA-EL-A3ZR TCGA-EL-A4JV TCGA-EL-A4K2 TCGA-EL-A4K6 TCGA-EL-A4KD 
       78.97        48.16        45.80        19.53        28.73        29.95 
TCGA-EL-A4KI TCGA-EM-A1CS TCGA-EM-A1CV TCGA-EM-A1CW TCGA-EM-A1YA TCGA-EM-A1YB 
        8.68        26.86        12.36        18.05        19.79        19.46 
TCGA-EM-A1YC TCGA-EM-A1YE TCGA-EM-A22J TCGA-EM-A22K TCGA-EM-A22L TCGA-EM-A22N 
       54.21        54.08        14.47        15.72        10.45        10.65 
TCGA-EM-A22O TCGA-EM-A22Q TCGA-EM-A2CJ TCGA-EM-A2CK TCGA-EM-A2CL TCGA-EM-A2CN 
       11.74        14.20        16.44        17.85        13.18        23.51 
TCGA-EM-A2CO TCGA-EM-A2CP TCGA-EM-A2CQ TCGA-EM-A2CR TCGA-EM-A2CT TCGA-EM-A2OV 
        6.02         2.96        12.30        13.64        10.49        22.16 
TCGA-EM-A2OW TCGA-EM-A2OY TCGA-EM-A2P0 TCGA-EM-A2P2 TCGA-EM-A3AI TCGA-EM-A3AJ 
       13.84        17.59        17.59        17.29        17.46        18.94 
TCGA-EM-A3AL TCGA-EM-A3AP TCGA-EM-A3FL TCGA-EM-A3FN TCGA-EM-A3FP TCGA-EM-A3FR 
       14.14         8.35        16.77        12.07        17.39        15.02 
TCGA-EM-A3O6 TCGA-EM-A3O8 TCGA-EM-A3O9 TCGA-EM-A3OA TCGA-EM-A3OB TCGA-EM-A3ST 
       11.15        12.53         9.24        13.91         7.82        11.51 
TCGA-EM-A3SX TCGA-EM-A3SY TCGA-EM-A4FH TCGA-EM-A4FK TCGA-EM-A4FR TCGA-EM-A4FU 
       15.62        13.51        16.90         8.98         5.03        37.87 
TCGA-EM-A4G1 TCGA-ET-A25I TCGA-ET-A25P TCGA-ET-A2MZ TCGA-ET-A2N1 TCGA-ET-A2N3 
        0.95        48.20        18.35        12.26        29.19        19.76 
TCGA-ET-A2N4 TCGA-ET-A2N5 TCGA-ET-A39I TCGA-ET-A39L TCGA-ET-A39N TCGA-ET-A3BP 
        2.66        58.22        13.74        65.33        98.56         4.18 
TCGA-ET-A3BQ TCGA-ET-A3BW TCGA-ET-A3DP TCGA-ET-A3DR TCGA-ET-A3DS TCGA-ET-A3DV 
        2.43         2.37        56.88        43.50         0.30       132.36 
TCGA-ET-A40P TCGA-ET-A40R TCGA-ET-A4KQ TCGA-FE-A236 TCGA-FE-A239 TCGA-FK-A3S3 
        3.22         4.80         1.94        66.77        33.63        46.06 
TCGA-FK-A3SD TCGA-FY-A2QD TCGA-FY-A3I5 TCGA-FY-A3NM TCGA-FY-A3NP TCGA-FY-A3R9 
        0.89         1.25         1.64         0.99        16.14        16.57 
TCGA-FY-A3W9 TCGA-FY-A3WA TCGA-H2-A2K9 TCGA-H2-A3RH TCGA-IM-A41Z TCGA-J8-A3O0 
        0.76         0.95        11.31        12.46         9.63        43.17 
TCGA-J8-A3O1 TCGA-KS-A41I TCGA-KS-A41L TCGA-KS-A4IB 
       27.19        15.95        86.70        64.54 

$subtype2
TCGA-BJ-A0Z3 TCGA-BJ-A0Z9 TCGA-BJ-A0ZH TCGA-BJ-A28R TCGA-BJ-A28Z TCGA-BJ-A290 
       16.34         8.25        15.12         4.87         1.22        20.58 
TCGA-BJ-A3EZ TCGA-BJ-A3PU TCGA-BJ-A45J TCGA-BJ-A4O9 TCGA-CE-A13K TCGA-CE-A3ME 
        1.38        10.03         5.06         5.95         0.53         0.23 
TCGA-CE-A482 TCGA-CE-A483 TCGA-DE-A0XZ TCGA-DE-A0Y2 TCGA-DE-A0Y3 TCGA-DE-A4MA 
        0.07         0.10        20.22        15.42        36.46        30.12 
TCGA-DE-A4MC TCGA-DJ-A13U TCGA-DJ-A1QI TCGA-DJ-A1QN TCGA-DJ-A1QO TCGA-DJ-A2PO 
       17.39        12.92        15.02         8.98         1.02         7.96 
TCGA-DJ-A2PQ TCGA-DJ-A2PR TCGA-DJ-A2PU TCGA-DJ-A2PW TCGA-DJ-A2PX TCGA-DJ-A2Q4 
       20.48        10.45        10.26         7.69         5.03         9.44 
TCGA-DJ-A2Q5 TCGA-DJ-A2Q7 TCGA-DJ-A2QC TCGA-DJ-A3UK TCGA-DJ-A3UN TCGA-DJ-A3UO 
        9.90         9.57         9.99        15.09        12.49        31.43 
TCGA-DJ-A3UR TCGA-DJ-A3V2 TCGA-DJ-A3V3 TCGA-DJ-A3V7 TCGA-DJ-A3V9 TCGA-DJ-A3VA 
       36.33        20.22        30.58         9.83        20.48        11.93 
TCGA-DJ-A3VB TCGA-DJ-A3VE TCGA-DJ-A4UL TCGA-DJ-A4V2 TCGA-DJ-A4V5 TCGA-DO-A1K0 
       22.92        18.94        11.93         3.09        16.14        21.53 
TCGA-E3-A3DY TCGA-E3-A3E2 TCGA-E3-A3E3 TCGA-E8-A417 TCGA-E8-A418 TCGA-E8-A438 
       31.07        63.16        30.28        14.27         1.48        20.68 
TCGA-EL-A3CL TCGA-EL-A3CN TCGA-EL-A3D6 TCGA-EL-A3GX TCGA-EL-A3GY TCGA-EL-A3H4 
       31.63       155.54       108.36       147.75       101.13        38.66 
TCGA-EL-A3H8 TCGA-EL-A3MW TCGA-EL-A3N2 TCGA-EL-A3T1 TCGA-EL-A3T3 TCGA-EL-A3T6 
      131.15       108.66        12.16       129.57       116.91        98.20 
TCGA-EL-A3T7 TCGA-EL-A3T8 TCGA-EL-A3TB TCGA-EL-A3ZG TCGA-EL-A3ZQ TCGA-EL-A3ZT 
       41.29        95.38        82.82        77.33        45.53        44.61 
TCGA-EL-A4JX TCGA-EL-A4K1 TCGA-EL-A4K7 TCGA-EL-A4K9 TCGA-EL-A4KG TCGA-EL-A4KH 
       45.96        19.59        41.13        37.78        13.32        11.87 
TCGA-EM-A1CT TCGA-EM-A22I TCGA-EM-A22M TCGA-EM-A2CS TCGA-EM-A2OZ TCGA-EM-A3AK 
       18.18        14.70        14.50        15.16        12.07        15.68 
TCGA-EM-A3AN TCGA-EM-A3AO TCGA-EM-A3AQ TCGA-EM-A3FJ TCGA-EM-A3FK TCGA-EM-A3FM 
       19.63        13.38        16.44        27.95        23.77        21.01 
TCGA-EM-A3FO TCGA-EM-A3O7 TCGA-EM-A3SU TCGA-EM-A3SZ TCGA-EM-A4FF TCGA-EM-A4FN 
       17.49         7.33        16.41        12.79        70.62         8.58 
TCGA-EM-A4FQ TCGA-EM-A4FV TCGA-ET-A25G TCGA-ET-A25J TCGA-ET-A25K TCGA-ET-A25N 
        9.80        12.72        47.47        29.69        32.35        14.79 
TCGA-ET-A25O TCGA-ET-A25R TCGA-ET-A2MX TCGA-ET-A2MY TCGA-ET-A39K TCGA-ET-A39M 
       27.09        20.42        54.02        22.09        72.49        84.89 
TCGA-ET-A39O TCGA-ET-A39R TCGA-ET-A39T TCGA-ET-A3BO TCGA-ET-A3BS TCGA-ET-A3BX 
       61.02        57.11        59.15         5.82         5.52         4.50 
TCGA-ET-A3DO TCGA-ET-A3DT TCGA-ET-A3DW TCGA-ET-A40S TCGA-FE-A230 TCGA-FE-A231 
       80.81        17.98        24.69         5.00        59.70        31.59 
TCGA-FE-A232 TCGA-FE-A233 TCGA-FE-A234 TCGA-FE-A235 TCGA-FE-A238 TCGA-FE-A23A 
       44.25        24.69        68.22       102.90        39.95        81.83 
TCGA-FE-A3PA TCGA-FE-A3PC TCGA-FE-A3PD TCGA-FK-A3SG TCGA-FK-A4UB TCGA-FY-A3BL 
       94.42        85.64        78.77         0.92        91.13         1.15 
TCGA-FY-A3ON TCGA-FY-A3R8 TCGA-FY-A3RA TCGA-FY-A3YR TCGA-FY-A40N TCGA-FY-A4B4 
        1.51         4.64        18.08         6.84         0.89         1.15 
TCGA-H2-A3RI TCGA-H2-A421 TCGA-H2-A422 TCGA-IM-A3EB TCGA-IM-A3ED TCGA-IM-A3U3 
        2.96         2.20         2.89        48.92        47.41        16.87 
TCGA-IM-A41Y TCGA-IM-A420 TCGA-J8-A3NZ TCGA-J8-A3YE TCGA-J8-A3YH TCGA-J8-A4HY 
        9.80         2.96         2.24        27.81         5.72         0.20 
TCGA-KS-A41F TCGA-KS-A41J TCGA-KS-A4I1 TCGA-KS-A4I3 TCGA-KS-A4I5 TCGA-KS-A4I7 
      120.99        15.68         5.98        12.03         6.71        12.36 
TCGA-KS-A4I9 TCGA-KS-A4ID TCGA-L6-A4EP TCGA-L6-A4EQ TCGA-L6-A4ET TCGA-MK-A4N6 
       17.42        20.48         0.59        11.87         1.12        16.60 
TCGA-MK-A4N7 TCGA-MK-A4N9 
       14.47         8.71 

$subtype3
TCGA-BJ-A0ZB TCGA-BJ-A28T TCGA-BJ-A28X TCGA-BJ-A291 TCGA-BJ-A2NA TCGA-BJ-A3PR 
        4.01         2.76        17.49        14.50         2.10         8.02 
