
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/UCS-TP/6158605/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/UCS-TP/6154832/UCS-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=UCS-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oT=UCS-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/UCS-TP/6154832/UCS-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/UCS-TP/6158605/transformed.cor.cli.txt"

nPatients in clinical file=33, in cluster file=56, common to both=32
[1] "Reduce the number of clustering variables from 62 to 61."
[1] 61 32
[1] "AMP PEAK  1(1Q22) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                         22                          10 
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                         22                          10 
[1] "AMP PEAK  2(2P14) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  2(2P14) MUTATED AMP PEAK  2(2P14) WILD-TYPE 
                         15                          17 
  AMP PEAK  2(2P14) MUTATED AMP PEAK  2(2P14) WILD-TYPE 
                         15                          17 
[1] "AMP PEAK  3(2Q13) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  3(2Q13) MUTATED AMP PEAK  3(2Q13) WILD-TYPE 
                         15                          17 
  AMP PEAK  3(2Q13) MUTATED AMP PEAK  3(2Q13) WILD-TYPE 
                         15                          17 
[1] "AMP PEAK  4(3P25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                           12                            20 
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                           12                            20 
[1] "AMP PEAK  5(3Q26.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE 
                           21                            11 
  AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE 
                           21                            11 
[1] "AMP PEAK  6(4P16.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE 
                           15                            17 
  AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE 
                           15                            17 
[1] "AMP PEAK  7(5P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  7(5P13.2) MUTATED AMP PEAK  7(5P13.2) WILD-TYPE 
                           15                            17 
  AMP PEAK  7(5P13.2) MUTATED AMP PEAK  7(5P13.2) WILD-TYPE 
                           15                            17 
[1] "AMP PEAK  8(6P24.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  8(6P24.2) MUTATED AMP PEAK  8(6P24.2) WILD-TYPE 
                           20                            12 
  AMP PEAK  8(6P24.2) MUTATED AMP PEAK  8(6P24.2) WILD-TYPE 
                           20                            12 
[1] "AMP PEAK  9(8P11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK  9(8P11.21) MUTATED AMP PEAK  9(8P11.21) WILD-TYPE 
                            18                             14 
  AMP PEAK  9(8P11.21) MUTATED AMP PEAK  9(8P11.21) WILD-TYPE 
                            18                             14 
[1] "AMP PEAK 10(8Q11.23) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 10(8Q11.23) MUTATED AMP PEAK 10(8Q11.23) WILD-TYPE 
                            21                             11 
  AMP PEAK 10(8Q11.23) MUTATED AMP PEAK 10(8Q11.23) WILD-TYPE 
                            21                             11 
[1] "AMP PEAK 11(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                            23                              9 
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                            23                              9 
[1] "AMP PEAK 12(8Q24.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                            21                             11 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                            21                             11 
[1] "AMP PEAK 13(10Q22.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 13(10Q22.2) MUTATED AMP PEAK 13(10Q22.2) WILD-TYPE 
                            15                             17 
  AMP PEAK 13(10Q22.2) MUTATED AMP PEAK 13(10Q22.2) WILD-TYPE 
                            15                             17 
[1] "AMP PEAK 14(11Q13.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 14(11Q13.1) MUTATED AMP PEAK 14(11Q13.1) WILD-TYPE 
                            10                             22 
  AMP PEAK 14(11Q13.1) MUTATED AMP PEAK 14(11Q13.1) WILD-TYPE 
                            10                             22 
[1] "AMP PEAK 15(12Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 15(12Q12) MUTATED AMP PEAK 15(12Q12) WILD-TYPE 
                          13                           19 
  AMP PEAK 15(12Q12) MUTATED AMP PEAK 15(12Q12) WILD-TYPE 
                          13                           19 
[1] "AMP PEAK 16(12Q15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                           9                           23 
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                           9                           23 
[1] "AMP PEAK 17(13Q31.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE 
                            15                             17 
  AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE 
                            15                             17 
[1] "AMP PEAK 18(16P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE 
                            13                             19 
  AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE 
                            13                             19 
[1] "AMP PEAK 19(17Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE 
                          18                           14 
  AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE 
                          18                           14 
[1] "AMP PEAK 20(17Q25.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE 
                            16                             16 
  AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE 
                            16                             16 
[1] "AMP PEAK 21(19P13.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE 
                             6                             26 
  AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE 
                             6                             26 
[1] "AMP PEAK 22(19Q12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE 
                          25                            7 
  AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE 
                          25                            7 
[1] "AMP PEAK 23(20Q11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE 
                             29                               3 
  AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE 
                             29                               3 
[1] "AMP PEAK 25(XP11.21) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 25(XP11.21) MUTATED AMP PEAK 25(XP11.21) WILD-TYPE 
                            15                             17 
  AMP PEAK 25(XP11.21) MUTATED AMP PEAK 25(XP11.21) WILD-TYPE 
                            15                             17 
[1] "DEL PEAK  1(1P36.21) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                             9                             23 
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                             9                             23 
[1] "DEL PEAK  2(2Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                            7                            25 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                            7                            25 
[1] "DEL PEAK  3(3P21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(3P21.1) MUTATED DEL PEAK  3(3P21.1) WILD-TYPE 
                           20                            12 
  DEL PEAK  3(3P21.1) MUTATED DEL PEAK  3(3P21.1) WILD-TYPE 
                           20                            12 
[1] "DEL PEAK  4(3P14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(3P14.1) MUTATED DEL PEAK  4(3P14.1) WILD-TYPE 
                           15                            17 
  DEL PEAK  4(3P14.1) MUTATED DEL PEAK  4(3P14.1) WILD-TYPE 
                           15                            17 
[1] "DEL PEAK  5(3Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE 
                            14                             18 
  DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE 
                            14                             18 
[1] "DEL PEAK  6(4Q22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE 
                           23                             9 
  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE 
                           23                             9 
[1] "DEL PEAK  7(4Q34.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                           24                             8 
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                           24                             8 
[1] "DEL PEAK  8(5Q11.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE 
                           13                            19 
  DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE 
                           13                            19 
[1] "DEL PEAK  9(6Q26) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE 
                          8                          24 
  DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE 
                          8                          24 
[1] "DEL PEAK 10(7Q11.22) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(7Q11.22) MUTATED DEL PEAK 10(7Q11.22) WILD-TYPE 
                             7                             25 
  DEL PEAK 10(7Q11.22) MUTATED DEL PEAK 10(7Q11.22) WILD-TYPE 
                             7                             25 
[1] "DEL PEAK 11(7Q36.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(7Q36.2) MUTATED DEL PEAK 11(7Q36.2) WILD-TYPE 
                           12                            20 
  DEL PEAK 11(7Q36.2) MUTATED DEL PEAK 11(7Q36.2) WILD-TYPE 
                           12                            20 
[1] "DEL PEAK 12(8P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(8P21.3) MUTATED DEL PEAK 12(8P21.3) WILD-TYPE 
                           18                            14 
  DEL PEAK 12(8P21.3) MUTATED DEL PEAK 12(8P21.3) WILD-TYPE 
                           18                            14 
[1] "DEL PEAK 13(9P23) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE 
                         16                          16 
  DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE 
                         16                          16 
[1] "DEL PEAK 14(9Q21.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(9Q21.13) MUTATED DEL PEAK 14(9Q21.13) WILD-TYPE 
                            20                             12 
  DEL PEAK 14(9Q21.13) MUTATED DEL PEAK 14(9Q21.13) WILD-TYPE 
                            20                             12 
[1] "DEL PEAK 15(9Q33.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(9Q33.3) MUTATED DEL PEAK 15(9Q33.3) WILD-TYPE 
                           19                            13 
  DEL PEAK 15(9Q33.3) MUTATED DEL PEAK 15(9Q33.3) WILD-TYPE 
                           19                            13 
[1] "DEL PEAK 16(10Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(10Q21.1) MUTATED DEL PEAK 16(10Q21.1) WILD-TYPE 
                             9                             23 
  DEL PEAK 16(10Q21.1) MUTATED DEL PEAK 16(10Q21.1) WILD-TYPE 
                             9                             23 
[1] "DEL PEAK 17(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                             10                              22 
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                             10                              22 
[1] "DEL PEAK 18(11P15.5) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE 
                            11                             21 
  DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE 
                            11                             21 
[1] "DEL PEAK 19(11Q14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 19(11Q14.1) MUTATED DEL PEAK 19(11Q14.1) WILD-TYPE 
                            17                             15 
  DEL PEAK 19(11Q14.1) MUTATED DEL PEAK 19(11Q14.1) WILD-TYPE 
                            17                             15 
[1] "DEL PEAK 20(11Q24.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 20(11Q24.2) MUTATED DEL PEAK 20(11Q24.2) WILD-TYPE 
                            18                             14 
  DEL PEAK 20(11Q24.2) MUTATED DEL PEAK 20(11Q24.2) WILD-TYPE 
                            18                             14 
[1] "DEL PEAK 21(12Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 21(12Q23.1) MUTATED DEL PEAK 21(12Q23.1) WILD-TYPE 
                            12                             20 
  DEL PEAK 21(12Q23.1) MUTATED DEL PEAK 21(12Q23.1) WILD-TYPE 
                            12                             20 
[1] "DEL PEAK 22(12Q24.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE 
                             13                              19 
  DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE 
                             13                              19 
[1] "DEL PEAK 23(13Q12.11) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 23(13Q12.11) MUTATED DEL PEAK 23(13Q12.11) WILD-TYPE 
                             18                              14 
  DEL PEAK 23(13Q12.11) MUTATED DEL PEAK 23(13Q12.11) WILD-TYPE 
                             18                              14 
[1] "DEL PEAK 24(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE 
                            17                             15 
  DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE 
                            17                             15 
[1] "DEL PEAK 25(14Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 25(14Q21.1) MUTATED DEL PEAK 25(14Q21.1) WILD-TYPE 
                            18                             14 
  DEL PEAK 25(14Q21.1) MUTATED DEL PEAK 25(14Q21.1) WILD-TYPE 
                            18                             14 
[1] "DEL PEAK 26(15Q15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 26(15Q15.1) MUTATED DEL PEAK 26(15Q15.1) WILD-TYPE 
                            25                              7 
  DEL PEAK 26(15Q15.1) MUTATED DEL PEAK 26(15Q15.1) WILD-TYPE 
                            25                              7 
[1] "DEL PEAK 27(16P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE 
                            19                             13 
  DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE 
                            19                             13 
[1] "DEL PEAK 28(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 28(16Q23.1) MUTATED DEL PEAK 28(16Q23.1) WILD-TYPE 
                            23                              9 
  DEL PEAK 28(16Q23.1) MUTATED DEL PEAK 28(16Q23.1) WILD-TYPE 
                            23                              9 
[1] "DEL PEAK 29(17P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 29(17P13.1) MUTATED DEL PEAK 29(17P13.1) WILD-TYPE 
                            26                              6 
  DEL PEAK 29(17P13.1) MUTATED DEL PEAK 29(17P13.1) WILD-TYPE 
                            26                              6 
[1] "DEL PEAK 30(17Q21.32) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 30(17Q21.32) MUTATED DEL PEAK 30(17Q21.32) WILD-TYPE 
                             11                              21 
  DEL PEAK 30(17Q21.32) MUTATED DEL PEAK 30(17Q21.32) WILD-TYPE 
                             11                              21 
[1] "DEL PEAK 31(18Q22.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 31(18Q22.2) MUTATED DEL PEAK 31(18Q22.2) WILD-TYPE 
                            15                             17 
  DEL PEAK 31(18Q22.2) MUTATED DEL PEAK 31(18Q22.2) WILD-TYPE 
                            15                             17 
[1] "DEL PEAK 32(19P13.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE 
                            29                              3 
  DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE 
                            29                              3 
[1] "DEL PEAK 33(19Q13.33) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 33(19Q13.33) MUTATED DEL PEAK 33(19Q13.33) WILD-TYPE 
                             11                              21 
  DEL PEAK 33(19Q13.33) MUTATED DEL PEAK 33(19Q13.33) WILD-TYPE 
                             11                              21 
[1] "DEL PEAK 34(20P12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 34(20P12.1) MUTATED DEL PEAK 34(20P12.1) WILD-TYPE 
                             5                             27 
  DEL PEAK 34(20P12.1) MUTATED DEL PEAK 34(20P12.1) WILD-TYPE 
                             5                             27 
[1] "DEL PEAK 35(22Q13.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 35(22Q13.31) MUTATED DEL PEAK 35(22Q13.31) WILD-TYPE 
                             24                               8 
  DEL PEAK 35(22Q13.31) MUTATED DEL PEAK 35(22Q13.31) WILD-TYPE 
                             24                               8 
[1] "DEL PEAK 36(XP21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 36(XP21.1) MUTATED DEL PEAK 36(XP21.1) WILD-TYPE 
                           14                            18 
  DEL PEAK 36(XP21.1) MUTATED DEL PEAK 36(XP21.1) WILD-TYPE 
                           14                            18 
[1] "DEL PEAK 37(XQ25) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 37(XQ25) MUTATED DEL PEAK 37(XQ25) WILD-TYPE 
                         13                          19 
  DEL PEAK 37(XQ25) MUTATED DEL PEAK 37(XQ25) WILD-TYPE 
                         13                          19 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "NEOPLASM.DISEASESTAGE"                 
 [6] "PATHOLOGY.T.STAGE"                     
 [7] "PATHOLOGY.N.STAGE"                     
 [8] "PATHOLOGY.M.STAGE"                     
 [9] "DCCUPLOADDATE"                         
[10] "GENDER"                                
[11] "RADIATIONTHERAPY"                      
[12] "RADIATIONS.RADIATION.REGIMENINDICATION"
[13] "GLEASON_SCORE"                         
[14] "PSA_VALUE"                             
[15] "DAYS_TO_PSA"                           
[16] "BATCHNUMBER"                           

Input Data has 16 rows and 32 columns.

[1] "Batch" "16"   
[1] "Last Follow UP"
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
          NA           NA         1439           NA           NA          730 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E 
          NA           NA         2118           NA         1816           NA 
TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO 
          NA           NA           NA          497          424          438 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY 
         219          145          295         2261          833           NA 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
          NA         2596           NA           NA          461           NA 
TCGA-NG-A4VW TCGA-QM-A5NM 
          NA          165 
Variable 1:'AGE':	nDistinctValues=21,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=19,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=15,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'NEOPLASM.DISEASESTAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'PATHOLOGY.T.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'PATHOLOGY.N.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 8:'PATHOLOGY.M.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'GENDER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 13:'GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 16:'BATCH.NUMBER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 32 columns, 1 survival variables, and 1 non-survival variables.
AGE, nv=21, binary=FALSE, numeric=TRUE

Clustering(1) Variable = AMP PEAK  1(1Q22) MUTATION ANALYSIS
D1V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  1(1Q22) MUTATED    9 13
  AMP PEAK  1(1Q22) WILD-TYPE  4  6
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                         22                          10 
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                         13                           6 
$`AMP PEAK  1(1Q22) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RS 
       52.27         4.64        47.31         4.87        24.00        29.95 
TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PL 
       69.63        50.17        59.70        14.70        11.87        13.71 
TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QY 
       16.34        13.94        14.40         7.20         9.70         3.72 
TCGA-NA-A4R1 TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
        6.64         5.49        31.17         5.42 

$`AMP PEAK  1(1Q22) WILD-TYPE`
TCGA-N5-A4RJ TCGA-N5-A4RO TCGA-N8-A4PI TCGA-N8-A4PQ TCGA-NA-A4QW TCGA-NA-A4QX 
       18.08        22.52        26.63         4.77        74.33        27.39 
TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC 
       85.35        10.42        23.47        15.16 

  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                       3.72                        4.77 
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                      69.63                       85.35 
  AMP PEAK  1(1Q22) MUTATED AMP PEAK  1(1Q22) WILD-TYPE 
                     14.170                      22.995 
[1] "3.7 - 69.6 (14.2)" "4.8 - 85.3 (23.0)"
                 TCGA-N5-A4RA                  TCGA-N5-A4RD 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N5-A4RF                  TCGA-N5-A4RJ 
  "AMP PEAK  1(1Q22) MUTATED" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-N5-A4RM                  TCGA-N5-A4RN 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N5-A4RO                  TCGA-N5-A4RS 
"AMP PEAK  1(1Q22) WILD-TYPE"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RU 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N5-A4RV                  TCGA-N5-A59E 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N5-A59F                  TCGA-N8-A4PI 
  "AMP PEAK  1(1Q22) MUTATED" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-N8-A4PL                  TCGA-N8-A4PM 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N8-A4PN                  TCGA-N8-A4PO 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N8-A4PP                  TCGA-N8-A4PQ 
  "AMP PEAK  1(1Q22) MUTATED" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-N8-A56S                  TCGA-NA-A4QW 
  "AMP PEAK  1(1Q22) MUTATED" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-NA-A4QX                  TCGA-NA-A4QY 
"AMP PEAK  1(1Q22) WILD-TYPE"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-NA-A4R1                  TCGA-NA-A5I1 
  "AMP PEAK  1(1Q22) MUTATED" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"AMP PEAK  1(1Q22) WILD-TYPE"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-NG-A4VW                  TCGA-QM-A5NM 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N5-A4RA                  TCGA-N5-A4RD 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N5-A4RF                  TCGA-N5-A4RJ 
  "AMP PEAK  1(1Q22) MUTATED" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-N5-A4RM                  TCGA-N5-A4RN 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N5-A4RO                  TCGA-N5-A4RS 
"AMP PEAK  1(1Q22) WILD-TYPE"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RU 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N5-A4RV                  TCGA-N5-A59E 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N5-A59F                  TCGA-N8-A4PI 
  "AMP PEAK  1(1Q22) MUTATED" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-N8-A4PL                  TCGA-N8-A4PM 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N8-A4PN                  TCGA-N8-A4PO 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N8-A4PP                  TCGA-N8-A4PQ 
  "AMP PEAK  1(1Q22) MUTATED" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-N8-A56S                  TCGA-NA-A4QW 
  "AMP PEAK  1(1Q22) MUTATED" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-NA-A4QX                  TCGA-NA-A4QY 
"AMP PEAK  1(1Q22) WILD-TYPE"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-NA-A4R1                  TCGA-NA-A5I1 
  "AMP PEAK  1(1Q22) MUTATED" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"AMP PEAK  1(1Q22) WILD-TYPE"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-NG-A4VW                  TCGA-QM-A5NM 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N5-A4RA                  TCGA-N5-A4RD 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N5-A4RF                  TCGA-N5-A4RJ 
  "AMP PEAK  1(1Q22) MUTATED" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-N5-A4RM                  TCGA-N5-A4RN 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N5-A4RO                  TCGA-N5-A4RS 
"AMP PEAK  1(1Q22) WILD-TYPE"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RU 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N5-A4RV                  TCGA-N5-A59E 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N5-A59F                  TCGA-N8-A4PI 
  "AMP PEAK  1(1Q22) MUTATED" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-N8-A4PL                  TCGA-N8-A4PM 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N8-A4PN                  TCGA-N8-A4PO 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-N8-A4PP                  TCGA-N8-A4PQ 
  "AMP PEAK  1(1Q22) MUTATED" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-N8-A56S                  TCGA-NA-A4QW 
  "AMP PEAK  1(1Q22) MUTATED" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-NA-A4QX                  TCGA-NA-A4QY 
"AMP PEAK  1(1Q22) WILD-TYPE"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-NA-A4R1                  TCGA-NA-A5I1 
  "AMP PEAK  1(1Q22) MUTATED" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"AMP PEAK  1(1Q22) WILD-TYPE" "AMP PEAK  1(1Q22) WILD-TYPE" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"AMP PEAK  1(1Q22) WILD-TYPE"   "AMP PEAK  1(1Q22) MUTATED" 
                 TCGA-NG-A4VW                  TCGA-QM-A5NM 
  "AMP PEAK  1(1Q22) MUTATED"   "AMP PEAK  1(1Q22) MUTATED" 
[1] "hr=" "1.2"
D1V2, continuous

Clustering(2) Variable = AMP PEAK  2(2P14) MUTATION ANALYSIS
D2V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  2(2P14) MUTATED    4 11
  AMP PEAK  2(2P14) WILD-TYPE  9  8
  AMP PEAK  2(2P14) MUTATED AMP PEAK  2(2P14) WILD-TYPE 
                         15                          17 
  AMP PEAK  2(2P14) MUTATED AMP PEAK  2(2P14) WILD-TYPE 
                         11                           8 
$`AMP PEAK  2(2P14) MUTATED`
TCGA-N5-A4RJ TCGA-N5-A4RS TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PL 
       18.08        29.95        50.17        14.70        11.87        13.71 
TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QY 
       14.40         7.20         4.77         9.70        74.33         3.72 
TCGA-NA-A4R1 TCGA-ND-A4W6 TCGA-ND-A4WA 
        6.64        10.42        23.47 

$`AMP PEAK  2(2P14) WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.27         4.64        47.31         4.87        24.00        22.52 
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN TCGA-NA-A4QX 
       69.63        59.70        26.63        16.34        13.94        27.39 
TCGA-NA-A5I1 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
       85.35        15.16         5.49        31.17         5.42 

  AMP PEAK  2(2P14) MUTATED AMP PEAK  2(2P14) WILD-TYPE 
                       3.72                        4.64 
  AMP PEAK  2(2P14) MUTATED AMP PEAK  2(2P14) WILD-TYPE 
                      74.33                       85.35 
  AMP PEAK  2(2P14) MUTATED AMP PEAK  2(2P14) WILD-TYPE 
                      13.71                       24.00 
[1] "3.7 - 74.3 (13.7)" "4.6 - 85.3 (24.0)"
                 TCGA-N5-A4RA                  TCGA-N5-A4RD 
"AMP PEAK  2(2P14) WILD-TYPE" "AMP PEAK  2(2P14) WILD-TYPE" 
                 TCGA-N5-A4RF                  TCGA-N5-A4RJ 
"AMP PEAK  2(2P14) WILD-TYPE"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-N5-A4RM                  TCGA-N5-A4RN 
"AMP PEAK  2(2P14) WILD-TYPE" "AMP PEAK  2(2P14) WILD-TYPE" 
                 TCGA-N5-A4RO                  TCGA-N5-A4RS 
"AMP PEAK  2(2P14) WILD-TYPE"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RU 
"AMP PEAK  2(2P14) WILD-TYPE"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-N5-A4RV                  TCGA-N5-A59E 
"AMP PEAK  2(2P14) WILD-TYPE"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-N5-A59F                  TCGA-N8-A4PI 
  "AMP PEAK  2(2P14) MUTATED" "AMP PEAK  2(2P14) WILD-TYPE" 
                 TCGA-N8-A4PL                  TCGA-N8-A4PM 
  "AMP PEAK  2(2P14) MUTATED" "AMP PEAK  2(2P14) WILD-TYPE" 
                 TCGA-N8-A4PN                  TCGA-N8-A4PO 
"AMP PEAK  2(2P14) WILD-TYPE"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-N8-A4PP                  TCGA-N8-A4PQ 
  "AMP PEAK  2(2P14) MUTATED"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-N8-A56S                  TCGA-NA-A4QW 
  "AMP PEAK  2(2P14) MUTATED"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-NA-A4QX                  TCGA-NA-A4QY 
"AMP PEAK  2(2P14) WILD-TYPE"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-NA-A4R1                  TCGA-NA-A5I1 
  "AMP PEAK  2(2P14) MUTATED" "AMP PEAK  2(2P14) WILD-TYPE" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
  "AMP PEAK  2(2P14) MUTATED"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"AMP PEAK  2(2P14) WILD-TYPE" "AMP PEAK  2(2P14) WILD-TYPE" 
                 TCGA-NG-A4VW                  TCGA-QM-A5NM 
"AMP PEAK  2(2P14) WILD-TYPE" "AMP PEAK  2(2P14) WILD-TYPE" 
                 TCGA-N5-A4RA                  TCGA-N5-A4RD 
"AMP PEAK  2(2P14) WILD-TYPE" "AMP PEAK  2(2P14) WILD-TYPE" 
                 TCGA-N5-A4RF                  TCGA-N5-A4RJ 
"AMP PEAK  2(2P14) WILD-TYPE"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-N5-A4RM                  TCGA-N5-A4RN 
"AMP PEAK  2(2P14) WILD-TYPE" "AMP PEAK  2(2P14) WILD-TYPE" 
                 TCGA-N5-A4RO                  TCGA-N5-A4RS 
"AMP PEAK  2(2P14) WILD-TYPE"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RU 
"AMP PEAK  2(2P14) WILD-TYPE"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-N5-A4RV                  TCGA-N5-A59E 
"AMP PEAK  2(2P14) WILD-TYPE"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-N5-A59F                  TCGA-N8-A4PI 
  "AMP PEAK  2(2P14) MUTATED" "AMP PEAK  2(2P14) WILD-TYPE" 
                 TCGA-N8-A4PL                  TCGA-N8-A4PM 
  "AMP PEAK  2(2P14) MUTATED" "AMP PEAK  2(2P14) WILD-TYPE" 
                 TCGA-N8-A4PN                  TCGA-N8-A4PO 
"AMP PEAK  2(2P14) WILD-TYPE"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-N8-A4PP                  TCGA-N8-A4PQ 
  "AMP PEAK  2(2P14) MUTATED"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-N8-A56S                  TCGA-NA-A4QW 
  "AMP PEAK  2(2P14) MUTATED"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-NA-A4QX                  TCGA-NA-A4QY 
"AMP PEAK  2(2P14) WILD-TYPE"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-NA-A4R1                  TCGA-NA-A5I1 
  "AMP PEAK  2(2P14) MUTATED" "AMP PEAK  2(2P14) WILD-TYPE" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
  "AMP PEAK  2(2P14) MUTATED"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"AMP PEAK  2(2P14) WILD-TYPE" "AMP PEAK  2(2P14) WILD-TYPE" 
                 TCGA-NG-A4VW                  TCGA-QM-A5NM 
"AMP PEAK  2(2P14) WILD-TYPE" "AMP PEAK  2(2P14) WILD-TYPE" 
                 TCGA-N5-A4RA                  TCGA-N5-A4RD 
"AMP PEAK  2(2P14) WILD-TYPE" "AMP PEAK  2(2P14) WILD-TYPE" 
                 TCGA-N5-A4RF                  TCGA-N5-A4RJ 
"AMP PEAK  2(2P14) WILD-TYPE"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-N5-A4RM                  TCGA-N5-A4RN 
"AMP PEAK  2(2P14) WILD-TYPE" "AMP PEAK  2(2P14) WILD-TYPE" 
                 TCGA-N5-A4RO                  TCGA-N5-A4RS 
"AMP PEAK  2(2P14) WILD-TYPE"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RU 
"AMP PEAK  2(2P14) WILD-TYPE"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-N5-A4RV                  TCGA-N5-A59E 
"AMP PEAK  2(2P14) WILD-TYPE"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-N5-A59F                  TCGA-N8-A4PI 
  "AMP PEAK  2(2P14) MUTATED" "AMP PEAK  2(2P14) WILD-TYPE" 
                 TCGA-N8-A4PL                  TCGA-N8-A4PM 
  "AMP PEAK  2(2P14) MUTATED" "AMP PEAK  2(2P14) WILD-TYPE" 
                 TCGA-N8-A4PN                  TCGA-N8-A4PO 
"AMP PEAK  2(2P14) WILD-TYPE"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-N8-A4PP                  TCGA-N8-A4PQ 
  "AMP PEAK  2(2P14) MUTATED"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-N8-A56S                  TCGA-NA-A4QW 
  "AMP PEAK  2(2P14) MUTATED"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-NA-A4QX                  TCGA-NA-A4QY 
"AMP PEAK  2(2P14) WILD-TYPE"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-NA-A4R1                  TCGA-NA-A5I1 
  "AMP PEAK  2(2P14) MUTATED" "AMP PEAK  2(2P14) WILD-TYPE" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
  "AMP PEAK  2(2P14) MUTATED"   "AMP PEAK  2(2P14) MUTATED" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"AMP PEAK  2(2P14) WILD-TYPE" "AMP PEAK  2(2P14) WILD-TYPE" 
                 TCGA-NG-A4VW                  TCGA-QM-A5NM 
"AMP PEAK  2(2P14) WILD-TYPE" "AMP PEAK  2(2P14) WILD-TYPE" 
[1] "hr=" "2.4"
D2V2, continuous

