
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/UCEC-TP/6462242/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/UCEC-TP/6462233/UCEC-TP.transferedmergedcluster.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=UCEC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=UCEC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/UCEC-TP/6462233/UCEC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/UCEC-TP/6462242/transformed.cor.cli.txt"

nPatients in clinical file=525, in cluster file=514, common to both=514
[1]  40 514
[1] "1P MUTATION ANALYSIS"
[1] 3
  1P MUTATED 1P WILD-TYPE 
          67          447 
  1P MUTATED 1P WILD-TYPE 
          67          447 
[1] "1Q MUTATION ANALYSIS"
[1] 3
  1Q MUTATED 1Q WILD-TYPE 
         188          326 
  1Q MUTATED 1Q WILD-TYPE 
         188          326 
[1] "2P MUTATION ANALYSIS"
[1] 3
  2P MUTATED 2P WILD-TYPE 
          98          416 
  2P MUTATED 2P WILD-TYPE 
          98          416 
[1] "2Q MUTATION ANALYSIS"
[1] 3
  2Q MUTATED 2Q WILD-TYPE 
          87          427 
  2Q MUTATED 2Q WILD-TYPE 
          87          427 
[1] "3P MUTATION ANALYSIS"
[1] 3
  3P MUTATED 3P WILD-TYPE 
          91          423 
  3P MUTATED 3P WILD-TYPE 
          91          423 
[1] "3Q MUTATION ANALYSIS"
[1] 3
  3Q MUTATED 3Q WILD-TYPE 
         105          409 
  3Q MUTATED 3Q WILD-TYPE 
         105          409 
[1] "4P MUTATION ANALYSIS"
[1] 3
  4P MUTATED 4P WILD-TYPE 
         110          404 
  4P MUTATED 4P WILD-TYPE 
         110          404 
[1] "4Q MUTATION ANALYSIS"
[1] 3
  4Q MUTATED 4Q WILD-TYPE 
         105          409 
  4Q MUTATED 4Q WILD-TYPE 
         105          409 
[1] "5P MUTATION ANALYSIS"
[1] 3
  5P MUTATED 5P WILD-TYPE 
         103          411 
  5P MUTATED 5P WILD-TYPE 
         103          411 
[1] "5Q MUTATION ANALYSIS"
[1] 3
  5Q MUTATED 5Q WILD-TYPE 
          91          423 
  5Q MUTATED 5Q WILD-TYPE 
          91          423 
[1] "6P MUTATION ANALYSIS"
[1] 3
  6P MUTATED 6P WILD-TYPE 
          90          424 
  6P MUTATED 6P WILD-TYPE 
          90          424 
[1] "6Q MUTATION ANALYSIS"
[1] 3
  6Q MUTATED 6Q WILD-TYPE 
          83          431 
  6Q MUTATED 6Q WILD-TYPE 
          83          431 
[1] "7P MUTATION ANALYSIS"
[1] 3
  7P MUTATED 7P WILD-TYPE 
         105          409 
  7P MUTATED 7P WILD-TYPE 
         105          409 
[1] "7Q MUTATION ANALYSIS"
[1] 3
  7Q MUTATED 7Q WILD-TYPE 
         101          413 
  7Q MUTATED 7Q WILD-TYPE 
         101          413 
[1] "8P MUTATION ANALYSIS"
[1] 3
  8P MUTATED 8P WILD-TYPE 
         188          326 
  8P MUTATED 8P WILD-TYPE 
         188          326 
[1] "8Q MUTATION ANALYSIS"
[1] 3
  8Q MUTATED 8Q WILD-TYPE 
         174          340 
  8Q MUTATED 8Q WILD-TYPE 
         174          340 
[1] "9P MUTATION ANALYSIS"
[1] 3
  9P MUTATED 9P WILD-TYPE 
         120          394 
  9P MUTATED 9P WILD-TYPE 
         120          394 
[1] "9Q MUTATION ANALYSIS"
[1] 3
  9Q MUTATED 9Q WILD-TYPE 
         126          388 
  9Q MUTATED 9Q WILD-TYPE 
         126          388 
[1] "10P MUTATION ANALYSIS"
[1] 3
  10P MUTATED 10P WILD-TYPE 
          152           362 
  10P MUTATED 10P WILD-TYPE 
          152           362 
[1] "10Q MUTATION ANALYSIS"
[1] 3
  10Q MUTATED 10Q WILD-TYPE 
          142           372 
  10Q MUTATED 10Q WILD-TYPE 
          142           372 
[1] "11P MUTATION ANALYSIS"
[1] 3
  11P MUTATED 11P WILD-TYPE 
           93           421 
  11P MUTATED 11P WILD-TYPE 
           93           421 
[1] "11Q MUTATION ANALYSIS"
[1] 3
  11Q MUTATED 11Q WILD-TYPE 
           87           427 
  11Q MUTATED 11Q WILD-TYPE 
           87           427 
[1] "12P MUTATION ANALYSIS"
[1] 3
  12P MUTATED 12P WILD-TYPE 
          107           407 
  12P MUTATED 12P WILD-TYPE 
          107           407 
[1] "12Q MUTATION ANALYSIS"
[1] 3
  12Q MUTATED 12Q WILD-TYPE 
           85           429 
  12Q MUTATED 12Q WILD-TYPE 
           85           429 
[1] "13Q MUTATION ANALYSIS"
[1] 3
  13Q MUTATED 13Q WILD-TYPE 
          114           400 
  13Q MUTATED 13Q WILD-TYPE 
          114           400 
[1] "14Q MUTATION ANALYSIS"
[1] 3
  14Q MUTATED 14Q WILD-TYPE 
           95           419 
  14Q MUTATED 14Q WILD-TYPE 
           95           419 
[1] "15Q MUTATION ANALYSIS"
[1] 3
  15Q MUTATED 15Q WILD-TYPE 
          112           402 
  15Q MUTATED 15Q WILD-TYPE 
          112           402 
[1] "16P MUTATION ANALYSIS"
[1] 3
  16P MUTATED 16P WILD-TYPE 
          116           398 
  16P MUTATED 16P WILD-TYPE 
          116           398 
[1] "16Q MUTATION ANALYSIS"
[1] 3
  16Q MUTATED 16Q WILD-TYPE 
          144           370 
  16Q MUTATED 16Q WILD-TYPE 
          144           370 
[1] "17P MUTATION ANALYSIS"
[1] 3
  17P MUTATED 17P WILD-TYPE 
          132           382 
  17P MUTATED 17P WILD-TYPE 
          132           382 
[1] "17Q MUTATION ANALYSIS"
[1] 3
  17Q MUTATED 17Q WILD-TYPE 
          114           400 
  17Q MUTATED 17Q WILD-TYPE 
          114           400 
[1] "18P MUTATION ANALYSIS"
[1] 3
  18P MUTATED 18P WILD-TYPE 
          117           397 
  18P MUTATED 18P WILD-TYPE 
          117           397 
[1] "18Q MUTATION ANALYSIS"
[1] 3
  18Q MUTATED 18Q WILD-TYPE 
          105           409 
  18Q MUTATED 18Q WILD-TYPE 
          105           409 
[1] "19P MUTATION ANALYSIS"
[1] 3
  19P MUTATED 19P WILD-TYPE 
          107           407 
  19P MUTATED 19P WILD-TYPE 
          107           407 
[1] "19Q MUTATION ANALYSIS"
[1] 3
  19Q MUTATED 19Q WILD-TYPE 
          107           407 
  19Q MUTATED 19Q WILD-TYPE 
          107           407 
[1] "20P MUTATION ANALYSIS"
[1] 3
  20P MUTATED 20P WILD-TYPE 
          124           390 
  20P MUTATED 20P WILD-TYPE 
          124           390 
[1] "20Q MUTATION ANALYSIS"
[1] 3
  20Q MUTATED 20Q WILD-TYPE 
          133           381 
  20Q MUTATED 20Q WILD-TYPE 
          133           381 
[1] "21Q MUTATION ANALYSIS"
[1] 3
  21Q MUTATED 21Q WILD-TYPE 
           87           427 
  21Q MUTATED 21Q WILD-TYPE 
           87           427 
[1] "22Q MUTATION ANALYSIS"
[1] 3
  22Q MUTATED 22Q WILD-TYPE 
          136           378 
  22Q MUTATED 22Q WILD-TYPE 
          136           378 
[1] "XQ MUTATION ANALYSIS"
[1] 3
  XQ MUTATED XQ WILD-TYPE 
         130          384 
  XQ MUTATED XQ WILD-TYPE 
         130          384 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 514 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 514 columns, 0 survival variables, and 12 non-survival variables.
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=6, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=6, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=2, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1P MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P MUTATED        3      3      0      0
  1P WILD-TYPE     11     14     12     10
D1V1, multiclass
        clus
vv       1P MUTATED 1P WILD-TYPE
  CLUS_1          3           11
  CLUS_2          3           14
  CLUS_3          0           12
  CLUS_4          0           10
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  1P MUTATED        3      0      3
  1P WILD-TYPE     16     19     12
D1V2, multiclass
        clus
vv       1P MUTATED 1P WILD-TYPE
  CLUS_1          3           16
  CLUS_2          0           19
  CLUS_3          3           12
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1P MUTATED        6      8     49      3      1      0
  1P WILD-TYPE    294     16    103     19     14      1
D1V3, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  1P MUTATED       43      6      9
  1P WILD-TYPE    109     82    151
D1V4, multiclass
        clus
vv       1P MUTATED 1P WILD-TYPE
  CLUS_1         43          109
  CLUS_2          6           82
  CLUS_3          9          151
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1P MUTATED        4      7      0      1      2      2
  1P WILD-TYPE     37     30     39     11     39     22
D1V5, multiclass
D1V6, binary
              cls
clus             0   1
  1P MUTATED     6  10
  1P WILD-TYPE 115  63
[1] "tbl2"
              cls
clus           [,1] [,2]
  1P MUTATED      6   10
  1P WILD-TYPE  115   63
        clus
vv       1P MUTATED 1P WILD-TYPE
  CLUS_1          6          115
  CLUS_2         10           63
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P MUTATED       49      7      5      6
  1P WILD-TYPE    125     79    110    124
D1V7, multiclass
        clus
vv       1P MUTATED 1P WILD-TYPE
  CLUS_1         49          125
  CLUS_2          7           79
  CLUS_3          5          110
  CLUS_4          6          124
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  1P MUTATED       54      4      9
  1P WILD-TYPE    185     80    173
D1V8, multiclass
        clus
vv       1P MUTATED 1P WILD-TYPE
  CLUS_1         54          185
  CLUS_2          4           80
  CLUS_3          9          173
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P MUTATED       40      4      4      8     10
  1P WILD-TYPE    109    134     45     45    106
D1V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  1P MUTATED        1      6     59
  1P WILD-TYPE     12    208    219
D1V10, multiclass
        clus
vv       1P MUTATED 1P WILD-TYPE
  CLUS_1          1           12
  CLUS_2          6          208
  CLUS_3         59          219
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  1P MUTATED       42      9      7
  1P WILD-TYPE    134     81    109
D1V11, multiclass
        clus
vv       1P MUTATED 1P WILD-TYPE
  CLUS_1         42          134
  CLUS_2          9           81
  CLUS_3          7          109
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P MUTATED       14     31      9      4
  1P WILD-TYPE     87     69    137     31
D1V12, multiclass
        clus
vv       1P MUTATED 1P WILD-TYPE
  CLUS_1         14           87
  CLUS_2         31           69
  CLUS_3          9          137
  CLUS_4          4           31

Clustering(2) Variable = 1Q MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q MUTATED       10      7      5      2
  1Q WILD-TYPE      4     10      7      8
D2V1, multiclass
        clus
vv       1Q MUTATED 1Q WILD-TYPE
  CLUS_1         10            4
  CLUS_2          7           10
  CLUS_3          5            7
  CLUS_4          2            8
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  1Q MUTATED       12      6      6
  1Q WILD-TYPE      7     13      9
D2V2, multiclass
        clus
vv       1Q MUTATED 1Q WILD-TYPE
  CLUS_1         12            7
  CLUS_2          6           13
  CLUS_3          6            9
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1Q MUTATED       90     17     60     11      9      1
  1Q WILD-TYPE    210      7     92     11      6      0
D2V3, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  1Q MUTATED       60     21     56
  1Q WILD-TYPE     92     67    104
D2V4, multiclass
        clus
vv       1Q MUTATED 1Q WILD-TYPE
  CLUS_1         60           92
  CLUS_2         21           67
  CLUS_3         56          104
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1Q MUTATED       11     11     16      8     17      8
  1Q WILD-TYPE     30     26     23      4     24     16
D2V5, multiclass
D2V6, binary
              cls
clus            0  1
  1Q MUTATED   51 20
  1Q WILD-TYPE 70 53
[1] "tbl2"
              cls
clus           [,1] [,2]
  1Q MUTATED     51   20
  1Q WILD-TYPE   70   53
        clus
vv       1Q MUTATED 1Q WILD-TYPE
  CLUS_1         51           70
  CLUS_2         20           53
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q MUTATED       70     36     46     33
  1Q WILD-TYPE    104     50     69     97
D2V7, multiclass
        clus
vv       1Q MUTATED 1Q WILD-TYPE
  CLUS_1         70          104
  CLUS_2         36           50
  CLUS_3         46           69
  CLUS_4         33           97
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  1Q MUTATED       89     38     58
  1Q WILD-TYPE    150     46    124
D2V8, multiclass
        clus
vv       1Q MUTATED 1Q WILD-TYPE
  CLUS_1         89          150
  CLUS_2         38           46
  CLUS_3         58          124
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q MUTATED       58     39     17     28     45
  1Q WILD-TYPE     91     99     32     25     71
D2V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  1Q MUTATED        3     71    113
  1Q WILD-TYPE     10    143    165
D2V10, multiclass
        clus
vv       1Q MUTATED 1Q WILD-TYPE
  CLUS_1          3           10
  CLUS_2         71          143
  CLUS_3        113          165
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  1Q MUTATED       63     35     38
  1Q WILD-TYPE    113     55     78
D2V11, multiclass
        clus
vv       1Q MUTATED 1Q WILD-TYPE
  CLUS_1         63          113
  CLUS_2         35           55
  CLUS_3         38           78
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q MUTATED       38     45     47      6
  1Q WILD-TYPE     63     55     99     29
D2V12, multiclass
        clus
vv       1Q MUTATED 1Q WILD-TYPE
  CLUS_1         38           63
  CLUS_2         45           55
  CLUS_3         47           99
  CLUS_4          6           29

Clustering(3) Variable = 2P MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P MUTATED        1      3      2      1
  2P WILD-TYPE     13     14     10      9
D3V1, multiclass
        clus
vv       2P MUTATED 2P WILD-TYPE
  CLUS_1          1           13
  CLUS_2          3           14
  CLUS_3          2           10
  CLUS_4          1            9
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  2P MUTATED        2      2      3
  2P WILD-TYPE     17     17     12
D3V2, multiclass
        clus
vv       2P MUTATED 2P WILD-TYPE
  CLUS_1          2           17
  CLUS_2          2           17
  CLUS_3          3           12
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2P MUTATED        8     21     60      4      5      0
  2P WILD-TYPE    292      3     92     18     10      1
D3V3, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  2P MUTATED       52     13     12
  2P WILD-TYPE    100     75    148
D3V4, multiclass
        clus
vv       2P MUTATED 2P WILD-TYPE
  CLUS_1         52          100
  CLUS_2         13           75
  CLUS_3         12          148
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2P MUTATED        5      8      1      1      6      7
  2P WILD-TYPE     36     29     38     11     35     17
D3V5, multiclass
D3V6, binary
              cls
clus             0   1
  2P MUTATED    16  12
  2P WILD-TYPE 105  61
[1] "tbl2"
              cls
clus           [,1] [,2]
  2P MUTATED     16   12
  2P WILD-TYPE  105   61
        clus
vv       2P MUTATED 2P WILD-TYPE
  CLUS_1         16          105
  CLUS_2         12           61
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P MUTATED       62     11     13     10
  2P WILD-TYPE    112     75    102    120
D3V7, multiclass
        clus
vv       2P MUTATED 2P WILD-TYPE
  CLUS_1         62          112
  CLUS_2         11           75
  CLUS_3         13          102
  CLUS_4         10          120
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  2P MUTATED       73      8     15
  2P WILD-TYPE    166     76    167
D3V8, multiclass
        clus
vv       2P MUTATED 2P WILD-TYPE
  CLUS_1         73          166
  CLUS_2          8           76
  CLUS_3         15          167
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P MUTATED       49     11     13     11     13
  2P WILD-TYPE    100    127     36     42    103
D3V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  2P MUTATED        0     20     77
  2P WILD-TYPE     13    194    201
D3V10, multiclass
        clus
vv       2P MUTATED 2P WILD-TYPE
  CLUS_1          0           13
  CLUS_2         20          194
  CLUS_3         77          201
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  2P MUTATED       45     20      9
  2P WILD-TYPE    131     70    107
D3V11, multiclass
        clus
vv       2P MUTATED 2P WILD-TYPE
  CLUS_1         45          131
  CLUS_2         20           70
  CLUS_3          9          107
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P MUTATED       26     30     12      6
  2P WILD-TYPE     75     70    134     29
D3V12, multiclass
        clus
vv       2P MUTATED 2P WILD-TYPE
  CLUS_1         26           75
  CLUS_2         30           70
  CLUS_3         12          134
  CLUS_4          6           29