TCGA-BJ-A3PT TCGA-BJ-A45E TCGA-BJ-A45H TCGA-BJ-A45I TCGA-BJ-A4O8 TCGA-CE-A27D 
       12.07         0.03         7.79         6.15         4.93         0.10 
TCGA-CE-A3MD TCGA-CE-A481 TCGA-CE-A485 TCGA-DE-A4M8 TCGA-DE-A4MB TCGA-DJ-A13O 
        0.20         0.10         0.10         6.08        11.57         7.07 
TCGA-DJ-A1QD TCGA-DJ-A1QE TCGA-DJ-A1QF TCGA-DJ-A1QH TCGA-DJ-A1QM TCGA-DJ-A1QQ 
       10.98        99.98        18.05         7.99         0.99         5.95 
TCGA-DJ-A2PN TCGA-DJ-A2PS TCGA-DJ-A2PT TCGA-DJ-A2PV TCGA-DJ-A2PY TCGA-DJ-A2PZ 
       10.06         1.94         9.60         7.96         8.78         8.42 
TCGA-DJ-A2Q1 TCGA-DJ-A2Q3 TCGA-DJ-A2Q6 TCGA-DJ-A2Q8 TCGA-DJ-A2Q9 TCGA-DJ-A3UM 
        9.34         9.21         8.61         7.07        10.36        31.04 
TCGA-DJ-A3UQ TCGA-DJ-A3UU TCGA-DJ-A3UW TCGA-DJ-A3UX TCGA-DJ-A3UY TCGA-DJ-A3V0 
       19.56        17.69        43.00        11.34        21.37        25.02 
TCGA-DJ-A3V4 TCGA-DJ-A3V5 TCGA-DJ-A3V8 TCGA-DJ-A3VD TCGA-DJ-A3VF TCGA-DJ-A3VJ 
       14.56        19.20        21.27        21.01         7.73        17.36 
TCGA-DJ-A4UQ TCGA-DJ-A4UT TCGA-DJ-A4UW TCGA-DJ-A4V0 TCGA-DJ-A4V4 TCGA-DO-A2HM 
       10.78        12.20         9.44         9.34         3.35         2.30 
TCGA-E3-A3E1 TCGA-E8-A242 TCGA-E8-A2EA TCGA-E8-A3X7 TCGA-E8-A413 TCGA-E8-A414 
       40.18         1.12        22.29         1.48        13.61        14.27 
TCGA-E8-A415 TCGA-E8-A416 TCGA-E8-A432 TCGA-E8-A433 TCGA-E8-A434 TCGA-E8-A436 
       13.81        14.07        14.43        14.70        14.10        14.96 
TCGA-E8-A437 TCGA-E8-A44K TCGA-E8-A44M TCGA-EL-A3CM TCGA-EL-A3CO TCGA-EL-A3CP 
        7.69        13.78        13.58        26.73        97.74       158.83 
TCGA-EL-A3CR TCGA-EL-A3CS TCGA-EL-A3CT TCGA-EL-A3CU TCGA-EL-A3CV TCGA-EL-A3CW 
        7.66        45.53        60.95       157.15        37.94        57.01 
TCGA-EL-A3CY TCGA-EL-A3D0 TCGA-EL-A3D1 TCGA-EL-A3GP TCGA-EL-A3GQ TCGA-EL-A3GR 
        4.18         1.45        74.27         1.41        30.18       102.84 
TCGA-EL-A3GU TCGA-EL-A3H5 TCGA-EL-A3H7 TCGA-EL-A3MX TCGA-EL-A3MY TCGA-EL-A3MZ 
      124.04        52.73       126.97        57.60        17.49        52.47 
TCGA-EL-A3N3 TCGA-EL-A3T0 TCGA-EL-A3T9 TCGA-EL-A3TA TCGA-EL-A3ZK TCGA-EL-A3ZL 
      147.42       130.72         5.72        66.90        31.46        50.30 
TCGA-EL-A3ZP TCGA-EL-A3ZS TCGA-EL-A4JW TCGA-EL-A4JZ TCGA-EL-A4K0 TCGA-EL-A4K4 
       52.50         7.04        19.27        37.94        19.00        33.60 
TCGA-EM-A1CU TCGA-EM-A1YD TCGA-EM-A22P TCGA-EM-A2CU TCGA-EM-A2OX TCGA-EM-A2P1 
       20.91        57.01        11.15        13.12        19.73        17.46 
TCGA-EM-A2P3 TCGA-EM-A3AR TCGA-EM-A3FQ TCGA-EM-A3O3 TCGA-EM-A4FM TCGA-EM-A4FO 
       14.60        16.77        16.18        14.50         4.80         8.35 
TCGA-ET-A25L TCGA-ET-A25M TCGA-ET-A2N0 TCGA-ET-A39J TCGA-ET-A39P TCGA-ET-A39S 
       14.79        12.33        16.08        71.01        58.72        55.10 
TCGA-ET-A3BN TCGA-ET-A3BT TCGA-ET-A3BU TCGA-ET-A3BV TCGA-ET-A3DQ TCGA-ET-A3DU 
       28.24        24.72        38.30        42.21        59.87        25.32 
TCGA-ET-A40Q TCGA-ET-A40T TCGA-ET-A4KN TCGA-FE-A22Z TCGA-FE-A237 TCGA-FE-A3PB 
        7.17         2.10         4.01        59.15        81.34        85.12 
TCGA-FK-A3SB TCGA-FK-A3SE TCGA-FK-A3SH TCGA-FY-A3I4 TCGA-FY-A3R6 TCGA-FY-A3R7 
        4.08        21.99        48.10         1.12         0.76         0.03 
TCGA-FY-A40K TCGA-FY-A40L TCGA-FY-A40M TCGA-FY-A4B3 TCGA-GE-A2C6 TCGA-H2-A26U 
        4.14         6.54         4.54         1.35        12.53        10.98 
TCGA-IM-A3U2 TCGA-IM-A4EB TCGA-J8-A3O2 TCGA-J8-A3YD TCGA-J8-A3YF TCGA-J8-A3YG 
       10.26         8.65         1.35        31.82        24.69        22.29 
TCGA-J8-A42S TCGA-J8-A4HW TCGA-KS-A4IC TCGA-L6-A4EU 
        2.47         2.60        14.70         0.72 

subtype1 subtype2 subtype3 
    0.30     0.07     0.03 
subtype1 subtype2 subtype3 
  138.05   155.54   158.83 
subtype1 subtype2 subtype3 
  14.600   16.520   14.085 
[1] "0.3 - 138.1 (14.6)" "0.1 - 155.5 (16.5)" "0.0 - 158.8 (14.1)"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [25] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [31] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [43] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [61] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [67] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [73] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [79] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [85] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[103] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[127] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[139] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[145] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[151] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[157] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[175] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[187] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[193] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[199] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[205] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[211] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[217] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[229] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[235] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[241] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[247] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[253] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[259] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[265] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[271] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[283] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[289] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[295] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[301] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[307] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[313] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[325] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[331] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[337] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[343] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[349] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[355] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[361] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[367] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[373] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[379] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[385] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[391] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[397] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