Clustering(3) Variable = AMP PEAK  3(2Q13) MUTATION ANALYSIS
D3V1, survival
                             sevent
clus2                          0  1
  AMP PEAK  3(2Q13) MUTATED    5 10
  AMP PEAK  3(2Q13) WILD-TYPE  8  9
  AMP PEAK  3(2Q13) MUTATED AMP PEAK  3(2Q13) WILD-TYPE 
                         15                          17 
  AMP PEAK  3(2Q13) MUTATED AMP PEAK  3(2Q13) WILD-TYPE 
                         10                           9 
$`AMP PEAK  3(2Q13) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RJ TCGA-N5-A4RS TCGA-N5-A4RU TCGA-N5-A59F TCGA-N8-A4PL 
       52.27        18.08        29.95        50.17        11.87        13.71 
TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QW 
       16.34        13.94        14.40         7.20         9.70        74.33 
TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-ND-A4WA 
        3.72         6.64        23.47 

$`AMP PEAK  3(2Q13) WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RT 
        4.64        47.31         4.87        24.00        22.52        69.63 
TCGA-N5-A4RV TCGA-N5-A59E TCGA-N8-A4PI TCGA-N8-A4PQ TCGA-NA-A4QX TCGA-NA-A5I1 
       59.70        14.70        26.63         4.77        27.39        85.35 
TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
       10.42        15.16         5.49        31.17         5.42 

  AMP PEAK  3(2Q13) MUTATED AMP PEAK  3(2Q13) WILD-TYPE 
                       3.72                        4.64 
  AMP PEAK  3(2Q13) MUTATED AMP PEAK  3(2Q13) WILD-TYPE 
                      74.33                       85.35 
  AMP PEAK  3(2Q13) MUTATED AMP PEAK  3(2Q13) WILD-TYPE 
                      14.40                       22.52 
[1] "3.7 - 74.3 (14.4)" "4.6 - 85.3 (22.5)"
                 TCGA-N5-A4RA                  TCGA-N5-A4RD 
  "AMP PEAK  3(2Q13) MUTATED" "AMP PEAK  3(2Q13) WILD-TYPE" 
                 TCGA-N5-A4RF                  TCGA-N5-A4RJ 
"AMP PEAK  3(2Q13) WILD-TYPE"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-N5-A4RM                  TCGA-N5-A4RN 
"AMP PEAK  3(2Q13) WILD-TYPE" "AMP PEAK  3(2Q13) WILD-TYPE" 
                 TCGA-N5-A4RO                  TCGA-N5-A4RS 
"AMP PEAK  3(2Q13) WILD-TYPE"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RU 
"AMP PEAK  3(2Q13) WILD-TYPE"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-N5-A4RV                  TCGA-N5-A59E 
"AMP PEAK  3(2Q13) WILD-TYPE" "AMP PEAK  3(2Q13) WILD-TYPE" 
                 TCGA-N5-A59F                  TCGA-N8-A4PI 
  "AMP PEAK  3(2Q13) MUTATED" "AMP PEAK  3(2Q13) WILD-TYPE" 
                 TCGA-N8-A4PL                  TCGA-N8-A4PM 
  "AMP PEAK  3(2Q13) MUTATED"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-N8-A4PN                  TCGA-N8-A4PO 
  "AMP PEAK  3(2Q13) MUTATED"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-N8-A4PP                  TCGA-N8-A4PQ 
  "AMP PEAK  3(2Q13) MUTATED" "AMP PEAK  3(2Q13) WILD-TYPE" 
                 TCGA-N8-A56S                  TCGA-NA-A4QW 
  "AMP PEAK  3(2Q13) MUTATED"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-NA-A4QX                  TCGA-NA-A4QY 
"AMP PEAK  3(2Q13) WILD-TYPE"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-NA-A4R1                  TCGA-NA-A5I1 
  "AMP PEAK  3(2Q13) MUTATED" "AMP PEAK  3(2Q13) WILD-TYPE" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"AMP PEAK  3(2Q13) WILD-TYPE"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"AMP PEAK  3(2Q13) WILD-TYPE" "AMP PEAK  3(2Q13) WILD-TYPE" 
                 TCGA-NG-A4VW                  TCGA-QM-A5NM 
"AMP PEAK  3(2Q13) WILD-TYPE" "AMP PEAK  3(2Q13) WILD-TYPE" 
                 TCGA-N5-A4RA                  TCGA-N5-A4RD 
  "AMP PEAK  3(2Q13) MUTATED" "AMP PEAK  3(2Q13) WILD-TYPE" 
                 TCGA-N5-A4RF                  TCGA-N5-A4RJ 
"AMP PEAK  3(2Q13) WILD-TYPE"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-N5-A4RM                  TCGA-N5-A4RN 
"AMP PEAK  3(2Q13) WILD-TYPE" "AMP PEAK  3(2Q13) WILD-TYPE" 
                 TCGA-N5-A4RO                  TCGA-N5-A4RS 
"AMP PEAK  3(2Q13) WILD-TYPE"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RU 
"AMP PEAK  3(2Q13) WILD-TYPE"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-N5-A4RV                  TCGA-N5-A59E 
"AMP PEAK  3(2Q13) WILD-TYPE" "AMP PEAK  3(2Q13) WILD-TYPE" 
                 TCGA-N5-A59F                  TCGA-N8-A4PI 
  "AMP PEAK  3(2Q13) MUTATED" "AMP PEAK  3(2Q13) WILD-TYPE" 
                 TCGA-N8-A4PL                  TCGA-N8-A4PM 
  "AMP PEAK  3(2Q13) MUTATED"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-N8-A4PN                  TCGA-N8-A4PO 
  "AMP PEAK  3(2Q13) MUTATED"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-N8-A4PP                  TCGA-N8-A4PQ 
  "AMP PEAK  3(2Q13) MUTATED" "AMP PEAK  3(2Q13) WILD-TYPE" 
                 TCGA-N8-A56S                  TCGA-NA-A4QW 
  "AMP PEAK  3(2Q13) MUTATED"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-NA-A4QX                  TCGA-NA-A4QY 
"AMP PEAK  3(2Q13) WILD-TYPE"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-NA-A4R1                  TCGA-NA-A5I1 
  "AMP PEAK  3(2Q13) MUTATED" "AMP PEAK  3(2Q13) WILD-TYPE" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"AMP PEAK  3(2Q13) WILD-TYPE"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"AMP PEAK  3(2Q13) WILD-TYPE" "AMP PEAK  3(2Q13) WILD-TYPE" 
                 TCGA-NG-A4VW                  TCGA-QM-A5NM 
"AMP PEAK  3(2Q13) WILD-TYPE" "AMP PEAK  3(2Q13) WILD-TYPE" 
                 TCGA-N5-A4RA                  TCGA-N5-A4RD 
  "AMP PEAK  3(2Q13) MUTATED" "AMP PEAK  3(2Q13) WILD-TYPE" 
                 TCGA-N5-A4RF                  TCGA-N5-A4RJ 
"AMP PEAK  3(2Q13) WILD-TYPE"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-N5-A4RM                  TCGA-N5-A4RN 
"AMP PEAK  3(2Q13) WILD-TYPE" "AMP PEAK  3(2Q13) WILD-TYPE" 
                 TCGA-N5-A4RO                  TCGA-N5-A4RS 
"AMP PEAK  3(2Q13) WILD-TYPE"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RU 
"AMP PEAK  3(2Q13) WILD-TYPE"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-N5-A4RV                  TCGA-N5-A59E 
"AMP PEAK  3(2Q13) WILD-TYPE" "AMP PEAK  3(2Q13) WILD-TYPE" 
                 TCGA-N5-A59F                  TCGA-N8-A4PI 
  "AMP PEAK  3(2Q13) MUTATED" "AMP PEAK  3(2Q13) WILD-TYPE" 
                 TCGA-N8-A4PL                  TCGA-N8-A4PM 
  "AMP PEAK  3(2Q13) MUTATED"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-N8-A4PN                  TCGA-N8-A4PO 
  "AMP PEAK  3(2Q13) MUTATED"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-N8-A4PP                  TCGA-N8-A4PQ 
  "AMP PEAK  3(2Q13) MUTATED" "AMP PEAK  3(2Q13) WILD-TYPE" 
                 TCGA-N8-A56S                  TCGA-NA-A4QW 
  "AMP PEAK  3(2Q13) MUTATED"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-NA-A4QX                  TCGA-NA-A4QY 
"AMP PEAK  3(2Q13) WILD-TYPE"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-NA-A4R1                  TCGA-NA-A5I1 
  "AMP PEAK  3(2Q13) MUTATED" "AMP PEAK  3(2Q13) WILD-TYPE" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"AMP PEAK  3(2Q13) WILD-TYPE"   "AMP PEAK  3(2Q13) MUTATED" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"AMP PEAK  3(2Q13) WILD-TYPE" "AMP PEAK  3(2Q13) WILD-TYPE" 
                 TCGA-NG-A4VW                  TCGA-QM-A5NM 
"AMP PEAK  3(2Q13) WILD-TYPE" "AMP PEAK  3(2Q13) WILD-TYPE" 
[1] "hr=" "1.4"
D3V2, continuous

Clustering(4) Variable = AMP PEAK  4(3P25.1) MUTATION ANALYSIS
D4V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  4(3P25.1) MUTATED    5  7
  AMP PEAK  4(3P25.1) WILD-TYPE  8 12
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                           12                            20 
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                            7                            12 
$`AMP PEAK  4(3P25.1) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59F TCGA-N8-A4PN TCGA-N8-A4PO 
       52.27        50.17        59.70        11.87        13.94        14.40 
TCGA-N8-A4PQ TCGA-NA-A4QX TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-NG-A4VW 
        4.77        27.39        85.35        10.42        23.47        31.17 

$`AMP PEAK  4(3P25.1) WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
        4.64        47.31        18.08         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A59E TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM 
       29.95        69.63        14.70        26.63        13.71        16.34 
TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-ND-A4WC 
        7.20         9.70        74.33         3.72         6.64        15.16 
TCGA-ND-A4WF TCGA-QM-A5NM 
        5.49         5.42 

  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                         4.77                          3.72 
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                        85.35                         74.33 
  AMP PEAK  4(3P25.1) MUTATED AMP PEAK  4(3P25.1) WILD-TYPE 
                        25.43                         14.93 
[1] "4.8 - 85.3 (25.4)" "3.7 - 74.3 (14.9)"
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "AMP PEAK  4(3P25.1) MUTATED" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"AMP PEAK  4(3P25.1) WILD-TYPE" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
"AMP PEAK  4(3P25.1) WILD-TYPE" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
"AMP PEAK  4(3P25.1) WILD-TYPE" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
"AMP PEAK  4(3P25.1) WILD-TYPE"   "AMP PEAK  4(3P25.1) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
  "AMP PEAK  4(3P25.1) MUTATED" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "AMP PEAK  4(3P25.1) MUTATED" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
"AMP PEAK  4(3P25.1) WILD-TYPE" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
  "AMP PEAK  4(3P25.1) MUTATED"   "AMP PEAK  4(3P25.1) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
"AMP PEAK  4(3P25.1) WILD-TYPE"   "AMP PEAK  4(3P25.1) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
"AMP PEAK  4(3P25.1) WILD-TYPE" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "AMP PEAK  4(3P25.1) MUTATED" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"AMP PEAK  4(3P25.1) WILD-TYPE"   "AMP PEAK  4(3P25.1) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "AMP PEAK  4(3P25.1) MUTATED"   "AMP PEAK  4(3P25.1) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"AMP PEAK  4(3P25.1) WILD-TYPE" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
  "AMP PEAK  4(3P25.1) MUTATED" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "AMP PEAK  4(3P25.1) MUTATED" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"AMP PEAK  4(3P25.1) WILD-TYPE" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
"AMP PEAK  4(3P25.1) WILD-TYPE" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
"AMP PEAK  4(3P25.1) WILD-TYPE" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
"AMP PEAK  4(3P25.1) WILD-TYPE"   "AMP PEAK  4(3P25.1) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
  "AMP PEAK  4(3P25.1) MUTATED" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "AMP PEAK  4(3P25.1) MUTATED" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
"AMP PEAK  4(3P25.1) WILD-TYPE" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
  "AMP PEAK  4(3P25.1) MUTATED"   "AMP PEAK  4(3P25.1) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
"AMP PEAK  4(3P25.1) WILD-TYPE"   "AMP PEAK  4(3P25.1) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
"AMP PEAK  4(3P25.1) WILD-TYPE" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "AMP PEAK  4(3P25.1) MUTATED" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"AMP PEAK  4(3P25.1) WILD-TYPE"   "AMP PEAK  4(3P25.1) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "AMP PEAK  4(3P25.1) MUTATED"   "AMP PEAK  4(3P25.1) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"AMP PEAK  4(3P25.1) WILD-TYPE" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
  "AMP PEAK  4(3P25.1) MUTATED" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "AMP PEAK  4(3P25.1) MUTATED" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"AMP PEAK  4(3P25.1) WILD-TYPE" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
"AMP PEAK  4(3P25.1) WILD-TYPE" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
"AMP PEAK  4(3P25.1) WILD-TYPE" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
"AMP PEAK  4(3P25.1) WILD-TYPE"   "AMP PEAK  4(3P25.1) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
  "AMP PEAK  4(3P25.1) MUTATED" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "AMP PEAK  4(3P25.1) MUTATED" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
"AMP PEAK  4(3P25.1) WILD-TYPE" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
  "AMP PEAK  4(3P25.1) MUTATED"   "AMP PEAK  4(3P25.1) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
"AMP PEAK  4(3P25.1) WILD-TYPE"   "AMP PEAK  4(3P25.1) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
"AMP PEAK  4(3P25.1) WILD-TYPE" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "AMP PEAK  4(3P25.1) MUTATED" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"AMP PEAK  4(3P25.1) WILD-TYPE"   "AMP PEAK  4(3P25.1) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "AMP PEAK  4(3P25.1) MUTATED"   "AMP PEAK  4(3P25.1) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"AMP PEAK  4(3P25.1) WILD-TYPE" "AMP PEAK  4(3P25.1) WILD-TYPE" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
  "AMP PEAK  4(3P25.1) MUTATED" "AMP PEAK  4(3P25.1) WILD-TYPE" 
[1] "hr=" "1.7"
D4V2, continuous

Clustering(5) Variable = AMP PEAK  5(3Q26.2) MUTATION ANALYSIS
D5V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  5(3Q26.2) MUTATED    8 13
  AMP PEAK  5(3Q26.2) WILD-TYPE  5  6
  AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE 
                           21                            11 
  AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE 
                           13                             6 
$`AMP PEAK  5(3Q26.2) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RT 
       52.27         4.64        18.08        24.00        22.52        69.63 
TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP 
       14.70        11.87        13.71        13.94        14.40         7.20 
TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4R1 TCGA-ND-A4WA 
        4.77         9.70        74.33        27.39         6.64        23.47 
TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
        5.49        31.17         5.42 

$`AMP PEAK  5(3Q26.2) WILD-TYPE`
TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RS TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N8-A4PI 
       47.31         4.87        29.95        50.17        59.70        26.63 
TCGA-N8-A4PM TCGA-NA-A4QY TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WC 
       16.34         3.72        85.35        10.42        15.16 

  AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE 
                         4.64                          3.72 
  AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE 
                        74.33                         85.35 
  AMP PEAK  5(3Q26.2) MUTATED AMP PEAK  5(3Q26.2) WILD-TYPE 
                        14.40                         26.63 
[1] "4.6 - 74.3 (14.4)" "3.7 - 85.3 (26.6)"
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "AMP PEAK  5(3Q26.2) MUTATED"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"AMP PEAK  5(3Q26.2) WILD-TYPE"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
"AMP PEAK  5(3Q26.2) WILD-TYPE"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
  "AMP PEAK  5(3Q26.2) MUTATED" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "AMP PEAK  5(3Q26.2) MUTATED" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
"AMP PEAK  5(3Q26.2) WILD-TYPE"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "AMP PEAK  5(3Q26.2) MUTATED" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
  "AMP PEAK  5(3Q26.2) MUTATED" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
  "AMP PEAK  5(3Q26.2) MUTATED"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "AMP PEAK  5(3Q26.2) MUTATED"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
  "AMP PEAK  5(3Q26.2) MUTATED"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "AMP PEAK  5(3Q26.2) MUTATED" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
  "AMP PEAK  5(3Q26.2) MUTATED" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"AMP PEAK  5(3Q26.2) WILD-TYPE"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"AMP PEAK  5(3Q26.2) WILD-TYPE"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
  "AMP PEAK  5(3Q26.2) MUTATED"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "AMP PEAK  5(3Q26.2) MUTATED"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"AMP PEAK  5(3Q26.2) WILD-TYPE"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
"AMP PEAK  5(3Q26.2) WILD-TYPE"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
  "AMP PEAK  5(3Q26.2) MUTATED" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "AMP PEAK  5(3Q26.2) MUTATED" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
"AMP PEAK  5(3Q26.2) WILD-TYPE"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "AMP PEAK  5(3Q26.2) MUTATED" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
  "AMP PEAK  5(3Q26.2) MUTATED" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
  "AMP PEAK  5(3Q26.2) MUTATED"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "AMP PEAK  5(3Q26.2) MUTATED"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
  "AMP PEAK  5(3Q26.2) MUTATED"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "AMP PEAK  5(3Q26.2) MUTATED" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
  "AMP PEAK  5(3Q26.2) MUTATED" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"AMP PEAK  5(3Q26.2) WILD-TYPE"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"AMP PEAK  5(3Q26.2) WILD-TYPE"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
  "AMP PEAK  5(3Q26.2) MUTATED"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "AMP PEAK  5(3Q26.2) MUTATED"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"AMP PEAK  5(3Q26.2) WILD-TYPE"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
"AMP PEAK  5(3Q26.2) WILD-TYPE"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
  "AMP PEAK  5(3Q26.2) MUTATED" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "AMP PEAK  5(3Q26.2) MUTATED" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
"AMP PEAK  5(3Q26.2) WILD-TYPE"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "AMP PEAK  5(3Q26.2) MUTATED" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
  "AMP PEAK  5(3Q26.2) MUTATED" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
  "AMP PEAK  5(3Q26.2) MUTATED"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "AMP PEAK  5(3Q26.2) MUTATED"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
  "AMP PEAK  5(3Q26.2) MUTATED"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "AMP PEAK  5(3Q26.2) MUTATED" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
  "AMP PEAK  5(3Q26.2) MUTATED" "AMP PEAK  5(3Q26.2) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"AMP PEAK  5(3Q26.2) WILD-TYPE"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"AMP PEAK  5(3Q26.2) WILD-TYPE"   "AMP PEAK  5(3Q26.2) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
  "AMP PEAK  5(3Q26.2) MUTATED"   "AMP PEAK  5(3Q26.2) MUTATED" 
[1] "hr=" "1.6"
D5V2, continuous

Clustering(6) Variable = AMP PEAK  6(4P16.3) MUTATION ANALYSIS
D6V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  6(4P16.3) MUTATED    7  8
  AMP PEAK  6(4P16.3) WILD-TYPE  6 11
  AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE 
                           15                            17 
  AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE 
                            8                            11 
$`AMP PEAK  6(4P16.3) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV 
       52.27        22.52        29.95        69.63        50.17        59.70 
TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 
       16.34        13.94         4.77        27.39         3.72         6.64 
TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WC 
       85.35        10.42        15.16 

$`AMP PEAK  6(4P16.3) WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A59E 
        4.64        47.31        18.08         4.87        24.00        14.70 
TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S 
       11.87        26.63        13.71        14.40         7.20         9.70 
TCGA-NA-A4QW TCGA-ND-A4WA TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
       74.33        23.47         5.49        31.17         5.42 

  AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE 
                         3.72                          4.64 
  AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE 
                        85.35                         74.33 
  AMP PEAK  6(4P16.3) MUTATED AMP PEAK  6(4P16.3) WILD-TYPE 
                        22.52                         14.40 
[1] "3.7 - 85.3 (22.5)" "4.6 - 74.3 (14.4)"
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
  "AMP PEAK  6(4P16.3) MUTATED"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "AMP PEAK  6(4P16.3) MUTATED"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "AMP PEAK  6(4P16.3) MUTATED"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
  "AMP PEAK  6(4P16.3) MUTATED"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
  "AMP PEAK  6(4P16.3) MUTATED"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "AMP PEAK  6(4P16.3) MUTATED"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "AMP PEAK  6(4P16.3) MUTATED"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
  "AMP PEAK  6(4P16.3) MUTATED"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
  "AMP PEAK  6(4P16.3) MUTATED"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "AMP PEAK  6(4P16.3) MUTATED"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
"AMP PEAK  6(4P16.3) WILD-TYPE"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "AMP PEAK  6(4P16.3) MUTATED"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
  "AMP PEAK  6(4P16.3) MUTATED"   "AMP PEAK  6(4P16.3) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
  "AMP PEAK  6(4P16.3) MUTATED" "AMP PEAK  6(4P16.3) WILD-TYPE" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"AMP PEAK  6(4P16.3) WILD-TYPE" "AMP PEAK  6(4P16.3) WILD-TYPE" 
[1] "hr=" "1.9"
D6V2, continuous

Clustering(7) Variable = AMP PEAK  7(5P13.2) MUTATION ANALYSIS
D7V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  7(5P13.2) MUTATED    8  7
  AMP PEAK  7(5P13.2) WILD-TYPE  5 12
  AMP PEAK  7(5P13.2) MUTATED AMP PEAK  7(5P13.2) WILD-TYPE 
                           15                            17 
  AMP PEAK  7(5P13.2) MUTATED AMP PEAK  7(5P13.2) WILD-TYPE 
                            7                            12 
$`AMP PEAK  7(5P13.2) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59E 
       52.27         4.87        24.00        69.63        50.17        14.70 
TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-NA-A4QW TCGA-NA-A4QX 
       13.94        14.40         7.20         4.77        74.33        27.39 
TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-NG-A4VW 
       85.35        10.42        31.17 

$`AMP PEAK  7(5P13.2) WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RV 
        4.64        47.31        18.08        22.52        29.95        59.70 
TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A56S TCGA-NA-A4QY 
       11.87        26.63        13.71        16.34         9.70         3.72 
TCGA-NA-A4R1 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-QM-A5NM 
        6.64        23.47        15.16         5.49         5.42 