Clustering(4) Variable = 2Q MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q MUTATED        0      2      2      0
  2Q WILD-TYPE     14     15     10     10
D4V1, multiclass
        clus
vv       2Q MUTATED 2Q WILD-TYPE
  CLUS_1          0           14
  CLUS_2          2           15
  CLUS_3          2           10
  CLUS_4          0           10
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  2Q MUTATED        1      1      2
  2Q WILD-TYPE     18     18     13
D4V2, multiclass
        clus
vv       2Q MUTATED 2Q WILD-TYPE
  CLUS_1          1           18
  CLUS_2          1           18
  CLUS_3          2           13
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2Q MUTATED        5     19     55      4      4      0
  2Q WILD-TYPE    295      5     97     18     11      1
D4V3, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  2Q MUTATED       47     13     12
  2Q WILD-TYPE    105     75    148
D4V4, multiclass
        clus
vv       2Q MUTATED 2Q WILD-TYPE
  CLUS_1         47          105
  CLUS_2         13           75
  CLUS_3         12          148
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2Q MUTATED        4      6      1      1      4      7
  2Q WILD-TYPE     37     31     38     11     37     17
D4V5, multiclass
D4V6, binary
              cls
clus             0   1
  2Q MUTATED    14   9
  2Q WILD-TYPE 107  64
[1] "tbl2"
              cls
clus           [,1] [,2]
  2Q MUTATED     14    9
  2Q WILD-TYPE  107   64
        clus
vv       2Q MUTATED 2Q WILD-TYPE
  CLUS_1         14          107
  CLUS_2          9           64
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q MUTATED       56     10     10      9
  2Q WILD-TYPE    118     76    105    121
D4V7, multiclass
        clus
vv       2Q MUTATED 2Q WILD-TYPE
  CLUS_1         56          118
  CLUS_2         10           76
  CLUS_3         10          105
  CLUS_4          9          121
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  2Q MUTATED       66      6     13
  2Q WILD-TYPE    173     78    169
D4V8, multiclass
        clus
vv       2Q MUTATED 2Q WILD-TYPE
  CLUS_1         66          173
  CLUS_2          6           78
  CLUS_3         13          169
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q MUTATED       47      9     11      9     11
  2Q WILD-TYPE    102    129     38     44    105
D4V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  2Q MUTATED        0     15     72
  2Q WILD-TYPE     13    199    206
D4V10, multiclass
        clus
vv       2Q MUTATED 2Q WILD-TYPE
  CLUS_1          0           13
  CLUS_2         15          199
  CLUS_3         72          206
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  2Q MUTATED       42     19      8
  2Q WILD-TYPE    134     71    108
D4V11, multiclass
        clus
vv       2Q MUTATED 2Q WILD-TYPE
  CLUS_1         42          134
  CLUS_2         19           71
  CLUS_3          8          108
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q MUTATED       26     27     10      6
  2Q WILD-TYPE     75     73    136     29
D4V12, multiclass
        clus
vv       2Q MUTATED 2Q WILD-TYPE
  CLUS_1         26           75
  CLUS_2         27           73
  CLUS_3         10          136
  CLUS_4          6           29

Clustering(5) Variable = 3P MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P MUTATED        0      5      1      0
  3P WILD-TYPE     14     12     11     10
D5V1, multiclass
        clus
vv       3P MUTATED 3P WILD-TYPE
  CLUS_1          0           14
  CLUS_2          5           12
  CLUS_3          1           11
  CLUS_4          0           10
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  3P MUTATED        1      1      4
  3P WILD-TYPE     18     18     11
D5V2, multiclass
        clus
vv       3P MUTATED 3P WILD-TYPE
  CLUS_1          1           18
  CLUS_2          1           18
  CLUS_3          4           11
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3P MUTATED        2      6     67      7      9      0
  3P WILD-TYPE    298     18     85     15      6      1
D5V3, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  3P MUTATED       52     14     10
  3P WILD-TYPE    100     74    150
D5V4, multiclass
        clus
vv       3P MUTATED 3P WILD-TYPE
  CLUS_1         52          100
  CLUS_2         14           74
  CLUS_3         10          150
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3P MUTATED        5      9      3      1      1      2
  3P WILD-TYPE     36     28     36     11     40     22
D5V5, multiclass
D5V6, binary
              cls
clus             0   1
  3P MUTATED    10  11
  3P WILD-TYPE 111  62
[1] "tbl2"
              cls
clus           [,1] [,2]
  3P MUTATED     10   11
  3P WILD-TYPE  111   62
        clus
vv       3P MUTATED 3P WILD-TYPE
  CLUS_1         10          111
  CLUS_2         11           62
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P MUTATED       67      8      4     10
  3P WILD-TYPE    107     78    111    120
D5V7, multiclass
        clus
vv       3P MUTATED 3P WILD-TYPE
  CLUS_1         67          107
  CLUS_2          8           78
  CLUS_3          4          111
  CLUS_4         10          120
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  3P MUTATED       75      4     10
  3P WILD-TYPE    164     80    172
D5V8, multiclass
        clus
vv       3P MUTATED 3P WILD-TYPE
  CLUS_1         75          164
  CLUS_2          4           80
  CLUS_3         10          172
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P MUTATED       51     10      9      6     13
  3P WILD-TYPE     98    128     40     47    103
D5V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  3P MUTATED        5     14     70
  3P WILD-TYPE      8    200    208
D5V10, multiclass
        clus
vv       3P MUTATED 3P WILD-TYPE
  CLUS_1          5            8
  CLUS_2         14          200
  CLUS_3         70          208
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  3P MUTATED       49     14     10
  3P WILD-TYPE    127     76    106
D5V11, multiclass
        clus
vv       3P MUTATED 3P WILD-TYPE
  CLUS_1         49          127
  CLUS_2         14           76
  CLUS_3         10          106
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P MUTATED       18     38     12      5
  3P WILD-TYPE     83     62    134     30
D5V12, multiclass
        clus
vv       3P MUTATED 3P WILD-TYPE
  CLUS_1         18           83
  CLUS_2         38           62
  CLUS_3         12          134
  CLUS_4          5           30

Clustering(6) Variable = 3Q MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q MUTATED        1      7      1      0
  3Q WILD-TYPE     13     10     11     10
D6V1, multiclass
        clus
vv       3Q MUTATED 3Q WILD-TYPE
  CLUS_1          1           13
  CLUS_2          7           10
  CLUS_3          1           11
  CLUS_4          0           10
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  3Q MUTATED        2      1      6
  3Q WILD-TYPE     17     18      9
D6V2, multiclass
        clus
vv       3Q MUTATED 3Q WILD-TYPE
  CLUS_1          2           17
  CLUS_2          1           18
  CLUS_3          6            9
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3Q MUTATED        5      6     77      7     10      0
  3Q WILD-TYPE    295     18     75     15      5      1
D6V3, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  3Q MUTATED       65     14     10
  3Q WILD-TYPE     87     74    150
D6V4, multiclass
        clus
vv       3Q MUTATED 3Q WILD-TYPE
  CLUS_1         65           87
  CLUS_2         14           74
  CLUS_3         10          150
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3Q MUTATED        7      8      2      1      0      2
  3Q WILD-TYPE     34     29     37     11     41     22
D6V5, multiclass
D6V6, binary
              cls
clus             0   1
  3Q MUTATED     7  13
  3Q WILD-TYPE 114  60
[1] "tbl2"
              cls
clus           [,1] [,2]
  3Q MUTATED      7   13
  3Q WILD-TYPE  114   60
        clus
vv       3Q MUTATED 3Q WILD-TYPE
  CLUS_1          7          114
  CLUS_2         13           60
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q MUTATED       76     14      2     11
  3Q WILD-TYPE     98     72    113    119
D6V7, multiclass
        clus
vv       3Q MUTATED 3Q WILD-TYPE
  CLUS_1         76           98
  CLUS_2         14           72
  CLUS_3          2          113
  CLUS_4         11          119
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  3Q MUTATED       89      3     11
  3Q WILD-TYPE    150     81    171
D6V8, multiclass
        clus
vv       3Q MUTATED 3Q WILD-TYPE
  CLUS_1         89          150
  CLUS_2          3           81
  CLUS_3         11          171
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q MUTATED       57     12     14      3     17
  3Q WILD-TYPE     92    126     35     50     99
D6V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  3Q MUTATED        4     14     85
  3Q WILD-TYPE      9    200    193
D6V10, multiclass
        clus
vv       3Q MUTATED 3Q WILD-TYPE
  CLUS_1          4            9
  CLUS_2         14          200
  CLUS_3         85          193
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  3Q MUTATED       55     22     10
  3Q WILD-TYPE    121     68    106
D6V11, multiclass
        clus
vv       3Q MUTATED 3Q WILD-TYPE
  CLUS_1         55          121
  CLUS_2         22           68
  CLUS_3         10          106
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q MUTATED       27     44     12      4
  3Q WILD-TYPE     74     56    134     31
D6V12, multiclass
        clus
vv       3Q MUTATED 3Q WILD-TYPE
  CLUS_1         27           74
  CLUS_2         44           56
  CLUS_3         12          134
  CLUS_4          4           31

Clustering(7) Variable = 4P MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P MUTATED        2      7      0      0
  4P WILD-TYPE     12     10     12     10
D7V1, multiclass
        clus
vv       4P MUTATED 4P WILD-TYPE
  CLUS_1          2           12
  CLUS_2          7           10
  CLUS_3          0           12
  CLUS_4          0           10
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  4P MUTATED        2      0      7
  4P WILD-TYPE     17     19      8
D7V2, multiclass
        clus
vv       4P MUTATED 4P WILD-TYPE
  CLUS_1          2           17
  CLUS_2          0           19
  CLUS_3          7            8
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4P MUTATED        4      9     91      5      1      0
  4P WILD-TYPE    296     15     61     17     14      1
D7V3, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  4P MUTATED       67     20      8
  4P WILD-TYPE     85     68    152
D7V4, multiclass
        clus
vv       4P MUTATED 4P WILD-TYPE
  CLUS_1         67           85
  CLUS_2         20           68
  CLUS_3          8          152
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4P MUTATED        7     10      0      1      1      7
  4P WILD-TYPE     34     27     39     11     40     17
D7V5, multiclass
D7V6, binary
              cls
clus             0   1
  4P MUTATED    11  15
  4P WILD-TYPE 110  58
[1] "tbl2"
              cls
clus           [,1] [,2]
  4P MUTATED     11   15
  4P WILD-TYPE  110   58
        clus
vv       4P MUTATED 4P WILD-TYPE
  CLUS_1         11          110
  CLUS_2         15           58
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P MUTATED       87      9      7      7
  4P WILD-TYPE     87     77    108    123
D7V7, multiclass
        clus
vv       4P MUTATED 4P WILD-TYPE
  CLUS_1         87           87
  CLUS_2          9           77
  CLUS_3          7          108
  CLUS_4          7          123
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  4P MUTATED       97      2     11
  4P WILD-TYPE    142     82    171
D7V8, multiclass
        clus
vv       4P MUTATED 4P WILD-TYPE
  CLUS_1         97          142
  CLUS_2          2           82
  CLUS_3         11          171
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P MUTATED       72      8     12      8      8
  4P WILD-TYPE     77    130     37     45    108
D7V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  4P MUTATED        2     10     96
  4P WILD-TYPE     11    204    182
D7V10, multiclass
        clus
vv       4P MUTATED 4P WILD-TYPE
  CLUS_1          2           11
  CLUS_2         10          204
  CLUS_3         96          182
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  4P MUTATED       62     23     10
  4P WILD-TYPE    114     67    106
D7V11, multiclass
        clus
vv       4P MUTATED 4P WILD-TYPE
  CLUS_1         62          114
  CLUS_2         23           67
  CLUS_3         10          106
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P MUTATED       32     43     12      8
  4P WILD-TYPE     69     57    134     27
D7V12, multiclass
        clus
vv       4P MUTATED 4P WILD-TYPE
  CLUS_1         32           69
  CLUS_2         43           57
  CLUS_3         12          134
  CLUS_4          8           27

Clustering(8) Variable = 4Q MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q MUTATED        2      4      0      0
  4Q WILD-TYPE     12     13     12     10
D8V1, multiclass
        clus
vv       4Q MUTATED 4Q WILD-TYPE
  CLUS_1          2           12
  CLUS_2          4           13
  CLUS_3          0           12
  CLUS_4          0           10
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  4Q MUTATED        2      0      4
  4Q WILD-TYPE     17     19     11
D8V2, multiclass
        clus
vv       4Q MUTATED 4Q WILD-TYPE
  CLUS_1          2           17
  CLUS_2          0           19
  CLUS_3          4           11
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4Q MUTATED        3      8     88      5      1      0
  4Q WILD-TYPE    297     16     64     17     14      1
D8V3, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  4Q MUTATED       66     19      7
  4Q WILD-TYPE     86     69    153
D8V4, multiclass
        clus
vv       4Q MUTATED 4Q WILD-TYPE
  CLUS_1         66           86
  CLUS_2         19           69
  CLUS_3          7          153
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4Q MUTATED        6      8      1      1      1      6
  4Q WILD-TYPE     35     29     38     11     40     18
D8V5, multiclass
D8V6, binary
              cls
clus             0   1
  4Q MUTATED    11  12
  4Q WILD-TYPE 110  61
[1] "tbl2"
              cls
clus           [,1] [,2]
  4Q MUTATED     11   12
  4Q WILD-TYPE  110   61
        clus
vv       4Q MUTATED 4Q WILD-TYPE
  CLUS_1         11          110
  CLUS_2         12           61
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q MUTATED       85      7      6      7
  4Q WILD-TYPE     89     79    109    123
D8V7, multiclass
        clus
vv       4Q MUTATED 4Q WILD-TYPE
  CLUS_1         85           89
  CLUS_2          7           79
  CLUS_3          6          109
  CLUS_4          7          123
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  4Q MUTATED       92      2     11
  4Q WILD-TYPE    147     82    171
D8V8, multiclass
        clus
vv       4Q MUTATED 4Q WILD-TYPE
  CLUS_1         92          147
  CLUS_2          2           82
  CLUS_3         11          171
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q MUTATED       64      9     14      8      8
  4Q WILD-TYPE     85    129     35     45    108
D8V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  4Q MUTATED        2      9     92
  4Q WILD-TYPE     11    205    186
D8V10, multiclass
        clus
vv       4Q MUTATED 4Q WILD-TYPE
  CLUS_1          2           11
  CLUS_2          9          205
  CLUS_3         92          186
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  4Q MUTATED       58     25      9
  4Q WILD-TYPE    118     65    107
D8V11, multiclass
        clus
vv       4Q MUTATED 4Q WILD-TYPE
  CLUS_1         58          118
  CLUS_2         25           65
  CLUS_3          9          107
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q MUTATED       34     39     11      8
  4Q WILD-TYPE     67     61    135     27
D8V12, multiclass
        clus
vv       4Q MUTATED 4Q WILD-TYPE
  CLUS_1         34           67
  CLUS_2         39           61
  CLUS_3         11          135
  CLUS_4          8           27