[403] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[409] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[415] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[421] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[427] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[433] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[439] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[445] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[451] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[457] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[463] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[469] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[475] "subtype3" "subtype2" "subtype2" "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [25] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [31] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [43] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [61] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [67] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [73] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [79] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [85] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[103] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[127] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[139] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[145] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[151] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[157] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[175] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[187] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[193] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[199] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[205] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[211] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[217] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[229] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[235] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[241] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[247] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[253] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[259] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[265] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[271] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[283] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[289] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[295] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[301] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[307] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[313] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[325] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[331] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[337] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[343] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[349] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[355] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[361] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[367] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[373] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[379] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[385] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[391] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[397] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[403] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[409] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[415] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[421] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[427] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[433] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[439] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[445] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[451] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[457] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[463] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[469] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[475] "subtype3" "subtype2" "subtype2" "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [13] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [19] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [25] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [31] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [43] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [49] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [55] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [61] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [67] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [73] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [79] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [85] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[103] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype1"
[121] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[127] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[139] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[145] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[151] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
[157] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[163] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[175] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[181] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[187] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[193] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
[199] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype1"
[205] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[211] "subtype3" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[217] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[223] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[229] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[235] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[241] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[247] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[253] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[259] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[265] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[271] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[283] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype2"
[289] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[295] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[301] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[307] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[313] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[319] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype1"