  AMP PEAK  7(5P13.2) MUTATED AMP PEAK  7(5P13.2) WILD-TYPE 
                         4.77                          3.72 
  AMP PEAK  7(5P13.2) MUTATED AMP PEAK  7(5P13.2) WILD-TYPE 
                        85.35                         59.70 
  AMP PEAK  7(5P13.2) MUTATED AMP PEAK  7(5P13.2) WILD-TYPE 
                        24.00                         15.16 
[1] "4.8 - 85.3 (24.0)" "3.7 - 59.7 (15.2)"
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "AMP PEAK  7(5P13.2) MUTATED" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"AMP PEAK  7(5P13.2) WILD-TYPE" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
  "AMP PEAK  7(5P13.2) MUTATED"   "AMP PEAK  7(5P13.2) MUTATED" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
"AMP PEAK  7(5P13.2) WILD-TYPE" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "AMP PEAK  7(5P13.2) MUTATED"   "AMP PEAK  7(5P13.2) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
"AMP PEAK  7(5P13.2) WILD-TYPE"   "AMP PEAK  7(5P13.2) MUTATED" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
"AMP PEAK  7(5P13.2) WILD-TYPE" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
"AMP PEAK  7(5P13.2) WILD-TYPE" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
  "AMP PEAK  7(5P13.2) MUTATED"   "AMP PEAK  7(5P13.2) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "AMP PEAK  7(5P13.2) MUTATED"   "AMP PEAK  7(5P13.2) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
"AMP PEAK  7(5P13.2) WILD-TYPE"   "AMP PEAK  7(5P13.2) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "AMP PEAK  7(5P13.2) MUTATED" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"AMP PEAK  7(5P13.2) WILD-TYPE"   "AMP PEAK  7(5P13.2) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "AMP PEAK  7(5P13.2) MUTATED" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"AMP PEAK  7(5P13.2) WILD-TYPE" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
  "AMP PEAK  7(5P13.2) MUTATED" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "AMP PEAK  7(5P13.2) MUTATED" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"AMP PEAK  7(5P13.2) WILD-TYPE" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
  "AMP PEAK  7(5P13.2) MUTATED"   "AMP PEAK  7(5P13.2) MUTATED" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
"AMP PEAK  7(5P13.2) WILD-TYPE" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "AMP PEAK  7(5P13.2) MUTATED"   "AMP PEAK  7(5P13.2) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
"AMP PEAK  7(5P13.2) WILD-TYPE"   "AMP PEAK  7(5P13.2) MUTATED" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
"AMP PEAK  7(5P13.2) WILD-TYPE" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
"AMP PEAK  7(5P13.2) WILD-TYPE" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
  "AMP PEAK  7(5P13.2) MUTATED"   "AMP PEAK  7(5P13.2) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "AMP PEAK  7(5P13.2) MUTATED"   "AMP PEAK  7(5P13.2) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
"AMP PEAK  7(5P13.2) WILD-TYPE"   "AMP PEAK  7(5P13.2) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "AMP PEAK  7(5P13.2) MUTATED" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"AMP PEAK  7(5P13.2) WILD-TYPE"   "AMP PEAK  7(5P13.2) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "AMP PEAK  7(5P13.2) MUTATED" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"AMP PEAK  7(5P13.2) WILD-TYPE" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
  "AMP PEAK  7(5P13.2) MUTATED" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "AMP PEAK  7(5P13.2) MUTATED" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"AMP PEAK  7(5P13.2) WILD-TYPE" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
  "AMP PEAK  7(5P13.2) MUTATED"   "AMP PEAK  7(5P13.2) MUTATED" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
"AMP PEAK  7(5P13.2) WILD-TYPE" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "AMP PEAK  7(5P13.2) MUTATED"   "AMP PEAK  7(5P13.2) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
"AMP PEAK  7(5P13.2) WILD-TYPE"   "AMP PEAK  7(5P13.2) MUTATED" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
"AMP PEAK  7(5P13.2) WILD-TYPE" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
"AMP PEAK  7(5P13.2) WILD-TYPE" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
  "AMP PEAK  7(5P13.2) MUTATED"   "AMP PEAK  7(5P13.2) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "AMP PEAK  7(5P13.2) MUTATED"   "AMP PEAK  7(5P13.2) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
"AMP PEAK  7(5P13.2) WILD-TYPE"   "AMP PEAK  7(5P13.2) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "AMP PEAK  7(5P13.2) MUTATED" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"AMP PEAK  7(5P13.2) WILD-TYPE"   "AMP PEAK  7(5P13.2) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "AMP PEAK  7(5P13.2) MUTATED" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"AMP PEAK  7(5P13.2) WILD-TYPE" "AMP PEAK  7(5P13.2) WILD-TYPE" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
  "AMP PEAK  7(5P13.2) MUTATED" "AMP PEAK  7(5P13.2) WILD-TYPE" 
[1] "hr=" "2.5"
D7V2, continuous

Clustering(8) Variable = AMP PEAK  8(6P24.2) MUTATION ANALYSIS
D8V1, survival
                               sevent
clus2                            0  1
  AMP PEAK  8(6P24.2) MUTATED    9 11
  AMP PEAK  8(6P24.2) WILD-TYPE  4  8
  AMP PEAK  8(6P24.2) MUTATED AMP PEAK  8(6P24.2) WILD-TYPE 
                           20                            12 
  AMP PEAK  8(6P24.2) MUTATED AMP PEAK  8(6P24.2) WILD-TYPE 
                           11                             8 
$`AMP PEAK  8(6P24.2) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RT 
       52.27        47.31        18.08         4.87        24.00        69.63 
TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PL TCGA-N8-A4PM 
       50.17        59.70        14.70        11.87        13.71        16.34 
TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-NA-A4QW TCGA-NA-A4QX TCGA-ND-A4W6 
       13.94        14.40         7.20        74.33        27.39        10.42 
TCGA-ND-A4WA TCGA-ND-A4WF 
       23.47         5.49 

$`AMP PEAK  8(6P24.2) WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N8-A4PI TCGA-N8-A4PQ TCGA-N8-A56S 
        4.64        22.52        29.95        26.63         4.77         9.70 
TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WC TCGA-NG-A4VW TCGA-QM-A5NM 
        3.72         6.64        85.35        15.16        31.17         5.42 

  AMP PEAK  8(6P24.2) MUTATED AMP PEAK  8(6P24.2) WILD-TYPE 
                         4.87                          3.72 
  AMP PEAK  8(6P24.2) MUTATED AMP PEAK  8(6P24.2) WILD-TYPE 
                        74.33                         85.35 
  AMP PEAK  8(6P24.2) MUTATED AMP PEAK  8(6P24.2) WILD-TYPE 
                        17.21                         12.43 
[1] "4.9 - 74.3 (17.2)" "3.7 - 85.3 (12.4)"
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "AMP PEAK  8(6P24.2) MUTATED" "AMP PEAK  8(6P24.2) WILD-TYPE" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
"AMP PEAK  8(6P24.2) WILD-TYPE" "AMP PEAK  8(6P24.2) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "AMP PEAK  8(6P24.2) MUTATED" "AMP PEAK  8(6P24.2) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "AMP PEAK  8(6P24.2) MUTATED" "AMP PEAK  8(6P24.2) WILD-TYPE" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
"AMP PEAK  8(6P24.2) WILD-TYPE"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "AMP PEAK  8(6P24.2) MUTATED" "AMP PEAK  8(6P24.2) WILD-TYPE" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"AMP PEAK  8(6P24.2) WILD-TYPE" "AMP PEAK  8(6P24.2) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"AMP PEAK  8(6P24.2) WILD-TYPE"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"AMP PEAK  8(6P24.2) WILD-TYPE" "AMP PEAK  8(6P24.2) WILD-TYPE" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "AMP PEAK  8(6P24.2) MUTATED" "AMP PEAK  8(6P24.2) WILD-TYPE" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
"AMP PEAK  8(6P24.2) WILD-TYPE" "AMP PEAK  8(6P24.2) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "AMP PEAK  8(6P24.2) MUTATED" "AMP PEAK  8(6P24.2) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "AMP PEAK  8(6P24.2) MUTATED" "AMP PEAK  8(6P24.2) WILD-TYPE" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
"AMP PEAK  8(6P24.2) WILD-TYPE"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "AMP PEAK  8(6P24.2) MUTATED" "AMP PEAK  8(6P24.2) WILD-TYPE" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"AMP PEAK  8(6P24.2) WILD-TYPE" "AMP PEAK  8(6P24.2) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"AMP PEAK  8(6P24.2) WILD-TYPE"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"AMP PEAK  8(6P24.2) WILD-TYPE" "AMP PEAK  8(6P24.2) WILD-TYPE" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "AMP PEAK  8(6P24.2) MUTATED" "AMP PEAK  8(6P24.2) WILD-TYPE" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
"AMP PEAK  8(6P24.2) WILD-TYPE" "AMP PEAK  8(6P24.2) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "AMP PEAK  8(6P24.2) MUTATED" "AMP PEAK  8(6P24.2) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "AMP PEAK  8(6P24.2) MUTATED" "AMP PEAK  8(6P24.2) WILD-TYPE" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
"AMP PEAK  8(6P24.2) WILD-TYPE"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "AMP PEAK  8(6P24.2) MUTATED" "AMP PEAK  8(6P24.2) WILD-TYPE" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"AMP PEAK  8(6P24.2) WILD-TYPE" "AMP PEAK  8(6P24.2) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "AMP PEAK  8(6P24.2) MUTATED"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"AMP PEAK  8(6P24.2) WILD-TYPE"   "AMP PEAK  8(6P24.2) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"AMP PEAK  8(6P24.2) WILD-TYPE" "AMP PEAK  8(6P24.2) WILD-TYPE" 
[1] "hr=" "1.7"
D8V2, continuous

Clustering(9) Variable = AMP PEAK  9(8P11.21) MUTATION ANALYSIS
D9V1, survival
                                sevent
clus2                             0  1
  AMP PEAK  9(8P11.21) MUTATED    8 10
  AMP PEAK  9(8P11.21) WILD-TYPE  5  9
  AMP PEAK  9(8P11.21) MUTATED AMP PEAK  9(8P11.21) WILD-TYPE 
                            18                             14 
  AMP PEAK  9(8P11.21) MUTATED AMP PEAK  9(8P11.21) WILD-TYPE 
                            10                              9 
$`AMP PEAK  9(8P11.21) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RT 
       52.27         4.64        47.31         4.87        24.00        69.63 
TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PO 
       50.17        14.70        11.87        26.63        16.34        14.40 
TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-NG-A4VW TCGA-QM-A5NM 
       74.33         3.72         6.64        85.35        31.17         5.42 

$`AMP PEAK  9(8P11.21) WILD-TYPE`
TCGA-N5-A4RJ TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PN 
       18.08        22.52        29.95        59.70        13.71        13.94 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QX TCGA-ND-A4W6 TCGA-ND-A4WA 
        7.20         4.77         9.70        27.39        10.42        23.47 
TCGA-ND-A4WC TCGA-ND-A4WF 
       15.16         5.49 

  AMP PEAK  9(8P11.21) MUTATED AMP PEAK  9(8P11.21) WILD-TYPE 
                          3.72                           4.77 
  AMP PEAK  9(8P11.21) MUTATED AMP PEAK  9(8P11.21) WILD-TYPE 
                         85.35                          59.70 
  AMP PEAK  9(8P11.21) MUTATED AMP PEAK  9(8P11.21) WILD-TYPE 
                         20.17                          14.55 
[1] "3.7 - 85.3 (20.2)" "4.8 - 59.7 (14.6)"
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "AMP PEAK  9(8P11.21) MUTATED"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "AMP PEAK  9(8P11.21) MUTATED" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "AMP PEAK  9(8P11.21) MUTATED"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"AMP PEAK  9(8P11.21) WILD-TYPE" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "AMP PEAK  9(8P11.21) MUTATED"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"AMP PEAK  9(8P11.21) WILD-TYPE"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "AMP PEAK  9(8P11.21) MUTATED"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"AMP PEAK  9(8P11.21) WILD-TYPE"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"AMP PEAK  9(8P11.21) WILD-TYPE"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"AMP PEAK  9(8P11.21) WILD-TYPE" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"AMP PEAK  9(8P11.21) WILD-TYPE"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"AMP PEAK  9(8P11.21) WILD-TYPE"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "AMP PEAK  9(8P11.21) MUTATED"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK  9(8P11.21) WILD-TYPE" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK  9(8P11.21) WILD-TYPE" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
  "AMP PEAK  9(8P11.21) MUTATED"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "AMP PEAK  9(8P11.21) MUTATED"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "AMP PEAK  9(8P11.21) MUTATED" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "AMP PEAK  9(8P11.21) MUTATED"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"AMP PEAK  9(8P11.21) WILD-TYPE" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "AMP PEAK  9(8P11.21) MUTATED"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"AMP PEAK  9(8P11.21) WILD-TYPE"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "AMP PEAK  9(8P11.21) MUTATED"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"AMP PEAK  9(8P11.21) WILD-TYPE"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"AMP PEAK  9(8P11.21) WILD-TYPE"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"AMP PEAK  9(8P11.21) WILD-TYPE" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"AMP PEAK  9(8P11.21) WILD-TYPE"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"AMP PEAK  9(8P11.21) WILD-TYPE"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "AMP PEAK  9(8P11.21) MUTATED"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK  9(8P11.21) WILD-TYPE" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK  9(8P11.21) WILD-TYPE" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
  "AMP PEAK  9(8P11.21) MUTATED"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "AMP PEAK  9(8P11.21) MUTATED"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "AMP PEAK  9(8P11.21) MUTATED" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "AMP PEAK  9(8P11.21) MUTATED"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"AMP PEAK  9(8P11.21) WILD-TYPE" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "AMP PEAK  9(8P11.21) MUTATED"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"AMP PEAK  9(8P11.21) WILD-TYPE"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "AMP PEAK  9(8P11.21) MUTATED"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"AMP PEAK  9(8P11.21) WILD-TYPE"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"AMP PEAK  9(8P11.21) WILD-TYPE"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"AMP PEAK  9(8P11.21) WILD-TYPE" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"AMP PEAK  9(8P11.21) WILD-TYPE"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"AMP PEAK  9(8P11.21) WILD-TYPE"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "AMP PEAK  9(8P11.21) MUTATED"   "AMP PEAK  9(8P11.21) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK  9(8P11.21) WILD-TYPE" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK  9(8P11.21) WILD-TYPE" "AMP PEAK  9(8P11.21) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
  "AMP PEAK  9(8P11.21) MUTATED"   "AMP PEAK  9(8P11.21) MUTATED" 
[1] "hr=" "1.7"
D9V2, continuous

Clustering(10) Variable = AMP PEAK 10(8Q11.23) MUTATION ANALYSIS
D10V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 10(8Q11.23) MUTATED   10 11
  AMP PEAK 10(8Q11.23) WILD-TYPE  3  8
  AMP PEAK 10(8Q11.23) MUTATED AMP PEAK 10(8Q11.23) WILD-TYPE 
                            21                             11 
  AMP PEAK 10(8Q11.23) MUTATED AMP PEAK 10(8Q11.23) WILD-TYPE 
                            11                              8 
$`AMP PEAK 10(8Q11.23) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RU 
       52.27         4.64        47.31         4.87        24.00        50.17 
TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PO 
       59.70        14.70        11.87        26.63        16.34        14.40 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A5I1 
        7.20         4.77        74.33        27.39         3.72        85.35 
TCGA-ND-A4W6 TCGA-NG-A4VW TCGA-QM-A5NM 
       10.42        31.17         5.42 

$`AMP PEAK 10(8Q11.23) WILD-TYPE`
TCGA-N5-A4RJ TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N8-A4PL TCGA-N8-A4PN 
       18.08        22.52        29.95        69.63        13.71        13.94 
TCGA-N8-A56S TCGA-NA-A4R1 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
        9.70         6.64        23.47        15.16         5.49 

  AMP PEAK 10(8Q11.23) MUTATED AMP PEAK 10(8Q11.23) WILD-TYPE 
                          3.72                           5.49 
  AMP PEAK 10(8Q11.23) MUTATED AMP PEAK 10(8Q11.23) WILD-TYPE 
                         85.35                          69.63 
  AMP PEAK 10(8Q11.23) MUTATED AMP PEAK 10(8Q11.23) WILD-TYPE 
                         16.34                          15.16 
[1] "3.7 - 85.3 (16.3)" "5.5 - 69.6 (15.2)"
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "AMP PEAK 10(8Q11.23) MUTATED"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "AMP PEAK 10(8Q11.23) MUTATED" "AMP PEAK 10(8Q11.23) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "AMP PEAK 10(8Q11.23) MUTATED"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"AMP PEAK 10(8Q11.23) WILD-TYPE" "AMP PEAK 10(8Q11.23) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"AMP PEAK 10(8Q11.23) WILD-TYPE"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "AMP PEAK 10(8Q11.23) MUTATED"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "AMP PEAK 10(8Q11.23) MUTATED"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"AMP PEAK 10(8Q11.23) WILD-TYPE"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"AMP PEAK 10(8Q11.23) WILD-TYPE"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "AMP PEAK 10(8Q11.23) MUTATED"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"AMP PEAK 10(8Q11.23) WILD-TYPE"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "AMP PEAK 10(8Q11.23) MUTATED"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"AMP PEAK 10(8Q11.23) WILD-TYPE"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 10(8Q11.23) MUTATED" "AMP PEAK 10(8Q11.23) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 10(8Q11.23) WILD-TYPE" "AMP PEAK 10(8Q11.23) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
  "AMP PEAK 10(8Q11.23) MUTATED"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "AMP PEAK 10(8Q11.23) MUTATED"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "AMP PEAK 10(8Q11.23) MUTATED" "AMP PEAK 10(8Q11.23) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "AMP PEAK 10(8Q11.23) MUTATED"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"AMP PEAK 10(8Q11.23) WILD-TYPE" "AMP PEAK 10(8Q11.23) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"AMP PEAK 10(8Q11.23) WILD-TYPE"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "AMP PEAK 10(8Q11.23) MUTATED"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "AMP PEAK 10(8Q11.23) MUTATED"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"AMP PEAK 10(8Q11.23) WILD-TYPE"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"AMP PEAK 10(8Q11.23) WILD-TYPE"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "AMP PEAK 10(8Q11.23) MUTATED"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"AMP PEAK 10(8Q11.23) WILD-TYPE"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "AMP PEAK 10(8Q11.23) MUTATED"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"AMP PEAK 10(8Q11.23) WILD-TYPE"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 10(8Q11.23) MUTATED" "AMP PEAK 10(8Q11.23) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 10(8Q11.23) WILD-TYPE" "AMP PEAK 10(8Q11.23) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
  "AMP PEAK 10(8Q11.23) MUTATED"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "AMP PEAK 10(8Q11.23) MUTATED"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "AMP PEAK 10(8Q11.23) MUTATED" "AMP PEAK 10(8Q11.23) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "AMP PEAK 10(8Q11.23) MUTATED"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"AMP PEAK 10(8Q11.23) WILD-TYPE" "AMP PEAK 10(8Q11.23) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"AMP PEAK 10(8Q11.23) WILD-TYPE"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "AMP PEAK 10(8Q11.23) MUTATED"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "AMP PEAK 10(8Q11.23) MUTATED"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"AMP PEAK 10(8Q11.23) WILD-TYPE"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"AMP PEAK 10(8Q11.23) WILD-TYPE"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "AMP PEAK 10(8Q11.23) MUTATED"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"AMP PEAK 10(8Q11.23) WILD-TYPE"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "AMP PEAK 10(8Q11.23) MUTATED"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"AMP PEAK 10(8Q11.23) WILD-TYPE"   "AMP PEAK 10(8Q11.23) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 10(8Q11.23) MUTATED" "AMP PEAK 10(8Q11.23) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 10(8Q11.23) WILD-TYPE" "AMP PEAK 10(8Q11.23) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
  "AMP PEAK 10(8Q11.23) MUTATED"   "AMP PEAK 10(8Q11.23) MUTATED" 
[1] "hr=" "1.8"
D10V2, continuous

Clustering(11) Variable = AMP PEAK 11(8Q24.21) MUTATION ANALYSIS
D11V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 11(8Q24.21) MUTATED   10 13
  AMP PEAK 11(8Q24.21) WILD-TYPE  3  6
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                            23                              9 
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                            13                              6 
$`AMP PEAK 11(8Q24.21) MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV 
        4.64        47.31         4.87        69.63        50.17        59.70 
TCGA-N5-A59E TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
       14.70        26.63        16.34        14.40         7.20         4.77 
TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 
        9.70        74.33        27.39         3.72         6.64        85.35 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
       10.42        23.47         5.49        31.17         5.42 

$`AMP PEAK 11(8Q24.21) WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A59F 
       52.27        18.08        24.00        22.52        29.95        11.87 
TCGA-N8-A4PL TCGA-N8-A4PN TCGA-ND-A4WC 
       13.71        13.94        15.16 

  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                          3.72                          11.87 
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                         85.35                          52.27 
  AMP PEAK 11(8Q24.21) MUTATED AMP PEAK 11(8Q24.21) WILD-TYPE 
                         14.70                          18.08 
[1] "3.7 - 85.3 (14.7)"  "11.9 - 52.3 (18.1)"
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "AMP PEAK 11(8Q24.21) MUTATED" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"AMP PEAK 11(8Q24.21) WILD-TYPE" "AMP PEAK 11(8Q24.21) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 11(8Q24.21) WILD-TYPE"   "AMP PEAK 11(8Q24.21) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
  "AMP PEAK 11(8Q24.21) MUTATED"   "AMP PEAK 11(8Q24.21) MUTATED" 
[1] "hr=" "1.2"
D11V2, continuous

Clustering(12) Variable = AMP PEAK 12(8Q24.21) MUTATION ANALYSIS
D12V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 12(8Q24.21) MUTATED    9 12
  AMP PEAK 12(8Q24.21) WILD-TYPE  4  7
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                            21                             11 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                            12                              7 
$`AMP PEAK 12(8Q24.21) MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV 
        4.64        47.31         4.87        69.63        50.17        59.70 
TCGA-N5-A59E TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
       14.70        26.63        16.34        14.40         7.20         4.77 
TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA 
       27.39         3.72         6.64        85.35        10.42        23.47 
TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
        5.49        31.17         5.42 

$`AMP PEAK 12(8Q24.21) WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A59F 
       52.27        18.08        24.00        22.52        29.95        11.87 
TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A56S TCGA-NA-A4QW TCGA-ND-A4WC 
       13.71        13.94         9.70        74.33        15.16 

  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                          3.72                           9.70 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                         85.35                          74.33 
  AMP PEAK 12(8Q24.21) MUTATED AMP PEAK 12(8Q24.21) WILD-TYPE 
                         14.70                          18.08 
[1] "3.7 - 85.3 (14.7)" "9.7 - 74.3 (18.1)"
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"AMP PEAK 12(8Q24.21) WILD-TYPE" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"AMP PEAK 12(8Q24.21) WILD-TYPE" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"AMP PEAK 12(8Q24.21) WILD-TYPE" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"AMP PEAK 12(8Q24.21) WILD-TYPE" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "AMP PEAK 12(8Q24.21) MUTATED" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"AMP PEAK 12(8Q24.21) WILD-TYPE" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"AMP PEAK 12(8Q24.21) WILD-TYPE" "AMP PEAK 12(8Q24.21) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 12(8Q24.21) WILD-TYPE"   "AMP PEAK 12(8Q24.21) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
  "AMP PEAK 12(8Q24.21) MUTATED"   "AMP PEAK 12(8Q24.21) MUTATED" 
[1] "hr=" "1"  
D12V2, continuous

Clustering(13) Variable = AMP PEAK 13(10Q22.2) MUTATION ANALYSIS
D13V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 13(10Q22.2) MUTATED    7  8
  AMP PEAK 13(10Q22.2) WILD-TYPE  6 11
  AMP PEAK 13(10Q22.2) MUTATED AMP PEAK 13(10Q22.2) WILD-TYPE 
                            15                             17 
  AMP PEAK 13(10Q22.2) MUTATED AMP PEAK 13(10Q22.2) WILD-TYPE 
                             8                             11 
$`AMP PEAK 13(10Q22.2) MUTATED`
TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI 
       18.08        24.00        59.70        14.70        11.87        26.63 
TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-NA-A4QW TCGA-NA-A5I1 
       13.71        13.94        14.40         4.77        74.33        85.35 
TCGA-ND-A4WA TCGA-ND-A4WF TCGA-NG-A4VW 
       23.47         5.49        31.17 

$`AMP PEAK 13(10Q22.2) WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RS 
       52.27         4.64        47.31         4.87        22.52        29.95 
TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N8-A4PM TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QX 
       69.63        50.17        16.34         7.20         9.70        27.39 
TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-QM-A5NM 
        3.72         6.64        10.42        15.16         5.42 

  AMP PEAK 13(10Q22.2) MUTATED AMP PEAK 13(10Q22.2) WILD-TYPE 
                          4.77                           3.72 
  AMP PEAK 13(10Q22.2) MUTATED AMP PEAK 13(10Q22.2) WILD-TYPE 
                         85.35                          69.63 
  AMP PEAK 13(10Q22.2) MUTATED AMP PEAK 13(10Q22.2) WILD-TYPE 
                         18.08                          15.16 
[1] "4.8 - 85.3 (18.1)" "3.7 - 69.6 (15.2)"
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"AMP PEAK 13(10Q22.2) WILD-TYPE" "AMP PEAK 13(10Q22.2) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"AMP PEAK 13(10Q22.2) WILD-TYPE" "AMP PEAK 13(10Q22.2) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"AMP PEAK 13(10Q22.2) WILD-TYPE" "AMP PEAK 13(10Q22.2) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "AMP PEAK 13(10Q22.2) MUTATED"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "AMP PEAK 13(10Q22.2) MUTATED"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "AMP PEAK 13(10Q22.2) MUTATED" "AMP PEAK 13(10Q22.2) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "AMP PEAK 13(10Q22.2) MUTATED"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"AMP PEAK 13(10Q22.2) WILD-TYPE" "AMP PEAK 13(10Q22.2) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
  "AMP PEAK 13(10Q22.2) MUTATED" "AMP PEAK 13(10Q22.2) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"AMP PEAK 13(10Q22.2) WILD-TYPE" "AMP PEAK 13(10Q22.2) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"AMP PEAK 13(10Q22.2) WILD-TYPE" "AMP PEAK 13(10Q22.2) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"AMP PEAK 13(10Q22.2) WILD-TYPE" "AMP PEAK 13(10Q22.2) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "AMP PEAK 13(10Q22.2) MUTATED"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "AMP PEAK 13(10Q22.2) MUTATED"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "AMP PEAK 13(10Q22.2) MUTATED" "AMP PEAK 13(10Q22.2) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "AMP PEAK 13(10Q22.2) MUTATED"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"AMP PEAK 13(10Q22.2) WILD-TYPE" "AMP PEAK 13(10Q22.2) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
  "AMP PEAK 13(10Q22.2) MUTATED" "AMP PEAK 13(10Q22.2) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"AMP PEAK 13(10Q22.2) WILD-TYPE" "AMP PEAK 13(10Q22.2) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"AMP PEAK 13(10Q22.2) WILD-TYPE" "AMP PEAK 13(10Q22.2) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"AMP PEAK 13(10Q22.2) WILD-TYPE" "AMP PEAK 13(10Q22.2) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "AMP PEAK 13(10Q22.2) MUTATED"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "AMP PEAK 13(10Q22.2) MUTATED"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "AMP PEAK 13(10Q22.2) MUTATED" "AMP PEAK 13(10Q22.2) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "AMP PEAK 13(10Q22.2) MUTATED"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"AMP PEAK 13(10Q22.2) WILD-TYPE" "AMP PEAK 13(10Q22.2) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 13(10Q22.2) WILD-TYPE"   "AMP PEAK 13(10Q22.2) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
  "AMP PEAK 13(10Q22.2) MUTATED" "AMP PEAK 13(10Q22.2) WILD-TYPE" 
[1] "hr=" "1.4"
D13V2, continuous