Clustering(9) Variable = 5P MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P MUTATED        2      6      1      0
  5P WILD-TYPE     12     11     11     10
D9V1, multiclass
        clus
vv       5P MUTATED 5P WILD-TYPE
  CLUS_1          2           12
  CLUS_2          6           11
  CLUS_3          1           11
  CLUS_4          0           10
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  5P MUTATED        3      0      6
  5P WILD-TYPE     16     19      9
D9V2, multiclass
        clus
vv       5P MUTATED 5P WILD-TYPE
  CLUS_1          3           16
  CLUS_2          0           19
  CLUS_3          6            9
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5P MUTATED        3      8     83      8      1      0
  5P WILD-TYPE    297     16     69     14     14      1
D9V3, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  5P MUTATED       67     11      8
  5P WILD-TYPE     85     77    152
D9V4, multiclass
        clus
vv       5P MUTATED 5P WILD-TYPE
  CLUS_1         67           85
  CLUS_2         11           77
  CLUS_3          8          152
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5P MUTATED        6      9      0      1      4      7
  5P WILD-TYPE     35     28     39     11     37     17
D9V5, multiclass
D9V6, binary
              cls
clus             0   1
  5P MUTATED    13  14
  5P WILD-TYPE 108  59
[1] "tbl2"
              cls
clus           [,1] [,2]
  5P MUTATED     13   14
  5P WILD-TYPE  108   59
        clus
vv       5P MUTATED 5P WILD-TYPE
  CLUS_1         13          108
  CLUS_2         14           59
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P MUTATED       78      9     11      5
  5P WILD-TYPE     96     77    104    125
D9V7, multiclass
        clus
vv       5P MUTATED 5P WILD-TYPE
  CLUS_1         78           96
  CLUS_2          9           77
  CLUS_3         11          104
  CLUS_4          5          125
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  5P MUTATED       90      3     10
  5P WILD-TYPE    149     81    172
D9V8, multiclass
        clus
vv       5P MUTATED 5P WILD-TYPE
  CLUS_1         90          149
  CLUS_2          3           81
  CLUS_3         10          172
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P MUTATED       65      6      9     10     12
  5P WILD-TYPE     84    132     40     43    104
D9V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  5P MUTATED        3     11     88
  5P WILD-TYPE     10    203    190
D9V10, multiclass
        clus
vv       5P MUTATED 5P WILD-TYPE
  CLUS_1          3           10
  CLUS_2         11          203
  CLUS_3         88          190
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  5P MUTATED       60     16      7
  5P WILD-TYPE    116     74    109
D9V11, multiclass
        clus
vv       5P MUTATED 5P WILD-TYPE
  CLUS_1         60          116
  CLUS_2         16           74
  CLUS_3          7          109
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P MUTATED       26     44      8      5
  5P WILD-TYPE     75     56    138     30
D9V12, multiclass
        clus
vv       5P MUTATED 5P WILD-TYPE
  CLUS_1         26           75
  CLUS_2         44           56
  CLUS_3          8          138
  CLUS_4          5           30

Clustering(10) Variable = 5Q MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q MUTATED        1      6      0      0
  5Q WILD-TYPE     13     11     12     10
D10V1, multiclass
        clus
vv       5Q MUTATED 5Q WILD-TYPE
  CLUS_1          1           13
  CLUS_2          6           11
  CLUS_3          0           12
  CLUS_4          0           10
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  5Q MUTATED        1      0      6
  5Q WILD-TYPE     18     19      9
D10V2, multiclass
        clus
vv       5Q MUTATED 5Q WILD-TYPE
  CLUS_1          1           18
  CLUS_2          0           19
  CLUS_3          6            9
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5Q MUTATED        1      6     75      8      1      0
  5Q WILD-TYPE    299     18     77     14     14      1
D10V3, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  5Q MUTATED       61     10      7
  5Q WILD-TYPE     91     78    153
D10V4, multiclass
        clus
vv       5Q MUTATED 5Q WILD-TYPE
  CLUS_1         61           91
  CLUS_2         10           78
  CLUS_3          7          153
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5Q MUTATED        5      9      1      0      2      6
  5Q WILD-TYPE     36     28     38     12     39     18
D10V5, multiclass
D10V6, binary
              cls
clus             0   1
  5Q MUTATED    10  13
  5Q WILD-TYPE 111  60
[1] "tbl2"
              cls
clus           [,1] [,2]
  5Q MUTATED     10   13
  5Q WILD-TYPE  111   60
        clus
vv       5Q MUTATED 5Q WILD-TYPE
  CLUS_1         10          111
  CLUS_2         13           60
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q MUTATED       70      8      7      6
  5Q WILD-TYPE    104     78    108    124
D10V7, multiclass
        clus
vv       5Q MUTATED 5Q WILD-TYPE
  CLUS_1         70          104
  CLUS_2          8           78
  CLUS_3          7          108
  CLUS_4          6          124
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  5Q MUTATED       80      2      9
  5Q WILD-TYPE    159     82    173
D10V8, multiclass
        clus
vv       5Q MUTATED 5Q WILD-TYPE
  CLUS_1         80          159
  CLUS_2          2           82
  CLUS_3          9          173
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q MUTATED       55      5     12      9      9
  5Q WILD-TYPE     94    133     37     44    107
D10V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  5Q MUTATED        1      9     80
  5Q WILD-TYPE     12    205    198
D10V10, multiclass
        clus
vv       5Q MUTATED 5Q WILD-TYPE
  CLUS_1          1           12
  CLUS_2          9          205
  CLUS_3         80          198
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  5Q MUTATED       52     16      6
  5Q WILD-TYPE    124     74    110
D10V11, multiclass
        clus
vv       5Q MUTATED 5Q WILD-TYPE
  CLUS_1         52          124
  CLUS_2         16           74
  CLUS_3          6          110
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q MUTATED       24     37      6      7
  5Q WILD-TYPE     77     63    140     28
D10V12, multiclass
        clus
vv       5Q MUTATED 5Q WILD-TYPE
  CLUS_1         24           77
  CLUS_2         37           63
  CLUS_3          6          140
  CLUS_4          7           28

Clustering(11) Variable = 6P MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P MUTATED        1      6      2      0
  6P WILD-TYPE     13     11     10     10
D11V1, multiclass
        clus
vv       6P MUTATED 6P WILD-TYPE
  CLUS_1          1           13
  CLUS_2          6           11
  CLUS_3          2           10
  CLUS_4          0           10
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  6P MUTATED        1      2      6
  6P WILD-TYPE     18     17      9
D11V2, multiclass
        clus
vv       6P MUTATED 6P WILD-TYPE
  CLUS_1          1           18
  CLUS_2          2           17
  CLUS_3          6            9
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6P MUTATED        5      5     69      2      9      0
  6P WILD-TYPE    295     19     83     20      6      1
D11V3, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  6P MUTATED       50     16     10
  6P WILD-TYPE    102     72    150
D11V4, multiclass
        clus
vv       6P MUTATED 6P WILD-TYPE
  CLUS_1         50          102
  CLUS_2         16           72
  CLUS_3         10          150
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6P MUTATED        5      9      2      1      1      2
  6P WILD-TYPE     36     28     37     11     40     22
D11V5, multiclass
D11V6, binary
              cls
clus             0   1
  6P MUTATED     8  12
  6P WILD-TYPE 113  61
[1] "tbl2"
              cls
clus           [,1] [,2]
  6P MUTATED      8   12
  6P WILD-TYPE  113   61
        clus
vv       6P MUTATED 6P WILD-TYPE
  CLUS_1          8          113
  CLUS_2         12           61
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P MUTATED       63      6      6     15
  6P WILD-TYPE    111     80    109    115
D11V7, multiclass
        clus
vv       6P MUTATED 6P WILD-TYPE
  CLUS_1         63          111
  CLUS_2          6           80
  CLUS_3          6          109
  CLUS_4         15          115
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  6P MUTATED       71      3     16
  6P WILD-TYPE    168     81    166
D11V8, multiclass
        clus
vv       6P MUTATED 6P WILD-TYPE
  CLUS_1         71          168
  CLUS_2          3           81
  CLUS_3         16          166
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P MUTATED       49     12     12      6      9
  6P WILD-TYPE    100    126     37     47    107
D11V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  6P MUTATED        2     13     73
  6P WILD-TYPE     11    201    205
D11V10, multiclass
        clus
vv       6P MUTATED 6P WILD-TYPE
  CLUS_1          2           11
  CLUS_2         13          201
  CLUS_3         73          205
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  6P MUTATED       47     15     13
  6P WILD-TYPE    129     75    103
D11V11, multiclass
        clus
vv       6P MUTATED 6P WILD-TYPE
  CLUS_1         47          129
  CLUS_2         15           75
  CLUS_3         13          103
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P MUTATED       22     31     15      7
  6P WILD-TYPE     79     69    131     28
D11V12, multiclass
        clus
vv       6P MUTATED 6P WILD-TYPE
  CLUS_1         22           79
  CLUS_2         31           69
  CLUS_3         15          131
  CLUS_4          7           28

Clustering(12) Variable = 6Q MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q MUTATED        1      6      2      0
  6Q WILD-TYPE     13     11     10     10
D12V1, multiclass
        clus
vv       6Q MUTATED 6Q WILD-TYPE
  CLUS_1          1           13
  CLUS_2          6           11
  CLUS_3          2           10
  CLUS_4          0           10
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  6Q MUTATED        1      2      6
  6Q WILD-TYPE     18     17      9
D12V2, multiclass
        clus
vv       6Q MUTATED 6Q WILD-TYPE
  CLUS_1          1           18
  CLUS_2          2           17
  CLUS_3          6            9
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6Q MUTATED        5      5     63      2      8      0
  6Q WILD-TYPE    295     19     89     20      7      1
D12V3, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  6Q MUTATED       45     13     11
  6Q WILD-TYPE    107     75    149
D12V4, multiclass
        clus
vv       6Q MUTATED 6Q WILD-TYPE
  CLUS_1         45          107
  CLUS_2         13           75
  CLUS_3         11          149
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6Q MUTATED        5      9      1      1      1      3
  6Q WILD-TYPE     36     28     38     11     40     21
D12V5, multiclass
D12V6, binary
              cls
clus             0   1
  6Q MUTATED     8  12
  6Q WILD-TYPE 113  61
[1] "tbl2"
              cls
clus           [,1] [,2]
  6Q MUTATED      8   12
  6Q WILD-TYPE  113   61
        clus
vv       6Q MUTATED 6Q WILD-TYPE
  CLUS_1          8          113
  CLUS_2         12           61
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q MUTATED       56      6      6     15
  6Q WILD-TYPE    118     80    109    115
D12V7, multiclass
        clus
vv       6Q MUTATED 6Q WILD-TYPE
  CLUS_1         56          118
  CLUS_2          6           80
  CLUS_3          6          109
  CLUS_4         15          115
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  6Q MUTATED       64      3     16
  6Q WILD-TYPE    175     81    166
D12V8, multiclass
        clus
vv       6Q MUTATED 6Q WILD-TYPE
  CLUS_1         64          175
  CLUS_2          3           81
  CLUS_3         16          166
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q MUTATED       42     12     12      7      8
  6Q WILD-TYPE    107    126     37     46    108
D12V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  6Q MUTATED        2     13     66
  6Q WILD-TYPE     11    201    212
D12V10, multiclass
        clus
vv       6Q MUTATED 6Q WILD-TYPE
  CLUS_1          2           11
  CLUS_2         13          201
  CLUS_3         66          212
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  6Q MUTATED       39     16     13
  6Q WILD-TYPE    137     74    103
D12V11, multiclass
        clus
vv       6Q MUTATED 6Q WILD-TYPE
  CLUS_1         39          137
  CLUS_2         16           74
  CLUS_3         13          103
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q MUTATED       21     26     14      7
  6Q WILD-TYPE     80     74    132     28
D12V12, multiclass
        clus
vv       6Q MUTATED 6Q WILD-TYPE
  CLUS_1         21           80
  CLUS_2         26           74
  CLUS_3         14          132
  CLUS_4          7           28

Clustering(13) Variable = 7P MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P MUTATED        1      7      2      1
  7P WILD-TYPE     13     10     10      9
D13V1, multiclass
        clus
vv       7P MUTATED 7P WILD-TYPE
  CLUS_1          1           13
  CLUS_2          7           10
  CLUS_3          2           10
  CLUS_4          1            9
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  7P MUTATED        2      3      6
  7P WILD-TYPE     17     16      9
D13V2, multiclass
        clus
vv       7P MUTATED 7P WILD-TYPE
  CLUS_1          2           17
  CLUS_2          3           16
  CLUS_3          6            9
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7P MUTATED       11     15     64      8      7      0
  7P WILD-TYPE    289      9     88     14      8      1
D13V3, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  7P MUTATED       49     13     22
  7P WILD-TYPE    103     75    138
D13V4, multiclass
        clus
vv       7P MUTATED 7P WILD-TYPE
  CLUS_1         49          103
  CLUS_2         13           75
  CLUS_3         22          138
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7P MUTATED        6      9      3      2      5      1
  7P WILD-TYPE     35     28     36     10     36     23
D13V5, multiclass
D13V6, binary
              cls
clus             0   1
  7P MUTATED    15  11
  7P WILD-TYPE 106  62
[1] "tbl2"
              cls
clus           [,1] [,2]
  7P MUTATED     15   11
  7P WILD-TYPE  106   62
        clus
vv       7P MUTATED 7P WILD-TYPE
  CLUS_1         15          106
  CLUS_2         11           62
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P MUTATED       67      6     15     15
  7P WILD-TYPE    107     80    100    115
D13V7, multiclass
        clus
vv       7P MUTATED 7P WILD-TYPE
  CLUS_1         67          107
  CLUS_2          6           80
  CLUS_3         15          100
  CLUS_4         15          115
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  7P MUTATED       74      7     22
  7P WILD-TYPE    165     77    160
D13V8, multiclass
        clus
vv       7P MUTATED 7P WILD-TYPE
  CLUS_1         74          165
  CLUS_2          7           77
  CLUS_3         22          160
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P MUTATED       52     16     11     11     14
  7P WILD-TYPE     97    122     38     42    102
D13V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  7P MUTATED        3     24     77
  7P WILD-TYPE     10    190    201
D13V10, multiclass
        clus
vv       7P MUTATED 7P WILD-TYPE
  CLUS_1          3           10
  CLUS_2         24          190
  CLUS_3         77          201
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  7P MUTATED       45     22     15
  7P WILD-TYPE    131     68    101
D13V11, multiclass
        clus
vv       7P MUTATED 7P WILD-TYPE
  CLUS_1         45          131
  CLUS_2         22           68
  CLUS_3         15          101
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P MUTATED       24     30     23      5
  7P WILD-TYPE     77     70    123     30
D13V12, multiclass
        clus
vv       7P MUTATED 7P WILD-TYPE
  CLUS_1         24           77
  CLUS_2         30           70
  CLUS_3         23          123
  CLUS_4          5           30

Clustering(14) Variable = 7Q MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q MUTATED        1      4      2      1
  7Q WILD-TYPE     13     13     10      9
D14V1, multiclass
        clus
vv       7Q MUTATED 7Q WILD-TYPE
  CLUS_1          1           13
  CLUS_2          4           13
  CLUS_3          2           10
  CLUS_4          1            9
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  7Q MUTATED        2      3      3
  7Q WILD-TYPE     17     16     12
D14V2, multiclass
        clus
vv       7Q MUTATED 7Q WILD-TYPE
  CLUS_1          2           17
  CLUS_2          3           16
  CLUS_3          3           12
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7Q MUTATED       11     16     61      6      7      0
  7Q WILD-TYPE    289      8     91     16      8      1
D14V3, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  7Q MUTATED       50     11     21
  7Q WILD-TYPE    102     77    139
D14V4, multiclass
        clus
vv       7Q MUTATED 7Q WILD-TYPE
  CLUS_1         50          102
  CLUS_2         11           77
  CLUS_3         21          139
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7Q MUTATED        6      7      3      1      5      3
  7Q WILD-TYPE     35     30     36     11     36     21
D14V5, multiclass
D14V6, binary
              cls
clus             0   1
  7Q MUTATED    13  12
  7Q WILD-TYPE 108  61
[1] "tbl2"
              cls
clus           [,1] [,2]
  7Q MUTATED     13   12
  7Q WILD-TYPE  108   61
        clus
vv       7Q MUTATED 7Q WILD-TYPE
  CLUS_1         13          108
  CLUS_2         12           61
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q MUTATED       66      6     13     14
  7Q WILD-TYPE    108     80    102    116
D14V7, multiclass
        clus
vv       7Q MUTATED 7Q WILD-TYPE
  CLUS_1         66          108
  CLUS_2          6           80
  CLUS_3         13          102
  CLUS_4         14          116
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  7Q MUTATED       71      7     21
  7Q WILD-TYPE    168     77    161
D14V8, multiclass
        clus
vv       7Q MUTATED 7Q WILD-TYPE
  CLUS_1         71          168
  CLUS_2          7           77
  CLUS_3         21          161
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q MUTATED       53     14      9     11     14
  7Q WILD-TYPE     96    124     40     42    102
D14V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  7Q MUTATED        1     22     78
  7Q WILD-TYPE     12    192    200
D14V10, multiclass
        clus
vv       7Q MUTATED 7Q WILD-TYPE
  CLUS_1          1           12
  CLUS_2         22          192
  CLUS_3         78          200
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  7Q MUTATED       46     21     13
  7Q WILD-TYPE    130     69    103
D14V11, multiclass
        clus
vv       7Q MUTATED 7Q WILD-TYPE
  CLUS_1         46          130
  CLUS_2         21           69
  CLUS_3         13          103
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q MUTATED       22     33     20      5
  7Q WILD-TYPE     79     67    126     30
D14V12, multiclass
        clus
vv       7Q MUTATED 7Q WILD-TYPE
  CLUS_1         22           79
  CLUS_2         33           67
  CLUS_3         20          126
  CLUS_4          5           30