[325] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[331] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[337] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
[343] "subtype2" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[349] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[355] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[361] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[367] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[373] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[379] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[385] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[391] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[397] "subtype3" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[403] "subtype2" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[409] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[415] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[421] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[427] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[433] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[439] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[445] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[451] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype2"
[457] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
[463] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[469] "subtype1" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
[475] "subtype3" "subtype2" "subtype2" "subtype2"
D9V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV STAGE IVA STAGE IVC
  subtype1      95       28        27        1         7         2
  subtype2      99       18        32        0        15         2
  subtype3      79        5        47        1        21         2
D9V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 46 66 46  3
  subtype2 42 63 56  5
  subtype3 52 32 57 13
D9V4, multiclass
D9V5, binary
          cls
clus        0  1
  subtype1 99 35
  subtype2 65 89
  subtype3 56 92
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   99   35
  subtype2   65   89
  subtype3   56   92
   clus
vv  subtype1 subtype2 subtype3
  0       99       65       56
  1       35       89       92
          vv
clus        M0  M1  MX
  subtype1  68   3  89
  subtype2  90   4  72
  subtype3 106   2  48
D9V6, multiclass
D9V7, binary
          cls
clus         0   1
  subtype1 114  47
  subtype2 122  44
  subtype3 118  38
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  114   47
  subtype2  122   44
  subtype3  118   38
        clus
vv       subtype1 subtype2 subtype3
  FEMALE      114      122      118
  MALE         47       44       38
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              2                                            77
  subtype2              3                                           140
  subtype3              4                                           123
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                     82
  subtype2                                                                     10
  subtype3                                                                      7
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                   0
  subtype2                                                                  13
  subtype3                                                                  22
D9V8, multiclass
D9V9, binary
          cls
clus         0   1
  subtype1   3 158
  subtype2   9 157
  subtype3   2 154
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    3  158
  subtype2    9  157
  subtype3    2  154
     clus
vv    subtype1 subtype2 subtype3
  NO         3        9        2
  YES      158      157      154
D9V10, binary
          cls
clus         0   1
  subtype1 135   7
  subtype2 141   5
  subtype3 131   5
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  135    7
  subtype2  141    5
  subtype3  131    5
     clus
vv    subtype1 subtype2 subtype3
  NO       135      141      131
  YES        7        5        5
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE VERY ADVANCED (T4B)
  subtype1           23                       1  130                   0
  subtype2           49                       3  108                   0
  subtype3           53                      12   86                   1
D9V11, multiclass
          vv
clus        R0  R1  R2  RX
  subtype1 125  11   0  11
  subtype2 136  14   2   6
  subtype3 111  22   2  12
D9V12, multiclass
D9V13, continuous
D9V14, binary
          cls
clus        0  1
  subtype1 77 78
  subtype2 69 94
  subtype3 72 83
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   77   78
  subtype2   69   94
  subtype3   72   83
            clus
vv           subtype1 subtype2 subtype3
  MULTIFOCAL       77       69       72
  UNIFOCAL         78       94       83
D9V15, continuous

Clustering(10) Variable = MIRSEQ_MATURE_CHIERARCHICAL
D10V1, survival
          sevent
clus2        0   1
  subtype1 179  10
  subtype2 123   3
  subtype3 162   1
subtype1 subtype2 subtype3 
     189      126      163 
subtype1 subtype2 subtype3 
      10        3        1 
$subtype1
TCGA-BJ-A0ZB TCGA-BJ-A0ZG TCGA-BJ-A28T TCGA-BJ-A28W TCGA-BJ-A28X TCGA-BJ-A291 
        4.01         7.56         2.76         1.12        17.49        14.50 
TCGA-BJ-A2NA TCGA-BJ-A3EZ TCGA-BJ-A3PR TCGA-BJ-A3PT TCGA-BJ-A3PU TCGA-BJ-A45E 
        2.10         1.38         8.02        12.07        10.03         0.03 
TCGA-BJ-A45H TCGA-BJ-A45I TCGA-BJ-A4O8 TCGA-CE-A27D TCGA-CE-A481 TCGA-CE-A485 
        7.79         6.15         4.93         0.10         0.10         0.10 
TCGA-DE-A4M8 TCGA-DE-A4MA TCGA-DE-A4MB TCGA-DE-A4MC TCGA-DJ-A13O TCGA-DJ-A1QD 
        6.08        30.12        11.57        17.39         7.07        10.98 
TCGA-DJ-A1QE TCGA-DJ-A1QH TCGA-DJ-A1QM TCGA-DJ-A1QO TCGA-DJ-A1QQ TCGA-DJ-A2PS 
       99.98         7.99         0.99         1.02         5.95         1.94 
TCGA-DJ-A2PT TCGA-DJ-A2PV TCGA-DJ-A2PY TCGA-DJ-A2PZ TCGA-DJ-A2Q1 TCGA-DJ-A2Q3 
        9.60         7.96         8.78         8.42         9.34         9.21 
TCGA-DJ-A2Q6 TCGA-DJ-A2Q8 TCGA-DJ-A2Q9 TCGA-DJ-A2QA TCGA-DJ-A3UM TCGA-DJ-A3UQ 
        8.61         7.07        10.36        12.43        31.04        19.56 
TCGA-DJ-A3UU TCGA-DJ-A3UW TCGA-DJ-A3UX TCGA-DJ-A3UY TCGA-DJ-A3UZ TCGA-DJ-A3V0 
       17.69        43.00        11.34        21.37        12.76        25.02 
TCGA-DJ-A3V4 TCGA-DJ-A3V5 TCGA-DJ-A3V8 TCGA-DJ-A3V9 TCGA-DJ-A3VB TCGA-DJ-A3VD 
       14.56        19.20        21.27        20.48        22.92        21.01 
TCGA-DJ-A3VF TCGA-DJ-A3VJ TCGA-DJ-A4UQ TCGA-DJ-A4UT TCGA-DJ-A4UW TCGA-DJ-A4V0 
        7.73        17.36        10.78        12.20         9.44         9.34 
TCGA-DJ-A4V4 TCGA-DO-A2HM TCGA-E3-A3E1 TCGA-E8-A242 TCGA-E8-A2EA TCGA-E8-A3X7 
        3.35         2.30        40.18         1.12        22.29         1.48 
