		Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p	67 (13%)	447	0.20638	1	0.13619	1	3.9801e-18	1.58e-15	1.2134e-08	3.32e-06	0.080723	1	0.055931	1	1.3563e-10	4.19e-08	2.2263e-08	5.9e-06	3.0935e-08	8.04e-06	8.3908e-10	2.51e-07	4.812e-05	0.00977	4.1535e-06	0.000947
1q	188 (37%)	326	0.093417	1	0.13322	1	0.0001233	0.0237	0.044906	1	0.15778	1	0.04584	1	0.019088	1	0.1057	1	0.029842	1	0.13624	1	0.65619	1	0.017218	1
2p	98 (19%)	416	0.85548	1	0.68288	1	1.6222e-34	7.38e-32	7.9797e-09	2.21e-06	0.056687	1	0.53502	1	4.7819e-10	1.44e-07	1.9878e-09	5.8e-07	3.2548e-07	8.04e-05	1.7621e-07	4.46e-05	0.00027068	0.0498	3.6764e-05	0.00768
2q	87 (17%)	427	0.28395	1	0.66714	1	4.0429e-32	1.83e-29	3.3437e-07	8.19e-05	0.046356	1	1	1	2.3875e-09	6.9e-07	4.2881e-09	1.22e-06	9.6e-08	2.46e-05	2.3091e-08	6.1e-06	0.00032096	0.0581	2.3944e-05	0.00505
3p	91 (18%)	423	0.036973	1	0.15766	1	1.2334e-31	5.56e-29	1.0213e-09	3.03e-07	0.058114	1	0.15707	1	7.044e-17	2.7e-14	3.0716e-14	1.1e-11	8.9995e-09	2.48e-06	1.3359e-08	3.63e-06	0.00011538	0.0224	2.5702e-07	6.4e-05
3q	105 (20%)	409	0.019232	1	0.042551	1	2.1713e-35	9.9e-33	1.2015e-14	4.35e-12	0.022046	1	0.013058	1	3.2795e-21	1.38e-18	3.5484e-19	1.43e-16	1.1567e-10	3.59e-08	1.3559e-11	4.31e-09	1.2267e-05	0.0027	3.0794e-10	9.36e-08
4p	110 (21%)	404	0.008879	1	0.00059461	0.102	9.9783e-44	4.65e-41	2.7071e-16	1.01e-13	0.0005054	0.0889	0.029669	1	3.7031e-26	1.62e-23	4.7683e-23	2.05e-20	8.6456e-21	3.6e-18	6.1755e-17	2.38e-14	4.5019e-07	0.000108	8.7369e-10	2.6e-07
4q	105 (20%)	409	0.17518	1	0.062329	1	1.9272e-42	8.94e-40	1.1053e-16	4.21e-14	0.012773	1	0.16823	1	1.6966e-26	7.48e-24	3.8333e-21	1.61e-18	2.8218e-16	1.05e-13	1.591e-16	6.05e-14	6.3423e-07	0.000151	2.1289e-09	6.17e-07
5p	103 (20%)	411	0.10137	1	0.0044673	0.657	5.1447e-39	2.37e-36	1.6206e-17	6.34e-15	0.0094198	1	0.13324	1	5.6064e-21	2.34e-18	3.7673e-20	1.56e-17	2.3496e-16	8.81e-14	5.1612e-14	1.82e-11	1.3403e-08	3.63e-06	3.4216e-12	1.13e-09
5q	91 (18%)	423	0.012904	1	0.0019294	0.307	9.4512e-36	4.32e-33	7.8443e-16	2.89e-13	0.0062348	0.879	0.065286	1	1.8158e-18	7.25e-16	6.0466e-18	2.39e-15	1.9145e-13	6.62e-11	2.725e-13	9.37e-11	3.4393e-07	8.39e-05	2.3951e-10	7.33e-08