Clustering(15) Variable = 8P MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P MUTATED        1      9      2      0
  8P WILD-TYPE     13      8     10     10
D15V1, multiclass
        clus
vv       8P MUTATED 8P WILD-TYPE
  CLUS_1          1           13
  CLUS_2          9            8
  CLUS_3          2           10
  CLUS_4          0           10
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  8P MUTATED        1      3      8
  8P WILD-TYPE     18     16      7
D15V2, multiclass
        clus
vv       8P MUTATED 8P WILD-TYPE
  CLUS_1          1           18
  CLUS_2          3           16
  CLUS_3          8            7
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8P MUTATED       42      8    107     15     15      1
  8P WILD-TYPE    258     16     45      7      0      0
D15V3, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  8P MUTATED       88     32     41
  8P WILD-TYPE     64     56    119
D15V4, multiclass
        clus
vv       8P MUTATED 8P WILD-TYPE
  CLUS_1         88           64
  CLUS_2         32           56
  CLUS_3         41          119
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8P MUTATED       12     12      7      2      2     13
  8P WILD-TYPE     29     25     32     10     39     11
D15V5, multiclass
D15V6, binary
              cls
clus            0  1
  8P MUTATED   28 20
  8P WILD-TYPE 93 53
[1] "tbl2"
              cls
clus           [,1] [,2]
  8P MUTATED     28   20
  8P WILD-TYPE   93   53
        clus
vv       8P MUTATED 8P WILD-TYPE
  CLUS_1         28           93
  CLUS_2         20           53
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P MUTATED      107     19     30     29
  8P WILD-TYPE     67     67     85    101
D15V7, multiclass
        clus
vv       8P MUTATED 8P WILD-TYPE
  CLUS_1        107           67
  CLUS_2         19           67
  CLUS_3         30           85
  CLUS_4         29          101
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  8P MUTATED      128     16     41
  8P WILD-TYPE    111     68    141
D15V8, multiclass
        clus
vv       8P MUTATED 8P WILD-TYPE
  CLUS_1        128          111
  CLUS_2         16           68
  CLUS_3         41          141
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P MUTATED       90     32     17     21     24
  8P WILD-TYPE     59    106     32     32     92
D15V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  8P MUTATED        5     46    133
  8P WILD-TYPE      8    168    145
D15V10, multiclass
        clus
vv       8P MUTATED 8P WILD-TYPE
  CLUS_1          5            8
  CLUS_2         46          168
  CLUS_3        133          145
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  8P MUTATED       88     37     29
  8P WILD-TYPE     88     53     87
D15V11, multiclass
        clus
vv       8P MUTATED 8P WILD-TYPE
  CLUS_1         88           88
  CLUS_2         37           53
  CLUS_3         29           87
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P MUTATED       42     58     39     15
  8P WILD-TYPE     59     42    107     20
D15V12, multiclass
        clus
vv       8P MUTATED 8P WILD-TYPE
  CLUS_1         42           59
  CLUS_2         58           42
  CLUS_3         39          107
  CLUS_4         15           20

Clustering(16) Variable = 8Q MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q MUTATED        1      9      2      0
  8Q WILD-TYPE     13      8     10     10
D16V1, multiclass
        clus
vv       8Q MUTATED 8Q WILD-TYPE
  CLUS_1          1           13
  CLUS_2          9            8
  CLUS_3          2           10
  CLUS_4          0           10
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  8Q MUTATED        1      3      8
  8Q WILD-TYPE     18     16      7
D16V2, multiclass
        clus
vv       8Q MUTATED 8Q WILD-TYPE
  CLUS_1          1           18
  CLUS_2          3           16
  CLUS_3          8            7
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8Q MUTATED       41      8     93     16     15      1
  8Q WILD-TYPE    259     16     59      6      0      0
D16V3, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  8Q MUTATED       75     28     44
  8Q WILD-TYPE     77     60    116
D16V4, multiclass
        clus
vv       8Q MUTATED 8Q WILD-TYPE
  CLUS_1         75           77
  CLUS_2         28           60
  CLUS_3         44          116
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8Q MUTATED        9     14      8      2      2     13
  8Q WILD-TYPE     32     23     31     10     39     11
D16V5, multiclass
D16V6, binary
              cls
clus            0  1
  8Q MUTATED   29 19
  8Q WILD-TYPE 92 54
[1] "tbl2"
              cls
clus           [,1] [,2]
  8Q MUTATED     29   19
  8Q WILD-TYPE   92   54
        clus
vv       8Q MUTATED 8Q WILD-TYPE
  CLUS_1         29           92
  CLUS_2         19           54
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q MUTATED       92     19     30     31
  8Q WILD-TYPE     82     67     85     99
D16V7, multiclass
        clus
vv       8Q MUTATED 8Q WILD-TYPE
  CLUS_1         92           82
  CLUS_2         19           67
  CLUS_3         30           85
  CLUS_4         31           99
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  8Q MUTATED      113     15     44
  8Q WILD-TYPE    126     69    138
D16V8, multiclass
        clus
vv       8Q MUTATED 8Q WILD-TYPE
  CLUS_1        113          126
  CLUS_2         15           69
  CLUS_3         44          138
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q MUTATED       79     35     14     20     22
  8Q WILD-TYPE     70    103     35     33     94
D16V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  8Q MUTATED        4     48    118
  8Q WILD-TYPE      9    166    160
D16V10, multiclass
        clus
vv       8Q MUTATED 8Q WILD-TYPE
  CLUS_1          4            9
  CLUS_2         48          166
  CLUS_3        118          160
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  8Q MUTATED       83     27     31
  8Q WILD-TYPE     93     63     85
D16V11, multiclass
        clus
vv       8Q MUTATED 8Q WILD-TYPE
  CLUS_1         83           93
  CLUS_2         27           63
  CLUS_3         31           85
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q MUTATED       35     51     40     15
  8Q WILD-TYPE     66     49    106     20
D16V12, multiclass
        clus
vv       8Q MUTATED 8Q WILD-TYPE
  CLUS_1         35           66
  CLUS_2         51           49
  CLUS_3         40          106
  CLUS_4         15           20

Clustering(17) Variable = 9P MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P MUTATED        2      9      0      0
  9P WILD-TYPE     12      8     12     10
D17V1, multiclass
        clus
vv       9P MUTATED 9P WILD-TYPE
  CLUS_1          2           12
  CLUS_2          9            8
  CLUS_3          0           12
  CLUS_4          0           10
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  9P MUTATED        2      0      9
  9P WILD-TYPE     17     19      6
D17V2, multiclass
        clus
vv       9P MUTATED 9P WILD-TYPE
  CLUS_1          2           17
  CLUS_2          0           19
  CLUS_3          9            6
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9P MUTATED        6      8     99      7      0      0
  9P WILD-TYPE    294     16     53     15     15      1
D17V3, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  9P MUTATED       67     24     12
  9P WILD-TYPE     85     64    148
D17V4, multiclass
        clus
vv       9P MUTATED 9P WILD-TYPE
  CLUS_1         67           85
  CLUS_2         24           64
  CLUS_3         12          148
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9P MUTATED        8     12      1      1      1      6
  9P WILD-TYPE     33     25     38     11     40     18
D17V5, multiclass
D17V6, binary
              cls
clus             0   1
  9P MUTATED    13  16
  9P WILD-TYPE 108  57
[1] "tbl2"
              cls
clus           [,1] [,2]
  9P MUTATED     13   16
  9P WILD-TYPE  108   57
        clus
vv       9P MUTATED 9P WILD-TYPE
  CLUS_1         13          108
  CLUS_2         16           57
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P MUTATED       87      9     10     14
  9P WILD-TYPE     87     77    105    116
D17V7, multiclass
        clus
vv       9P MUTATED 9P WILD-TYPE
  CLUS_1         87           87
  CLUS_2          9           77
  CLUS_3         10          105
  CLUS_4         14          116
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  9P MUTATED       99      5     16
  9P WILD-TYPE    140     79    166
D17V8, multiclass
        clus
vv       9P MUTATED 9P WILD-TYPE
  CLUS_1         99          140
  CLUS_2          5           79
  CLUS_3         16          166
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P MUTATED       76     14     10      9      8
  9P WILD-TYPE     73    124     39     44    108
D17V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  9P MUTATED        3     18     96
  9P WILD-TYPE     10    196    182
D17V10, multiclass
        clus
vv       9P MUTATED 9P WILD-TYPE
  CLUS_1          3           10
  CLUS_2         18          196
  CLUS_3         96          182
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  9P MUTATED       60     24     16
  9P WILD-TYPE    116     66    100
D17V11, multiclass
        clus
vv       9P MUTATED 9P WILD-TYPE
  CLUS_1         60          116
  CLUS_2         24           66
  CLUS_3         16          100
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P MUTATED       29     43     20      8
  9P WILD-TYPE     72     57    126     27
D17V12, multiclass
        clus
vv       9P MUTATED 9P WILD-TYPE
  CLUS_1         29           72
  CLUS_2         43           57
  CLUS_3         20          126
  CLUS_4          8           27

Clustering(18) Variable = 9Q MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q MUTATED        0      9      0      0
  9Q WILD-TYPE     14      8     12     10
D18V1, multiclass
        clus
vv       9Q MUTATED 9Q WILD-TYPE
  CLUS_1          0           14
  CLUS_2          9            8
  CLUS_3          0           12
  CLUS_4          0           10
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  9Q MUTATED        0      0      9
  9Q WILD-TYPE     19     19      6
D18V2, multiclass
        clus
vv       9Q MUTATED 9Q WILD-TYPE
  CLUS_1          0           19
  CLUS_2          0           19
  CLUS_3          9            6
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9Q MUTATED        6      7    103     10      0      0
  9Q WILD-TYPE    294     17     49     12     15      1
D18V3, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  9Q MUTATED       69     25     16
  9Q WILD-TYPE     83     63    144
D18V4, multiclass
        clus
vv       9Q MUTATED 9Q WILD-TYPE
  CLUS_1         69           83
  CLUS_2         25           63
  CLUS_3         16          144
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9Q MUTATED        7     13      1      2      1      6
  9Q WILD-TYPE     34     24     38     10     40     18
D18V5, multiclass
D18V6, binary
              cls
clus             0   1
  9Q MUTATED    14  16
  9Q WILD-TYPE 107  57
[1] "tbl2"
              cls
clus           [,1] [,2]
  9Q MUTATED     14   16
  9Q WILD-TYPE  107   57
        clus
vv       9Q MUTATED 9Q WILD-TYPE
  CLUS_1         14          107
  CLUS_2         16           57
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q MUTATED       91      9     11     15
  9Q WILD-TYPE     83     77    104    115
D18V7, multiclass
        clus
vv       9Q MUTATED 9Q WILD-TYPE
  CLUS_1         91           83
  CLUS_2          9           77
  CLUS_3         11          104
  CLUS_4         15          115
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  9Q MUTATED      104      5     17
  9Q WILD-TYPE    135     79    165
D18V8, multiclass
        clus
vv       9Q MUTATED 9Q WILD-TYPE
  CLUS_1        104          135
  CLUS_2          5           79
  CLUS_3         17          165
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q MUTATED       83     15     11      9      5
  9Q WILD-TYPE     66    123     38     44    111
D18V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  9Q MUTATED        4     19    100
  9Q WILD-TYPE      9    195    178
D18V10, multiclass
        clus
vv       9Q MUTATED 9Q WILD-TYPE
  CLUS_1          4            9
  CLUS_2         19          195
  CLUS_3        100          178
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  9Q MUTATED       64     26     17
  9Q WILD-TYPE    112     64     99
D18V11, multiclass
        clus
vv       9Q MUTATED 9Q WILD-TYPE
  CLUS_1         64          112
  CLUS_2         26           64
  CLUS_3         17           99
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q MUTATED       28     46     23     10
  9Q WILD-TYPE     73     54    123     25
D18V12, multiclass
        clus
vv       9Q MUTATED 9Q WILD-TYPE
  CLUS_1         28           73
  CLUS_2         46           54
  CLUS_3         23          123
  CLUS_4         10           25

Clustering(19) Variable = 10P MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P MUTATED        2      6      8      2
  10P WILD-TYPE     12     11      4      8
D19V1, multiclass
        clus
vv       10P MUTATED 10P WILD-TYPE
  CLUS_1           2            12
  CLUS_2           6            11
  CLUS_3           8             4
  CLUS_4           2             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  10P MUTATED        3      9      6
  10P WILD-TYPE     16     10      9
D19V2, multiclass
        clus
vv       10P MUTATED 10P WILD-TYPE
  CLUS_1           3            16
  CLUS_2           9            10
  CLUS_3           6             9
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10P MUTATED       47     15     75      8      7      0
  10P WILD-TYPE    253      9     77     14      8      1
D19V3, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  10P MUTATED       56     25     37
  10P WILD-TYPE     96     63    123
D19V4, multiclass
        clus
vv       10P MUTATED 10P WILD-TYPE
  CLUS_1          56            96
  CLUS_2          25            63
  CLUS_3          37           123
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10P MUTATED        9      8      8      3     13     12
  10P WILD-TYPE     32     29     31      9     28     12
D19V5, multiclass
D19V6, binary
               cls
clus             0  1
  10P MUTATED   36 17
  10P WILD-TYPE 85 56
[1] "tbl2"
               cls
clus            [,1] [,2]
  10P MUTATED     36   17
  10P WILD-TYPE   85   56
        clus
vv       10P MUTATED 10P WILD-TYPE
  CLUS_1          36            85
  CLUS_2          17            56
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P MUTATED       71     16     25     37
  10P WILD-TYPE    103     70     90     93
D19V7, multiclass
        clus
vv       10P MUTATED 10P WILD-TYPE
  CLUS_1          71           103
  CLUS_2          16            70
  CLUS_3          25            90
  CLUS_4          37            93
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  10P MUTATED       85     11     53
  10P WILD-TYPE    154     73    129
D19V8, multiclass
        clus
vv       10P MUTATED 10P WILD-TYPE
  CLUS_1          85           154
  CLUS_2          11            73
  CLUS_3          53           129
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P MUTATED       61     37     17     13     22
  10P WILD-TYPE     88    101     32     40     94
D19V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  10P MUTATED        2     57     91
  10P WILD-TYPE     11    157    187
D19V10, multiclass
        clus
vv       10P MUTATED 10P WILD-TYPE
  CLUS_1           2            11
  CLUS_2          57           157
  CLUS_3          91           187
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  10P MUTATED       54     25     33
  10P WILD-TYPE    122     65     83
D19V11, multiclass
        clus
vv       10P MUTATED 10P WILD-TYPE
  CLUS_1          54           122
  CLUS_2          25            65
  CLUS_3          33            83
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P MUTATED       29     37     38      8
  10P WILD-TYPE     72     63    108     27
D19V12, multiclass
        clus
vv       10P MUTATED 10P WILD-TYPE
  CLUS_1          29            72
  CLUS_2          37            63
  CLUS_3          38           108
  CLUS_4           8            27