Clustering(14) Variable = AMP PEAK 14(11Q13.1) MUTATION ANALYSIS
D14V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 14(11Q13.1) MUTATED    6  4
  AMP PEAK 14(11Q13.1) WILD-TYPE  7 15
  AMP PEAK 14(11Q13.1) MUTATED AMP PEAK 14(11Q13.1) WILD-TYPE 
                            10                             22 
  AMP PEAK 14(11Q13.1) MUTATED AMP PEAK 14(11Q13.1) WILD-TYPE 
                             4                             15 
$`AMP PEAK 14(11Q13.1) MUTATED`
TCGA-N5-A4RM TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N8-A4PN TCGA-N8-A4PP 
        4.87        69.63        50.17        59.70        13.94         7.20 
TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A5I1 TCGA-ND-A4WF 
        9.70        74.33        85.35         5.49 

$`AMP PEAK 14(11Q13.1) WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RO 
       52.27         4.64        47.31        18.08        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM 
       29.95        14.70        11.87        26.63        13.71        16.34 
TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-ND-A4W6 
       14.40         4.77        27.39         3.72         6.64        10.42 
TCGA-ND-A4WA TCGA-ND-A4WC TCGA-NG-A4VW TCGA-QM-A5NM 
       23.47        15.16        31.17         5.42 

  AMP PEAK 14(11Q13.1) MUTATED AMP PEAK 14(11Q13.1) WILD-TYPE 
                          4.87                           3.72 
  AMP PEAK 14(11Q13.1) MUTATED AMP PEAK 14(11Q13.1) WILD-TYPE 
                         85.35                          52.27 
  AMP PEAK 14(11Q13.1) MUTATED AMP PEAK 14(11Q13.1) WILD-TYPE 
                        32.055                         15.750 
[1] "4.9 - 85.3 (32.1)" "3.7 - 52.3 (15.8)"
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "AMP PEAK 14(11Q13.1) MUTATED" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "AMP PEAK 14(11Q13.1) MUTATED"   "AMP PEAK 14(11Q13.1) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "AMP PEAK 14(11Q13.1) MUTATED" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "AMP PEAK 14(11Q13.1) MUTATED" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "AMP PEAK 14(11Q13.1) MUTATED" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "AMP PEAK 14(11Q13.1) MUTATED"   "AMP PEAK 14(11Q13.1) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"AMP PEAK 14(11Q13.1) WILD-TYPE"   "AMP PEAK 14(11Q13.1) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 14(11Q13.1) WILD-TYPE"   "AMP PEAK 14(11Q13.1) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "AMP PEAK 14(11Q13.1) MUTATED" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "AMP PEAK 14(11Q13.1) MUTATED"   "AMP PEAK 14(11Q13.1) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "AMP PEAK 14(11Q13.1) MUTATED" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "AMP PEAK 14(11Q13.1) MUTATED" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "AMP PEAK 14(11Q13.1) MUTATED" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "AMP PEAK 14(11Q13.1) MUTATED"   "AMP PEAK 14(11Q13.1) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"AMP PEAK 14(11Q13.1) WILD-TYPE"   "AMP PEAK 14(11Q13.1) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 14(11Q13.1) WILD-TYPE"   "AMP PEAK 14(11Q13.1) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "AMP PEAK 14(11Q13.1) MUTATED" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "AMP PEAK 14(11Q13.1) MUTATED"   "AMP PEAK 14(11Q13.1) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "AMP PEAK 14(11Q13.1) MUTATED" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "AMP PEAK 14(11Q13.1) MUTATED" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "AMP PEAK 14(11Q13.1) MUTATED" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "AMP PEAK 14(11Q13.1) MUTATED"   "AMP PEAK 14(11Q13.1) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"AMP PEAK 14(11Q13.1) WILD-TYPE"   "AMP PEAK 14(11Q13.1) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 14(11Q13.1) WILD-TYPE"   "AMP PEAK 14(11Q13.1) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"AMP PEAK 14(11Q13.1) WILD-TYPE" "AMP PEAK 14(11Q13.1) WILD-TYPE" 
[1] "hr=" "3"  
D14V2, continuous

Clustering(15) Variable = AMP PEAK 15(12Q12) MUTATION ANALYSIS
D15V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 15(12Q12) MUTATED    6  7
  AMP PEAK 15(12Q12) WILD-TYPE  7 12
  AMP PEAK 15(12Q12) MUTATED AMP PEAK 15(12Q12) WILD-TYPE 
                          13                           19 
  AMP PEAK 15(12Q12) MUTATED AMP PEAK 15(12Q12) WILD-TYPE 
                           7                           12 
$`AMP PEAK 15(12Q12) MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59E 
        4.64         4.87        22.52        69.63        50.17        14.70 
TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QW 
       16.34        13.94        14.40         7.20         9.70        74.33 
TCGA-NA-A4R1 
        6.64 

$`AMP PEAK 15(12Q12) WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RS TCGA-N5-A4RV 
       52.27        47.31        18.08        24.00        29.95        59.70 
TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PQ TCGA-NA-A4QX TCGA-NA-A4QY 
       11.87        26.63        13.71         4.77        27.39         3.72 
TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW 
       85.35        10.42        23.47        15.16         5.49        31.17 
TCGA-QM-A5NM 
        5.42 

  AMP PEAK 15(12Q12) MUTATED AMP PEAK 15(12Q12) WILD-TYPE 
                        4.64                         3.72 
  AMP PEAK 15(12Q12) MUTATED AMP PEAK 15(12Q12) WILD-TYPE 
                       74.33                        85.35 
  AMP PEAK 15(12Q12) MUTATED AMP PEAK 15(12Q12) WILD-TYPE 
                       14.40                        23.47 
[1] "4.6 - 74.3 (14.4)" "3.7 - 85.3 (23.5)"
                  TCGA-N5-A4RA                   TCGA-N5-A4RD 
"AMP PEAK 15(12Q12) WILD-TYPE"   "AMP PEAK 15(12Q12) MUTATED" 
                  TCGA-N5-A4RF                   TCGA-N5-A4RJ 
"AMP PEAK 15(12Q12) WILD-TYPE" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-N5-A4RM                   TCGA-N5-A4RN 
  "AMP PEAK 15(12Q12) MUTATED" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-N5-A4RO                   TCGA-N5-A4RS 
  "AMP PEAK 15(12Q12) MUTATED" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-N5-A4RT                   TCGA-N5-A4RU 
  "AMP PEAK 15(12Q12) MUTATED"   "AMP PEAK 15(12Q12) MUTATED" 
                  TCGA-N5-A4RV                   TCGA-N5-A59E 
"AMP PEAK 15(12Q12) WILD-TYPE"   "AMP PEAK 15(12Q12) MUTATED" 
                  TCGA-N5-A59F                   TCGA-N8-A4PI 
"AMP PEAK 15(12Q12) WILD-TYPE" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-N8-A4PL                   TCGA-N8-A4PM 
"AMP PEAK 15(12Q12) WILD-TYPE"   "AMP PEAK 15(12Q12) MUTATED" 
                  TCGA-N8-A4PN                   TCGA-N8-A4PO 
  "AMP PEAK 15(12Q12) MUTATED"   "AMP PEAK 15(12Q12) MUTATED" 
                  TCGA-N8-A4PP                   TCGA-N8-A4PQ 
  "AMP PEAK 15(12Q12) MUTATED" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-N8-A56S                   TCGA-NA-A4QW 
  "AMP PEAK 15(12Q12) MUTATED"   "AMP PEAK 15(12Q12) MUTATED" 
                  TCGA-NA-A4QX                   TCGA-NA-A4QY 
"AMP PEAK 15(12Q12) WILD-TYPE" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-NA-A4R1                   TCGA-NA-A5I1 
  "AMP PEAK 15(12Q12) MUTATED" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-ND-A4W6                   TCGA-ND-A4WA 
"AMP PEAK 15(12Q12) WILD-TYPE" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-ND-A4WC                   TCGA-ND-A4WF 
"AMP PEAK 15(12Q12) WILD-TYPE" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-NG-A4VW                   TCGA-QM-A5NM 
"AMP PEAK 15(12Q12) WILD-TYPE" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-N5-A4RA                   TCGA-N5-A4RD 
"AMP PEAK 15(12Q12) WILD-TYPE"   "AMP PEAK 15(12Q12) MUTATED" 
                  TCGA-N5-A4RF                   TCGA-N5-A4RJ 
"AMP PEAK 15(12Q12) WILD-TYPE" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-N5-A4RM                   TCGA-N5-A4RN 
  "AMP PEAK 15(12Q12) MUTATED" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-N5-A4RO                   TCGA-N5-A4RS 
  "AMP PEAK 15(12Q12) MUTATED" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-N5-A4RT                   TCGA-N5-A4RU 
  "AMP PEAK 15(12Q12) MUTATED"   "AMP PEAK 15(12Q12) MUTATED" 
                  TCGA-N5-A4RV                   TCGA-N5-A59E 
"AMP PEAK 15(12Q12) WILD-TYPE"   "AMP PEAK 15(12Q12) MUTATED" 
                  TCGA-N5-A59F                   TCGA-N8-A4PI 
"AMP PEAK 15(12Q12) WILD-TYPE" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-N8-A4PL                   TCGA-N8-A4PM 
"AMP PEAK 15(12Q12) WILD-TYPE"   "AMP PEAK 15(12Q12) MUTATED" 
                  TCGA-N8-A4PN                   TCGA-N8-A4PO 
  "AMP PEAK 15(12Q12) MUTATED"   "AMP PEAK 15(12Q12) MUTATED" 
                  TCGA-N8-A4PP                   TCGA-N8-A4PQ 
  "AMP PEAK 15(12Q12) MUTATED" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-N8-A56S                   TCGA-NA-A4QW 
  "AMP PEAK 15(12Q12) MUTATED"   "AMP PEAK 15(12Q12) MUTATED" 
                  TCGA-NA-A4QX                   TCGA-NA-A4QY 
"AMP PEAK 15(12Q12) WILD-TYPE" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-NA-A4R1                   TCGA-NA-A5I1 
  "AMP PEAK 15(12Q12) MUTATED" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-ND-A4W6                   TCGA-ND-A4WA 
"AMP PEAK 15(12Q12) WILD-TYPE" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-ND-A4WC                   TCGA-ND-A4WF 
"AMP PEAK 15(12Q12) WILD-TYPE" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-NG-A4VW                   TCGA-QM-A5NM 
"AMP PEAK 15(12Q12) WILD-TYPE" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-N5-A4RA                   TCGA-N5-A4RD 
"AMP PEAK 15(12Q12) WILD-TYPE"   "AMP PEAK 15(12Q12) MUTATED" 
                  TCGA-N5-A4RF                   TCGA-N5-A4RJ 
"AMP PEAK 15(12Q12) WILD-TYPE" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-N5-A4RM                   TCGA-N5-A4RN 
  "AMP PEAK 15(12Q12) MUTATED" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-N5-A4RO                   TCGA-N5-A4RS 
  "AMP PEAK 15(12Q12) MUTATED" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-N5-A4RT                   TCGA-N5-A4RU 
  "AMP PEAK 15(12Q12) MUTATED"   "AMP PEAK 15(12Q12) MUTATED" 
                  TCGA-N5-A4RV                   TCGA-N5-A59E 
"AMP PEAK 15(12Q12) WILD-TYPE"   "AMP PEAK 15(12Q12) MUTATED" 
                  TCGA-N5-A59F                   TCGA-N8-A4PI 
"AMP PEAK 15(12Q12) WILD-TYPE" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-N8-A4PL                   TCGA-N8-A4PM 
"AMP PEAK 15(12Q12) WILD-TYPE"   "AMP PEAK 15(12Q12) MUTATED" 
                  TCGA-N8-A4PN                   TCGA-N8-A4PO 
  "AMP PEAK 15(12Q12) MUTATED"   "AMP PEAK 15(12Q12) MUTATED" 
                  TCGA-N8-A4PP                   TCGA-N8-A4PQ 
  "AMP PEAK 15(12Q12) MUTATED" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-N8-A56S                   TCGA-NA-A4QW 
  "AMP PEAK 15(12Q12) MUTATED"   "AMP PEAK 15(12Q12) MUTATED" 
                  TCGA-NA-A4QX                   TCGA-NA-A4QY 
"AMP PEAK 15(12Q12) WILD-TYPE" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-NA-A4R1                   TCGA-NA-A5I1 
  "AMP PEAK 15(12Q12) MUTATED" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-ND-A4W6                   TCGA-ND-A4WA 
"AMP PEAK 15(12Q12) WILD-TYPE" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-ND-A4WC                   TCGA-ND-A4WF 
"AMP PEAK 15(12Q12) WILD-TYPE" "AMP PEAK 15(12Q12) WILD-TYPE" 
                  TCGA-NG-A4VW                   TCGA-QM-A5NM 
"AMP PEAK 15(12Q12) WILD-TYPE" "AMP PEAK 15(12Q12) WILD-TYPE" 
[1] "hr=" "1"  
D15V2, continuous

Clustering(16) Variable = AMP PEAK 16(12Q15) MUTATION ANALYSIS
D16V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 16(12Q15) MUTATED    3  6
  AMP PEAK 16(12Q15) WILD-TYPE 10 13
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                           9                           23 
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                           6                           13 
$`AMP PEAK 16(12Q15) MUTATED`
TCGA-N5-A4RM TCGA-N5-A4RT TCGA-N5-A59E TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PP 
        4.87        69.63        14.70        13.71        16.34         7.20 
TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WF 
        9.70        10.42         5.49 

$`AMP PEAK 16(12Q15) WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RO 
       52.27         4.64        47.31        18.08        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PN 
       29.95        50.17        59.70        11.87        26.63        13.94 
TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 
       14.40         4.77        74.33        27.39         3.72         6.64 
TCGA-NA-A5I1 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-NG-A4VW TCGA-QM-A5NM 
       85.35        23.47        15.16        31.17         5.42 

  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                        4.87                         3.72 
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                       69.63                        85.35 
  AMP PEAK 16(12Q15) MUTATED AMP PEAK 16(12Q15) WILD-TYPE 
                       10.42                        23.47 
[1] "4.9 - 69.6 (10.4)" "3.7 - 85.3 (23.5)"
                  TCGA-N5-A4RA                   TCGA-N5-A4RD 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N5-A4RF                   TCGA-N5-A4RJ 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N5-A4RM                   TCGA-N5-A4RN 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N5-A4RO                   TCGA-N5-A4RS 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N5-A4RT                   TCGA-N5-A4RU 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N5-A4RV                   TCGA-N5-A59E 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-N5-A59F                   TCGA-N8-A4PI 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N8-A4PL                   TCGA-N8-A4PM 
  "AMP PEAK 16(12Q15) MUTATED"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-N8-A4PN                   TCGA-N8-A4PO 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N8-A4PP                   TCGA-N8-A4PQ 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N8-A56S                   TCGA-NA-A4QW 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-NA-A4QX                   TCGA-NA-A4QY 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-NA-A4R1                   TCGA-NA-A5I1 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-ND-A4W6                   TCGA-ND-A4WA 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-ND-A4WC                   TCGA-ND-A4WF 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-NG-A4VW                   TCGA-QM-A5NM 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N5-A4RA                   TCGA-N5-A4RD 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N5-A4RF                   TCGA-N5-A4RJ 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N5-A4RM                   TCGA-N5-A4RN 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N5-A4RO                   TCGA-N5-A4RS 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N5-A4RT                   TCGA-N5-A4RU 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N5-A4RV                   TCGA-N5-A59E 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-N5-A59F                   TCGA-N8-A4PI 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N8-A4PL                   TCGA-N8-A4PM 
  "AMP PEAK 16(12Q15) MUTATED"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-N8-A4PN                   TCGA-N8-A4PO 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N8-A4PP                   TCGA-N8-A4PQ 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N8-A56S                   TCGA-NA-A4QW 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-NA-A4QX                   TCGA-NA-A4QY 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-NA-A4R1                   TCGA-NA-A5I1 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-ND-A4W6                   TCGA-ND-A4WA 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-ND-A4WC                   TCGA-ND-A4WF 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-NG-A4VW                   TCGA-QM-A5NM 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N5-A4RA                   TCGA-N5-A4RD 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N5-A4RF                   TCGA-N5-A4RJ 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N5-A4RM                   TCGA-N5-A4RN 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N5-A4RO                   TCGA-N5-A4RS 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N5-A4RT                   TCGA-N5-A4RU 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N5-A4RV                   TCGA-N5-A59E 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-N5-A59F                   TCGA-N8-A4PI 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N8-A4PL                   TCGA-N8-A4PM 
  "AMP PEAK 16(12Q15) MUTATED"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-N8-A4PN                   TCGA-N8-A4PO 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N8-A4PP                   TCGA-N8-A4PQ 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-N8-A56S                   TCGA-NA-A4QW 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-NA-A4QX                   TCGA-NA-A4QY 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-NA-A4R1                   TCGA-NA-A5I1 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-ND-A4W6                   TCGA-ND-A4WA 
  "AMP PEAK 16(12Q15) MUTATED" "AMP PEAK 16(12Q15) WILD-TYPE" 
                  TCGA-ND-A4WC                   TCGA-ND-A4WF 
"AMP PEAK 16(12Q15) WILD-TYPE"   "AMP PEAK 16(12Q15) MUTATED" 
                  TCGA-NG-A4VW                   TCGA-QM-A5NM 
"AMP PEAK 16(12Q15) WILD-TYPE" "AMP PEAK 16(12Q15) WILD-TYPE" 
[1] "hr=" "2.2"
D16V2, continuous

Clustering(17) Variable = AMP PEAK 17(13Q31.3) MUTATION ANALYSIS
D17V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 17(13Q31.3) MUTATED    6  9
  AMP PEAK 17(13Q31.3) WILD-TYPE  7 10
  AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE 
                            15                             17 
  AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE 
                             9                             10 
$`AMP PEAK 17(13Q31.3) MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RV TCGA-N5-A59E 
        4.64        47.31        24.00        22.52        59.70        14.70 
TCGA-N5-A59F TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-NA-A4QW TCGA-NA-A4QX 
       11.87        13.71        16.34        13.94        74.33        27.39 
TCGA-NA-A4QY TCGA-ND-A4W6 TCGA-ND-A4WA 
        3.72        10.42        23.47 

$`AMP PEAK 17(13Q31.3) WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU 
       52.27        18.08         4.87        29.95        69.63        50.17 
TCGA-N8-A4PI TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4R1 
       26.63        14.40         7.20         4.77         9.70         6.64 
TCGA-NA-A5I1 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
       85.35        15.16         5.49        31.17         5.42 

  AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE 
                          3.72                           4.77 
  AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE 
                         74.33                          85.35 
  AMP PEAK 17(13Q31.3) MUTATED AMP PEAK 17(13Q31.3) WILD-TYPE 
                         16.34                          15.16 
[1] "3.7 - 74.3 (16.3)" "4.8 - 85.3 (15.2)"
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "AMP PEAK 17(13Q31.3) MUTATED" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"AMP PEAK 17(13Q31.3) WILD-TYPE"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 17(13Q31.3) MUTATED"   "AMP PEAK 17(13Q31.3) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"AMP PEAK 17(13Q31.3) WILD-TYPE" "AMP PEAK 17(13Q31.3) WILD-TYPE" 
[1] "hr=" "1.1"
D17V2, continuous

Clustering(18) Variable = AMP PEAK 18(16P11.2) MUTATION ANALYSIS
D18V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 18(16P11.2) MUTATED    4  9
  AMP PEAK 18(16P11.2) WILD-TYPE  9 10
  AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE 
                            13                             19 
  AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE 
                             9                             10 
$`AMP PEAK 18(16P11.2) MUTATED`
TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RU TCGA-N5-A59E TCGA-N8-A4PN 
       18.08         4.87        24.00        50.17        14.70        13.94 
TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-ND-A4WF 
        9.70        74.33        27.39         3.72         6.64         5.49 
TCGA-QM-A5NM 
        5.42 

$`AMP PEAK 18(16P11.2) WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT 
       52.27         4.64        47.31        22.52        29.95        69.63 
TCGA-N5-A4RV TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO 
       59.70        11.87        26.63        13.71        16.34        14.40 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC 
        7.20         4.77        85.35        10.42        23.47        15.16 
TCGA-NG-A4VW 
       31.17 

  AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE 
                          3.72                           4.64 
  AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE 
                         74.33                          85.35 
  AMP PEAK 18(16P11.2) MUTATED AMP PEAK 18(16P11.2) WILD-TYPE 
                         13.94                          22.52 
[1] "3.7 - 74.3 (13.9)" "4.6 - 85.3 (22.5)"
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "AMP PEAK 18(16P11.2) MUTATED"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "AMP PEAK 18(16P11.2) MUTATED"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "AMP PEAK 18(16P11.2) MUTATED"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "AMP PEAK 18(16P11.2) MUTATED"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "AMP PEAK 18(16P11.2) MUTATED"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "AMP PEAK 18(16P11.2) MUTATED"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "AMP PEAK 18(16P11.2) MUTATED"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "AMP PEAK 18(16P11.2) MUTATED"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "AMP PEAK 18(16P11.2) MUTATED"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "AMP PEAK 18(16P11.2) MUTATED" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK 18(16P11.2) WILD-TYPE" "AMP PEAK 18(16P11.2) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"AMP PEAK 18(16P11.2) WILD-TYPE"   "AMP PEAK 18(16P11.2) MUTATED" 
[1] "hr=" "1.9"
D18V2, continuous

Clustering(19) Variable = AMP PEAK 19(17Q12) MUTATION ANALYSIS
D19V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 19(17Q12) MUTATED    8 10
  AMP PEAK 19(17Q12) WILD-TYPE  5  9
  AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE 
                          18                           14 
  AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE 
                          10                            9 
$`AMP PEAK 19(17Q12) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV 
       52.27         4.64        18.08        69.63        50.17        59.70 
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ 
       26.63        13.71        16.34        13.94         7.20         4.77 
TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA 
       74.33         3.72         6.64        85.35        10.42        23.47 

$`AMP PEAK 19(17Q12) WILD-TYPE`
TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A59E 
       47.31         4.87        24.00        22.52        29.95        14.70 
TCGA-N5-A59F TCGA-N8-A4PO TCGA-N8-A56S TCGA-NA-A4QX TCGA-ND-A4WC TCGA-ND-A4WF 
       11.87        14.40         9.70        27.39        15.16         5.49 
TCGA-NG-A4VW TCGA-QM-A5NM 
       31.17         5.42 

  AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE 
                        3.72                         4.87 
  AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE 
                       85.35                        47.31 
  AMP PEAK 19(17Q12) MUTATED AMP PEAK 19(17Q12) WILD-TYPE 
                       17.21                        14.93 
[1] "3.7 - 85.3 (17.2)" "4.9 - 47.3 (14.9)"
                  TCGA-N5-A4RA                   TCGA-N5-A4RD 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N5-A4RF                   TCGA-N5-A4RJ 
"AMP PEAK 19(17Q12) WILD-TYPE"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N5-A4RM                   TCGA-N5-A4RN 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-N5-A4RO                   TCGA-N5-A4RS 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-N5-A4RT                   TCGA-N5-A4RU 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N5-A4RV                   TCGA-N5-A59E 
  "AMP PEAK 19(17Q12) MUTATED" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-N5-A59F                   TCGA-N8-A4PI 
"AMP PEAK 19(17Q12) WILD-TYPE"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N8-A4PL                   TCGA-N8-A4PM 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N8-A4PN                   TCGA-N8-A4PO 
  "AMP PEAK 19(17Q12) MUTATED" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-N8-A4PP                   TCGA-N8-A4PQ 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N8-A56S                   TCGA-NA-A4QW 
"AMP PEAK 19(17Q12) WILD-TYPE"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-NA-A4QX                   TCGA-NA-A4QY 
"AMP PEAK 19(17Q12) WILD-TYPE"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-NA-A4R1                   TCGA-NA-A5I1 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-ND-A4W6                   TCGA-ND-A4WA 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-ND-A4WC                   TCGA-ND-A4WF 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-NG-A4VW                   TCGA-QM-A5NM 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-N5-A4RA                   TCGA-N5-A4RD 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N5-A4RF                   TCGA-N5-A4RJ 
"AMP PEAK 19(17Q12) WILD-TYPE"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N5-A4RM                   TCGA-N5-A4RN 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-N5-A4RO                   TCGA-N5-A4RS 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-N5-A4RT                   TCGA-N5-A4RU 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N5-A4RV                   TCGA-N5-A59E 
  "AMP PEAK 19(17Q12) MUTATED" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-N5-A59F                   TCGA-N8-A4PI 
"AMP PEAK 19(17Q12) WILD-TYPE"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N8-A4PL                   TCGA-N8-A4PM 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N8-A4PN                   TCGA-N8-A4PO 
  "AMP PEAK 19(17Q12) MUTATED" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-N8-A4PP                   TCGA-N8-A4PQ 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N8-A56S                   TCGA-NA-A4QW 
"AMP PEAK 19(17Q12) WILD-TYPE"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-NA-A4QX                   TCGA-NA-A4QY 
"AMP PEAK 19(17Q12) WILD-TYPE"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-NA-A4R1                   TCGA-NA-A5I1 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-ND-A4W6                   TCGA-ND-A4WA 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-ND-A4WC                   TCGA-ND-A4WF 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-NG-A4VW                   TCGA-QM-A5NM 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-N5-A4RA                   TCGA-N5-A4RD 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N5-A4RF                   TCGA-N5-A4RJ 
"AMP PEAK 19(17Q12) WILD-TYPE"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N5-A4RM                   TCGA-N5-A4RN 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-N5-A4RO                   TCGA-N5-A4RS 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-N5-A4RT                   TCGA-N5-A4RU 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N5-A4RV                   TCGA-N5-A59E 
  "AMP PEAK 19(17Q12) MUTATED" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-N5-A59F                   TCGA-N8-A4PI 
"AMP PEAK 19(17Q12) WILD-TYPE"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N8-A4PL                   TCGA-N8-A4PM 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N8-A4PN                   TCGA-N8-A4PO 
  "AMP PEAK 19(17Q12) MUTATED" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-N8-A4PP                   TCGA-N8-A4PQ 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-N8-A56S                   TCGA-NA-A4QW 
"AMP PEAK 19(17Q12) WILD-TYPE"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-NA-A4QX                   TCGA-NA-A4QY 
"AMP PEAK 19(17Q12) WILD-TYPE"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-NA-A4R1                   TCGA-NA-A5I1 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-ND-A4W6                   TCGA-ND-A4WA 
  "AMP PEAK 19(17Q12) MUTATED"   "AMP PEAK 19(17Q12) MUTATED" 
                  TCGA-ND-A4WC                   TCGA-ND-A4WF 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
                  TCGA-NG-A4VW                   TCGA-QM-A5NM 
"AMP PEAK 19(17Q12) WILD-TYPE" "AMP PEAK 19(17Q12) WILD-TYPE" 
[1] "hr=" "1.6"
D19V2, continuous

Clustering(20) Variable = AMP PEAK 20(17Q25.1) MUTATION ANALYSIS
D20V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 20(17Q25.1) MUTATED    7  9
  AMP PEAK 20(17Q25.1) WILD-TYPE  6 10
  AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE 
                            16                             16 
  AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE 
                             9                             10 
$`AMP PEAK 20(17Q25.1) MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RS TCGA-N5-A4RU 
        4.64        18.08         4.87        24.00        29.95        50.17 
TCGA-N5-A4RV TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-NA-A4QW 
       59.70        16.34        13.94        14.40         4.77        74.33 
TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-ND-A4W6 TCGA-ND-A4WA 
        3.72         6.64        10.42        23.47 

$`AMP PEAK 20(17Q25.1) WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RO TCGA-N5-A4RT TCGA-N5-A59E TCGA-N5-A59F 
       52.27        47.31        22.52        69.63        14.70        11.87 
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QX TCGA-NA-A5I1 
       26.63        13.71         7.20         9.70        27.39        85.35 
TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
       15.16         5.49        31.17         5.42 

  AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE 
                          3.72                           5.42 
  AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE 
                         74.33                          85.35 
  AMP PEAK 20(17Q25.1) MUTATED AMP PEAK 20(17Q25.1) WILD-TYPE 
                         15.37                          18.84 
[1] "3.7 - 74.3 (15.4)" "5.4 - 85.3 (18.8)"
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"AMP PEAK 20(17Q25.1) WILD-TYPE"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"AMP PEAK 20(17Q25.1) WILD-TYPE"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "AMP PEAK 20(17Q25.1) MUTATED"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"AMP PEAK 20(17Q25.1) WILD-TYPE"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"AMP PEAK 20(17Q25.1) WILD-TYPE"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "AMP PEAK 20(17Q25.1) MUTATED" "AMP PEAK 20(17Q25.1) WILD-TYPE" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"AMP PEAK 20(17Q25.1) WILD-TYPE" "AMP PEAK 20(17Q25.1) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"AMP PEAK 20(17Q25.1) WILD-TYPE"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "AMP PEAK 20(17Q25.1) MUTATED"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"AMP PEAK 20(17Q25.1) WILD-TYPE"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"AMP PEAK 20(17Q25.1) WILD-TYPE"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"AMP PEAK 20(17Q25.1) WILD-TYPE"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "AMP PEAK 20(17Q25.1) MUTATED" "AMP PEAK 20(17Q25.1) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 20(17Q25.1) MUTATED"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 20(17Q25.1) WILD-TYPE" "AMP PEAK 20(17Q25.1) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"AMP PEAK 20(17Q25.1) WILD-TYPE" "AMP PEAK 20(17Q25.1) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"AMP PEAK 20(17Q25.1) WILD-TYPE"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"AMP PEAK 20(17Q25.1) WILD-TYPE"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "AMP PEAK 20(17Q25.1) MUTATED"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"AMP PEAK 20(17Q25.1) WILD-TYPE"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"AMP PEAK 20(17Q25.1) WILD-TYPE"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "AMP PEAK 20(17Q25.1) MUTATED" "AMP PEAK 20(17Q25.1) WILD-TYPE" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"AMP PEAK 20(17Q25.1) WILD-TYPE" "AMP PEAK 20(17Q25.1) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"AMP PEAK 20(17Q25.1) WILD-TYPE"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "AMP PEAK 20(17Q25.1) MUTATED"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"AMP PEAK 20(17Q25.1) WILD-TYPE"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"AMP PEAK 20(17Q25.1) WILD-TYPE"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"AMP PEAK 20(17Q25.1) WILD-TYPE"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "AMP PEAK 20(17Q25.1) MUTATED" "AMP PEAK 20(17Q25.1) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 20(17Q25.1) MUTATED"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 20(17Q25.1) WILD-TYPE" "AMP PEAK 20(17Q25.1) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"AMP PEAK 20(17Q25.1) WILD-TYPE" "AMP PEAK 20(17Q25.1) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"AMP PEAK 20(17Q25.1) WILD-TYPE"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"AMP PEAK 20(17Q25.1) WILD-TYPE"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "AMP PEAK 20(17Q25.1) MUTATED"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"AMP PEAK 20(17Q25.1) WILD-TYPE"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"AMP PEAK 20(17Q25.1) WILD-TYPE"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "AMP PEAK 20(17Q25.1) MUTATED" "AMP PEAK 20(17Q25.1) WILD-TYPE" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"AMP PEAK 20(17Q25.1) WILD-TYPE" "AMP PEAK 20(17Q25.1) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"AMP PEAK 20(17Q25.1) WILD-TYPE"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "AMP PEAK 20(17Q25.1) MUTATED"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"AMP PEAK 20(17Q25.1) WILD-TYPE"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"AMP PEAK 20(17Q25.1) WILD-TYPE"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"AMP PEAK 20(17Q25.1) WILD-TYPE"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "AMP PEAK 20(17Q25.1) MUTATED" "AMP PEAK 20(17Q25.1) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 20(17Q25.1) MUTATED"   "AMP PEAK 20(17Q25.1) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 20(17Q25.1) WILD-TYPE" "AMP PEAK 20(17Q25.1) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"AMP PEAK 20(17Q25.1) WILD-TYPE" "AMP PEAK 20(17Q25.1) WILD-TYPE" 
[1] "hr=" "1.1"
D20V2, continuous

Clustering(21) Variable = AMP PEAK 21(19P13.2) MUTATION ANALYSIS
D21V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 21(19P13.2) MUTATED    4  2
  AMP PEAK 21(19P13.2) WILD-TYPE  9 17
  AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE 
                             6                             26 
  AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE 
                             2                             17 
$`AMP PEAK 21(19P13.2) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RV TCGA-N8-A4PO TCGA-N8-A4PP TCGA-NA-A4QY TCGA-QM-A5NM 
       52.27        59.70        14.40         7.20         3.72         5.42 

$`AMP PEAK 21(19P13.2) WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
        4.64        47.31        18.08         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI 
       29.95        69.63        50.17        14.70        11.87        26.63 
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW 
       13.71        16.34        13.94         4.77         9.70        74.33 
TCGA-NA-A4QX TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC 
       27.39         6.64        85.35        10.42        23.47        15.16 
TCGA-ND-A4WF TCGA-NG-A4VW 
        5.49        31.17 

  AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE 
                          3.72                           4.64 
  AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE 
                         59.70                          85.35 
  AMP PEAK 21(19P13.2) MUTATED AMP PEAK 21(19P13.2) WILD-TYPE 
                         10.80                          17.21 
[1] "3.7 - 59.7 (10.8)" "4.6 - 85.3 (17.2)"
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "AMP PEAK 21(19P13.2) MUTATED" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "AMP PEAK 21(19P13.2) MUTATED" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"AMP PEAK 21(19P13.2) WILD-TYPE"   "AMP PEAK 21(19P13.2) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "AMP PEAK 21(19P13.2) MUTATED" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"AMP PEAK 21(19P13.2) WILD-TYPE"   "AMP PEAK 21(19P13.2) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"AMP PEAK 21(19P13.2) WILD-TYPE"   "AMP PEAK 21(19P13.2) MUTATED" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "AMP PEAK 21(19P13.2) MUTATED" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "AMP PEAK 21(19P13.2) MUTATED" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"AMP PEAK 21(19P13.2) WILD-TYPE"   "AMP PEAK 21(19P13.2) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "AMP PEAK 21(19P13.2) MUTATED" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"AMP PEAK 21(19P13.2) WILD-TYPE"   "AMP PEAK 21(19P13.2) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"AMP PEAK 21(19P13.2) WILD-TYPE"   "AMP PEAK 21(19P13.2) MUTATED" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "AMP PEAK 21(19P13.2) MUTATED" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "AMP PEAK 21(19P13.2) MUTATED" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"AMP PEAK 21(19P13.2) WILD-TYPE"   "AMP PEAK 21(19P13.2) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "AMP PEAK 21(19P13.2) MUTATED" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"AMP PEAK 21(19P13.2) WILD-TYPE"   "AMP PEAK 21(19P13.2) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 21(19P13.2) WILD-TYPE" "AMP PEAK 21(19P13.2) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"AMP PEAK 21(19P13.2) WILD-TYPE"   "AMP PEAK 21(19P13.2) MUTATED" 
[1] "hr=" "1.9"
D21V2, continuous

Clustering(22) Variable = AMP PEAK 22(19Q12) MUTATION ANALYSIS
D22V1, survival
                              sevent
clus2                           0  1
  AMP PEAK 22(19Q12) MUTATED   11 14
  AMP PEAK 22(19Q12) WILD-TYPE  2  5
  AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE 
                          25                            7 
  AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE 
                          14                            5 
$`AMP PEAK 22(19Q12) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS 
       52.27        18.08         4.87        24.00        22.52        29.95 
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N5-A59E TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN 
       69.63        59.70        14.70        13.71        16.34        13.94 
TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX 
       14.40         7.20         4.77         9.70        74.33        27.39 
TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF 
        3.72         6.64        85.35        10.42        23.47         5.49 
TCGA-QM-A5NM 
        5.42 

$`AMP PEAK 22(19Q12) WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RU TCGA-N5-A59F TCGA-N8-A4PI TCGA-ND-A4WC 
        4.64        47.31        50.17        11.87        26.63        15.16 
TCGA-NG-A4VW 
       31.17 

  AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE 
                        3.72                         4.64 
  AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE 
                       85.35                        50.17 
  AMP PEAK 22(19Q12) MUTATED AMP PEAK 22(19Q12) WILD-TYPE 
                       14.70                        26.63 
[1] "3.7 - 85.3 (14.7)" "4.6 - 50.2 (26.6)"
                  TCGA-N5-A4RA                   TCGA-N5-A4RD 
  "AMP PEAK 22(19Q12) MUTATED" "AMP PEAK 22(19Q12) WILD-TYPE" 
                  TCGA-N5-A4RF                   TCGA-N5-A4RJ 
"AMP PEAK 22(19Q12) WILD-TYPE"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-N5-A4RM                   TCGA-N5-A4RN 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-N5-A4RO                   TCGA-N5-A4RS 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-N5-A4RT                   TCGA-N5-A4RU 
  "AMP PEAK 22(19Q12) MUTATED" "AMP PEAK 22(19Q12) WILD-TYPE" 
                  TCGA-N5-A4RV                   TCGA-N5-A59E 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-N5-A59F                   TCGA-N8-A4PI 
"AMP PEAK 22(19Q12) WILD-TYPE" "AMP PEAK 22(19Q12) WILD-TYPE" 
                  TCGA-N8-A4PL                   TCGA-N8-A4PM 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-N8-A4PN                   TCGA-N8-A4PO 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-N8-A4PP                   TCGA-N8-A4PQ 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-N8-A56S                   TCGA-NA-A4QW 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-NA-A4QX                   TCGA-NA-A4QY 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-NA-A4R1                   TCGA-NA-A5I1 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-ND-A4W6                   TCGA-ND-A4WA 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-ND-A4WC                   TCGA-ND-A4WF 
"AMP PEAK 22(19Q12) WILD-TYPE"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-NG-A4VW                   TCGA-QM-A5NM 
"AMP PEAK 22(19Q12) WILD-TYPE"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-N5-A4RA                   TCGA-N5-A4RD 
  "AMP PEAK 22(19Q12) MUTATED" "AMP PEAK 22(19Q12) WILD-TYPE" 
                  TCGA-N5-A4RF                   TCGA-N5-A4RJ 
"AMP PEAK 22(19Q12) WILD-TYPE"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-N5-A4RM                   TCGA-N5-A4RN 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-N5-A4RO                   TCGA-N5-A4RS 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-N5-A4RT                   TCGA-N5-A4RU 
  "AMP PEAK 22(19Q12) MUTATED" "AMP PEAK 22(19Q12) WILD-TYPE" 
                  TCGA-N5-A4RV                   TCGA-N5-A59E 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-N5-A59F                   TCGA-N8-A4PI 
"AMP PEAK 22(19Q12) WILD-TYPE" "AMP PEAK 22(19Q12) WILD-TYPE" 
                  TCGA-N8-A4PL                   TCGA-N8-A4PM 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-N8-A4PN                   TCGA-N8-A4PO 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-N8-A4PP                   TCGA-N8-A4PQ 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-N8-A56S                   TCGA-NA-A4QW 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-NA-A4QX                   TCGA-NA-A4QY 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-NA-A4R1                   TCGA-NA-A5I1 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-ND-A4W6                   TCGA-ND-A4WA 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-ND-A4WC                   TCGA-ND-A4WF 
"AMP PEAK 22(19Q12) WILD-TYPE"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-NG-A4VW                   TCGA-QM-A5NM 
"AMP PEAK 22(19Q12) WILD-TYPE"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-N5-A4RA                   TCGA-N5-A4RD 
  "AMP PEAK 22(19Q12) MUTATED" "AMP PEAK 22(19Q12) WILD-TYPE" 
                  TCGA-N5-A4RF                   TCGA-N5-A4RJ 
"AMP PEAK 22(19Q12) WILD-TYPE"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-N5-A4RM                   TCGA-N5-A4RN 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-N5-A4RO                   TCGA-N5-A4RS 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-N5-A4RT                   TCGA-N5-A4RU 
  "AMP PEAK 22(19Q12) MUTATED" "AMP PEAK 22(19Q12) WILD-TYPE" 
                  TCGA-N5-A4RV                   TCGA-N5-A59E 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-N5-A59F                   TCGA-N8-A4PI 
"AMP PEAK 22(19Q12) WILD-TYPE" "AMP PEAK 22(19Q12) WILD-TYPE" 
                  TCGA-N8-A4PL                   TCGA-N8-A4PM 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-N8-A4PN                   TCGA-N8-A4PO 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-N8-A4PP                   TCGA-N8-A4PQ 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-N8-A56S                   TCGA-NA-A4QW 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-NA-A4QX                   TCGA-NA-A4QY 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-NA-A4R1                   TCGA-NA-A5I1 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-ND-A4W6                   TCGA-ND-A4WA 
  "AMP PEAK 22(19Q12) MUTATED"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-ND-A4WC                   TCGA-ND-A4WF 
"AMP PEAK 22(19Q12) WILD-TYPE"   "AMP PEAK 22(19Q12) MUTATED" 
                  TCGA-NG-A4VW                   TCGA-QM-A5NM 
"AMP PEAK 22(19Q12) WILD-TYPE"   "AMP PEAK 22(19Q12) MUTATED" 
[1] "hr=" "1.1"
D22V2, continuous

Clustering(23) Variable = AMP PEAK 23(20Q11.21) MUTATION ANALYSIS
D23V1, survival
                                 sevent
clus2                              0  1
  AMP PEAK 23(20Q11.21) MUTATED   11 18
  AMP PEAK 23(20Q11.21) WILD-TYPE  2  1
  AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE 
                             29                               3 
  AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE 
                             18                               1 
$`AMP PEAK 23(20Q11.21) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.27         4.64        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E 
       22.52        29.95        69.63        50.17        59.70        14.70 
TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO 
       11.87        26.63        13.71        16.34        13.94        14.40 
TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 
        4.77         9.70        74.33        27.39         3.72         6.64 
TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF TCGA-QM-A5NM 
       85.35        10.42        23.47         5.49         5.42 

$`AMP PEAK 23(20Q11.21) WILD-TYPE`
TCGA-N8-A4PP TCGA-ND-A4WC TCGA-NG-A4VW 
        7.20        15.16        31.17 

  AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE 
                           3.72                            7.20 
  AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE 
                          85.35                           31.17 
  AMP PEAK 23(20Q11.21) MUTATED AMP PEAK 23(20Q11.21) WILD-TYPE 
                          16.34                           15.16 
[1] "3.7 - 85.3 (16.3)" "7.2 - 31.2 (15.2)"
                     TCGA-N5-A4RA                      TCGA-N5-A4RD 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N5-A4RF                      TCGA-N5-A4RJ 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N5-A4RM                      TCGA-N5-A4RN 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N5-A4RO                      TCGA-N5-A4RS 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RU 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N5-A4RV                      TCGA-N5-A59E 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N5-A59F                      TCGA-N8-A4PI 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N8-A4PL                      TCGA-N8-A4PM 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N8-A4PN                      TCGA-N8-A4PO 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N8-A4PP                      TCGA-N8-A4PQ 
"AMP PEAK 23(20Q11.21) WILD-TYPE"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N8-A56S                      TCGA-NA-A4QW 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-NA-A4QX                      TCGA-NA-A4QY 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-NA-A4R1                      TCGA-NA-A5I1 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"AMP PEAK 23(20Q11.21) WILD-TYPE"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-NG-A4VW                      TCGA-QM-A5NM 
"AMP PEAK 23(20Q11.21) WILD-TYPE"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N5-A4RA                      TCGA-N5-A4RD 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N5-A4RF                      TCGA-N5-A4RJ 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N5-A4RM                      TCGA-N5-A4RN 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N5-A4RO                      TCGA-N5-A4RS 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RU 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N5-A4RV                      TCGA-N5-A59E 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N5-A59F                      TCGA-N8-A4PI 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N8-A4PL                      TCGA-N8-A4PM 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N8-A4PN                      TCGA-N8-A4PO 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N8-A4PP                      TCGA-N8-A4PQ 
"AMP PEAK 23(20Q11.21) WILD-TYPE"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N8-A56S                      TCGA-NA-A4QW 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-NA-A4QX                      TCGA-NA-A4QY 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-NA-A4R1                      TCGA-NA-A5I1 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"AMP PEAK 23(20Q11.21) WILD-TYPE"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-NG-A4VW                      TCGA-QM-A5NM 
"AMP PEAK 23(20Q11.21) WILD-TYPE"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N5-A4RA                      TCGA-N5-A4RD 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N5-A4RF                      TCGA-N5-A4RJ 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N5-A4RM                      TCGA-N5-A4RN 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N5-A4RO                      TCGA-N5-A4RS 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RU 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N5-A4RV                      TCGA-N5-A59E 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N5-A59F                      TCGA-N8-A4PI 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N8-A4PL                      TCGA-N8-A4PM 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N8-A4PN                      TCGA-N8-A4PO 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N8-A4PP                      TCGA-N8-A4PQ 
"AMP PEAK 23(20Q11.21) WILD-TYPE"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-N8-A56S                      TCGA-NA-A4QW 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-NA-A4QX                      TCGA-NA-A4QY 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-NA-A4R1                      TCGA-NA-A5I1 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
  "AMP PEAK 23(20Q11.21) MUTATED"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"AMP PEAK 23(20Q11.21) WILD-TYPE"   "AMP PEAK 23(20Q11.21) MUTATED" 
                     TCGA-NG-A4VW                      TCGA-QM-A5NM 
"AMP PEAK 23(20Q11.21) WILD-TYPE"   "AMP PEAK 23(20Q11.21) MUTATED" 
[1] "hr=" "1.7"
D23V2, continuous

Clustering(24) Variable = AMP PEAK 25(XP11.21) MUTATION ANALYSIS
D24V1, survival
                                sevent
clus2                             0  1
  AMP PEAK 25(XP11.21) MUTATED    4 11
  AMP PEAK 25(XP11.21) WILD-TYPE  9  8
  AMP PEAK 25(XP11.21) MUTATED AMP PEAK 25(XP11.21) WILD-TYPE 
                            15                             17 
  AMP PEAK 25(XP11.21) MUTATED AMP PEAK 25(XP11.21) WILD-TYPE 
                            11                              8 
$`AMP PEAK 25(XP11.21) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS 
       52.27        18.08         4.87        24.00        22.52        29.95 
TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI 
       69.63        50.17        59.70        14.70        11.87        26.63 
TCGA-NA-A4QW TCGA-ND-A4W6 TCGA-NG-A4VW 
       74.33        10.42        31.17 

$`AMP PEAK 25(XP11.21) WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO 
        4.64        47.31        13.71        16.34        13.94        14.40 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 
        7.20         4.77         9.70        27.39         3.72         6.64 
TCGA-NA-A5I1 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-QM-A5NM 
       85.35        23.47        15.16         5.49         5.42 

  AMP PEAK 25(XP11.21) MUTATED AMP PEAK 25(XP11.21) WILD-TYPE 
                          4.87                           3.72 
  AMP PEAK 25(XP11.21) MUTATED AMP PEAK 25(XP11.21) WILD-TYPE 
                         74.33                          85.35 
  AMP PEAK 25(XP11.21) MUTATED AMP PEAK 25(XP11.21) WILD-TYPE 
                         26.63                          13.71 
[1] "4.9 - 74.3 (26.6)" "3.7 - 85.3 (13.7)"
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "AMP PEAK 25(XP11.21) MUTATED" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"AMP PEAK 25(XP11.21) WILD-TYPE"   "AMP PEAK 25(XP11.21) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "AMP PEAK 25(XP11.21) MUTATED"   "AMP PEAK 25(XP11.21) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "AMP PEAK 25(XP11.21) MUTATED"   "AMP PEAK 25(XP11.21) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "AMP PEAK 25(XP11.21) MUTATED"   "AMP PEAK 25(XP11.21) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "AMP PEAK 25(XP11.21) MUTATED"   "AMP PEAK 25(XP11.21) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "AMP PEAK 25(XP11.21) MUTATED"   "AMP PEAK 25(XP11.21) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"AMP PEAK 25(XP11.21) WILD-TYPE"   "AMP PEAK 25(XP11.21) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 25(XP11.21) MUTATED" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
  "AMP PEAK 25(XP11.21) MUTATED" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "AMP PEAK 25(XP11.21) MUTATED" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"AMP PEAK 25(XP11.21) WILD-TYPE"   "AMP PEAK 25(XP11.21) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "AMP PEAK 25(XP11.21) MUTATED"   "AMP PEAK 25(XP11.21) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "AMP PEAK 25(XP11.21) MUTATED"   "AMP PEAK 25(XP11.21) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "AMP PEAK 25(XP11.21) MUTATED"   "AMP PEAK 25(XP11.21) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "AMP PEAK 25(XP11.21) MUTATED"   "AMP PEAK 25(XP11.21) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "AMP PEAK 25(XP11.21) MUTATED"   "AMP PEAK 25(XP11.21) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"AMP PEAK 25(XP11.21) WILD-TYPE"   "AMP PEAK 25(XP11.21) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 25(XP11.21) MUTATED" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
  "AMP PEAK 25(XP11.21) MUTATED" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "AMP PEAK 25(XP11.21) MUTATED" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"AMP PEAK 25(XP11.21) WILD-TYPE"   "AMP PEAK 25(XP11.21) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "AMP PEAK 25(XP11.21) MUTATED"   "AMP PEAK 25(XP11.21) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "AMP PEAK 25(XP11.21) MUTATED"   "AMP PEAK 25(XP11.21) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "AMP PEAK 25(XP11.21) MUTATED"   "AMP PEAK 25(XP11.21) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "AMP PEAK 25(XP11.21) MUTATED"   "AMP PEAK 25(XP11.21) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "AMP PEAK 25(XP11.21) MUTATED"   "AMP PEAK 25(XP11.21) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"AMP PEAK 25(XP11.21) WILD-TYPE"   "AMP PEAK 25(XP11.21) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "AMP PEAK 25(XP11.21) MUTATED" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"AMP PEAK 25(XP11.21) WILD-TYPE" "AMP PEAK 25(XP11.21) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
  "AMP PEAK 25(XP11.21) MUTATED" "AMP PEAK 25(XP11.21) WILD-TYPE" 
[1] "hr=" "1.3"
D24V2, continuous