6p	90 (18%)	424	0.0872	1	0.042551	1	1.7145e-31	7.72e-29	6.3482e-09	1.76e-06	0.034132	1	0.048677	1	4.2689e-13	1.45e-10	5.6163e-11	1.77e-08	1.2141e-08	3.32e-06	5.48e-09	1.54e-06	0.0034518	0.525	0.00067922	0.113
6q	83 (16%)	431	0.0872	1	0.042551	1	2.0422e-27	9.05e-25	4.8037e-07	0.000115	0.019355	1	0.048677	1	2.2666e-10	6.96e-08	5.005e-09	1.41e-06	1.9404e-06	0.000452	2.0783e-07	5.24e-05	0.054032	1	0.0050856	0.743
7p	105 (20%)	409	0.11471	1	0.12833	1	9.078e-27	4.01e-24	0.00012203	0.0236	0.22989	1	0.66522	1	2.4738e-11	7.84e-09	1.1178e-07	2.85e-05	3.4581e-06	0.000792	1.8076e-05	0.00389	0.022379	1	0.039169	1
7q	101 (20%)	413	0.68227	1	0.88876	1	1.848e-26	8.13e-24	1.4798e-05	0.00324	0.77793	1	0.27402	1	9.7474e-12	3.13e-09	3.2931e-07	8.1e-05	3.4727e-07	8.44e-05	2.1988e-06	0.00051	0.0052393	0.76	0.0031209	0.477
8p	188 (37%)	326	0.0029503	0.457	0.0042068	0.631	1.3106e-36	6.02e-34	2.916e-08	7.61e-06	0.0003589	0.0642	0.6067	1	3.9036e-15	1.43e-12	4.1209e-13	1.41e-10	2.7286e-12	9.03e-10	3.6571e-09	1.05e-06	9.2314e-05	0.0183	1.8407e-05	0.00394
8q	174 (34%)	340	0.0029503	0.457	0.0042068	0.631	6.6814e-31	3e-28	0.00020288	0.0379	0.00019681	0.037	0.86379	1	6.1612e-09	1.72e-06	1.0617e-08	2.92e-06	2.1765e-08	5.79e-06	1.0236e-05	0.00226	0.00060453	0.103	0.0018952	0.303
9p	120 (23%)	394	0.00060132	0.103	3.9715e-05	0.00826	4.4459e-48	2.1e-45	1.5707e-13	5.47e-11	0.00061308	0.104	0.039529	1	7.1013e-21	2.96e-18	1.3616e-18	5.45e-16	5.1493e-20	2.12e-17	5.8468e-12	1.91e-09	0.00039118	0.0696	5.3874e-06	0.00122
9q	126 (25%)	388	2.3489e-05	0.00498	1.1294e-06	0.000265	3.0765e-51	1.46e-48	5.9321e-12	1.93e-09	0.00033736	0.0607	0.065608	1	5.3489e-22	2.27e-19	6.8848e-20	2.82e-17	5.1837e-25	2.26e-22	1.5435e-12	5.14e-10	0.00017787	0.0338	6.3369e-06	0.00143
10p	152 (30%)	362	0.033729	1	0.092875	1	4.1529e-14	1.47e-11	0.029345	1	0.11913	1	0.40608	1	0.00031374	0.0571	0.00028858	0.0528	0.0017425	0.281	0.19987	1	0.86356	1	0.24291	1
10q	142 (28%)	372	0.010073	1	0.036535	1	1.5163e-12	5.06e-10	0.049626	1	0.14218	1	0.24703	1	0.0010015	0.164	0.0059103	0.839	0.0091029	1	0.49685	1	0.44483	1	0.095842	1