Clustering(20) Variable = 10Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q MUTATED        1      6      8      2
  10Q WILD-TYPE     13     11      4      8
D20V1, multiclass
        clus
vv       10Q MUTATED 10Q WILD-TYPE
  CLUS_1           1            13
  CLUS_2           6            11
  CLUS_3           8             4
  CLUS_4           2             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  10Q MUTATED        2      9      6
  10Q WILD-TYPE     17     10      9
D20V2, multiclass
        clus
vv       10Q MUTATED 10Q WILD-TYPE
  CLUS_1           2            17
  CLUS_2           9            10
  CLUS_3           6             9
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10Q MUTATED       47     17     66      6      6      0
  10Q WILD-TYPE    253      7     86     16      9      1
D20V3, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  10Q MUTATED       52     23     35
  10Q WILD-TYPE    100     65    125
D20V4, multiclass
        clus
vv       10Q MUTATED 10Q WILD-TYPE
  CLUS_1          52           100
  CLUS_2          23            65
  CLUS_3          35           125
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10Q MUTATED       10      7      8      2     14     11
  10Q WILD-TYPE     31     30     31     10     27     13
D20V5, multiclass
D20V6, binary
               cls
clus             0  1
  10Q MUTATED   36 16
  10Q WILD-TYPE 85 57
[1] "tbl2"
               cls
clus            [,1] [,2]
  10Q MUTATED     36   16
  10Q WILD-TYPE   85   57
        clus
vv       10Q MUTATED 10Q WILD-TYPE
  CLUS_1          36            85
  CLUS_2          16            57
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q MUTATED       64     13     25     37
  10Q WILD-TYPE    110     73     90     93
D20V7, multiclass
        clus
vv       10Q MUTATED 10Q WILD-TYPE
  CLUS_1          64           110
  CLUS_2          13            73
  CLUS_3          25            90
  CLUS_4          37            93
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  10Q MUTATED       76     12     51
  10Q WILD-TYPE    163     72    131
D20V8, multiclass
        clus
vv       10Q MUTATED 10Q WILD-TYPE
  CLUS_1          76           163
  CLUS_2          12            72
  CLUS_3          51           131
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q MUTATED       55     37     16     13     20
  10Q WILD-TYPE     94    101     33     40     96
D20V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  10Q MUTATED        2     57     82
  10Q WILD-TYPE     11    157    196
D20V10, multiclass
        clus
vv       10Q MUTATED 10Q WILD-TYPE
  CLUS_1           2            11
  CLUS_2          57           157
  CLUS_3          82           196
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  10Q MUTATED       52     20     32
  10Q WILD-TYPE    124     70     84
D20V11, multiclass
        clus
vv       10Q MUTATED 10Q WILD-TYPE
  CLUS_1          52           124
  CLUS_2          20            70
  CLUS_3          32            84
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q MUTATED       23     37     36      8
  10Q WILD-TYPE     78     63    110     27
D20V12, multiclass
        clus
vv       10Q MUTATED 10Q WILD-TYPE
  CLUS_1          23            78
  CLUS_2          37            63
  CLUS_3          36           110
  CLUS_4           8            27

Clustering(21) Variable = 11P MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P MUTATED        0      6      0      0
  11P WILD-TYPE     14     11     12     10
D21V1, multiclass
        clus
vv       11P MUTATED 11P WILD-TYPE
  CLUS_1           0            14
  CLUS_2           6            11
  CLUS_3           0            12
  CLUS_4           0            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  11P MUTATED        0      1      5
  11P WILD-TYPE     19     18     10
D21V2, multiclass
        clus
vv       11P MUTATED 11P WILD-TYPE
  CLUS_1           0            19
  CLUS_2           1            18
  CLUS_3           5            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11P MUTATED        1     11     74      6      1      0
  11P WILD-TYPE    299     13     78     16     14      1
D21V3, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  11P MUTATED       55     21      8
  11P WILD-TYPE     97     67    152
D21V4, multiclass
        clus
vv       11P MUTATED 11P WILD-TYPE
  CLUS_1          55            97
  CLUS_2          21            67
  CLUS_3           8           152
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11P MUTATED        6      6      3      0      2      4
  11P WILD-TYPE     35     31     36     12     39     20
D21V5, multiclass
D21V6, binary
               cls
clus              0   1
  11P MUTATED    12   9
  11P WILD-TYPE 109  64
[1] "tbl2"
               cls
clus            [,1] [,2]
  11P MUTATED     12    9
  11P WILD-TYPE  109   64
        clus
vv       11P MUTATED 11P WILD-TYPE
  CLUS_1          12           109
  CLUS_2           9            64
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P MUTATED       70      7      7      9
  11P WILD-TYPE    104     79    108    121
D21V7, multiclass
        clus
vv       11P MUTATED 11P WILD-TYPE
  CLUS_1          70           104
  CLUS_2           7            79
  CLUS_3           7           108
  CLUS_4           9           121
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  11P MUTATED       79      1     13
  11P WILD-TYPE    160     83    169
D21V8, multiclass
        clus
vv       11P MUTATED 11P WILD-TYPE
  CLUS_1          79           160
  CLUS_2           1            83
  CLUS_3          13           169
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P MUTATED       59     11      9      8      5
  11P WILD-TYPE     90    127     40     45    111
D21V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  11P MUTATED        2     14     76
  11P WILD-TYPE     11    200    202
D21V10, multiclass
        clus
vv       11P MUTATED 11P WILD-TYPE
  CLUS_1           2            11
  CLUS_2          14           200
  CLUS_3          76           202
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  11P MUTATED       54     16     12
  11P WILD-TYPE    122     74    104
D21V11, multiclass
        clus
vv       11P MUTATED 11P WILD-TYPE
  CLUS_1          54           122
  CLUS_2          16            74
  CLUS_3          12           104
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P MUTATED       22     42     14      4
  11P WILD-TYPE     79     58    132     31
D21V12, multiclass
        clus
vv       11P MUTATED 11P WILD-TYPE
  CLUS_1          22            79
  CLUS_2          42            58
  CLUS_3          14           132
  CLUS_4           4            31

Clustering(22) Variable = 11Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q MUTATED        0      2      0      0
  11Q WILD-TYPE     14     15     12     10
D22V1, multiclass
[1] "Remove cluster labels:" "11Q MUTATED"           
clus
  11Q MUTATED 11Q WILD-TYPE 
            2            51 
   TCGA-A5-A0G2    TCGA-A5-A0G5    TCGA-A5-A0GA    TCGA-A5-A0GB    TCGA-A5-A0GE 
"11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" 
   TCGA-A5-A0GH    TCGA-A5-A0GM    TCGA-A5-A0GP    TCGA-A5-A0GU    TCGA-AP-A051 
"11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" 
   TCGA-AP-A052    TCGA-AP-A053    TCGA-AP-A054    TCGA-AP-A056    TCGA-AP-A05A 
"11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" 
   TCGA-AP-A05D    TCGA-AP-A05H    TCGA-AP-A05J    TCGA-AP-A05N    TCGA-AP-A05P 
"11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" 
   TCGA-AP-A0L8    TCGA-AP-A0L9    TCGA-AP-A0LD    TCGA-AP-A0LG    TCGA-AP-A0LH 
"11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" 
   TCGA-AP-A0LJ    TCGA-AP-A0LN    TCGA-AP-A0LT    TCGA-AP-A0LV    TCGA-AX-A05S 
"11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" 
   TCGA-AX-A05T    TCGA-AX-A05U    TCGA-AX-A05W    TCGA-AX-A05Y    TCGA-AX-A05Z 
"11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" 
   TCGA-AX-A060    TCGA-AX-A062    TCGA-AX-A063    TCGA-AX-A064    TCGA-AX-A06B 
"11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" 
   TCGA-AX-A06F    TCGA-AX-A06J    TCGA-AX-A0J1    TCGA-B5-A0JR    TCGA-B5-A0JZ 
"11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" 
   TCGA-B5-A0K0    TCGA-B5-A0K1    TCGA-BG-A0LW    TCGA-BG-A0MI    TCGA-BK-A0C9 
"11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" 
   TCGA-BK-A0CC 
"11Q WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  11Q MUTATED        0      1      1
  11Q WILD-TYPE     19     18     14
D22V2, multiclass
[1] "Remove cluster labels:" "11Q MUTATED"           
clus
  11Q MUTATED 11Q WILD-TYPE 
            2            51 
   TCGA-A5-A0G2    TCGA-A5-A0G5    TCGA-A5-A0GA    TCGA-A5-A0GB    TCGA-A5-A0GE 
"11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" 
   TCGA-A5-A0GH    TCGA-A5-A0GM    TCGA-A5-A0GP    TCGA-A5-A0GU    TCGA-AP-A051 
"11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" 
   TCGA-AP-A052    TCGA-AP-A053    TCGA-AP-A054    TCGA-AP-A056    TCGA-AP-A05A 
"11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" 
   TCGA-AP-A05D    TCGA-AP-A05H    TCGA-AP-A05J    TCGA-AP-A05N    TCGA-AP-A05P 
"11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" 
   TCGA-AP-A0L8    TCGA-AP-A0L9    TCGA-AP-A0LD    TCGA-AP-A0LG    TCGA-AP-A0LH 
"11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" 
   TCGA-AP-A0LJ    TCGA-AP-A0LN    TCGA-AP-A0LT    TCGA-AP-A0LV    TCGA-AX-A05S 
"11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" 
   TCGA-AX-A05T    TCGA-AX-A05U    TCGA-AX-A05W    TCGA-AX-A05Y    TCGA-AX-A05Z 
"11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" 
   TCGA-AX-A060    TCGA-AX-A062    TCGA-AX-A063    TCGA-AX-A064    TCGA-AX-A06B 
"11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" 
   TCGA-AX-A06F    TCGA-AX-A06J    TCGA-AX-A0J1    TCGA-B5-A0JR    TCGA-B5-A0JZ 
"11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" 
   TCGA-B5-A0K0    TCGA-B5-A0K1    TCGA-BG-A0LW    TCGA-BG-A0MI    TCGA-BK-A0C9 
"11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" "11Q WILD-TYPE" 
   TCGA-BK-A0CC 
"11Q WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11Q MUTATED        1     12     66      7      1      0
  11Q WILD-TYPE    299     12     86     15     14      1
D22V3, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  11Q MUTATED       54     18      9
  11Q WILD-TYPE     98     70    151
D22V4, multiclass
        clus
vv       11Q MUTATED 11Q WILD-TYPE
  CLUS_1          54            98
  CLUS_2          18            70
  CLUS_3           9           151
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11Q MUTATED        5      4      3      0      2      4
  11Q WILD-TYPE     36     33     36     12     39     20
D22V5, multiclass
D22V6, binary
               cls
clus              0   1
  11Q MUTATED    12   6
  11Q WILD-TYPE 109  67
[1] "tbl2"
               cls
clus            [,1] [,2]
  11Q MUTATED     12    6
  11Q WILD-TYPE  109   67
        clus
vv       11Q MUTATED 11Q WILD-TYPE
  CLUS_1          12           109
  CLUS_2           6            67
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q MUTATED       64      6      6     11
  11Q WILD-TYPE    110     80    109    119
D22V7, multiclass
        clus
vv       11Q MUTATED 11Q WILD-TYPE
  CLUS_1          64           110
  CLUS_2           6            80
  CLUS_3           6           109
  CLUS_4          11           119
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  11Q MUTATED       72      1     14
  11Q WILD-TYPE    167     83    168
D22V8, multiclass
        clus
vv       11Q MUTATED 11Q WILD-TYPE
  CLUS_1          72           167
  CLUS_2           1            83
  CLUS_3          14           168
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q MUTATED       56     13      6      8      4
  11Q WILD-TYPE     93    125     43     45    112
D22V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  11Q MUTATED        2     15     70
  11Q WILD-TYPE     11    199    208
D22V10, multiclass
        clus
vv       11Q MUTATED 11Q WILD-TYPE
  CLUS_1           2            11
  CLUS_2          15           199
  CLUS_3          70           208
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  11Q MUTATED       53     13     13
  11Q WILD-TYPE    123     77    103
D22V11, multiclass
        clus
vv       11Q MUTATED 11Q WILD-TYPE
  CLUS_1          53           123
  CLUS_2          13            77
  CLUS_3          13           103
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q MUTATED       17     45     14      3
  11Q WILD-TYPE     84     55    132     32
D22V12, multiclass
        clus
vv       11Q MUTATED 11Q WILD-TYPE
  CLUS_1          17            84
  CLUS_2          45            55
  CLUS_3          14           132
  CLUS_4           3            32

Clustering(23) Variable = 12P MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P MUTATED        1      5      3      0
  12P WILD-TYPE     13     12      9     10
D23V1, multiclass
        clus
vv       12P MUTATED 12P WILD-TYPE
  CLUS_1           1            13
  CLUS_2           5            12
  CLUS_3           3             9
  CLUS_4           0            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  12P MUTATED        2      2      5
  12P WILD-TYPE     17     17     10
D23V2, multiclass
        clus
vv       12P MUTATED 12P WILD-TYPE
  CLUS_1           2            17
  CLUS_2           2            17
  CLUS_3           5            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12P MUTATED       12      9     74     10      2      0
  12P WILD-TYPE    288     15     78     12     13      1
D23V3, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  12P MUTATED       55     20     11
  12P WILD-TYPE     97     68    149
D23V4, multiclass
        clus
vv       12P MUTATED 12P WILD-TYPE
  CLUS_1          55            97
  CLUS_2          20            68
  CLUS_3          11           149
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12P MUTATED        6     11      5      0      4      5
  12P WILD-TYPE     35     26     34     12     37     19
D23V5, multiclass
D23V6, binary
               cls
clus              0   1
  12P MUTATED    16  15
  12P WILD-TYPE 105  58
[1] "tbl2"
               cls
clus            [,1] [,2]
  12P MUTATED     16   15
  12P WILD-TYPE  105   58
        clus
vv       12P MUTATED 12P WILD-TYPE
  CLUS_1          16           105
  CLUS_2          15            58
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P MUTATED       74     10      9     13
  12P WILD-TYPE    100     76    106    117
D23V7, multiclass
        clus
vv       12P MUTATED 12P WILD-TYPE
  CLUS_1          74           100
  CLUS_2          10            76
  CLUS_3           9           106
  CLUS_4          13           117
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  12P MUTATED       82      6     18
  12P WILD-TYPE    157     78    164
D23V8, multiclass
        clus
vv       12P MUTATED 12P WILD-TYPE
  CLUS_1          82           157
  CLUS_2           6            78
  CLUS_3          18           164
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P MUTATED       56     12     15      8     14
  12P WILD-TYPE     93    126     34     45    102
D23V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  12P MUTATED        0     22     83
  12P WILD-TYPE     13    192    195
D23V10, multiclass
        clus
vv       12P MUTATED 12P WILD-TYPE
  CLUS_1           0            13
  CLUS_2          22           192
  CLUS_3          83           195
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  12P MUTATED       59     15      9
  12P WILD-TYPE    117     75    107
D23V11, multiclass
        clus
vv       12P MUTATED 12P WILD-TYPE
  CLUS_1          59           117
  CLUS_2          15            75
  CLUS_3           9           107
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P MUTATED       23     41     12      7
  12P WILD-TYPE     78     59    134     28
D23V12, multiclass
        clus
vv       12P MUTATED 12P WILD-TYPE
  CLUS_1          23            78
  CLUS_2          41            59
  CLUS_3          12           134
  CLUS_4           7            28

Clustering(24) Variable = 12Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q MUTATED        1      4      3      0
  12Q WILD-TYPE     13     13      9     10
D24V1, multiclass
        clus
vv       12Q MUTATED 12Q WILD-TYPE
  CLUS_1           1            13
  CLUS_2           4            13
  CLUS_3           3             9
  CLUS_4           0            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  12Q MUTATED        2      2      4
  12Q WILD-TYPE     17     17     11
D24V2, multiclass
        clus
vv       12Q MUTATED 12Q WILD-TYPE
  CLUS_1           2            17
  CLUS_2           2            17
  CLUS_3           4            11
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12Q MUTATED       12      8     53     10      2      0
  12Q WILD-TYPE    288     16     99     12     13      1
D24V3, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  12Q MUTATED       42     16      9
  12Q WILD-TYPE    110     72    151
D24V4, multiclass
        clus
vv       12Q MUTATED 12Q WILD-TYPE
  CLUS_1          42           110
  CLUS_2          16            72
  CLUS_3           9           151
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12Q MUTATED        6      9      5      0      3      4
  12Q WILD-TYPE     35     28     34     12     38     20
D24V5, multiclass
D24V6, binary
               cls
clus              0   1
  12Q MUTATED    13  14
  12Q WILD-TYPE 108  59
[1] "tbl2"
               cls
clus            [,1] [,2]
  12Q MUTATED     13   14
  12Q WILD-TYPE  108   59
        clus
vv       12Q MUTATED 12Q WILD-TYPE
  CLUS_1          13           108
  CLUS_2          14            59
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q MUTATED       57      9      7     11
  12Q WILD-TYPE    117     77    108    119
D24V7, multiclass
        clus
vv       12Q MUTATED 12Q WILD-TYPE
  CLUS_1          57           117
  CLUS_2           9            77
  CLUS_3           7           108
  CLUS_4          11           119
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  12Q MUTATED       64      4     16
  12Q WILD-TYPE    175     80    166
D24V8, multiclass
        clus
vv       12Q MUTATED 12Q WILD-TYPE
  CLUS_1          64           175
  CLUS_2           4            80
  CLUS_3          16           166
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q MUTATED       39     10     13      7     14
  12Q WILD-TYPE    110    128     36     46    102
D24V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  12Q MUTATED        0     18     65
  12Q WILD-TYPE     13    196    213
D24V10, multiclass
        clus
vv       12Q MUTATED 12Q WILD-TYPE
  CLUS_1           0            13
  CLUS_2          18           196
  CLUS_3          65           213
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  12Q MUTATED       45     12      7
  12Q WILD-TYPE    131     78    109
D24V11, multiclass
        clus
vv       12Q MUTATED 12Q WILD-TYPE
  CLUS_1          45           131
  CLUS_2          12            78
  CLUS_3           7           109
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q MUTATED       19     31      9      5
  12Q WILD-TYPE     82     69    137     30
D24V12, multiclass
        clus
vv       12Q MUTATED 12Q WILD-TYPE
  CLUS_1          19            82
  CLUS_2          31            69
  CLUS_3           9           137
  CLUS_4           5            30