Clustering(25) Variable = DEL PEAK  1(1P36.21) MUTATION ANALYSIS
D25V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  1(1P36.21) MUTATED    5  4
  DEL PEAK  1(1P36.21) WILD-TYPE  8 15
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                             9                             23 
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                             4                             15 
$`DEL PEAK  1(1P36.21) MUTATED`
TCGA-N5-A4RD TCGA-N5-A59E TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S 
        4.64        14.70        14.40         7.20         4.77         9.70 
TCGA-NA-A5I1 TCGA-ND-A4WF TCGA-QM-A5NM 
       85.35         5.49         5.42 

$`DEL PEAK  1(1P36.21) WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.27        47.31        18.08         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59F TCGA-N8-A4PI 
       29.95        69.63        50.17        59.70        11.87        26.63 
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY 
       13.71        16.34        13.94        74.33        27.39         3.72 
TCGA-NA-A4R1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-NG-A4VW 
        6.64        10.42        23.47        15.16        31.17 

  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                          4.64                           3.72 
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                         85.35                          74.33 
  DEL PEAK  1(1P36.21) MUTATED DEL PEAK  1(1P36.21) WILD-TYPE 
                          7.20                          23.47 
[1] "4.6 - 85.3 (7.2)"  "3.7 - 74.3 (23.5)"
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"DEL PEAK  1(1P36.21) WILD-TYPE"   "DEL PEAK  1(1P36.21) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK  1(1P36.21) WILD-TYPE"   "DEL PEAK  1(1P36.21) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK  1(1P36.21) WILD-TYPE"   "DEL PEAK  1(1P36.21) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK  1(1P36.21) MUTATED"   "DEL PEAK  1(1P36.21) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "DEL PEAK  1(1P36.21) MUTATED" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"DEL PEAK  1(1P36.21) WILD-TYPE"   "DEL PEAK  1(1P36.21) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK  1(1P36.21) WILD-TYPE"   "DEL PEAK  1(1P36.21) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK  1(1P36.21) WILD-TYPE"   "DEL PEAK  1(1P36.21) MUTATED" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"DEL PEAK  1(1P36.21) WILD-TYPE"   "DEL PEAK  1(1P36.21) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK  1(1P36.21) WILD-TYPE"   "DEL PEAK  1(1P36.21) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK  1(1P36.21) WILD-TYPE"   "DEL PEAK  1(1P36.21) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK  1(1P36.21) MUTATED"   "DEL PEAK  1(1P36.21) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "DEL PEAK  1(1P36.21) MUTATED" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"DEL PEAK  1(1P36.21) WILD-TYPE"   "DEL PEAK  1(1P36.21) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK  1(1P36.21) WILD-TYPE"   "DEL PEAK  1(1P36.21) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK  1(1P36.21) WILD-TYPE"   "DEL PEAK  1(1P36.21) MUTATED" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"DEL PEAK  1(1P36.21) WILD-TYPE"   "DEL PEAK  1(1P36.21) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK  1(1P36.21) WILD-TYPE"   "DEL PEAK  1(1P36.21) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK  1(1P36.21) WILD-TYPE"   "DEL PEAK  1(1P36.21) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK  1(1P36.21) MUTATED"   "DEL PEAK  1(1P36.21) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "DEL PEAK  1(1P36.21) MUTATED" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"DEL PEAK  1(1P36.21) WILD-TYPE"   "DEL PEAK  1(1P36.21) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK  1(1P36.21) WILD-TYPE" "DEL PEAK  1(1P36.21) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK  1(1P36.21) WILD-TYPE"   "DEL PEAK  1(1P36.21) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK  1(1P36.21) WILD-TYPE"   "DEL PEAK  1(1P36.21) MUTATED" 
[1] "hr=" "1.5"
D25V2, continuous

Clustering(26) Variable = DEL PEAK  2(2Q22.1) MUTATION ANALYSIS
D26V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  2(2Q22.1) MUTATED    1  6
  DEL PEAK  2(2Q22.1) WILD-TYPE 12 13
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                            7                            25 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                            6                            13 
$`DEL PEAK  2(2Q22.1) MUTATED`
TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N8-A4PI TCGA-NA-A4QW TCGA-NA-A4QY TCGA-ND-A4WA 
       18.08         4.87        26.63        74.33         3.72        23.47 
TCGA-ND-A4WF 
        5.49 

$`DEL PEAK  2(2Q22.1) WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS 
       52.27         4.64        47.31        24.00        22.52        29.95 
TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PL 
       69.63        50.17        59.70        14.70        11.87        13.71 
TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S 
       16.34        13.94        14.40         7.20         4.77         9.70 
TCGA-NA-A4QX TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-NG-A4VW 
       27.39         6.64        85.35        10.42        15.16        31.17 
TCGA-QM-A5NM 
        5.42 

  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                         3.72                          4.64 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                        74.33                         85.35 
  DEL PEAK  2(2Q22.1) MUTATED DEL PEAK  2(2Q22.1) WILD-TYPE 
                        18.08                         15.16 
[1] "3.7 - 74.3 (18.1)" "4.6 - 85.3 (15.2)"
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
  "DEL PEAK  2(2Q22.1) MUTATED" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  2(2Q22.1) WILD-TYPE"   "DEL PEAK  2(2Q22.1) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK  2(2Q22.1) WILD-TYPE" "DEL PEAK  2(2Q22.1) WILD-TYPE" 
[1] "hr=" "2.1"
D26V2, continuous

Clustering(27) Variable = DEL PEAK  3(3P21.1) MUTATION ANALYSIS
D27V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  3(3P21.1) MUTATED    7 13
  DEL PEAK  3(3P21.1) WILD-TYPE  6  6
  DEL PEAK  3(3P21.1) MUTATED DEL PEAK  3(3P21.1) WILD-TYPE 
                           20                            12 
  DEL PEAK  3(3P21.1) MUTATED DEL PEAK  3(3P21.1) WILD-TYPE 
                           13                             6 
$`DEL PEAK  3(3P21.1) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RS 
       52.27         4.64        47.31         4.87        22.52        29.95 
TCGA-N5-A4RT TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM 
       69.63        14.70        11.87        26.63        13.71        16.34 
TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY 
       14.40         7.20         9.70        74.33        27.39         3.72 
TCGA-ND-A4WF TCGA-QM-A5NM 
        5.49         5.42 

$`DEL PEAK  3(3P21.1) WILD-TYPE`
TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N8-A4PN TCGA-N8-A4PQ 
       18.08        24.00        50.17        59.70        13.94         4.77 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-NG-A4VW 
        6.64        85.35        10.42        23.47        15.16        31.17 

  DEL PEAK  3(3P21.1) MUTATED DEL PEAK  3(3P21.1) WILD-TYPE 
                         3.72                          4.77 
  DEL PEAK  3(3P21.1) MUTATED DEL PEAK  3(3P21.1) WILD-TYPE 
                        74.33                         85.35 
  DEL PEAK  3(3P21.1) MUTATED DEL PEAK  3(3P21.1) WILD-TYPE 
                       14.550                        20.775 
[1] "3.7 - 74.3 (14.6)" "4.8 - 85.3 (20.8)"
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "DEL PEAK  3(3P21.1) MUTATED"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
  "DEL PEAK  3(3P21.1) MUTATED" "DEL PEAK  3(3P21.1) WILD-TYPE" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
  "DEL PEAK  3(3P21.1) MUTATED" "DEL PEAK  3(3P21.1) WILD-TYPE" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
  "DEL PEAK  3(3P21.1) MUTATED"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "DEL PEAK  3(3P21.1) MUTATED" "DEL PEAK  3(3P21.1) WILD-TYPE" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
"DEL PEAK  3(3P21.1) WILD-TYPE"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "DEL PEAK  3(3P21.1) MUTATED"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
  "DEL PEAK  3(3P21.1) MUTATED"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
"DEL PEAK  3(3P21.1) WILD-TYPE"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "DEL PEAK  3(3P21.1) MUTATED" "DEL PEAK  3(3P21.1) WILD-TYPE" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
  "DEL PEAK  3(3P21.1) MUTATED"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "DEL PEAK  3(3P21.1) MUTATED"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"DEL PEAK  3(3P21.1) WILD-TYPE" "DEL PEAK  3(3P21.1) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"DEL PEAK  3(3P21.1) WILD-TYPE" "DEL PEAK  3(3P21.1) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  3(3P21.1) WILD-TYPE"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK  3(3P21.1) WILD-TYPE"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "DEL PEAK  3(3P21.1) MUTATED"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
  "DEL PEAK  3(3P21.1) MUTATED" "DEL PEAK  3(3P21.1) WILD-TYPE" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
  "DEL PEAK  3(3P21.1) MUTATED" "DEL PEAK  3(3P21.1) WILD-TYPE" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
  "DEL PEAK  3(3P21.1) MUTATED"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "DEL PEAK  3(3P21.1) MUTATED" "DEL PEAK  3(3P21.1) WILD-TYPE" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
"DEL PEAK  3(3P21.1) WILD-TYPE"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "DEL PEAK  3(3P21.1) MUTATED"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
  "DEL PEAK  3(3P21.1) MUTATED"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
"DEL PEAK  3(3P21.1) WILD-TYPE"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "DEL PEAK  3(3P21.1) MUTATED" "DEL PEAK  3(3P21.1) WILD-TYPE" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
  "DEL PEAK  3(3P21.1) MUTATED"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "DEL PEAK  3(3P21.1) MUTATED"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"DEL PEAK  3(3P21.1) WILD-TYPE" "DEL PEAK  3(3P21.1) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"DEL PEAK  3(3P21.1) WILD-TYPE" "DEL PEAK  3(3P21.1) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  3(3P21.1) WILD-TYPE"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK  3(3P21.1) WILD-TYPE"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "DEL PEAK  3(3P21.1) MUTATED"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
  "DEL PEAK  3(3P21.1) MUTATED" "DEL PEAK  3(3P21.1) WILD-TYPE" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
  "DEL PEAK  3(3P21.1) MUTATED" "DEL PEAK  3(3P21.1) WILD-TYPE" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
  "DEL PEAK  3(3P21.1) MUTATED"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "DEL PEAK  3(3P21.1) MUTATED" "DEL PEAK  3(3P21.1) WILD-TYPE" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
"DEL PEAK  3(3P21.1) WILD-TYPE"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "DEL PEAK  3(3P21.1) MUTATED"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
  "DEL PEAK  3(3P21.1) MUTATED"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
"DEL PEAK  3(3P21.1) WILD-TYPE"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "DEL PEAK  3(3P21.1) MUTATED" "DEL PEAK  3(3P21.1) WILD-TYPE" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
  "DEL PEAK  3(3P21.1) MUTATED"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "DEL PEAK  3(3P21.1) MUTATED"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"DEL PEAK  3(3P21.1) WILD-TYPE" "DEL PEAK  3(3P21.1) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"DEL PEAK  3(3P21.1) WILD-TYPE" "DEL PEAK  3(3P21.1) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  3(3P21.1) WILD-TYPE"   "DEL PEAK  3(3P21.1) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK  3(3P21.1) WILD-TYPE"   "DEL PEAK  3(3P21.1) MUTATED" 
[1] "hr=" "1.6"
D27V2, continuous

Clustering(28) Variable = DEL PEAK  4(3P14.1) MUTATION ANALYSIS
D28V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  4(3P14.1) MUTATED    5 10
  DEL PEAK  4(3P14.1) WILD-TYPE  8  9
  DEL PEAK  4(3P14.1) MUTATED DEL PEAK  4(3P14.1) WILD-TYPE 
                           15                            17 
  DEL PEAK  4(3P14.1) MUTATED DEL PEAK  4(3P14.1) WILD-TYPE 
                           10                             9 
$`DEL PEAK  4(3P14.1) MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A59F 
        4.64        47.31         4.87        29.95        69.63        11.87 
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QX 
       26.63        13.71        14.40         7.20         9.70        27.39 
TCGA-NA-A4QY TCGA-ND-A4WF TCGA-QM-A5NM 
        3.72         5.49         5.42 

$`DEL PEAK  4(3P14.1) WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RU TCGA-N5-A4RV 
       52.27        18.08        24.00        22.52        50.17        59.70 
TCGA-N5-A59E TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-NA-A4QW TCGA-NA-A4R1 
       14.70        16.34        13.94         4.77        74.33         6.64 
TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-NG-A4VW 
       85.35        10.42        23.47        15.16        31.17 

  DEL PEAK  4(3P14.1) MUTATED DEL PEAK  4(3P14.1) WILD-TYPE 
                         3.72                          4.77 
  DEL PEAK  4(3P14.1) MUTATED DEL PEAK  4(3P14.1) WILD-TYPE 
                        69.63                         85.35 
  DEL PEAK  4(3P14.1) MUTATED DEL PEAK  4(3P14.1) WILD-TYPE 
                        11.87                         22.52 
[1] "3.7 - 69.6 (11.9)" "4.8 - 85.3 (22.5)"
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
"DEL PEAK  4(3P14.1) WILD-TYPE"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
  "DEL PEAK  4(3P14.1) MUTATED" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
  "DEL PEAK  4(3P14.1) MUTATED" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
"DEL PEAK  4(3P14.1) WILD-TYPE"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "DEL PEAK  4(3P14.1) MUTATED" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
"DEL PEAK  4(3P14.1) WILD-TYPE" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "DEL PEAK  4(3P14.1) MUTATED"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
  "DEL PEAK  4(3P14.1) MUTATED" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
"DEL PEAK  4(3P14.1) WILD-TYPE"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "DEL PEAK  4(3P14.1) MUTATED" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
  "DEL PEAK  4(3P14.1) MUTATED" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "DEL PEAK  4(3P14.1) MUTATED"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"DEL PEAK  4(3P14.1) WILD-TYPE" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"DEL PEAK  4(3P14.1) WILD-TYPE" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  4(3P14.1) WILD-TYPE"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK  4(3P14.1) WILD-TYPE"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
"DEL PEAK  4(3P14.1) WILD-TYPE"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
  "DEL PEAK  4(3P14.1) MUTATED" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
  "DEL PEAK  4(3P14.1) MUTATED" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
"DEL PEAK  4(3P14.1) WILD-TYPE"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "DEL PEAK  4(3P14.1) MUTATED" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
"DEL PEAK  4(3P14.1) WILD-TYPE" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "DEL PEAK  4(3P14.1) MUTATED"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
  "DEL PEAK  4(3P14.1) MUTATED" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
"DEL PEAK  4(3P14.1) WILD-TYPE"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "DEL PEAK  4(3P14.1) MUTATED" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
  "DEL PEAK  4(3P14.1) MUTATED" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "DEL PEAK  4(3P14.1) MUTATED"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"DEL PEAK  4(3P14.1) WILD-TYPE" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"DEL PEAK  4(3P14.1) WILD-TYPE" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  4(3P14.1) WILD-TYPE"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK  4(3P14.1) WILD-TYPE"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
"DEL PEAK  4(3P14.1) WILD-TYPE"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
  "DEL PEAK  4(3P14.1) MUTATED" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
  "DEL PEAK  4(3P14.1) MUTATED" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
"DEL PEAK  4(3P14.1) WILD-TYPE"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "DEL PEAK  4(3P14.1) MUTATED" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
"DEL PEAK  4(3P14.1) WILD-TYPE" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "DEL PEAK  4(3P14.1) MUTATED"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
  "DEL PEAK  4(3P14.1) MUTATED" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
"DEL PEAK  4(3P14.1) WILD-TYPE"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "DEL PEAK  4(3P14.1) MUTATED" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
  "DEL PEAK  4(3P14.1) MUTATED" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "DEL PEAK  4(3P14.1) MUTATED"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"DEL PEAK  4(3P14.1) WILD-TYPE" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"DEL PEAK  4(3P14.1) WILD-TYPE" "DEL PEAK  4(3P14.1) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  4(3P14.1) WILD-TYPE"   "DEL PEAK  4(3P14.1) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK  4(3P14.1) WILD-TYPE"   "DEL PEAK  4(3P14.1) MUTATED" 
[1] "hr=" "2.1"
D28V2, continuous

Clustering(29) Variable = DEL PEAK  5(3Q13.31) MUTATION ANALYSIS
D29V1, survival
                                sevent
clus2                             0  1
  DEL PEAK  5(3Q13.31) MUTATED    5  9
  DEL PEAK  5(3Q13.31) WILD-TYPE  8 10
  DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE 
                            14                             18 
  DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE 
                             9                             10 
$`DEL PEAK  5(3Q13.31) MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59F 
        4.64        47.31         4.87        69.63        50.17        11.87 
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A56S TCGA-NA-A4QW 
       26.63        13.71        16.34        14.40         9.70        74.33 
TCGA-NA-A4QY TCGA-ND-A4WF 
        3.72         5.49 

$`DEL PEAK  5(3Q13.31) WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RV 
       52.27        18.08        24.00        22.52        29.95        59.70 
TCGA-N5-A59E TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-NA-A4QX TCGA-NA-A4R1 
       14.70        13.94         7.20         4.77        27.39         6.64 
TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-NG-A4VW TCGA-QM-A5NM 
       85.35        10.42        23.47        15.16        31.17         5.42 

  DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE 
                          3.72                           4.77 
  DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE 
                         74.33                          85.35 
  DEL PEAK  5(3Q13.31) MUTATED DEL PEAK  5(3Q13.31) WILD-TYPE 
                        14.055                         20.300 
[1] "3.7 - 74.3 (14.1)" "4.8 - 85.3 (20.3)"
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"DEL PEAK  5(3Q13.31) WILD-TYPE"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK  5(3Q13.31) MUTATED" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK  5(3Q13.31) MUTATED" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"DEL PEAK  5(3Q13.31) WILD-TYPE" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "DEL PEAK  5(3Q13.31) MUTATED"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK  5(3Q13.31) WILD-TYPE" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK  5(3Q13.31) MUTATED"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK  5(3Q13.31) MUTATED"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK  5(3Q13.31) WILD-TYPE"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"DEL PEAK  5(3Q13.31) WILD-TYPE" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "DEL PEAK  5(3Q13.31) MUTATED"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"DEL PEAK  5(3Q13.31) WILD-TYPE"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"DEL PEAK  5(3Q13.31) WILD-TYPE" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK  5(3Q13.31) WILD-TYPE" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK  5(3Q13.31) WILD-TYPE"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK  5(3Q13.31) WILD-TYPE" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"DEL PEAK  5(3Q13.31) WILD-TYPE"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK  5(3Q13.31) MUTATED" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK  5(3Q13.31) MUTATED" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"DEL PEAK  5(3Q13.31) WILD-TYPE" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "DEL PEAK  5(3Q13.31) MUTATED"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK  5(3Q13.31) WILD-TYPE" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK  5(3Q13.31) MUTATED"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK  5(3Q13.31) MUTATED"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK  5(3Q13.31) WILD-TYPE"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"DEL PEAK  5(3Q13.31) WILD-TYPE" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "DEL PEAK  5(3Q13.31) MUTATED"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"DEL PEAK  5(3Q13.31) WILD-TYPE"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"DEL PEAK  5(3Q13.31) WILD-TYPE" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK  5(3Q13.31) WILD-TYPE" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK  5(3Q13.31) WILD-TYPE"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK  5(3Q13.31) WILD-TYPE" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"DEL PEAK  5(3Q13.31) WILD-TYPE"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK  5(3Q13.31) MUTATED" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK  5(3Q13.31) MUTATED" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"DEL PEAK  5(3Q13.31) WILD-TYPE" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "DEL PEAK  5(3Q13.31) MUTATED"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK  5(3Q13.31) WILD-TYPE" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK  5(3Q13.31) MUTATED"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK  5(3Q13.31) MUTATED"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK  5(3Q13.31) WILD-TYPE"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"DEL PEAK  5(3Q13.31) WILD-TYPE" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "DEL PEAK  5(3Q13.31) MUTATED"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"DEL PEAK  5(3Q13.31) WILD-TYPE"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"DEL PEAK  5(3Q13.31) WILD-TYPE" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK  5(3Q13.31) WILD-TYPE" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK  5(3Q13.31) WILD-TYPE"   "DEL PEAK  5(3Q13.31) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK  5(3Q13.31) WILD-TYPE" "DEL PEAK  5(3Q13.31) WILD-TYPE" 
[1] "hr=" "1.3"
D29V2, continuous

Clustering(30) Variable = DEL PEAK  6(4Q22.1) MUTATION ANALYSIS
D30V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  6(4Q22.1) MUTATED    9 14
  DEL PEAK  6(4Q22.1) WILD-TYPE  4  5
  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE 
                           23                             9 
  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE 
                           14                             5 
$`DEL PEAK  6(4Q22.1) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.27         4.64        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59F TCGA-N8-A4PL TCGA-N8-A4PO 
       22.52        50.17        59.70        11.87        13.71        14.40 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY 
        7.20         4.77         9.70        74.33        27.39         3.72 
TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF TCGA-QM-A5NM 
       85.35        10.42        23.47         5.49         5.42 

$`DEL PEAK  6(4Q22.1) WILD-TYPE`
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A59E TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN 
       29.95        69.63        14.70        26.63        16.34        13.94 
TCGA-NA-A4R1 TCGA-ND-A4WC TCGA-NG-A4VW 
        6.64        15.16        31.17 

  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE 
                         3.72                          6.64 
  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE 
                        85.35                         69.63 
  DEL PEAK  6(4Q22.1) MUTATED DEL PEAK  6(4Q22.1) WILD-TYPE 
                        14.40                         16.34 
[1] "3.7 - 85.3 (14.4)" "6.6 - 69.6 (16.3)"
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
  "DEL PEAK  6(4Q22.1) MUTATED" "DEL PEAK  6(4Q22.1) WILD-TYPE" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK  6(4Q22.1) MUTATED"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK  6(4Q22.1) WILD-TYPE"   "DEL PEAK  6(4Q22.1) MUTATED" 
[1] "hr=" "1.2"
D30V2, continuous

Clustering(31) Variable = DEL PEAK  7(4Q34.3) MUTATION ANALYSIS
D31V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  7(4Q34.3) MUTATED    8 16
  DEL PEAK  7(4Q34.3) WILD-TYPE  5  3
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                           24                             8 
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                           16                             3 
$`DEL PEAK  7(4Q34.3) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RO 
       52.27         4.64        47.31        18.08         4.87        22.52 
TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PL TCGA-N8-A4PO 
       69.63        50.17        14.70        11.87        13.71        14.40 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY 
        7.20         4.77         9.70        74.33        27.39         3.72 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF TCGA-QM-A5NM 
        6.64        85.35        10.42        23.47         5.49         5.42 

$`DEL PEAK  7(4Q34.3) WILD-TYPE`
TCGA-N5-A4RN TCGA-N5-A4RS TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN 
       24.00        29.95        59.70        26.63        16.34        13.94 
TCGA-ND-A4WC TCGA-NG-A4VW 
       15.16        31.17 

  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                         3.72                         13.94 
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                        85.35                         59.70 
  DEL PEAK  7(4Q34.3) MUTATED DEL PEAK  7(4Q34.3) WILD-TYPE 
                       14.055                        25.315 
[1] "3.7 - 85.3 (14.1)"  "13.9 - 59.7 (25.3)"
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
  "DEL PEAK  7(4Q34.3) MUTATED" "DEL PEAK  7(4Q34.3) WILD-TYPE" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK  7(4Q34.3) MUTATED"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK  7(4Q34.3) WILD-TYPE"   "DEL PEAK  7(4Q34.3) MUTATED" 
[1] "hr=" "2.4"
D31V2, continuous

Clustering(32) Variable = DEL PEAK  8(5Q11.2) MUTATION ANALYSIS
D32V1, survival
                               sevent
clus2                            0  1
  DEL PEAK  8(5Q11.2) MUTATED    6  7
  DEL PEAK  8(5Q11.2) WILD-TYPE  7 12
  DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE 
                           13                            19 
  DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE 
                            7                            12 
$`DEL PEAK  8(5Q11.2) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RN TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59E TCGA-N8-A4PL 
       52.27        24.00        69.63        50.17        14.70        13.71 
TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WA 
       16.34        14.40         4.77         6.64        85.35        23.47 
TCGA-ND-A4WF 
        5.49 

$`DEL PEAK  8(5Q11.2) WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RS 
        4.64        47.31        18.08         4.87        22.52        29.95 
TCGA-N5-A4RV TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A56S 
       59.70        11.87        26.63        13.94         7.20         9.70 
TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-NG-A4VW 
       74.33        27.39         3.72        10.42        15.16        31.17 
TCGA-QM-A5NM 
        5.42 

  DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE 
                         4.77                          3.72 
  DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE 
                        85.35                         74.33 
  DEL PEAK  8(5Q11.2) MUTATED DEL PEAK  8(5Q11.2) WILD-TYPE 
                        16.34                         15.16 
[1] "4.8 - 85.3 (16.3)" "3.7 - 74.3 (15.2)"
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "DEL PEAK  8(5Q11.2) MUTATED" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
  "DEL PEAK  8(5Q11.2) MUTATED"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK  8(5Q11.2) WILD-TYPE"   "DEL PEAK  8(5Q11.2) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK  8(5Q11.2) WILD-TYPE" "DEL PEAK  8(5Q11.2) WILD-TYPE" 
[1] "hr=" "1.4"
D32V2, continuous

Clustering(33) Variable = DEL PEAK  9(6Q26) MUTATION ANALYSIS
D33V1, survival
                             sevent
clus2                          0  1
  DEL PEAK  9(6Q26) MUTATED    3  5
  DEL PEAK  9(6Q26) WILD-TYPE 10 14
  DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE 
                          8                          24 
  DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE 
                          5                          14 
$`DEL PEAK  9(6Q26) MUTATED`
TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RT TCGA-N5-A59F TCGA-N8-A4PL TCGA-N8-A4PP 
        4.87        22.52        69.63        11.87        13.71         7.20 
TCGA-N8-A4PQ TCGA-NA-A4QY 
        4.77         3.72 