11p	93 (18%)	421	0.0020193	0.317	0.0075524	1	5.9872e-36	2.74e-33	6.0916e-12	1.97e-09	0.31268	1	0.63769	1	3.4382e-17	1.33e-14	1.9293e-16	7.27e-14	1.5061e-14	5.41e-12	3.4424e-09	9.88e-07	9.407e-05	0.0185	2.8393e-08	7.44e-06
11q	87 (17%)	427	NA	NA	NA	NA	2.525e-32	1.15e-29	8.0636e-11	2.52e-08	0.4987	1	0.8017	1	1.2808e-14	4.61e-12	9.1095e-14	3.2e-11	1.8637e-13	6.47e-11	2.2001e-07	5.52e-05	0.00012658	0.0242	3.476e-10	1.05e-07
12p	107 (21%)	407	0.15709	1	0.17536	1	1.2613e-27	5.6e-25	5.352e-10	1.61e-07	0.092689	1	0.22491	1	2.4608e-15	9.06e-13	1.2921e-11	4.12e-09	1.4924e-09	4.42e-07	5.4155e-08	1.39e-05	2.4688e-07	6.17e-05	2.5589e-08	6.73e-06
12q	85 (17%)	429	0.25494	1	0.43447	1	7.7141e-18	3.05e-15	4.219e-07	0.000102	0.22184	1	0.13324	1	2.4822e-10	7.57e-08	2.0434e-08	5.48e-06	6.5715e-05	0.0133	8.9305e-06	0.002	2.6457e-05	0.00556	4.5739e-06	0.00104
13q	114 (22%)	400	0.15397	1	0.027594	1	1.6002e-39	7.39e-37	1.0729e-10	3.34e-08	0.0052403	0.76	0.090054	1	2.1159e-16	7.96e-14	6.0643e-17	2.34e-14	4.804e-14	1.7e-11	6.0489e-11	1.89e-08	0.0042558	0.631	8.1828e-05	0.0164
14q	95 (18%)	419	0.019232	1	0.042551	1	3.198e-32	1.45e-29	2.8024e-13	9.61e-11	0.018513	1	0.013058	1	1.2488e-25	5.46e-23	2.8812e-19	1.17e-16	2.5351e-13	8.75e-11	1.0333e-13	3.62e-11	1.4797e-05	0.00324	4.7931e-08	1.24e-05
15q	112 (22%)	402	0.0005666	0.0992	4.1747e-05	0.00864	1.4683e-44	6.87e-42	4.4986e-13	1.52e-10	0.0010399	0.17	0.15707	1	8.4112e-23	3.61e-20	7.7451e-22	3.28e-19	9.6765e-20	3.96e-17	3.9745e-15	1.45e-12	3.0544e-06	0.000703	3.7859e-08	9.81e-06
16p	116 (23%)	398	0.0005666	0.0992	4.1747e-05	0.00864	5.5853e-45	2.63e-42	2.4372e-12	8.09e-10	0.1155	1	0.41073	1	1.1747e-22	5.03e-20	9.6581e-18	3.81e-15	2.2973e-17	8.94e-15	5.6298e-11	1.77e-08	8.3466e-05	0.0167	2.6726e-07	6.63e-05
16q	144 (28%)	370	0.00077129	0.128	9.7998e-05	0.0192	5.2974e-51	2.52e-48	3.4954e-14	1.24e-11	0.20249	1	0.69807	1	2.9558e-26	1.3e-23	5.1201e-20	2.11e-17	3.1323e-19	1.27e-16	8.5069e-12	2.74e-09	2.7952e-06	0.000646	3.8241e-09	1.09e-06
17p	132 (26%)	382	0.00077129	0.128	9.7998e-05	0.0192	1.3059e-62	6.24e-60	1.0221e-16	3.9e-14	0.0056777	0.812	0.53502	1	1.0145e-29	4.52e-27	1.7244e-22	7.35e-20	4.5528e-23	1.96e-20	6.1479e-12	1.99e-09	0.00026314	0.0487	7.4973e-07	0.000178