Clustering(25) Variable = 13Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q MUTATED        1      5      1      0
  13Q WILD-TYPE     13     12     11     10
D25V1, multiclass
        clus
vv       13Q MUTATED 13Q WILD-TYPE
  CLUS_1           1            13
  CLUS_2           5            12
  CLUS_3           1            11
  CLUS_4           0            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  13Q MUTATED        1      1      5
  13Q WILD-TYPE     18     18     10
D25V2, multiclass
        clus
vv       13Q MUTATED 13Q WILD-TYPE
  CLUS_1           1            18
  CLUS_2           1            18
  CLUS_3           5            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  13Q MUTATED        6      9     88      9      2      0
  13Q WILD-TYPE    294     15     64     13     13      1
D25V3, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  13Q MUTATED       60     25     13
  13Q WILD-TYPE     92     63    147
D25V4, multiclass
        clus
vv       13Q MUTATED 13Q WILD-TYPE
  CLUS_1          60            92
  CLUS_2          25            63
  CLUS_3          13           147
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  13Q MUTATED        6     10      0      1      4      7
  13Q WILD-TYPE     35     27     39     11     37     17
D25V5, multiclass
D25V6, binary
               cls
clus              0   1
  13Q MUTATED    13  15
  13Q WILD-TYPE 108  58
[1] "tbl2"
               cls
clus            [,1] [,2]
  13Q MUTATED     13   15
  13Q WILD-TYPE  108   58
        clus
vv       13Q MUTATED 13Q WILD-TYPE
  CLUS_1          13           108
  CLUS_2          15            58
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q MUTATED       79      7     12     16
  13Q WILD-TYPE     95     79    103    114
D25V7, multiclass
        clus
vv       13Q MUTATED 13Q WILD-TYPE
  CLUS_1          79            95
  CLUS_2           7            79
  CLUS_3          12           103
  CLUS_4          16           114
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  13Q MUTATED       91      1     22
  13Q WILD-TYPE    148     83    160
D25V8, multiclass
        clus
vv       13Q MUTATED 13Q WILD-TYPE
  CLUS_1          91           148
  CLUS_2           1            83
  CLUS_3          22           160
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q MUTATED       67     16      8     13      9
  13Q WILD-TYPE     82    122     41     40    107
D25V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  13Q MUTATED        5     18     90
  13Q WILD-TYPE      8    196    188
D25V10, multiclass
        clus
vv       13Q MUTATED 13Q WILD-TYPE
  CLUS_1           5             8
  CLUS_2          18           196
  CLUS_3          90           188
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  13Q MUTATED       59     19     20
  13Q WILD-TYPE    117     71     96
D25V11, multiclass
        clus
vv       13Q MUTATED 13Q WILD-TYPE
  CLUS_1          59           117
  CLUS_2          19            71
  CLUS_3          20            96
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q MUTATED       28     41     22      7
  13Q WILD-TYPE     73     59    124     28
D25V12, multiclass
        clus
vv       13Q MUTATED 13Q WILD-TYPE
  CLUS_1          28            73
  CLUS_2          41            59
  CLUS_3          22           124
  CLUS_4           7            28

Clustering(26) Variable = 14Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q MUTATED        1      7      1      0
  14Q WILD-TYPE     13     10     11     10
D26V1, multiclass
        clus
vv       14Q MUTATED 14Q WILD-TYPE
  CLUS_1           1            13
  CLUS_2           7            10
  CLUS_3           1            11
  CLUS_4           0            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  14Q MUTATED        1      2      6
  14Q WILD-TYPE     18     17      9
D26V2, multiclass
        clus
vv       14Q MUTATED 14Q WILD-TYPE
  CLUS_1           1            18
  CLUS_2           2            17
  CLUS_3           6             9
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  14Q MUTATED        4      7     75      5      4      0
  14Q WILD-TYPE    296     17     77     17     11      1
D26V3, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  14Q MUTATED       58     13      8
  14Q WILD-TYPE     94     75    152
D26V4, multiclass
        clus
vv       14Q MUTATED 14Q WILD-TYPE
  CLUS_1          58            94
  CLUS_2          13            75
  CLUS_3           8           152
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  14Q MUTATED        7      6      0      1      1      5
  14Q WILD-TYPE     34     31     39     11     40     19
D26V5, multiclass
D26V6, binary
               cls
clus              0   1
  14Q MUTATED     7  13
  14Q WILD-TYPE 114  60
[1] "tbl2"
               cls
clus            [,1] [,2]
  14Q MUTATED      7   13
  14Q WILD-TYPE  114   60
        clus
vv       14Q MUTATED 14Q WILD-TYPE
  CLUS_1           7           114
  CLUS_2          13            60
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q MUTATED       78      2      4     10
  14Q WILD-TYPE     96     84    111    120
D26V7, multiclass
        clus
vv       14Q MUTATED 14Q WILD-TYPE
  CLUS_1          78            96
  CLUS_2           2            84
  CLUS_3           4           111
  CLUS_4          10           120
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  14Q MUTATED       82      0     12
  14Q WILD-TYPE    157     84    170
D26V8, multiclass
        clus
vv       14Q MUTATED 14Q WILD-TYPE
  CLUS_1          82           157
  CLUS_2           0            84
  CLUS_3          12           170
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q MUTATED       58      9      9      9      8
  14Q WILD-TYPE     91    129     40     44    108
D26V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  14Q MUTATED        2      9     82
  14Q WILD-TYPE     11    205    196
D26V10, multiclass
        clus
vv       14Q MUTATED 14Q WILD-TYPE
  CLUS_1           2            11
  CLUS_2           9           205
  CLUS_3          82           196
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  14Q MUTATED       54     16     10
  14Q WILD-TYPE    122     74    106
D26V11, multiclass
        clus
vv       14Q MUTATED 14Q WILD-TYPE
  CLUS_1          54           122
  CLUS_2          16            74
  CLUS_3          10           106
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q MUTATED       23     39     11      7
  14Q WILD-TYPE     78     61    135     28
D26V12, multiclass
        clus
vv       14Q MUTATED 14Q WILD-TYPE
  CLUS_1          23            78
  CLUS_2          39            61
  CLUS_3          11           135
  CLUS_4           7            28

Clustering(27) Variable = 15Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q MUTATED        0      7      0      0
  15Q WILD-TYPE     14     10     12     10
D27V1, multiclass
        clus
vv       15Q MUTATED 15Q WILD-TYPE
  CLUS_1           0            14
  CLUS_2           7            10
  CLUS_3           0            12
  CLUS_4           0            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  15Q MUTATED        0      0      7
  15Q WILD-TYPE     19     19      8
D27V2, multiclass
        clus
vv       15Q MUTATED 15Q WILD-TYPE
  CLUS_1           0            19
  CLUS_2           0            19
  CLUS_3           7             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  15Q MUTATED        5      5     91     11      0      0
  15Q WILD-TYPE    295     19     61     11     15      1
D27V3, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  15Q MUTATED       64     23     11
  15Q WILD-TYPE     88     65    149
D27V4, multiclass
        clus
vv       15Q MUTATED 15Q WILD-TYPE
  CLUS_1          64            88
  CLUS_2          23            65
  CLUS_3          11           149
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  15Q MUTATED        2     11      2      1      1      4
  15Q WILD-TYPE     39     26     37     11     40     20
D27V5, multiclass
D27V6, binary
               cls
clus              0   1
  15Q MUTATED    10  11
  15Q WILD-TYPE 111  62
[1] "tbl2"
               cls
clus            [,1] [,2]
  15Q MUTATED     10   11
  15Q WILD-TYPE  111   62
        clus
vv       15Q MUTATED 15Q WILD-TYPE
  CLUS_1          10           111
  CLUS_2          11            62
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q MUTATED       85      6     12      9
  15Q WILD-TYPE     89     80    103    121
D27V7, multiclass
        clus
vv       15Q MUTATED 15Q WILD-TYPE
  CLUS_1          85            89
  CLUS_2           6            80
  CLUS_3          12           103
  CLUS_4           9           121
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  15Q MUTATED       97      2     13
  15Q WILD-TYPE    142     82    169
D27V8, multiclass
        clus
vv       15Q MUTATED 15Q WILD-TYPE
  CLUS_1          97           142
  CLUS_2           2            82
  CLUS_3          13           169
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q MUTATED       71     10     13     10      6
  15Q WILD-TYPE     78    128     36     43    110
D27V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  15Q MUTATED        4     12     94
  15Q WILD-TYPE      9    202    184
D27V10, multiclass
        clus
vv       15Q MUTATED 15Q WILD-TYPE
  CLUS_1           4             9
  CLUS_2          12           202
  CLUS_3          94           184
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  15Q MUTATED       64     19     13
  15Q WILD-TYPE    112     71    103
D27V11, multiclass
        clus
vv       15Q MUTATED 15Q WILD-TYPE
  CLUS_1          64           112
  CLUS_2          19            71
  CLUS_3          13           103
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q MUTATED       26     46     17      7
  15Q WILD-TYPE     75     54    129     28
D27V12, multiclass
        clus
vv       15Q MUTATED 15Q WILD-TYPE
  CLUS_1          26            75
  CLUS_2          46            54
  CLUS_3          17           129
  CLUS_4           7            28

Clustering(28) Variable = 16P MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P MUTATED        0      7      0      0
  16P WILD-TYPE     14     10     12     10
D28V1, multiclass
        clus
vv       16P MUTATED 16P WILD-TYPE
  CLUS_1           0            14
  CLUS_2           7            10
  CLUS_3           0            12
  CLUS_4           0            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  16P MUTATED        0      0      7
  16P WILD-TYPE     19     19      8
D28V2, multiclass
        clus
vv       16P MUTATED 16P WILD-TYPE
  CLUS_1           0            19
  CLUS_2           0            19
  CLUS_3           7             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16P MUTATED        6      6     96      6      2      0
  16P WILD-TYPE    294     18     56     16     13      1
D28V3, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  16P MUTATED       67     23     14
  16P WILD-TYPE     85     65    146
D28V4, multiclass
        clus
vv       16P MUTATED 16P WILD-TYPE
  CLUS_1          67            85
  CLUS_2          23            65
  CLUS_3          14           146
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16P MUTATED        9      8      2      0      5      5
  16P WILD-TYPE     32     29     37     12     36     19
D28V5, multiclass
D28V6, binary
               cls
clus              0   1
  16P MUTATED    16  13
  16P WILD-TYPE 105  60
[1] "tbl2"
               cls
clus            [,1] [,2]
  16P MUTATED     16   13
  16P WILD-TYPE  105   60
        clus
vv       16P MUTATED 16P WILD-TYPE
  CLUS_1          16           105
  CLUS_2          13            60
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P MUTATED       87      7     11     11
  16P WILD-TYPE     87     79    104    119
D28V7, multiclass
        clus
vv       16P MUTATED 16P WILD-TYPE
  CLUS_1          87            87
  CLUS_2           7            79
  CLUS_3          11           104
  CLUS_4          11           119
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  16P MUTATED       95      3     18
  16P WILD-TYPE    144     81    164
D28V8, multiclass
        clus
vv       16P MUTATED 16P WILD-TYPE
  CLUS_1          95           144
  CLUS_2           3            81
  CLUS_3          18           164
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P MUTATED       71     13     12      8      9
  16P WILD-TYPE     78    125     37     45    107
D28V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  16P MUTATED        3     18     92
  16P WILD-TYPE     10    196    186
D28V10, multiclass
        clus
vv       16P MUTATED 16P WILD-TYPE
  CLUS_1           3            10
  CLUS_2          18           196
  CLUS_3          92           186
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  16P MUTATED       58     28     14
  16P WILD-TYPE    118     62    102
D28V11, multiclass
        clus
vv       16P MUTATED 16P WILD-TYPE
  CLUS_1          58           118
  CLUS_2          28            62
  CLUS_3          14           102
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P MUTATED       35     41     17      7
  16P WILD-TYPE     66     59    129     28
D28V12, multiclass
        clus
vv       16P MUTATED 16P WILD-TYPE
  CLUS_1          35            66
  CLUS_2          41            59
  CLUS_3          17           129
  CLUS_4           7            28

Clustering(29) Variable = 16Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q MUTATED        0      8      1      0
  16Q WILD-TYPE     14      9     11     10
D29V1, multiclass
        clus
vv       16Q MUTATED 16Q WILD-TYPE
  CLUS_1           0            14
  CLUS_2           8             9
  CLUS_3           1            11
  CLUS_4           0            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  16Q MUTATED        0      1      8
  16Q WILD-TYPE     19     18      7
D29V2, multiclass
        clus
vv       16Q MUTATED 16Q WILD-TYPE
  CLUS_1           0            19
  CLUS_2           1            18
  CLUS_3           8             7
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16Q MUTATED       15      9    113      6      1      0
  16Q WILD-TYPE    285     15     39     16     14      1
D29V3, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  16Q MUTATED       78     30     18
  16Q WILD-TYPE     74     58    142
D29V4, multiclass
        clus
vv       16Q MUTATED 16Q WILD-TYPE
  CLUS_1          78            74
  CLUS_2          30            58
  CLUS_3          18           142
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16Q MUTATED        8     11      3      1      7      4
  16Q WILD-TYPE     33     26     36     11     34     20
D29V5, multiclass
D29V6, binary
               cls
clus              0   1
  16Q MUTATED    20  14
  16Q WILD-TYPE 101  59
[1] "tbl2"
               cls
clus            [,1] [,2]
  16Q MUTATED     20   14
  16Q WILD-TYPE  101   59
        clus
vv       16Q MUTATED 16Q WILD-TYPE
  CLUS_1          20           101
  CLUS_2          14            59
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q MUTATED      103      9     16     15
  16Q WILD-TYPE     71     77     99    115
D29V7, multiclass
        clus
vv       16Q MUTATED 16Q WILD-TYPE
  CLUS_1         103            71
  CLUS_2           9            77
  CLUS_3          16            99
  CLUS_4          15           115
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  16Q MUTATED      114      6     23
  16Q WILD-TYPE    125     78    159
D29V8, multiclass
        clus
vv       16Q MUTATED 16Q WILD-TYPE
  CLUS_1         114           125
  CLUS_2           6            78
  CLUS_3          23           159
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q MUTATED       84     16     14     11     15
  16Q WILD-TYPE     65    122     35     42    101
D29V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  16Q MUTATED        3     26    111
  16Q WILD-TYPE     10    188    167
D29V10, multiclass
        clus
vv       16Q MUTATED 16Q WILD-TYPE
  CLUS_1           3            10
  CLUS_2          26           188
  CLUS_3         111           167
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  16Q MUTATED       73     32     17
  16Q WILD-TYPE    103     58     99
D29V11, multiclass
        clus
vv       16Q MUTATED 16Q WILD-TYPE
  CLUS_1          73           103
  CLUS_2          32            58
  CLUS_3          17            99
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q MUTATED       40     52     23      7
  16Q WILD-TYPE     61     48    123     28
D29V12, multiclass
        clus
vv       16Q MUTATED 16Q WILD-TYPE
  CLUS_1          40            61
  CLUS_2          52            48
  CLUS_3          23           123
  CLUS_4           7            28