TCGA-E8-A413 TCGA-E8-A414 TCGA-E8-A415 TCGA-E8-A416 TCGA-E8-A432 TCGA-E8-A433 
       13.61        14.27        13.81        14.07        14.43        14.70 
TCGA-E8-A434 TCGA-E8-A436 TCGA-E8-A437 TCGA-E8-A44K TCGA-E8-A44M TCGA-EL-A3CM 
       14.10        14.96         7.69        13.78        13.58        26.73 
TCGA-EL-A3CN TCGA-EL-A3CO TCGA-EL-A3CP TCGA-EL-A3CR TCGA-EL-A3CS TCGA-EL-A3CT 
      155.54        97.74       158.83         7.66        45.53        60.95 
TCGA-EL-A3CU TCGA-EL-A3CV TCGA-EL-A3CW TCGA-EL-A3CY TCGA-EL-A3D0 TCGA-EL-A3D1 
      157.15        37.94        57.01         4.18         1.45        74.27 
TCGA-EL-A3D4 TCGA-EL-A3D6 TCGA-EL-A3GP TCGA-EL-A3GQ TCGA-EL-A3GR TCGA-EL-A3GU 
       45.40       108.36         1.41        30.18       102.84       124.04 
TCGA-EL-A3H5 TCGA-EL-A3H7 TCGA-EL-A3MX TCGA-EL-A3MY TCGA-EL-A3MZ TCGA-EL-A3N3 
       52.73       126.97        57.60        17.49        52.47       147.42 
TCGA-EL-A3T0 TCGA-EL-A3T1 TCGA-EL-A3T9 TCGA-EL-A3TA TCGA-EL-A3ZK TCGA-EL-A3ZL 
      130.72       129.57         5.72        66.90        31.46        50.30 
TCGA-EL-A3ZP TCGA-EL-A3ZS TCGA-EL-A4JW TCGA-EL-A4JX TCGA-EL-A4JZ TCGA-EL-A4K0 
       52.50         7.04        19.27        45.96        37.94        19.00 
TCGA-EL-A4K1 TCGA-EL-A4K4 TCGA-EL-A4KG TCGA-EM-A1CU TCGA-EM-A1YD TCGA-EM-A22I 
       19.59        33.60        13.32        20.91        57.01        14.70 
TCGA-EM-A22M TCGA-EM-A22P TCGA-EM-A2CU TCGA-EM-A2OX TCGA-EM-A2P1 TCGA-EM-A2P3 
       14.50        11.15        13.12        19.73        17.46        14.60 
TCGA-EM-A3AR TCGA-EM-A3FM TCGA-EM-A3O3 TCGA-EM-A3SU TCGA-EM-A3SZ TCGA-EM-A4FF 
       16.77        21.01        14.50        16.41        12.79        70.62 
TCGA-EM-A4FM TCGA-EM-A4FN TCGA-EM-A4FO TCGA-EM-A4FQ TCGA-ET-A25G TCGA-ET-A25L 
        4.80         8.58         8.35         9.80        47.47        14.79 
TCGA-ET-A25M TCGA-ET-A25R TCGA-ET-A2MY TCGA-ET-A2N0 TCGA-ET-A39O TCGA-ET-A39P 
       12.33        20.42        22.09        16.08        61.02        58.72 
TCGA-ET-A39S TCGA-ET-A3BN TCGA-ET-A3BT TCGA-ET-A3BV TCGA-ET-A3DO TCGA-ET-A3DQ 
       55.10        28.24        24.72        42.21        80.81        59.87 
TCGA-ET-A3DR TCGA-ET-A3DU TCGA-ET-A40Q TCGA-ET-A40T TCGA-ET-A4KN TCGA-FE-A22Z 
       43.50        25.32         7.17         2.10         4.01        59.15 
TCGA-FE-A237 TCGA-FE-A3PB TCGA-FK-A3SE TCGA-FK-A3SH TCGA-FY-A3I4 TCGA-FY-A3R6 
       81.34        85.12        21.99        48.10         1.12         0.76 
TCGA-FY-A3R7 TCGA-FY-A3R8 TCGA-FY-A3YR TCGA-FY-A40K TCGA-FY-A40L TCGA-FY-A4B3 
        0.03         4.64         6.84         4.14         6.54         1.35 
TCGA-GE-A2C6 TCGA-H2-A26U TCGA-H2-A421 TCGA-IM-A3EB TCGA-IM-A3U2 TCGA-IM-A3U3 
       12.53        10.98         2.20        48.92        10.26        16.87 
TCGA-IM-A41Y TCGA-IM-A420 TCGA-IM-A4EB TCGA-J8-A3NZ TCGA-J8-A3O2 TCGA-J8-A3YD 
        9.80         2.96         8.65         2.24         1.35        31.82 
TCGA-J8-A3YF TCGA-J8-A3YG TCGA-J8-A42S TCGA-J8-A4HW TCGA-KS-A4I3 TCGA-KS-A4I9 
       24.69        22.29         2.47         2.60        12.03        17.42 
TCGA-KS-A4IC TCGA-L6-A4EU TCGA-MK-A4N6 
       14.70         0.72        16.60 

$subtype2
TCGA-BJ-A0YZ TCGA-BJ-A0Z0 TCGA-BJ-A0Z2 TCGA-BJ-A0ZA TCGA-BJ-A0ZC TCGA-BJ-A0ZE 
       24.79        13.78        18.21        18.87        11.57        16.73 
TCGA-BJ-A18Y TCGA-BJ-A190 TCGA-BJ-A191 TCGA-BJ-A192 TCGA-BJ-A28S TCGA-BJ-A28V 
       23.34        20.58         4.80         8.09        21.01         5.10 
TCGA-BJ-A2N7 TCGA-BJ-A2N8 TCGA-BJ-A3F0 TCGA-BJ-A45C TCGA-BJ-A45D TCGA-BJ-A45F 
        6.02        16.57        14.04         5.72         6.48         3.45 
TCGA-BJ-A45G TCGA-BJ-A45K TCGA-CE-A484 TCGA-DE-A2OL TCGA-DE-A4M9 TCGA-DJ-A13M 
        6.35         8.98         0.39         5.98         4.87         9.01 
TCGA-DJ-A13R TCGA-DJ-A13S TCGA-DJ-A13W TCGA-DJ-A1QG TCGA-DJ-A1QL TCGA-DJ-A2PP 
        3.02         8.71        14.93         6.97         6.97         5.00 
TCGA-DJ-A2Q0 TCGA-DJ-A2Q2 TCGA-DJ-A2QB TCGA-DJ-A3UP TCGA-DJ-A3US TCGA-DJ-A3UT 
        8.12         6.77        10.85        16.37        32.81        15.42 
TCGA-DJ-A3VG TCGA-DJ-A3VM TCGA-DJ-A4UR TCGA-DO-A1JZ TCGA-E3-A3DZ TCGA-EL-A3CX 
        8.32        27.62        10.98        54.90        12.07        80.91 
TCGA-EL-A3CZ TCGA-EL-A3D5 TCGA-EL-A3GO TCGA-EL-A3GW TCGA-EL-A3H1 TCGA-EL-A3H2 
       58.78        33.44        39.32        37.25        49.32        33.47 
TCGA-EL-A3T2 TCGA-EL-A3ZH TCGA-EL-A3ZR TCGA-EL-A4JV TCGA-EL-A4K2 TCGA-EL-A4K6 
       32.48        78.97        48.16        45.80        19.53        28.73 
TCGA-EL-A4KI TCGA-EM-A1CW TCGA-EM-A1YA TCGA-EM-A1YB TCGA-EM-A1YC TCGA-EM-A1YE 
        8.68        18.05        19.79        19.46        54.21        54.08 
TCGA-EM-A22J TCGA-EM-A22K TCGA-EM-A22L TCGA-EM-A22N TCGA-EM-A22Q TCGA-EM-A2CJ 
       14.47        15.72        10.45        10.65        14.20        16.44 
TCGA-EM-A2CK TCGA-EM-A2CL TCGA-EM-A2CN TCGA-EM-A2CO TCGA-EM-A2CP TCGA-EM-A2CQ 
       17.85        13.18        23.51         6.02         2.96        12.30 
TCGA-EM-A2CR TCGA-EM-A2CT TCGA-EM-A2OV TCGA-EM-A2OW TCGA-EM-A2OY TCGA-EM-A2P2 
       13.64        10.49        22.16        13.84        17.59        17.29 
TCGA-EM-A3AI TCGA-EM-A3AJ TCGA-EM-A3AL TCGA-EM-A3AP TCGA-EM-A3FL TCGA-EM-A3FN 
       17.46        18.94        14.14         8.35        16.77        12.07 
TCGA-EM-A3FP TCGA-EM-A3FR TCGA-EM-A3O6 TCGA-EM-A3O8 TCGA-EM-A3O9 TCGA-EM-A3OA 
       17.39        15.02        11.15        12.53         9.24        13.91 
TCGA-EM-A3OB TCGA-EM-A3ST TCGA-EM-A3SY TCGA-EM-A4FH TCGA-EM-A4FK TCGA-EM-A4FR 
        7.82        11.51        13.51        16.90         8.98         5.03 
TCGA-EM-A4FU TCGA-EM-A4G1 TCGA-ET-A25I TCGA-ET-A25P TCGA-ET-A2N3 TCGA-ET-A2N5 
       37.87         0.95        48.20        18.35        19.76        58.22 
TCGA-ET-A39I TCGA-ET-A39N TCGA-ET-A3BW TCGA-ET-A3DS TCGA-ET-A3DV TCGA-ET-A40P 
       13.74        98.56         2.37         0.30       132.36         3.22 
TCGA-ET-A4KQ TCGA-FE-A239 TCGA-FK-A3SD TCGA-FY-A2QD TCGA-FY-A3I5 TCGA-FY-A3NM 
        1.94        33.63         0.89         1.25         1.64         0.99 
TCGA-FY-A3NP TCGA-FY-A3R9 TCGA-FY-A3W9 TCGA-FY-A3WA TCGA-FY-A40M TCGA-H2-A2K9 
       16.14        16.57         0.76         0.95         4.54        11.31 
TCGA-H2-A3RH TCGA-IM-A41Z TCGA-J8-A3O0 TCGA-KS-A41I TCGA-KS-A41L TCGA-KS-A4ID 
       12.46         9.63        43.17        15.95        86.70        20.48 

$subtype3
TCGA-BJ-A0Z3 TCGA-BJ-A0Z5 TCGA-BJ-A0Z9 TCGA-BJ-A0ZH TCGA-BJ-A0ZJ TCGA-BJ-A28R 
       16.34        14.73         8.25        15.12        17.69         4.87 
TCGA-BJ-A28Z TCGA-BJ-A290 TCGA-BJ-A45J TCGA-BJ-A4O9 TCGA-CE-A13K TCGA-CE-A3MD 
        1.22        20.58         5.06         5.95         0.53         0.20 
TCGA-CE-A3ME TCGA-CE-A482 TCGA-CE-A483 TCGA-DE-A0XZ TCGA-DE-A0Y2 TCGA-DE-A0Y3 