17q	114 (22%)	400	0.0005666	0.0992	4.1747e-05	0.00864	1.9037e-49	9e-47	8.3449e-13	2.8e-10	0.11461	1	0.37819	1	4.1854e-22	1.78e-19	4.5221e-16	1.67e-13	4.1469e-16	1.54e-13	1.8643e-08	5.03e-06	0.00063128	0.106	2.1867e-05	0.00466
18p	117 (23%)	397	0.18818	1	0.095096	1	1.4971e-45	7.05e-43	3.971e-19	1.59e-16	0.029142	1	0.13324	1	4.0915e-23	1.77e-20	3.8054e-21	1.6e-18	2.1553e-20	8.94e-18	7.9011e-17	3.03e-14	2.5049e-09	7.21e-07	2.9399e-12	9.7e-10
18q	105 (20%)	409	0.051477	1	0.027594	1	3.958e-38	1.82e-35	8.9071e-15	3.23e-12	0.14504	1	0.18627	1	5.3545e-18	2.13e-15	1.8597e-19	7.57e-17	3.6665e-17	1.42e-14	8.3229e-15	3.04e-12	1.7383e-07	4.42e-05	1.9341e-09	5.67e-07
19p	107 (21%)	407	0.0020193	0.317	0.00021801	0.0406	6.4892e-44	3.03e-41	1.7849e-16	6.75e-14	0.062102	1	0.10245	1	5.1246e-24	2.23e-21	1.6323e-22	6.97e-20	4.0071e-20	1.65e-17	4.3934e-12	1.44e-09	1.3558e-06	0.000317	5.6611e-09	1.59e-06
19q	107 (21%)	407	0.036973	1	0.0075524	1	3.6868e-43	1.71e-40	5.257e-13	1.77e-10	0.016952	1	0.34594	1	3.5239e-23	1.53e-20	5.7405e-24	2.49e-21	3.2218e-19	1.3e-16	6.2843e-13	2.11e-10	9.6595e-06	0.00215	1.5227e-09	4.49e-07
20p	124 (24%)	390	0.051454	1	0.0075524	1	6.3594e-45	2.98e-42	4.949e-12	1.62e-09	0.056295	1	0.27402	1	2.1443e-17	8.36e-15	1.6808e-16	6.37e-14	6.1077e-14	2.15e-11	1.7274e-10	5.32e-08	1.5886e-05	0.00345	1.9601e-08	5.27e-06
20q	133 (26%)	381	0.012904	1	0.0019294	0.307	1.7304e-50	8.2e-48	4.2532e-13	1.45e-10	0.033931	1	0.30119	1	2.362e-19	9.59e-17	1.2889e-17	5.05e-15	1.2186e-14	4.4e-12	5.2572e-11	1.66e-08	1.7292e-05	0.00374	2.0159e-09	5.87e-07
21q	87 (17%)	427	0.051454	1	0.0075524	1	4.1429e-30	1.85e-27	1.7195e-09	5.06e-07	0.037974	1	0.069774	1	1.0458e-17	4.11e-15	8.7189e-15	3.17e-12	3.1805e-16	1.18e-13	1.3233e-13	4.62e-11	3.8485e-07	9.31e-05	4.9858e-10	1.5e-07
22q	136 (26%)	378	0.0038145	0.576	0.0004537	0.0803	2.3007e-58	1.1e-55	1.8547e-19	7.57e-17	0.011646	1	0.65949	1	2.5601e-30	1.15e-27	8.7858e-28	3.91e-25	1.3221e-21	5.58e-19	3.1856e-14	1.14e-11	1.1112e-06	0.000262	4.2745e-13	1.45e-10
xq	130 (25%)	384	0.033593	1	0.0072233	1	1.515e-40	7.01e-38	1.0027e-05	0.00223	0.0016351	0.265	0.47114	1	1.0705e-11	3.43e-09	2.0502e-08	5.48e-06	4.7065e-09	1.33e-06	9.1073e-05	0.0181	0.00018576	0.0351	4.7585e-05	0.00971