Clustering(30) Variable = 17P MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P MUTATED        0      8      1      0
  17P WILD-TYPE     14      9     11     10
D30V1, multiclass
        clus
vv       17P MUTATED 17P WILD-TYPE
  CLUS_1           0            14
  CLUS_2           8             9
  CLUS_3           1            11
  CLUS_4           0            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  17P MUTATED        1      0      8
  17P WILD-TYPE     18     19      7
D30V2, multiclass
        clus
vv       17P MUTATED 17P WILD-TYPE
  CLUS_1           1            18
  CLUS_2           0            19
  CLUS_3           8             7
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17P MUTATED        3      5    115      8      1      0
  17P WILD-TYPE    297     19     37     14     14      1
D30V3, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  17P MUTATED       77     25     13
  17P WILD-TYPE     75     63    147
D30V4, multiclass
        clus
vv       17P MUTATED 17P WILD-TYPE
  CLUS_1          77            75
  CLUS_2          25            63
  CLUS_3          13           147
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17P MUTATED        6      9      3      1      1      8
  17P WILD-TYPE     35     28     36     11     40     16
D30V5, multiclass
D30V6, binary
               cls
clus              0   1
  17P MUTATED    16  12
  17P WILD-TYPE 105  61
[1] "tbl2"
               cls
clus            [,1] [,2]
  17P MUTATED     16   12
  17P WILD-TYPE  105   61
        clus
vv       17P MUTATED 17P WILD-TYPE
  CLUS_1          16           105
  CLUS_2          12            61
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P MUTATED      100     10      7     13
  17P WILD-TYPE     74     76    108    117
D30V7, multiclass
        clus
vv       17P MUTATED 17P WILD-TYPE
  CLUS_1         100            74
  CLUS_2          10            76
  CLUS_3           7           108
  CLUS_4          13           117
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  17P MUTATED      109      4     17
  17P WILD-TYPE    130     80    165
D30V8, multiclass
        clus
vv       17P MUTATED 17P WILD-TYPE
  CLUS_1         109           130
  CLUS_2           4            80
  CLUS_3          17           165
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P MUTATED       84     16     12      8      9
  17P WILD-TYPE     65    122     37     45    107
D30V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  17P MUTATED        3     22    104
  17P WILD-TYPE     10    192    174
D30V10, multiclass
        clus
vv       17P MUTATED 17P WILD-TYPE
  CLUS_1           3            10
  CLUS_2          22           192
  CLUS_3         104           174
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  17P MUTATED       67     26     19
  17P WILD-TYPE    109     64     97
D30V11, multiclass
        clus
vv       17P MUTATED 17P WILD-TYPE
  CLUS_1          67           109
  CLUS_2          26            64
  CLUS_3          19            97
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P MUTATED       35     47     23      7
  17P WILD-TYPE     66     53    123     28
D30V12, multiclass
        clus
vv       17P MUTATED 17P WILD-TYPE
  CLUS_1          35            66
  CLUS_2          47            53
  CLUS_3          23           123
  CLUS_4           7            28

Clustering(31) Variable = 17Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q MUTATED        0      7      0      0
  17Q WILD-TYPE     14     10     12     10
D31V1, multiclass
        clus
vv       17Q MUTATED 17Q WILD-TYPE
  CLUS_1           0            14
  CLUS_2           7            10
  CLUS_3           0            12
  CLUS_4           0            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  17Q MUTATED        0      0      7
  17Q WILD-TYPE     19     19      8
D31V2, multiclass
        clus
vv       17Q MUTATED 17Q WILD-TYPE
  CLUS_1           0            19
  CLUS_2           0            19
  CLUS_3           7             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17Q MUTATED        2      6     97      8      1      0
  17Q WILD-TYPE    298     18     55     14     14      1
D31V3, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  17Q MUTATED       65     23     12
  17Q WILD-TYPE     87     65    148
D31V4, multiclass
        clus
vv       17Q MUTATED 17Q WILD-TYPE
  CLUS_1          65            87
  CLUS_2          23            65
  CLUS_3          12           148
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17Q MUTATED        7      8      3      1      1      4
  17Q WILD-TYPE     34     29     36     11     40     20
D31V5, multiclass
D31V6, binary
               cls
clus              0   1
  17Q MUTATED    13  11
  17Q WILD-TYPE 108  62
[1] "tbl2"
               cls
clus            [,1] [,2]
  17Q MUTATED     13   11
  17Q WILD-TYPE  108   62
        clus
vv       17Q MUTATED 17Q WILD-TYPE
  CLUS_1          13           108
  CLUS_2          11            62
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q MUTATED       84      9      6     13
  17Q WILD-TYPE     90     77    109    117
D31V7, multiclass
        clus
vv       17Q MUTATED 17Q WILD-TYPE
  CLUS_1          84            90
  CLUS_2           9            77
  CLUS_3           6           109
  CLUS_4          13           117
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  17Q MUTATED       91      4     17
  17Q WILD-TYPE    148     80    165
D31V8, multiclass
        clus
vv       17Q MUTATED 17Q WILD-TYPE
  CLUS_1          91           148
  CLUS_2           4            80
  CLUS_3          17           165
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q MUTATED       69     15     11      8      8
  17Q WILD-TYPE     80    123     38     45    108
D31V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  17Q MUTATED        3     21     87
  17Q WILD-TYPE     10    193    191
D31V10, multiclass
        clus
vv       17Q MUTATED 17Q WILD-TYPE
  CLUS_1           3            10
  CLUS_2          21           193
  CLUS_3          87           191
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  17Q MUTATED       61     19     18
  17Q WILD-TYPE    115     71     98
D31V11, multiclass
        clus
vv       17Q MUTATED 17Q WILD-TYPE
  CLUS_1          61           115
  CLUS_2          19            71
  CLUS_3          18            98
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q MUTATED       26     43     22      7
  17Q WILD-TYPE     75     57    124     28
D31V12, multiclass
        clus
vv       17Q MUTATED 17Q WILD-TYPE
  CLUS_1          26            75
  CLUS_2          43            57
  CLUS_3          22           124
  CLUS_4           7            28

Clustering(32) Variable = 18P MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P MUTATED        1      5      2      0
  18P WILD-TYPE     13     12     10     10
D32V1, multiclass
        clus
vv       18P MUTATED 18P WILD-TYPE
  CLUS_1           1            13
  CLUS_2           5            12
  CLUS_3           2            10
  CLUS_4           0            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  18P MUTATED        2      1      5
  18P WILD-TYPE     17     18     10
D32V2, multiclass
        clus
vv       18P MUTATED 18P WILD-TYPE
  CLUS_1           2            17
  CLUS_2           1            18
  CLUS_3           5            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18P MUTATED        4      9     94      9      1      0
  18P WILD-TYPE    296     15     58     13     14      1
D32V3, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  18P MUTATED       72     22      7
  18P WILD-TYPE     80     66    153
D32V4, multiclass
        clus
vv       18P MUTATED 18P WILD-TYPE
  CLUS_1          72            80
  CLUS_2          22            66
  CLUS_3           7           153
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18P MUTATED        8      7      2      0      3      7
  18P WILD-TYPE     33     30     37     12     38     17
D32V5, multiclass
D32V6, binary
               cls
clus              0   1
  18P MUTATED    13  14
  18P WILD-TYPE 108  59
[1] "tbl2"
               cls
clus            [,1] [,2]
  18P MUTATED     13   14
  18P WILD-TYPE  108   59
        clus
vv       18P MUTATED 18P WILD-TYPE
  CLUS_1          13           108
  CLUS_2          14            59
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P MUTATED       87     11      8     10
  18P WILD-TYPE     87     75    107    120
D32V7, multiclass
        clus
vv       18P MUTATED 18P WILD-TYPE
  CLUS_1          87            87
  CLUS_2          11            75
  CLUS_3           8           107
  CLUS_4          10           120
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  18P MUTATED       99      3     14
  18P WILD-TYPE    140     81    168
D32V8, multiclass
        clus
vv       18P MUTATED 18P WILD-TYPE
  CLUS_1          99           140
  CLUS_2           3            81
  CLUS_3          14           168
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P MUTATED       74      9     13     12      8
  18P WILD-TYPE     75    129     36     41    108
D32V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  18P MUTATED        1     13    102
  18P WILD-TYPE     12    201    176
D32V10, multiclass
        clus
vv       18P MUTATED 18P WILD-TYPE
  CLUS_1           1            12
  CLUS_2          13           201
  CLUS_3         102           176
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  18P MUTATED       69     21      9
  18P WILD-TYPE    107     69    107
D32V11, multiclass
        clus
vv       18P MUTATED 18P WILD-TYPE
  CLUS_1          69           107
  CLUS_2          21            69
  CLUS_3           9           107
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P MUTATED       29     50     12      8
  18P WILD-TYPE     72     50    134     27
D32V12, multiclass
        clus
vv       18P MUTATED 18P WILD-TYPE
  CLUS_1          29            72
  CLUS_2          50            50
  CLUS_3          12           134
  CLUS_4           8            27

Clustering(33) Variable = 18Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q MUTATED        0      5      2      0
  18Q WILD-TYPE     14     12     10     10
D33V1, multiclass
        clus
vv       18Q MUTATED 18Q WILD-TYPE
  CLUS_1           0            14
  CLUS_2           5            12
  CLUS_3           2            10
  CLUS_4           0            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  18Q MUTATED        1      1      5
  18Q WILD-TYPE     18     18     10
D33V2, multiclass
        clus
vv       18Q MUTATED 18Q WILD-TYPE
  CLUS_1           1            18
  CLUS_2           1            18
  CLUS_3           5            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18Q MUTATED        4      8     82     10      1      0
  18Q WILD-TYPE    296     16     70     12     14      1
D33V3, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  18Q MUTATED       63     22      8
  18Q WILD-TYPE     89     66    152
D33V4, multiclass
        clus
vv       18Q MUTATED 18Q WILD-TYPE
  CLUS_1          63            89
  CLUS_2          22            66
  CLUS_3           8           152
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18Q MUTATED        8      6      2      1      2      5
  18Q WILD-TYPE     33     31     37     11     39     19
D33V5, multiclass
D33V6, binary
               cls
clus              0   1
  18Q MUTATED    12  12
  18Q WILD-TYPE 109  61
[1] "tbl2"
               cls
clus            [,1] [,2]
  18Q MUTATED     12   12
  18Q WILD-TYPE  109   61
        clus
vv       18Q MUTATED 18Q WILD-TYPE
  CLUS_1          12           109
  CLUS_2          12            61
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q MUTATED       76     10      8     10
  18Q WILD-TYPE     98     76    107    120
D33V7, multiclass
        clus
vv       18Q MUTATED 18Q WILD-TYPE
  CLUS_1          76            98
  CLUS_2          10            76
  CLUS_3           8           107
  CLUS_4          10           120
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  18Q MUTATED       89      1     14
  18Q WILD-TYPE    150     83    168
D33V8, multiclass
        clus
vv       18Q MUTATED 18Q WILD-TYPE
  CLUS_1          89           150
  CLUS_2           1            83
  CLUS_3          14           168
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q MUTATED       66     10     11     11      6
  18Q WILD-TYPE     83    128     38     42    110
D33V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  18Q MUTATED        2     11     91
  18Q WILD-TYPE     11    203    187
D33V10, multiclass
        clus
vv       18Q MUTATED 18Q WILD-TYPE
  CLUS_1           2            11
  CLUS_2          11           203
  CLUS_3          91           187
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  18Q MUTATED       63     18     10
  18Q WILD-TYPE    113     72    106
D33V11, multiclass
        clus
vv       18Q MUTATED 18Q WILD-TYPE
  CLUS_1          63           113
  CLUS_2          18            72
  CLUS_3          10           106
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q MUTATED       25     45     13      8
  18Q WILD-TYPE     76     55    133     27
D33V12, multiclass
        clus
vv       18Q MUTATED 18Q WILD-TYPE
  CLUS_1          25            76
  CLUS_2          45            55
  CLUS_3          13           133
  CLUS_4           8            27

Clustering(34) Variable = 19P MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P MUTATED        0      6      0      0
  19P WILD-TYPE     14     11     12     10
D34V1, multiclass
        clus
vv       19P MUTATED 19P WILD-TYPE
  CLUS_1           0            14
  CLUS_2           6            11
  CLUS_3           0            12
  CLUS_4           0            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  19P MUTATED        0      0      6
  19P WILD-TYPE     19     19      9
D34V2, multiclass
        clus
vv       19P MUTATED 19P WILD-TYPE
  CLUS_1           0            19
  CLUS_2           0            19
  CLUS_3           6             9
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19P MUTATED        1      8     89      7      2      0
  19P WILD-TYPE    299     16     63     15     13      1
D34V3, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  19P MUTATED       69     18      9
  19P WILD-TYPE     83     70    151
D34V4, multiclass
        clus
vv       19P MUTATED 19P WILD-TYPE
  CLUS_1          69            83
  CLUS_2          18            70
  CLUS_3           9           151
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19P MUTATED        6      6      2      0      2      6
  19P WILD-TYPE     35     31     37     12     39     18
D34V5, multiclass
D34V6, binary
               cls
clus              0   1
  19P MUTATED    10  12
  19P WILD-TYPE 111  61
[1] "tbl2"
               cls
clus            [,1] [,2]
  19P MUTATED     10   12
  19P WILD-TYPE  111   61
        clus
vv       19P MUTATED 19P WILD-TYPE
  CLUS_1          10           111
  CLUS_2          12            61
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P MUTATED       83      9      6      8
  19P WILD-TYPE     91     77    109    122
D34V7, multiclass
        clus
vv       19P MUTATED 19P WILD-TYPE
  CLUS_1          83            91
  CLUS_2           9            77
  CLUS_3           6           109
  CLUS_4           8           122
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  19P MUTATED       94      2     10
  19P WILD-TYPE    145     82    172
D34V8, multiclass
        clus
vv       19P MUTATED 19P WILD-TYPE
  CLUS_1          94           145
  CLUS_2           2            82
  CLUS_3          10           172
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P MUTATED       71     10     10      6      8
  19P WILD-TYPE     78    128     39     47    108
D34V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  19P MUTATED        4     14     87
  19P WILD-TYPE      9    200    191
D34V10, multiclass
        clus
vv       19P MUTATED 19P WILD-TYPE
  CLUS_1           4             9
  CLUS_2          14           200
  CLUS_3          87           191
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  19P MUTATED       62     20     11
  19P WILD-TYPE    114     70    105
D34V11, multiclass
        clus
vv       19P MUTATED 19P WILD-TYPE
  CLUS_1          62           114
  CLUS_2          20            70
  CLUS_3          11           105
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P MUTATED       25     46     15      7
  19P WILD-TYPE     76     54    131     28
D34V12, multiclass
        clus
vv       19P MUTATED 19P WILD-TYPE
  CLUS_1          25            76
  CLUS_2          46            54
  CLUS_3          15           131
  CLUS_4           7            28

Clustering(35) Variable = 19Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q MUTATED        0      5      1      0
  19Q WILD-TYPE     14     12     11     10
D35V1, multiclass
        clus
vv       19Q MUTATED 19Q WILD-TYPE
  CLUS_1           0            14
  CLUS_2           5            12
  CLUS_3           1            11
  CLUS_4           0            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  19Q MUTATED        1      0      5
  19Q WILD-TYPE     18     19     10
D35V2, multiclass
        clus
vv       19Q MUTATED 19Q WILD-TYPE
  CLUS_1           1            18
  CLUS_2           0            19
  CLUS_3           5            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19Q MUTATED        2      8     89      6      2      0
  19Q WILD-TYPE    298     16     63     16     13      1
D35V3, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  19Q MUTATED       62     22     10
  19Q WILD-TYPE     90     66    150
D35V4, multiclass
        clus
vv       19Q MUTATED 19Q WILD-TYPE
  CLUS_1          62            90
  CLUS_2          22            66
  CLUS_3          10           150
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19Q MUTATED        4      6      2      0      2      7
  19Q WILD-TYPE     37     31     37     12     39     17
D35V5, multiclass
D35V6, binary
               cls
clus              0   1
  19Q MUTATED    11  10
  19Q WILD-TYPE 110  63
[1] "tbl2"
               cls
clus            [,1] [,2]
  19Q MUTATED     11   10
  19Q WILD-TYPE  110   63
        clus
vv       19Q MUTATED 19Q WILD-TYPE
  CLUS_1          11           110
  CLUS_2          10            63
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q MUTATED       82     10      6      8
  19Q WILD-TYPE     92     76    109    122
D35V7, multiclass
        clus
vv       19Q MUTATED 19Q WILD-TYPE
  CLUS_1          82            92
  CLUS_2          10            76
  CLUS_3           6           109
  CLUS_4           8           122
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  19Q MUTATED       95      1     10
  19Q WILD-TYPE    144     83    172
D35V8, multiclass
        clus
vv       19Q MUTATED 19Q WILD-TYPE
  CLUS_1          95           144
  CLUS_2           1            83
  CLUS_3          10           172
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q MUTATED       70     10     10      7      8
  19Q WILD-TYPE     79    128     39     46    108
D35V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  19Q MUTATED        4     13     88
  19Q WILD-TYPE      9    201    190
D35V10, multiclass
        clus
vv       19Q MUTATED 19Q WILD-TYPE
  CLUS_1           4             9
  CLUS_2          13           201
  CLUS_3          88           190
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  19Q MUTATED       58     22     11
  19Q WILD-TYPE    118     68    105
D35V11, multiclass
        clus
vv       19Q MUTATED 19Q WILD-TYPE
  CLUS_1          58           118
  CLUS_2          22            68
  CLUS_3          11           105
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q MUTATED       25     46     14      6
  19Q WILD-TYPE     76     54    132     29
D35V12, multiclass
        clus
vv       19Q MUTATED 19Q WILD-TYPE
  CLUS_1          25            76
  CLUS_2          46            54
  CLUS_3          14           132
  CLUS_4           6            29