        0.23         0.07         0.10        20.22        15.42        36.46 
TCGA-DE-A3KN TCGA-DE-A4MD TCGA-DJ-A13P TCGA-DJ-A13T TCGA-DJ-A13U TCGA-DJ-A13X 
       15.85        12.00       138.05        24.92        12.92         7.99 
TCGA-DJ-A1QF TCGA-DJ-A1QI TCGA-DJ-A1QN TCGA-DJ-A2PN TCGA-DJ-A2PO TCGA-DJ-A2PQ 
       18.05        15.02         8.98        10.06         7.96        20.48 
TCGA-DJ-A2PR TCGA-DJ-A2PU TCGA-DJ-A2PW TCGA-DJ-A2PX TCGA-DJ-A2Q4 TCGA-DJ-A2Q5 
       10.45        10.26         7.69         5.03         9.44         9.90 
TCGA-DJ-A2Q7 TCGA-DJ-A2QC TCGA-DJ-A3UK TCGA-DJ-A3UN TCGA-DJ-A3UO TCGA-DJ-A3UR 
        9.57         9.99        15.09        12.49        31.43        36.33 
TCGA-DJ-A3V2 TCGA-DJ-A3V3 TCGA-DJ-A3V7 TCGA-DJ-A3VA TCGA-DJ-A3VE TCGA-DJ-A3VL 
       20.22        30.58         9.83        11.93        18.94        17.19 
TCGA-DJ-A4UL TCGA-DJ-A4V2 TCGA-DJ-A4V5 TCGA-DO-A1K0 TCGA-E3-A3DY TCGA-E3-A3E0 
       11.93         3.09        16.14        21.53        31.07        66.35 
TCGA-E3-A3E2 TCGA-E3-A3E3 TCGA-E3-A3E5 TCGA-E8-A417 TCGA-E8-A418 TCGA-E8-A438 
       63.16        30.28        14.04        14.27         1.48        20.68 
TCGA-EL-A3CL TCGA-EL-A3GS TCGA-EL-A3GV TCGA-EL-A3GX TCGA-EL-A3GY TCGA-EL-A3H4 
       31.63        65.39        50.37       147.75       101.13        38.66 
TCGA-EL-A3H8 TCGA-EL-A3MW TCGA-EL-A3N2 TCGA-EL-A3T3 TCGA-EL-A3T6 TCGA-EL-A3T7 
      131.15       108.66        12.16       116.91        98.20        41.29 
TCGA-EL-A3T8 TCGA-EL-A3TB TCGA-EL-A3ZG TCGA-EL-A3ZQ TCGA-EL-A3ZT TCGA-EL-A4K7 
       95.38        82.82        77.33        45.53        44.61        41.13 
TCGA-EL-A4K9 TCGA-EL-A4KD TCGA-EL-A4KH TCGA-EM-A1CS TCGA-EM-A1CT TCGA-EM-A1CV 
       37.78        29.95        11.87        26.86        18.18        12.36 
TCGA-EM-A22O TCGA-EM-A2CS TCGA-EM-A2OZ TCGA-EM-A2P0 TCGA-EM-A3AK TCGA-EM-A3AN 
       11.74        15.16        12.07        17.59        15.68        19.63 
TCGA-EM-A3AO TCGA-EM-A3AQ TCGA-EM-A3FJ TCGA-EM-A3FK TCGA-EM-A3FO TCGA-EM-A3FQ 
       13.38        16.44        27.95        23.77        17.49        16.18 
TCGA-EM-A3O7 TCGA-EM-A3SX TCGA-EM-A4FV TCGA-ET-A25J TCGA-ET-A25K TCGA-ET-A25N 
        7.33        15.62        12.72        29.69        32.35        14.79 
TCGA-ET-A25O TCGA-ET-A2MX TCGA-ET-A2MZ TCGA-ET-A2N1 TCGA-ET-A2N4 TCGA-ET-A39J 
       27.09        54.02        12.26        29.19         2.66        71.01 
TCGA-ET-A39K TCGA-ET-A39L TCGA-ET-A39M TCGA-ET-A39R TCGA-ET-A39T TCGA-ET-A3BO 
       72.49        65.33        84.89        57.11        59.15         5.82 
TCGA-ET-A3BP TCGA-ET-A3BQ TCGA-ET-A3BS TCGA-ET-A3BU TCGA-ET-A3BX TCGA-ET-A3DP 
        4.18         2.43         5.52        38.30         4.50        56.88 
TCGA-ET-A3DT TCGA-ET-A3DW TCGA-ET-A40R TCGA-ET-A40S TCGA-FE-A230 TCGA-FE-A231 
       17.98        24.69         4.80         5.00        59.70        31.59 
TCGA-FE-A232 TCGA-FE-A233 TCGA-FE-A234 TCGA-FE-A235 TCGA-FE-A236 TCGA-FE-A238 
       44.25        24.69        68.22       102.90        66.77        39.95 
TCGA-FE-A23A TCGA-FE-A3PA TCGA-FE-A3PC TCGA-FE-A3PD TCGA-FK-A3S3 TCGA-FK-A3SB 
       81.83        94.42        85.64        78.77        46.06         4.08 
TCGA-FK-A3SG TCGA-FK-A4UB TCGA-FY-A3BL TCGA-FY-A3ON TCGA-FY-A3RA TCGA-FY-A40N 
        0.92        91.13         1.15         1.51        18.08         0.89 
TCGA-FY-A4B4 TCGA-H2-A3RI TCGA-H2-A422 TCGA-IM-A3ED TCGA-J8-A3O1 TCGA-J8-A3YE 
        1.15         2.96         2.89        47.41        27.19        27.81 
TCGA-J8-A3YH TCGA-J8-A4HY TCGA-KS-A41F TCGA-KS-A41J TCGA-KS-A4I1 TCGA-KS-A4I5 
        5.72         0.20       120.99        15.68         5.98         6.71 
TCGA-KS-A4I7 TCGA-KS-A4IB TCGA-L6-A4EP TCGA-L6-A4EQ TCGA-L6-A4ET TCGA-MK-A4N7 
       12.36        64.54         0.59        11.87         1.12        14.47 
TCGA-MK-A4N9 
        8.71 

subtype1 subtype2 subtype3 
    0.03     0.30     0.07 
subtype1 subtype2 subtype3 
  158.83   132.36   147.75 
subtype1 subtype2 subtype3 
  14.500   13.975   16.440 
[1] "0.0 - 158.8 (14.5)" "0.3 - 132.4 (14.0)" "0.1 - 147.8 (16.4)"
  [1] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [19] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [25] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [31] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [37] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [43] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [49] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [55] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [61] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [67] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [73] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [79] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [85] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [91] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[103] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[109] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[115] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[121] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[133] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[139] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[145] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[151] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[157] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[169] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[175] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[193] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[199] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[205] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[211] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[217] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[223] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[229] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[235] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[241] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[247] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[253] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[259] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[265] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[271] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[277] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[283] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[289] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[295] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[301] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[307] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[313] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[319] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[325] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[331] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[337] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[343] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[349] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[355] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[361] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[367] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[373] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[379] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[385] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[391] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[397] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[403] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[409] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[415] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[421] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[427] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[433] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[439] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[445] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[451] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[457] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[463] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[469] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[475] "subtype1" "subtype1" "subtype3" "subtype3"
  [1] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [19] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [25] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [31] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [37] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [43] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [49] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [55] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [61] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [67] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [73] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [79] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [85] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [91] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[103] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[109] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[115] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[121] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[133] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[139] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[145] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[151] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[157] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[169] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[175] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[193] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[199] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[205] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[211] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[217] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[223] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[229] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[235] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[241] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[247] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[253] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[259] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[265] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[271] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[277] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[283] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[289] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[295] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[301] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[307] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[313] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[319] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[325] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[331] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[337] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[343] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[349] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[355] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[361] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[367] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[373] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[379] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[385] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[391] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[397] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[403] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[409] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[415] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[421] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[427] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[433] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[439] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[445] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[451] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[457] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[463] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[469] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[475] "subtype1" "subtype1" "subtype3" "subtype3"
  [1] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
  [7] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
 [13] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [19] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype3"
 [25] "subtype3" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [31] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [37] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [43] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
 [49] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [55] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [61] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
 [67] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [73] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype2"
 [79] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype1"
 [85] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [91] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[103] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[109] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[115] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[121] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[127] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[133] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[139] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[145] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[151] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype2"