$`DEL PEAK  9(6Q26) WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RS 
       52.27         4.64        47.31        18.08        24.00        29.95 
TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PN 
       50.17        59.70        14.70        26.63        16.34        13.94 
TCGA-N8-A4PO TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4R1 TCGA-NA-A5I1 
       14.40         9.70        74.33        27.39         6.64        85.35 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
       10.42        23.47        15.16         5.49        31.17         5.42 

  DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE 
                       3.72                        4.64 
  DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE 
                      69.63                       85.35 
  DEL PEAK  9(6Q26) MUTATED DEL PEAK  9(6Q26) WILD-TYPE 
                      9.535                      20.775 
[1] "3.7 - 69.6 (9.5)"  "4.6 - 85.3 (20.8)"
                 TCGA-N5-A4RA                  TCGA-N5-A4RD 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N5-A4RF                  TCGA-N5-A4RJ 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N5-A4RM                  TCGA-N5-A4RN 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N5-A4RO                  TCGA-N5-A4RS 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RU 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N5-A4RV                  TCGA-N5-A59E 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N5-A59F                  TCGA-N8-A4PI 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N8-A4PL                  TCGA-N8-A4PM 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N8-A4PN                  TCGA-N8-A4PO 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N8-A4PP                  TCGA-N8-A4PQ 
  "DEL PEAK  9(6Q26) MUTATED"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-N8-A56S                  TCGA-NA-A4QW 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-NA-A4QX                  TCGA-NA-A4QY 
"DEL PEAK  9(6Q26) WILD-TYPE"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-NA-A4R1                  TCGA-NA-A5I1 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-NG-A4VW                  TCGA-QM-A5NM 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N5-A4RA                  TCGA-N5-A4RD 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N5-A4RF                  TCGA-N5-A4RJ 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N5-A4RM                  TCGA-N5-A4RN 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N5-A4RO                  TCGA-N5-A4RS 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RU 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N5-A4RV                  TCGA-N5-A59E 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N5-A59F                  TCGA-N8-A4PI 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N8-A4PL                  TCGA-N8-A4PM 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N8-A4PN                  TCGA-N8-A4PO 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N8-A4PP                  TCGA-N8-A4PQ 
  "DEL PEAK  9(6Q26) MUTATED"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-N8-A56S                  TCGA-NA-A4QW 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-NA-A4QX                  TCGA-NA-A4QY 
"DEL PEAK  9(6Q26) WILD-TYPE"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-NA-A4R1                  TCGA-NA-A5I1 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-NG-A4VW                  TCGA-QM-A5NM 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N5-A4RA                  TCGA-N5-A4RD 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N5-A4RF                  TCGA-N5-A4RJ 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N5-A4RM                  TCGA-N5-A4RN 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N5-A4RO                  TCGA-N5-A4RS 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RU 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N5-A4RV                  TCGA-N5-A59E 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N5-A59F                  TCGA-N8-A4PI 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N8-A4PL                  TCGA-N8-A4PM 
  "DEL PEAK  9(6Q26) MUTATED" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N8-A4PN                  TCGA-N8-A4PO 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-N8-A4PP                  TCGA-N8-A4PQ 
  "DEL PEAK  9(6Q26) MUTATED"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-N8-A56S                  TCGA-NA-A4QW 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-NA-A4QX                  TCGA-NA-A4QY 
"DEL PEAK  9(6Q26) WILD-TYPE"   "DEL PEAK  9(6Q26) MUTATED" 
                 TCGA-NA-A4R1                  TCGA-NA-A5I1 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
                 TCGA-NG-A4VW                  TCGA-QM-A5NM 
"DEL PEAK  9(6Q26) WILD-TYPE" "DEL PEAK  9(6Q26) WILD-TYPE" 
[1] "hr=" "1.9"
D33V2, continuous

Clustering(34) Variable = DEL PEAK 10(7Q11.22) MUTATION ANALYSIS
D34V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 10(7Q11.22) MUTATED    3  4
  DEL PEAK 10(7Q11.22) WILD-TYPE 10 15
  DEL PEAK 10(7Q11.22) MUTATED DEL PEAK 10(7Q11.22) WILD-TYPE 
                             7                             25 
  DEL PEAK 10(7Q11.22) MUTATED DEL PEAK 10(7Q11.22) WILD-TYPE 
                             4                             15 
$`DEL PEAK 10(7Q11.22) MUTATED`
TCGA-N5-A4RJ TCGA-N5-A4RU TCGA-N5-A59F TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PQ 
       18.08        50.17        11.87        16.34        13.94         4.77 
TCGA-ND-A4W6 
       10.42 

$`DEL PEAK 10(7Q11.22) WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.27         4.64        47.31         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N5-A59E TCGA-N8-A4PI TCGA-N8-A4PL 
       29.95        69.63        59.70        14.70        26.63        13.71 
TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY 
       14.40         7.20         9.70        74.33        27.39         3.72 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW 
        6.64        85.35        23.47        15.16         5.49        31.17 
TCGA-QM-A5NM 
        5.42 

  DEL PEAK 10(7Q11.22) MUTATED DEL PEAK 10(7Q11.22) WILD-TYPE 
                          4.77                           3.72 
  DEL PEAK 10(7Q11.22) MUTATED DEL PEAK 10(7Q11.22) WILD-TYPE 
                         50.17                          85.35 
  DEL PEAK 10(7Q11.22) MUTATED DEL PEAK 10(7Q11.22) WILD-TYPE 
                         13.94                          22.52 
[1] "4.8 - 50.2 (13.9)" "3.7 - 85.3 (22.5)"
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"DEL PEAK 10(7Q11.22) WILD-TYPE"   "DEL PEAK 10(7Q11.22) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"DEL PEAK 10(7Q11.22) WILD-TYPE"   "DEL PEAK 10(7Q11.22) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 10(7Q11.22) MUTATED" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"DEL PEAK 10(7Q11.22) WILD-TYPE"   "DEL PEAK 10(7Q11.22) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "DEL PEAK 10(7Q11.22) MUTATED" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"DEL PEAK 10(7Q11.22) WILD-TYPE"   "DEL PEAK 10(7Q11.22) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 10(7Q11.22) MUTATED" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"DEL PEAK 10(7Q11.22) WILD-TYPE"   "DEL PEAK 10(7Q11.22) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"DEL PEAK 10(7Q11.22) WILD-TYPE"   "DEL PEAK 10(7Q11.22) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 10(7Q11.22) MUTATED" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"DEL PEAK 10(7Q11.22) WILD-TYPE"   "DEL PEAK 10(7Q11.22) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "DEL PEAK 10(7Q11.22) MUTATED" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"DEL PEAK 10(7Q11.22) WILD-TYPE"   "DEL PEAK 10(7Q11.22) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 10(7Q11.22) MUTATED" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"DEL PEAK 10(7Q11.22) WILD-TYPE"   "DEL PEAK 10(7Q11.22) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"DEL PEAK 10(7Q11.22) WILD-TYPE"   "DEL PEAK 10(7Q11.22) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 10(7Q11.22) MUTATED" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"DEL PEAK 10(7Q11.22) WILD-TYPE"   "DEL PEAK 10(7Q11.22) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "DEL PEAK 10(7Q11.22) MUTATED" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"DEL PEAK 10(7Q11.22) WILD-TYPE"   "DEL PEAK 10(7Q11.22) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 10(7Q11.22) MUTATED" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 10(7Q11.22) WILD-TYPE" "DEL PEAK 10(7Q11.22) WILD-TYPE" 
[1] "hr=" "1.4"
D34V2, continuous

Clustering(35) Variable = DEL PEAK 11(7Q36.2) MUTATION ANALYSIS
D35V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 11(7Q36.2) MUTATED    8  4
  DEL PEAK 11(7Q36.2) WILD-TYPE  5 15
  DEL PEAK 11(7Q36.2) MUTATED DEL PEAK 11(7Q36.2) WILD-TYPE 
                           12                            20 
  DEL PEAK 11(7Q36.2) MUTATED DEL PEAK 11(7Q36.2) WILD-TYPE 
                            4                            15 
$`DEL PEAK 11(7Q36.2) MUTATED`
TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PM 
       69.63        50.17        59.70        14.70        11.87        16.34 
TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-NA-A4QW TCGA-NA-A5I1 TCGA-ND-A4W6 
       13.94        14.40         4.77        74.33        85.35        10.42 

$`DEL PEAK 11(7Q36.2) WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.27         4.64        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PP TCGA-N8-A56S 
       22.52        29.95        26.63        13.71         7.20         9.70 
TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
       27.39         3.72         6.64        23.47        15.16         5.49 
TCGA-NG-A4VW TCGA-QM-A5NM 
       31.17         5.42 

  DEL PEAK 11(7Q36.2) MUTATED DEL PEAK 11(7Q36.2) WILD-TYPE 
                         4.77                          3.72 
  DEL PEAK 11(7Q36.2) MUTATED DEL PEAK 11(7Q36.2) WILD-TYPE 
                        85.35                         52.27 
  DEL PEAK 11(7Q36.2) MUTATED DEL PEAK 11(7Q36.2) WILD-TYPE 
                        15.52                         16.62 
[1] "4.8 - 85.3 (15.5)" "3.7 - 52.3 (16.6)"
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
"DEL PEAK 11(7Q36.2) WILD-TYPE" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"DEL PEAK 11(7Q36.2) WILD-TYPE" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
"DEL PEAK 11(7Q36.2) WILD-TYPE" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
"DEL PEAK 11(7Q36.2) WILD-TYPE" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "DEL PEAK 11(7Q36.2) MUTATED"   "DEL PEAK 11(7Q36.2) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
  "DEL PEAK 11(7Q36.2) MUTATED"   "DEL PEAK 11(7Q36.2) MUTATED" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "DEL PEAK 11(7Q36.2) MUTATED" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
"DEL PEAK 11(7Q36.2) WILD-TYPE"   "DEL PEAK 11(7Q36.2) MUTATED" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
  "DEL PEAK 11(7Q36.2) MUTATED"   "DEL PEAK 11(7Q36.2) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
"DEL PEAK 11(7Q36.2) WILD-TYPE"   "DEL PEAK 11(7Q36.2) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
"DEL PEAK 11(7Q36.2) WILD-TYPE"   "DEL PEAK 11(7Q36.2) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
"DEL PEAK 11(7Q36.2) WILD-TYPE" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"DEL PEAK 11(7Q36.2) WILD-TYPE"   "DEL PEAK 11(7Q36.2) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK 11(7Q36.2) MUTATED" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK 11(7Q36.2) WILD-TYPE" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK 11(7Q36.2) WILD-TYPE" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
"DEL PEAK 11(7Q36.2) WILD-TYPE" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"DEL PEAK 11(7Q36.2) WILD-TYPE" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
"DEL PEAK 11(7Q36.2) WILD-TYPE" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
"DEL PEAK 11(7Q36.2) WILD-TYPE" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "DEL PEAK 11(7Q36.2) MUTATED"   "DEL PEAK 11(7Q36.2) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
  "DEL PEAK 11(7Q36.2) MUTATED"   "DEL PEAK 11(7Q36.2) MUTATED" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "DEL PEAK 11(7Q36.2) MUTATED" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
"DEL PEAK 11(7Q36.2) WILD-TYPE"   "DEL PEAK 11(7Q36.2) MUTATED" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
  "DEL PEAK 11(7Q36.2) MUTATED"   "DEL PEAK 11(7Q36.2) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
"DEL PEAK 11(7Q36.2) WILD-TYPE"   "DEL PEAK 11(7Q36.2) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
"DEL PEAK 11(7Q36.2) WILD-TYPE"   "DEL PEAK 11(7Q36.2) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
"DEL PEAK 11(7Q36.2) WILD-TYPE" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"DEL PEAK 11(7Q36.2) WILD-TYPE"   "DEL PEAK 11(7Q36.2) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK 11(7Q36.2) MUTATED" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK 11(7Q36.2) WILD-TYPE" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK 11(7Q36.2) WILD-TYPE" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
"DEL PEAK 11(7Q36.2) WILD-TYPE" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"DEL PEAK 11(7Q36.2) WILD-TYPE" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
"DEL PEAK 11(7Q36.2) WILD-TYPE" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
"DEL PEAK 11(7Q36.2) WILD-TYPE" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "DEL PEAK 11(7Q36.2) MUTATED"   "DEL PEAK 11(7Q36.2) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
  "DEL PEAK 11(7Q36.2) MUTATED"   "DEL PEAK 11(7Q36.2) MUTATED" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "DEL PEAK 11(7Q36.2) MUTATED" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
"DEL PEAK 11(7Q36.2) WILD-TYPE"   "DEL PEAK 11(7Q36.2) MUTATED" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
  "DEL PEAK 11(7Q36.2) MUTATED"   "DEL PEAK 11(7Q36.2) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
"DEL PEAK 11(7Q36.2) WILD-TYPE"   "DEL PEAK 11(7Q36.2) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
"DEL PEAK 11(7Q36.2) WILD-TYPE"   "DEL PEAK 11(7Q36.2) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
"DEL PEAK 11(7Q36.2) WILD-TYPE" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"DEL PEAK 11(7Q36.2) WILD-TYPE"   "DEL PEAK 11(7Q36.2) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK 11(7Q36.2) MUTATED" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK 11(7Q36.2) WILD-TYPE" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK 11(7Q36.2) WILD-TYPE" "DEL PEAK 11(7Q36.2) WILD-TYPE" 
[1] "hr=" "3.8"
D35V2, continuous

Clustering(36) Variable = DEL PEAK 12(8P21.3) MUTATION ANALYSIS
D36V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 12(8P21.3) MUTATED    8 10
  DEL PEAK 12(8P21.3) WILD-TYPE  5  9
  DEL PEAK 12(8P21.3) MUTATED DEL PEAK 12(8P21.3) WILD-TYPE 
                           18                            14 
  DEL PEAK 12(8P21.3) MUTATED DEL PEAK 12(8P21.3) WILD-TYPE 
                           10                             9 
$`DEL PEAK 12(8P21.3) MUTATED`
TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59E 
       18.08        24.00        22.52        69.63        50.17        14.70 
TCGA-N5-A59F TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-NA-A4QW 
       11.87        13.94        14.40         7.20         4.77        74.33 
TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF 
       27.39         3.72        85.35        10.42        23.47         5.49 

$`DEL PEAK 12(8P21.3) WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RS TCGA-N5-A4RV 
       52.27         4.64        47.31         4.87        29.95        59.70 
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A56S TCGA-NA-A4R1 TCGA-ND-A4WC 
       26.63        13.71        16.34         9.70         6.64        15.16 
TCGA-NG-A4VW TCGA-QM-A5NM 
       31.17         5.42 

  DEL PEAK 12(8P21.3) MUTATED DEL PEAK 12(8P21.3) WILD-TYPE 
                         3.72                          4.64 
  DEL PEAK 12(8P21.3) MUTATED DEL PEAK 12(8P21.3) WILD-TYPE 
                        85.35                         59.70 
  DEL PEAK 12(8P21.3) MUTATED DEL PEAK 12(8P21.3) WILD-TYPE 
                        16.39                         15.75 
[1] "3.7 - 85.3 (16.4)" "4.6 - 59.7 (15.8)"
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
"DEL PEAK 12(8P21.3) WILD-TYPE" "DEL PEAK 12(8P21.3) WILD-TYPE" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"DEL PEAK 12(8P21.3) WILD-TYPE"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
"DEL PEAK 12(8P21.3) WILD-TYPE"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
  "DEL PEAK 12(8P21.3) MUTATED" "DEL PEAK 12(8P21.3) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "DEL PEAK 12(8P21.3) MUTATED"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
"DEL PEAK 12(8P21.3) WILD-TYPE"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "DEL PEAK 12(8P21.3) MUTATED" "DEL PEAK 12(8P21.3) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
"DEL PEAK 12(8P21.3) WILD-TYPE" "DEL PEAK 12(8P21.3) WILD-TYPE" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
  "DEL PEAK 12(8P21.3) MUTATED"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "DEL PEAK 12(8P21.3) MUTATED"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
"DEL PEAK 12(8P21.3) WILD-TYPE"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "DEL PEAK 12(8P21.3) MUTATED"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"DEL PEAK 12(8P21.3) WILD-TYPE"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK 12(8P21.3) MUTATED"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK 12(8P21.3) WILD-TYPE"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK 12(8P21.3) WILD-TYPE" "DEL PEAK 12(8P21.3) WILD-TYPE" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
"DEL PEAK 12(8P21.3) WILD-TYPE" "DEL PEAK 12(8P21.3) WILD-TYPE" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"DEL PEAK 12(8P21.3) WILD-TYPE"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
"DEL PEAK 12(8P21.3) WILD-TYPE"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
  "DEL PEAK 12(8P21.3) MUTATED" "DEL PEAK 12(8P21.3) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "DEL PEAK 12(8P21.3) MUTATED"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
"DEL PEAK 12(8P21.3) WILD-TYPE"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "DEL PEAK 12(8P21.3) MUTATED" "DEL PEAK 12(8P21.3) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
"DEL PEAK 12(8P21.3) WILD-TYPE" "DEL PEAK 12(8P21.3) WILD-TYPE" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
  "DEL PEAK 12(8P21.3) MUTATED"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "DEL PEAK 12(8P21.3) MUTATED"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
"DEL PEAK 12(8P21.3) WILD-TYPE"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "DEL PEAK 12(8P21.3) MUTATED"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"DEL PEAK 12(8P21.3) WILD-TYPE"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK 12(8P21.3) MUTATED"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK 12(8P21.3) WILD-TYPE"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK 12(8P21.3) WILD-TYPE" "DEL PEAK 12(8P21.3) WILD-TYPE" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
"DEL PEAK 12(8P21.3) WILD-TYPE" "DEL PEAK 12(8P21.3) WILD-TYPE" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"DEL PEAK 12(8P21.3) WILD-TYPE"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
"DEL PEAK 12(8P21.3) WILD-TYPE"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
  "DEL PEAK 12(8P21.3) MUTATED" "DEL PEAK 12(8P21.3) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "DEL PEAK 12(8P21.3) MUTATED"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
"DEL PEAK 12(8P21.3) WILD-TYPE"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "DEL PEAK 12(8P21.3) MUTATED" "DEL PEAK 12(8P21.3) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
"DEL PEAK 12(8P21.3) WILD-TYPE" "DEL PEAK 12(8P21.3) WILD-TYPE" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
  "DEL PEAK 12(8P21.3) MUTATED"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "DEL PEAK 12(8P21.3) MUTATED"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
"DEL PEAK 12(8P21.3) WILD-TYPE"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "DEL PEAK 12(8P21.3) MUTATED"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"DEL PEAK 12(8P21.3) WILD-TYPE"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK 12(8P21.3) MUTATED"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK 12(8P21.3) WILD-TYPE"   "DEL PEAK 12(8P21.3) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK 12(8P21.3) WILD-TYPE" "DEL PEAK 12(8P21.3) WILD-TYPE" 
[1] "hr=" "1.1"
D36V2, continuous

Clustering(37) Variable = DEL PEAK 13(9P23) MUTATION ANALYSIS
D37V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 13(9P23) MUTATED    6 10
  DEL PEAK 13(9P23) WILD-TYPE  7  9
  DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE 
                         16                          16 
  DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE 
                         10                           9 
$`DEL PEAK 13(9P23) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RS TCGA-N5-A4RV TCGA-N5-A59E 
       52.27        18.08         4.87        29.95        59.70        14.70 
TCGA-N5-A59F TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A56S TCGA-NA-A4QW 
       11.87        16.34        13.94        14.40         9.70        74.33 
TCGA-NA-A4QX TCGA-NA-A4QY TCGA-ND-A4WA TCGA-QM-A5NM 
       27.39         3.72        23.47         5.42 

$`DEL PEAK 13(9P23) WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RT TCGA-N5-A4RU 
        4.64        47.31        24.00        22.52        69.63        50.17 
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-NA-A4R1 TCGA-NA-A5I1 
       26.63        13.71         7.20         4.77         6.64        85.35 
TCGA-ND-A4W6 TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW 
       10.42        15.16         5.49        31.17 

  DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE 
                       3.72                        4.64 
  DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE 
                      74.33                       85.35 
  DEL PEAK 13(9P23) MUTATED DEL PEAK 13(9P23) WILD-TYPE 
                      15.52                       18.84 
[1] "3.7 - 74.3 (15.5)" "4.6 - 85.3 (18.8)"
                 TCGA-N5-A4RA                  TCGA-N5-A4RD 
  "DEL PEAK 13(9P23) MUTATED" "DEL PEAK 13(9P23) WILD-TYPE" 
                 TCGA-N5-A4RF                  TCGA-N5-A4RJ 
"DEL PEAK 13(9P23) WILD-TYPE"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-N5-A4RM                  TCGA-N5-A4RN 
  "DEL PEAK 13(9P23) MUTATED" "DEL PEAK 13(9P23) WILD-TYPE" 
                 TCGA-N5-A4RO                  TCGA-N5-A4RS 
"DEL PEAK 13(9P23) WILD-TYPE"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RU 
"DEL PEAK 13(9P23) WILD-TYPE" "DEL PEAK 13(9P23) WILD-TYPE" 
                 TCGA-N5-A4RV                  TCGA-N5-A59E 
  "DEL PEAK 13(9P23) MUTATED"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-N5-A59F                  TCGA-N8-A4PI 
  "DEL PEAK 13(9P23) MUTATED" "DEL PEAK 13(9P23) WILD-TYPE" 
                 TCGA-N8-A4PL                  TCGA-N8-A4PM 
"DEL PEAK 13(9P23) WILD-TYPE"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-N8-A4PN                  TCGA-N8-A4PO 
  "DEL PEAK 13(9P23) MUTATED"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-N8-A4PP                  TCGA-N8-A4PQ 
"DEL PEAK 13(9P23) WILD-TYPE" "DEL PEAK 13(9P23) WILD-TYPE" 
                 TCGA-N8-A56S                  TCGA-NA-A4QW 
  "DEL PEAK 13(9P23) MUTATED"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-NA-A4QX                  TCGA-NA-A4QY 
  "DEL PEAK 13(9P23) MUTATED"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-NA-A4R1                  TCGA-NA-A5I1 
"DEL PEAK 13(9P23) WILD-TYPE" "DEL PEAK 13(9P23) WILD-TYPE" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"DEL PEAK 13(9P23) WILD-TYPE"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"DEL PEAK 13(9P23) WILD-TYPE" "DEL PEAK 13(9P23) WILD-TYPE" 
                 TCGA-NG-A4VW                  TCGA-QM-A5NM 
"DEL PEAK 13(9P23) WILD-TYPE"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-N5-A4RA                  TCGA-N5-A4RD 
  "DEL PEAK 13(9P23) MUTATED" "DEL PEAK 13(9P23) WILD-TYPE" 
                 TCGA-N5-A4RF                  TCGA-N5-A4RJ 
"DEL PEAK 13(9P23) WILD-TYPE"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-N5-A4RM                  TCGA-N5-A4RN 
  "DEL PEAK 13(9P23) MUTATED" "DEL PEAK 13(9P23) WILD-TYPE" 
                 TCGA-N5-A4RO                  TCGA-N5-A4RS 
"DEL PEAK 13(9P23) WILD-TYPE"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RU 
"DEL PEAK 13(9P23) WILD-TYPE" "DEL PEAK 13(9P23) WILD-TYPE" 
                 TCGA-N5-A4RV                  TCGA-N5-A59E 
  "DEL PEAK 13(9P23) MUTATED"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-N5-A59F                  TCGA-N8-A4PI 
  "DEL PEAK 13(9P23) MUTATED" "DEL PEAK 13(9P23) WILD-TYPE" 
                 TCGA-N8-A4PL                  TCGA-N8-A4PM 
"DEL PEAK 13(9P23) WILD-TYPE"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-N8-A4PN                  TCGA-N8-A4PO 
  "DEL PEAK 13(9P23) MUTATED"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-N8-A4PP                  TCGA-N8-A4PQ 
"DEL PEAK 13(9P23) WILD-TYPE" "DEL PEAK 13(9P23) WILD-TYPE" 
                 TCGA-N8-A56S                  TCGA-NA-A4QW 
  "DEL PEAK 13(9P23) MUTATED"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-NA-A4QX                  TCGA-NA-A4QY 
  "DEL PEAK 13(9P23) MUTATED"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-NA-A4R1                  TCGA-NA-A5I1 
"DEL PEAK 13(9P23) WILD-TYPE" "DEL PEAK 13(9P23) WILD-TYPE" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"DEL PEAK 13(9P23) WILD-TYPE"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"DEL PEAK 13(9P23) WILD-TYPE" "DEL PEAK 13(9P23) WILD-TYPE" 
                 TCGA-NG-A4VW                  TCGA-QM-A5NM 
"DEL PEAK 13(9P23) WILD-TYPE"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-N5-A4RA                  TCGA-N5-A4RD 
  "DEL PEAK 13(9P23) MUTATED" "DEL PEAK 13(9P23) WILD-TYPE" 
                 TCGA-N5-A4RF                  TCGA-N5-A4RJ 
"DEL PEAK 13(9P23) WILD-TYPE"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-N5-A4RM                  TCGA-N5-A4RN 
  "DEL PEAK 13(9P23) MUTATED" "DEL PEAK 13(9P23) WILD-TYPE" 
                 TCGA-N5-A4RO                  TCGA-N5-A4RS 
"DEL PEAK 13(9P23) WILD-TYPE"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RU 
"DEL PEAK 13(9P23) WILD-TYPE" "DEL PEAK 13(9P23) WILD-TYPE" 
                 TCGA-N5-A4RV                  TCGA-N5-A59E 
  "DEL PEAK 13(9P23) MUTATED"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-N5-A59F                  TCGA-N8-A4PI 
  "DEL PEAK 13(9P23) MUTATED" "DEL PEAK 13(9P23) WILD-TYPE" 
                 TCGA-N8-A4PL                  TCGA-N8-A4PM 
"DEL PEAK 13(9P23) WILD-TYPE"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-N8-A4PN                  TCGA-N8-A4PO 
  "DEL PEAK 13(9P23) MUTATED"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-N8-A4PP                  TCGA-N8-A4PQ 
"DEL PEAK 13(9P23) WILD-TYPE" "DEL PEAK 13(9P23) WILD-TYPE" 
                 TCGA-N8-A56S                  TCGA-NA-A4QW 
  "DEL PEAK 13(9P23) MUTATED"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-NA-A4QX                  TCGA-NA-A4QY 
  "DEL PEAK 13(9P23) MUTATED"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-NA-A4R1                  TCGA-NA-A5I1 
"DEL PEAK 13(9P23) WILD-TYPE" "DEL PEAK 13(9P23) WILD-TYPE" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"DEL PEAK 13(9P23) WILD-TYPE"   "DEL PEAK 13(9P23) MUTATED" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"DEL PEAK 13(9P23) WILD-TYPE" "DEL PEAK 13(9P23) WILD-TYPE" 
                 TCGA-NG-A4VW                  TCGA-QM-A5NM 
"DEL PEAK 13(9P23) WILD-TYPE"   "DEL PEAK 13(9P23) MUTATED" 
[1] "hr=" "1.1"
D37V2, continuous