Clustering(36) Variable = 20P MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P MUTATED        1      5      0      0
  20P WILD-TYPE     13     12     12     10
D36V1, multiclass
        clus
vv       20P MUTATED 20P WILD-TYPE
  CLUS_1           1            13
  CLUS_2           5            12
  CLUS_3           0            12
  CLUS_4           0            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  20P MUTATED        1      0      5
  20P WILD-TYPE     18     19     10
D36V2, multiclass
        clus
vv       20P MUTATED 20P WILD-TYPE
  CLUS_1           1            18
  CLUS_2           0            19
  CLUS_3           5            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20P MUTATED        7     10     89     17      1      0
  20P WILD-TYPE    293     14     63      5     14      1
D36V3, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  20P MUTATED       72     18     19
  20P WILD-TYPE     80     70    141
D36V4, multiclass
        clus
vv       20P MUTATED 20P WILD-TYPE
  CLUS_1          72            80
  CLUS_2          18            70
  CLUS_3          19           141
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20P MUTATED        6      8      2      0      3      6
  20P WILD-TYPE     35     29     37     12     38     18
D36V5, multiclass
D36V6, binary
               cls
clus              0   1
  20P MUTATED    13  12
  20P WILD-TYPE 108  61
[1] "tbl2"
               cls
clus            [,1] [,2]
  20P MUTATED     13   12
  20P WILD-TYPE  108   61
        clus
vv       20P MUTATED 20P WILD-TYPE
  CLUS_1          13           108
  CLUS_2          12            61
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P MUTATED       84     13     10     16
  20P WILD-TYPE     90     73    105    114
D36V7, multiclass
        clus
vv       20P MUTATED 20P WILD-TYPE
  CLUS_1          84            90
  CLUS_2          13            73
  CLUS_3          10           105
  CLUS_4          16           114
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  20P MUTATED       97      3     23
  20P WILD-TYPE    142     81    159
D36V8, multiclass
        clus
vv       20P MUTATED 20P WILD-TYPE
  CLUS_1          97           142
  CLUS_2           3            81
  CLUS_3          23           159
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P MUTATED       71     16     13     10     13
  20P WILD-TYPE     78    122     36     43    103
D36V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  20P MUTATED        3     22     98
  20P WILD-TYPE     10    192    180
D36V10, multiclass
        clus
vv       20P MUTATED 20P WILD-TYPE
  CLUS_1           3            10
  CLUS_2          22           192
  CLUS_3          98           180
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  20P MUTATED       68     20     17
  20P WILD-TYPE    108     70     99
D36V11, multiclass
        clus
vv       20P MUTATED 20P WILD-TYPE
  CLUS_1          68           108
  CLUS_2          20            70
  CLUS_3          17            99
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P MUTATED       25     51     22      7
  20P WILD-TYPE     76     49    124     28
D36V12, multiclass
        clus
vv       20P MUTATED 20P WILD-TYPE
  CLUS_1          25            76
  CLUS_2          51            49
  CLUS_3          22           124
  CLUS_4           7            28

Clustering(37) Variable = 20Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q MUTATED        1      6      0      0
  20Q WILD-TYPE     13     11     12     10
D37V1, multiclass
        clus
vv       20Q MUTATED 20Q WILD-TYPE
  CLUS_1           1            13
  CLUS_2           6            11
  CLUS_3           0            12
  CLUS_4           0            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  20Q MUTATED        1      0      6
  20Q WILD-TYPE     18     19      9
D37V2, multiclass
        clus
vv       20Q MUTATED 20Q WILD-TYPE
  CLUS_1           1            18
  CLUS_2           0            19
  CLUS_3           6             9
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20Q MUTATED        7     10     97     18      1      0
  20Q WILD-TYPE    293     14     55      4     14      1
D37V3, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  20Q MUTATED       77     21     20
  20Q WILD-TYPE     75     67    140
D37V4, multiclass
        clus
vv       20Q MUTATED 20Q WILD-TYPE
  CLUS_1          77            75
  CLUS_2          21            67
  CLUS_3          20           140
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20Q MUTATED        6     10      3      0      3      6
  20Q WILD-TYPE     35     27     36     12     38     18
D37V5, multiclass
D37V6, binary
               cls
clus              0   1
  20Q MUTATED    15  13
  20Q WILD-TYPE 106  60
[1] "tbl2"
               cls
clus            [,1] [,2]
  20Q MUTATED     15   13
  20Q WILD-TYPE  106   60
        clus
vv       20Q MUTATED 20Q WILD-TYPE
  CLUS_1          15           106
  CLUS_2          13            60
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q MUTATED       90     15     10     17
  20Q WILD-TYPE     84     71    105    113
D37V7, multiclass
        clus
vv       20Q MUTATED 20Q WILD-TYPE
  CLUS_1          90            84
  CLUS_2          15            71
  CLUS_3          10           105
  CLUS_4          17           113
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  20Q MUTATED      104      4     24
  20Q WILD-TYPE    135     80    158
D37V8, multiclass
        clus
vv       20Q MUTATED 20Q WILD-TYPE
  CLUS_1         104           135
  CLUS_2           4            80
  CLUS_3          24           158
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q MUTATED       75     18     14     10     14
  20Q WILD-TYPE     74    120     35     43    102
D37V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  20Q MUTATED        3     24    104
  20Q WILD-TYPE     10    190    174
D37V10, multiclass
        clus
vv       20Q MUTATED 20Q WILD-TYPE
  CLUS_1           3            10
  CLUS_2          24           190
  CLUS_3         104           174
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  20Q MUTATED       72     22     19
  20Q WILD-TYPE    104     68     97
D37V11, multiclass
        clus
vv       20Q MUTATED 20Q WILD-TYPE
  CLUS_1          72           104
  CLUS_2          22            68
  CLUS_3          19            97
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q MUTATED       27     55     24      7
  20Q WILD-TYPE     74     45    122     28
D37V12, multiclass
        clus
vv       20Q MUTATED 20Q WILD-TYPE
  CLUS_1          27            74
  CLUS_2          55            45
  CLUS_3          24           122
  CLUS_4           7            28

Clustering(38) Variable = 21Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q MUTATED        1      5      0      0
  21Q WILD-TYPE     13     12     12     10
D38V1, multiclass
        clus
vv       21Q MUTATED 21Q WILD-TYPE
  CLUS_1           1            13
  CLUS_2           5            12
  CLUS_3           0            12
  CLUS_4           0            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  21Q MUTATED        1      0      5
  21Q WILD-TYPE     18     19     10
D38V2, multiclass
        clus
vv       21Q MUTATED 21Q WILD-TYPE
  CLUS_1           1            18
  CLUS_2           0            19
  CLUS_3           5            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  21Q MUTATED        5      5     71      5      1      0
  21Q WILD-TYPE    295     19     81     17     14      1
D38V3, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  21Q MUTATED       50     17      9
  21Q WILD-TYPE    102     71    151
D38V4, multiclass
        clus
vv       21Q MUTATED 21Q WILD-TYPE
  CLUS_1          50           102
  CLUS_2          17            71
  CLUS_3           9           151
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  21Q MUTATED        4      7      1      0      1      4
  21Q WILD-TYPE     37     30     38     12     40     20
D38V5, multiclass
D38V6, binary
               cls
clus              0   1
  21Q MUTATED     7  10
  21Q WILD-TYPE 114  63
[1] "tbl2"
               cls
clus            [,1] [,2]
  21Q MUTATED      7   10
  21Q WILD-TYPE  114   63
        clus
vv       21Q MUTATED 21Q WILD-TYPE
  CLUS_1           7           114
  CLUS_2          10            63
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q MUTATED       66     11      5      5
  21Q WILD-TYPE    108     75    110    125
D38V7, multiclass
        clus
vv       21Q MUTATED 21Q WILD-TYPE
  CLUS_1          66           108
  CLUS_2          11            75
  CLUS_3           5           110
  CLUS_4           5           125
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  21Q MUTATED       74      6      7
  21Q WILD-TYPE    165     78    175
D38V8, multiclass
        clus
vv       21Q MUTATED 21Q WILD-TYPE
  CLUS_1          74           165
  CLUS_2           6            78
  CLUS_3           7           175
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q MUTATED       58      4      8      5     10
  21Q WILD-TYPE     91    134     41     48    106
D38V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  21Q MUTATED        0      8     77
  21Q WILD-TYPE     13    206    201
D38V10, multiclass
        clus
vv       21Q MUTATED 21Q WILD-TYPE
  CLUS_1           0            13
  CLUS_2           8           206
  CLUS_3          77           201
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  21Q MUTATED       52     17      6
  21Q WILD-TYPE    124     73    110
D38V11, multiclass
        clus
vv       21Q MUTATED 21Q WILD-TYPE
  CLUS_1          52           124
  CLUS_2          17            73
  CLUS_3           6           110
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q MUTATED       27     37      8      3
  21Q WILD-TYPE     74     63    138     32
D38V12, multiclass
        clus
vv       21Q MUTATED 21Q WILD-TYPE
  CLUS_1          27            74
  CLUS_2          37            63
  CLUS_3           8           138
  CLUS_4           3            32

Clustering(39) Variable = 22Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q MUTATED        1      7      0      0
  22Q WILD-TYPE     13     10     12     10
D39V1, multiclass
        clus
vv       22Q MUTATED 22Q WILD-TYPE
  CLUS_1           1            13
  CLUS_2           7            10
  CLUS_3           0            12
  CLUS_4           0            10
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  22Q MUTATED        1      0      7
  22Q WILD-TYPE     18     19      8
D39V2, multiclass
        clus
vv       22Q MUTATED 22Q WILD-TYPE
  CLUS_1           1            18
  CLUS_2           0            19
  CLUS_3           7             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  22Q MUTATED        6      9    113      8      0      0
  22Q WILD-TYPE    294     15     39     14     15      1
D39V3, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  22Q MUTATED       85     25     14
  22Q WILD-TYPE     67     63    146
D39V4, multiclass
        clus
vv       22Q MUTATED 22Q WILD-TYPE
  CLUS_1          85            67
  CLUS_2          25            63
  CLUS_3          14           146
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  22Q MUTATED        5     10      2      1      1      5
  22Q WILD-TYPE     36     27     37     11     40     19
D39V5, multiclass
D39V6, binary
               cls
clus              0   1
  22Q MUTATED    14  10
  22Q WILD-TYPE 107  63
[1] "tbl2"
               cls
clus            [,1] [,2]
  22Q MUTATED     14   10
  22Q WILD-TYPE  107   63
        clus
vv       22Q MUTATED 22Q WILD-TYPE
  CLUS_1          14           107
  CLUS_2          10            63
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q MUTATED      103      9      8     15
  22Q WILD-TYPE     71     77    107    115
D39V7, multiclass
        clus
vv       22Q MUTATED 22Q WILD-TYPE
  CLUS_1         103            71
  CLUS_2           9            77
  CLUS_3           8           107
  CLUS_4          15           115
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  22Q MUTATED      116      1     18
  22Q WILD-TYPE    123     83    164
D39V8, multiclass
        clus
vv       22Q MUTATED 22Q WILD-TYPE
  CLUS_1         116           123
  CLUS_2           1            83
  CLUS_3          18           164
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q MUTATED       84     18     13      8     10
  22Q WILD-TYPE     65    120     36     45    106
D39V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  22Q MUTATED        5     20    108
  22Q WILD-TYPE      8    194    170
D39V10, multiclass
        clus
vv       22Q MUTATED 22Q WILD-TYPE
  CLUS_1           5             8
  CLUS_2          20           194
  CLUS_3         108           170
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  22Q MUTATED       77     25     18
  22Q WILD-TYPE     99     65     98
D39V11, multiclass
        clus
vv       22Q MUTATED 22Q WILD-TYPE
  CLUS_1          77            99
  CLUS_2          25            65
  CLUS_3          18            98
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q MUTATED       33     60     21      6
  22Q WILD-TYPE     68     40    125     29
D39V12, multiclass
        clus
vv       22Q MUTATED 22Q WILD-TYPE
  CLUS_1          33            68
  CLUS_2          60            40
  CLUS_3          21           125
  CLUS_4           6            29

Clustering(40) Variable = XQ MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ MUTATED        1      7      2      0
  XQ WILD-TYPE     13     10     10     10
D40V1, multiclass
        clus
vv       XQ MUTATED XQ WILD-TYPE
  CLUS_1          1           13
  CLUS_2          7           10
  CLUS_3          2           10
  CLUS_4          0           10
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  XQ MUTATED        2      1      7
  XQ WILD-TYPE     17     18      8
D40V2, multiclass
        clus
vv       XQ MUTATED XQ WILD-TYPE
  CLUS_1          2           17
  CLUS_2          1           18
  CLUS_3          7            8
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XQ MUTATED        9     15     82     12     12      0
  XQ WILD-TYPE    291      9     70     10      3      1
D40V3, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  XQ MUTATED       56     25     22
  XQ WILD-TYPE     96     63    138
D40V4, multiclass
        clus
vv       XQ MUTATED XQ WILD-TYPE
  CLUS_1         56           96
  CLUS_2         25           63
  CLUS_3         22          138
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XQ MUTATED        6     17      6      3      4      4
  XQ WILD-TYPE     35     20     33      9     37     20
D40V5, multiclass
D40V6, binary
              cls
clus            0  1
  XQ MUTATED   23 17
  XQ WILD-TYPE 98 56
[1] "tbl2"
              cls
clus           [,1] [,2]
  XQ MUTATED     23   17
  XQ WILD-TYPE   98   56
        clus
vv       XQ MUTATED XQ WILD-TYPE
  CLUS_1         23           98
  CLUS_2         17           56
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ MUTATED       78     10     17     21
  XQ WILD-TYPE     96     76     98    109
D40V7, multiclass
        clus
vv       XQ MUTATED XQ WILD-TYPE
  CLUS_1         78           96
  CLUS_2         10           76
  CLUS_3         17           98
  CLUS_4         21          109
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  XQ MUTATED       88      9     29
  XQ WILD-TYPE    151     75    153
D40V8, multiclass
        clus
vv       XQ MUTATED XQ WILD-TYPE
  CLUS_1         88          151
  CLUS_2          9           75
  CLUS_3         29          153
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ MUTATED       67     23      8     11     18
  XQ WILD-TYPE     82    115     41     42     98
D40V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  XQ MUTATED        5     34     88
  XQ WILD-TYPE      8    180    190
D40V10, multiclass
        clus
vv       XQ MUTATED XQ WILD-TYPE
  CLUS_1          5            8
  CLUS_2         34          180
  CLUS_3         88          190
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  XQ MUTATED       66     16     22
  XQ WILD-TYPE    110     74     94
D40V11, multiclass
        clus
vv       XQ MUTATED XQ WILD-TYPE
  CLUS_1         66          110
  CLUS_2         16           74
  CLUS_3         22           94
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ MUTATED       23     45     26     10
  XQ WILD-TYPE     78     55    120     25
D40V12, multiclass
        clus
vv       XQ MUTATED XQ WILD-TYPE
  CLUS_1         23           78
  CLUS_2         45           55
  CLUS_3         26          120
  CLUS_4         10           25
> q(save="no")