[157] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[163] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[169] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[175] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[181] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[187] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[193] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
[199] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[205] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
[211] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[217] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[223] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[229] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[235] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[241] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
[247] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[253] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[259] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[265] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[271] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[277] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[283] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[289] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[295] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[301] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[307] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[313] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[319] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[325] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[331] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype3"
[337] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
[343] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[349] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[355] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[361] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[367] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype3"
[373] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
[379] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[385] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[391] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[397] "subtype1" "subtype3" "subtype2" "subtype3" "subtype3" "subtype1"
[403] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[409] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[415] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
[421] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[427] "subtype1" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[433] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[439] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[445] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[451] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[457] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[463] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[469] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[475] "subtype1" "subtype1" "subtype3" "subtype3"
D10V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV STAGE IVA STAGE IVC
  subtype1      96        5        61        1        26         2
  subtype2      74       28        19        1         2         2
  subtype3     103       18        26        0        15         2
D10V3, multiclass
          vv
clus       T1 T2 T3 T4
  subtype1 59 40 78 13
  subtype2 42 54 30  1
  subtype3 39 67 51  7
D10V4, multiclass
D10V5, binary
          cls
clus         0   1
  subtype1  69 112
  subtype2  85  16
  subtype3  66  88
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   69  112
  subtype2   85   16
  subtype3   66   88
   clus
vv  subtype1 subtype2 subtype3
  0       69       85       66
  1      112       16       88
          vv
clus        M0  M1  MX
  subtype1 126   2  64
  subtype2  51   3  72
  subtype3  87   4  73
D10V6, multiclass
D10V7, binary
          cls
clus         0   1
  subtype1 145  47
  subtype2  92  35
  subtype3 117  47
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  145   47
  subtype2   92   35
  subtype3  117   47
        clus
vv       subtype1 subtype2 subtype3
  FEMALE      145       92      117
  MALE         47       35       47
          vv
clus       OTHER  SPECIFY THYROID PAPILLARY CARCINOMA - CLASSICAL/USUAL
  subtype1              4                                           150
  subtype2              2                                            49
  subtype3              3                                           141
          vv
clus       THYROID PAPILLARY CARCINOMA - FOLLICULAR (>= 99% FOLLICULAR PATTERNED)
  subtype1                                                                     10
  subtype2                                                                     76
  subtype3                                                                     13
          vv
clus       THYROID PAPILLARY CARCINOMA - TALL CELL (>= 50% TALL CELL FEATURES)
  subtype1                                                                  28
  subtype2                                                                   0
  subtype3                                                                   7
D10V8, multiclass
D10V9, binary
          cls
clus         0   1
  subtype1   2 190
  subtype2   2 125
  subtype3  10 154
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2  190
  subtype2    2  125
  subtype3   10  154
     clus
vv    subtype1 subtype2 subtype3
  NO         2        2       10
  YES      190      125      154
D10V10, binary
          cls
clus         0   1
  subtype1 163   6
  subtype2 107   5
  subtype3 137   6
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  163    6
  subtype2  107    5
  subtype3  137    6
     clus
vv    subtype1 subtype2 subtype3
  NO       163      107      137
  YES        6        5        6
          vv
clus       MINIMAL (T3) MODERATE/ADVANCED (T4A) NONE VERY ADVANCED (T4B)
  subtype1           72                      12  100                   1
  subtype2           13                       0  109                   0
  subtype3           40                       4  115                   0
D10V11, multiclass
          vv
clus        R0  R1  R2  RX
  subtype1 137  27   3  14
  subtype2 101   9   0   6
  subtype3 134  11   1   9
D10V12, multiclass
D10V13, continuous
D10V14, binary
          cls
clus         0   1
  subtype1  88 102
  subtype2  60  65
  subtype3  70  88
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   88  102
  subtype2   60   65
  subtype3   70   88
            clus
vv           subtype1 subtype2 subtype3
  MULTIFOCAL       88       60       70
  UNIFOCAL        102       65       88
D10V15, continuous
> q(save="no")