Clustering(38) Variable = DEL PEAK 14(9Q21.13) MUTATION ANALYSIS
D38V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 14(9Q21.13) MUTATED   10 10
  DEL PEAK 14(9Q21.13) WILD-TYPE  3  9
  DEL PEAK 14(9Q21.13) MUTATED DEL PEAK 14(9Q21.13) WILD-TYPE 
                            20                             12 
  DEL PEAK 14(9Q21.13) MUTATED DEL PEAK 14(9Q21.13) WILD-TYPE 
                            10                              9 
$`DEL PEAK 14(9Q21.13) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RN TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N5-A59E 
       52.27        47.31        24.00        69.63        59.70        14.70 
TCGA-N5-A59F TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
       11.87        16.34        13.94        14.40         7.20         4.77 
TCGA-N8-A56S TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-ND-A4W6 TCGA-ND-A4WA 
        9.70        27.39         3.72         6.64        10.42        23.47 
TCGA-ND-A4WF TCGA-QM-A5NM 
        5.49         5.42 

$`DEL PEAK 14(9Q21.13) WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RU 
        4.64        18.08         4.87        22.52        29.95        50.17 
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-NA-A4QW TCGA-NA-A5I1 TCGA-ND-A4WC TCGA-NG-A4VW 
       26.63        13.71        74.33        85.35        15.16        31.17 

  DEL PEAK 14(9Q21.13) MUTATED DEL PEAK 14(9Q21.13) WILD-TYPE 
                          3.72                           4.64 
  DEL PEAK 14(9Q21.13) MUTATED DEL PEAK 14(9Q21.13) WILD-TYPE 
                         69.63                          85.35 
  DEL PEAK 14(9Q21.13) MUTATED DEL PEAK 14(9Q21.13) WILD-TYPE 
                        14.170                         24.575 
[1] "3.7 - 69.6 (14.2)" "4.6 - 85.3 (24.6)"
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 14(9Q21.13) MUTATED" "DEL PEAK 14(9Q21.13) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK 14(9Q21.13) MUTATED" "DEL PEAK 14(9Q21.13) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
"DEL PEAK 14(9Q21.13) WILD-TYPE"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"DEL PEAK 14(9Q21.13) WILD-TYPE" "DEL PEAK 14(9Q21.13) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "DEL PEAK 14(9Q21.13) MUTATED" "DEL PEAK 14(9Q21.13) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 14(9Q21.13) MUTATED" "DEL PEAK 14(9Q21.13) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"DEL PEAK 14(9Q21.13) WILD-TYPE"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "DEL PEAK 14(9Q21.13) MUTATED" "DEL PEAK 14(9Q21.13) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 14(9Q21.13) MUTATED" "DEL PEAK 14(9Q21.13) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 14(9Q21.13) WILD-TYPE"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 14(9Q21.13) WILD-TYPE"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 14(9Q21.13) MUTATED" "DEL PEAK 14(9Q21.13) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK 14(9Q21.13) MUTATED" "DEL PEAK 14(9Q21.13) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
"DEL PEAK 14(9Q21.13) WILD-TYPE"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"DEL PEAK 14(9Q21.13) WILD-TYPE" "DEL PEAK 14(9Q21.13) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "DEL PEAK 14(9Q21.13) MUTATED" "DEL PEAK 14(9Q21.13) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 14(9Q21.13) MUTATED" "DEL PEAK 14(9Q21.13) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"DEL PEAK 14(9Q21.13) WILD-TYPE"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "DEL PEAK 14(9Q21.13) MUTATED" "DEL PEAK 14(9Q21.13) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 14(9Q21.13) MUTATED" "DEL PEAK 14(9Q21.13) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 14(9Q21.13) WILD-TYPE"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 14(9Q21.13) WILD-TYPE"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 14(9Q21.13) MUTATED" "DEL PEAK 14(9Q21.13) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK 14(9Q21.13) MUTATED" "DEL PEAK 14(9Q21.13) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
"DEL PEAK 14(9Q21.13) WILD-TYPE"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"DEL PEAK 14(9Q21.13) WILD-TYPE" "DEL PEAK 14(9Q21.13) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "DEL PEAK 14(9Q21.13) MUTATED" "DEL PEAK 14(9Q21.13) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 14(9Q21.13) MUTATED" "DEL PEAK 14(9Q21.13) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"DEL PEAK 14(9Q21.13) WILD-TYPE"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "DEL PEAK 14(9Q21.13) MUTATED" "DEL PEAK 14(9Q21.13) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 14(9Q21.13) MUTATED" "DEL PEAK 14(9Q21.13) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 14(9Q21.13) MUTATED"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 14(9Q21.13) WILD-TYPE"   "DEL PEAK 14(9Q21.13) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 14(9Q21.13) WILD-TYPE"   "DEL PEAK 14(9Q21.13) MUTATED" 
[1] "hr=" "1.1"
D38V2, continuous

Clustering(39) Variable = DEL PEAK 15(9Q33.3) MUTATION ANALYSIS
D39V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 15(9Q33.3) MUTATED   10  9
  DEL PEAK 15(9Q33.3) WILD-TYPE  3 10
  DEL PEAK 15(9Q33.3) MUTATED DEL PEAK 15(9Q33.3) WILD-TYPE 
                           19                            13 
  DEL PEAK 15(9Q33.3) MUTATED DEL PEAK 15(9Q33.3) WILD-TYPE 
                            9                            10 
$`DEL PEAK 15(9Q33.3) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N5-A59E 
       52.27        18.08        24.00        69.63        59.70        14.70 
TCGA-N5-A59F TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
       11.87        16.34        13.94        14.40         7.20         4.77 
TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF 
       74.33        27.39         3.72        10.42        23.47         5.49 
TCGA-QM-A5NM 
        5.42 

$`DEL PEAK 15(9Q33.3) WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RU 
        4.64        47.31         4.87        22.52        29.95        50.17 
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A56S TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WC 
       26.63        13.71         9.70         6.64        85.35        15.16 
TCGA-NG-A4VW 
       31.17 

  DEL PEAK 15(9Q33.3) MUTATED DEL PEAK 15(9Q33.3) WILD-TYPE 
                         3.72                          4.64 
  DEL PEAK 15(9Q33.3) MUTATED DEL PEAK 15(9Q33.3) WILD-TYPE 
                        74.33                         85.35 
  DEL PEAK 15(9Q33.3) MUTATED DEL PEAK 15(9Q33.3) WILD-TYPE 
                        14.70                         22.52 
[1] "3.7 - 74.3 (14.7)" "4.6 - 85.3 (22.5)"
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "DEL PEAK 15(9Q33.3) MUTATED" "DEL PEAK 15(9Q33.3) WILD-TYPE" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"DEL PEAK 15(9Q33.3) WILD-TYPE"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
"DEL PEAK 15(9Q33.3) WILD-TYPE"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
"DEL PEAK 15(9Q33.3) WILD-TYPE" "DEL PEAK 15(9Q33.3) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "DEL PEAK 15(9Q33.3) MUTATED" "DEL PEAK 15(9Q33.3) WILD-TYPE" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
  "DEL PEAK 15(9Q33.3) MUTATED"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "DEL PEAK 15(9Q33.3) MUTATED" "DEL PEAK 15(9Q33.3) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
"DEL PEAK 15(9Q33.3) WILD-TYPE"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
  "DEL PEAK 15(9Q33.3) MUTATED"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "DEL PEAK 15(9Q33.3) MUTATED"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
"DEL PEAK 15(9Q33.3) WILD-TYPE"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "DEL PEAK 15(9Q33.3) MUTATED"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"DEL PEAK 15(9Q33.3) WILD-TYPE" "DEL PEAK 15(9Q33.3) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK 15(9Q33.3) MUTATED"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK 15(9Q33.3) WILD-TYPE"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK 15(9Q33.3) WILD-TYPE"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "DEL PEAK 15(9Q33.3) MUTATED" "DEL PEAK 15(9Q33.3) WILD-TYPE" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"DEL PEAK 15(9Q33.3) WILD-TYPE"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
"DEL PEAK 15(9Q33.3) WILD-TYPE"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
"DEL PEAK 15(9Q33.3) WILD-TYPE" "DEL PEAK 15(9Q33.3) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "DEL PEAK 15(9Q33.3) MUTATED" "DEL PEAK 15(9Q33.3) WILD-TYPE" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
  "DEL PEAK 15(9Q33.3) MUTATED"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "DEL PEAK 15(9Q33.3) MUTATED" "DEL PEAK 15(9Q33.3) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
"DEL PEAK 15(9Q33.3) WILD-TYPE"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
  "DEL PEAK 15(9Q33.3) MUTATED"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "DEL PEAK 15(9Q33.3) MUTATED"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
"DEL PEAK 15(9Q33.3) WILD-TYPE"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "DEL PEAK 15(9Q33.3) MUTATED"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"DEL PEAK 15(9Q33.3) WILD-TYPE" "DEL PEAK 15(9Q33.3) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK 15(9Q33.3) MUTATED"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK 15(9Q33.3) WILD-TYPE"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK 15(9Q33.3) WILD-TYPE"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
  "DEL PEAK 15(9Q33.3) MUTATED" "DEL PEAK 15(9Q33.3) WILD-TYPE" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"DEL PEAK 15(9Q33.3) WILD-TYPE"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
"DEL PEAK 15(9Q33.3) WILD-TYPE"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
"DEL PEAK 15(9Q33.3) WILD-TYPE" "DEL PEAK 15(9Q33.3) WILD-TYPE" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "DEL PEAK 15(9Q33.3) MUTATED" "DEL PEAK 15(9Q33.3) WILD-TYPE" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
  "DEL PEAK 15(9Q33.3) MUTATED"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
  "DEL PEAK 15(9Q33.3) MUTATED" "DEL PEAK 15(9Q33.3) WILD-TYPE" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
"DEL PEAK 15(9Q33.3) WILD-TYPE"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
  "DEL PEAK 15(9Q33.3) MUTATED"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "DEL PEAK 15(9Q33.3) MUTATED"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
"DEL PEAK 15(9Q33.3) WILD-TYPE"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "DEL PEAK 15(9Q33.3) MUTATED"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
"DEL PEAK 15(9Q33.3) WILD-TYPE" "DEL PEAK 15(9Q33.3) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK 15(9Q33.3) MUTATED"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK 15(9Q33.3) WILD-TYPE"   "DEL PEAK 15(9Q33.3) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK 15(9Q33.3) WILD-TYPE"   "DEL PEAK 15(9Q33.3) MUTATED" 
[1] "hr=" "1.5"
D39V2, continuous

Clustering(40) Variable = DEL PEAK 16(10Q21.1) MUTATION ANALYSIS
D40V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 16(10Q21.1) MUTATED    3  6
  DEL PEAK 16(10Q21.1) WILD-TYPE 10 13
  DEL PEAK 16(10Q21.1) MUTATED DEL PEAK 16(10Q21.1) WILD-TYPE 
                             9                             23 
  DEL PEAK 16(10Q21.1) MUTATED DEL PEAK 16(10Q21.1) WILD-TYPE 
                             6                             13 
$`DEL PEAK 16(10Q21.1) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RJ TCGA-N5-A4RO TCGA-N5-A4RT TCGA-N8-A4PM TCGA-NA-A4QX 
       52.27        18.08        22.52        69.63        16.34        27.39 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WF 
        6.64        85.35         5.49 

$`DEL PEAK 16(10Q21.1) WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RS TCGA-N5-A4RU 
        4.64        47.31         4.87        24.00        29.95        50.17 
TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PN 
       59.70        14.70        11.87        26.63        13.71        13.94 
TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QY 
       14.40         7.20         4.77         9.70        74.33         3.72 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-NG-A4VW TCGA-QM-A5NM 
       10.42        23.47        15.16        31.17         5.42 

  DEL PEAK 16(10Q21.1) MUTATED DEL PEAK 16(10Q21.1) WILD-TYPE 
                          5.49                           3.72 
  DEL PEAK 16(10Q21.1) MUTATED DEL PEAK 16(10Q21.1) WILD-TYPE 
                         85.35                          74.33 
  DEL PEAK 16(10Q21.1) MUTATED DEL PEAK 16(10Q21.1) WILD-TYPE 
                         22.52                          14.40 
[1] "5.5 - 85.3 (22.5)" "3.7 - 74.3 (14.4)"
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 16(10Q21.1) MUTATED" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"DEL PEAK 16(10Q21.1) WILD-TYPE"   "DEL PEAK 16(10Q21.1) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 16(10Q21.1) MUTATED" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "DEL PEAK 16(10Q21.1) MUTATED" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"DEL PEAK 16(10Q21.1) WILD-TYPE"   "DEL PEAK 16(10Q21.1) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "DEL PEAK 16(10Q21.1) MUTATED" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 16(10Q21.1) MUTATED"   "DEL PEAK 16(10Q21.1) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 16(10Q21.1) WILD-TYPE"   "DEL PEAK 16(10Q21.1) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 16(10Q21.1) MUTATED" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"DEL PEAK 16(10Q21.1) WILD-TYPE"   "DEL PEAK 16(10Q21.1) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 16(10Q21.1) MUTATED" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "DEL PEAK 16(10Q21.1) MUTATED" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"DEL PEAK 16(10Q21.1) WILD-TYPE"   "DEL PEAK 16(10Q21.1) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "DEL PEAK 16(10Q21.1) MUTATED" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 16(10Q21.1) MUTATED"   "DEL PEAK 16(10Q21.1) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 16(10Q21.1) WILD-TYPE"   "DEL PEAK 16(10Q21.1) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 16(10Q21.1) MUTATED" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"DEL PEAK 16(10Q21.1) WILD-TYPE"   "DEL PEAK 16(10Q21.1) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 16(10Q21.1) MUTATED" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "DEL PEAK 16(10Q21.1) MUTATED" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"DEL PEAK 16(10Q21.1) WILD-TYPE"   "DEL PEAK 16(10Q21.1) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "DEL PEAK 16(10Q21.1) MUTATED" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 16(10Q21.1) MUTATED"   "DEL PEAK 16(10Q21.1) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 16(10Q21.1) WILD-TYPE"   "DEL PEAK 16(10Q21.1) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 16(10Q21.1) WILD-TYPE" "DEL PEAK 16(10Q21.1) WILD-TYPE" 
[1] "hr=" "1.2"
D40V2, continuous

Clustering(41) Variable = DEL PEAK 17(10Q23.31) MUTATION ANALYSIS
D41V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 17(10Q23.31) MUTATED    2  8
  DEL PEAK 17(10Q23.31) WILD-TYPE 11 11
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                             10                              22 
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                              8                              11 
$`DEL PEAK 17(10Q23.31) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RT 
       52.27         4.64        18.08         4.87        22.52        69.63 
TCGA-N8-A4PI TCGA-N8-A4PM TCGA-NA-A4QX TCGA-NA-A4R1 
       26.63        16.34        27.39         6.64 

$`DEL PEAK 17(10Q23.31) WILD-TYPE`
TCGA-N5-A4RF TCGA-N5-A4RN TCGA-N5-A4RS TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E 
       47.31        24.00        29.95        50.17        59.70        14.70 
TCGA-N5-A59F TCGA-N8-A4PL TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
       11.87        13.71        13.94        14.40         7.20         4.77 
TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA 
        9.70        74.33         3.72        85.35        10.42        23.47 
TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
       15.16         5.49        31.17         5.42 

  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                           4.64                            3.72 
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                          69.63                           85.35 
  DEL PEAK 17(10Q23.31) MUTATED DEL PEAK 17(10Q23.31) WILD-TYPE 
                          20.30                           14.55 
[1] "4.6 - 69.6 (20.3)" "3.7 - 85.3 (14.6)"
                     TCGA-N5-A4RA                      TCGA-N5-A4RD 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-N5-A4RF                      TCGA-N5-A4RJ 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-N5-A4RM                      TCGA-N5-A4RN 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N5-A4RO                      TCGA-N5-A4RS 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RU 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N5-A4RV                      TCGA-N5-A59E 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N5-A59F                      TCGA-N8-A4PI 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-N8-A4PL                      TCGA-N8-A4PM 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-N8-A4PN                      TCGA-N8-A4PO 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N8-A4PP                      TCGA-N8-A4PQ 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N8-A56S                      TCGA-NA-A4QW 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-NA-A4QX                      TCGA-NA-A4QY 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-NA-A4R1                      TCGA-NA-A5I1 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-NG-A4VW                      TCGA-QM-A5NM 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N5-A4RA                      TCGA-N5-A4RD 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-N5-A4RF                      TCGA-N5-A4RJ 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-N5-A4RM                      TCGA-N5-A4RN 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N5-A4RO                      TCGA-N5-A4RS 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RU 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N5-A4RV                      TCGA-N5-A59E 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N5-A59F                      TCGA-N8-A4PI 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-N8-A4PL                      TCGA-N8-A4PM 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-N8-A4PN                      TCGA-N8-A4PO 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N8-A4PP                      TCGA-N8-A4PQ 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N8-A56S                      TCGA-NA-A4QW 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-NA-A4QX                      TCGA-NA-A4QY 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-NA-A4R1                      TCGA-NA-A5I1 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-NG-A4VW                      TCGA-QM-A5NM 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N5-A4RA                      TCGA-N5-A4RD 
  "DEL PEAK 17(10Q23.31) MUTATED"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-N5-A4RF                      TCGA-N5-A4RJ 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-N5-A4RM                      TCGA-N5-A4RN 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N5-A4RO                      TCGA-N5-A4RS 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RU 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N5-A4RV                      TCGA-N5-A59E 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N5-A59F                      TCGA-N8-A4PI 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-N8-A4PL                      TCGA-N8-A4PM 
"DEL PEAK 17(10Q23.31) WILD-TYPE"   "DEL PEAK 17(10Q23.31) MUTATED" 
                     TCGA-N8-A4PN                      TCGA-N8-A4PO 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N8-A4PP                      TCGA-N8-A4PQ 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-N8-A56S                      TCGA-NA-A4QW 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-NA-A4QX                      TCGA-NA-A4QY 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-NA-A4R1                      TCGA-NA-A5I1 
  "DEL PEAK 17(10Q23.31) MUTATED" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
                     TCGA-NG-A4VW                      TCGA-QM-A5NM 
"DEL PEAK 17(10Q23.31) WILD-TYPE" "DEL PEAK 17(10Q23.31) WILD-TYPE" 
[1] "hr=" "1.5"
D41V2, continuous

Clustering(42) Variable = DEL PEAK 18(11P15.5) MUTATION ANALYSIS
D42V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 18(11P15.5) MUTATED    2  9
  DEL PEAK 18(11P15.5) WILD-TYPE 11 10
  DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE 
                            11                             21 
  DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE 
                             9                             10 
$`DEL PEAK 18(11P15.5) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RM TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI 
       52.27         4.64         4.87        14.70        11.87        26.63 
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-NA-A4QW TCGA-NA-A4R1 TCGA-ND-A4WA 
       13.71        16.34        74.33         6.64        23.47 

$`DEL PEAK 18(11P15.5) WILD-TYPE`
TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT 
       47.31        18.08        24.00        22.52        29.95        69.63 
TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
       50.17        59.70        13.94        14.40         7.20         4.77 
TCGA-N8-A56S TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WC 
        9.70        27.39         3.72        85.35        10.42        15.16 
TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
        5.49        31.17         5.42 

  DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE 
                          4.64                           3.72 
  DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE 
                         74.33                          85.35 
  DEL PEAK 18(11P15.5) MUTATED DEL PEAK 18(11P15.5) WILD-TYPE 
                         14.70                          18.08 
[1] "4.6 - 74.3 (14.7)" "3.7 - 85.3 (18.1)"
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK 18(11P15.5) MUTATED"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 18(11P15.5) MUTATED" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 18(11P15.5) WILD-TYPE"   "DEL PEAK 18(11P15.5) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 18(11P15.5) WILD-TYPE" "DEL PEAK 18(11P15.5) WILD-TYPE" 
[1] "hr=" "2"  
D42V2, continuous

Clustering(43) Variable = DEL PEAK 19(11Q14.1) MUTATION ANALYSIS
D43V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 19(11Q14.1) MUTATED    7 10
  DEL PEAK 19(11Q14.1) WILD-TYPE  6  9
  DEL PEAK 19(11Q14.1) MUTATED DEL PEAK 19(11Q14.1) WILD-TYPE 
                            17                             15 
  DEL PEAK 19(11Q14.1) MUTATED DEL PEAK 19(11Q14.1) WILD-TYPE 
                            10                              9 
$`DEL PEAK 19(11Q14.1) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.27         4.64        47.31         4.87        24.00        22.52 
TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N8-A4PQ 
       59.70        14.70        11.87        13.71        14.40         4.77 
TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF TCGA-QM-A5NM 
       85.35        10.42        23.47         5.49         5.42 

$`DEL PEAK 19(11Q14.1) WILD-TYPE`
TCGA-N5-A4RJ TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N8-A4PI TCGA-N8-A4PM 
       18.08        29.95        69.63        50.17        26.63        16.34 
TCGA-N8-A4PN TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY 
       13.94         7.20         9.70        74.33        27.39         3.72 
TCGA-NA-A4R1 TCGA-ND-A4WC TCGA-NG-A4VW 
        6.64        15.16        31.17 

  DEL PEAK 19(11Q14.1) MUTATED DEL PEAK 19(11Q14.1) WILD-TYPE 
                          4.64                           3.72 
  DEL PEAK 19(11Q14.1) MUTATED DEL PEAK 19(11Q14.1) WILD-TYPE 
                         85.35                          74.33 
  DEL PEAK 19(11Q14.1) MUTATED DEL PEAK 19(11Q14.1) WILD-TYPE 
                         14.40                          18.08 
[1] "4.6 - 85.3 (14.4)" "3.7 - 74.3 (18.1)"
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 19(11Q14.1) MUTATED"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK 19(11Q14.1) MUTATED" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 19(11Q14.1) MUTATED"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 19(11Q14.1) MUTATED" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"DEL PEAK 19(11Q14.1) WILD-TYPE" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "DEL PEAK 19(11Q14.1) MUTATED"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 19(11Q14.1) MUTATED" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK 19(11Q14.1) MUTATED" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK 19(11Q14.1) WILD-TYPE"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"DEL PEAK 19(11Q14.1) WILD-TYPE"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 19(11Q14.1) WILD-TYPE" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"DEL PEAK 19(11Q14.1) WILD-TYPE" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"DEL PEAK 19(11Q14.1) WILD-TYPE"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 19(11Q14.1) MUTATED"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 19(11Q14.1) WILD-TYPE"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 19(11Q14.1) WILD-TYPE"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 19(11Q14.1) MUTATED"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK 19(11Q14.1) MUTATED" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 19(11Q14.1) MUTATED"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 19(11Q14.1) MUTATED" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"DEL PEAK 19(11Q14.1) WILD-TYPE" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "DEL PEAK 19(11Q14.1) MUTATED"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 19(11Q14.1) MUTATED" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK 19(11Q14.1) MUTATED" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK 19(11Q14.1) WILD-TYPE"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"DEL PEAK 19(11Q14.1) WILD-TYPE"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 19(11Q14.1) WILD-TYPE" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"DEL PEAK 19(11Q14.1) WILD-TYPE" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"DEL PEAK 19(11Q14.1) WILD-TYPE"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 19(11Q14.1) MUTATED"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 19(11Q14.1) WILD-TYPE"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 19(11Q14.1) WILD-TYPE"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 19(11Q14.1) MUTATED"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK 19(11Q14.1) MUTATED" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 19(11Q14.1) MUTATED"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 19(11Q14.1) MUTATED" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"DEL PEAK 19(11Q14.1) WILD-TYPE" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "DEL PEAK 19(11Q14.1) MUTATED"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 19(11Q14.1) MUTATED" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK 19(11Q14.1) MUTATED" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK 19(11Q14.1) WILD-TYPE"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"DEL PEAK 19(11Q14.1) WILD-TYPE"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 19(11Q14.1) WILD-TYPE" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"DEL PEAK 19(11Q14.1) WILD-TYPE" "DEL PEAK 19(11Q14.1) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"DEL PEAK 19(11Q14.1) WILD-TYPE"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 19(11Q14.1) MUTATED"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 19(11Q14.1) WILD-TYPE"   "DEL PEAK 19(11Q14.1) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 19(11Q14.1) WILD-TYPE"   "DEL PEAK 19(11Q14.1) MUTATED" 
[1] "hr=" "1.2"
D43V2, continuous

Clustering(44) Variable = DEL PEAK 20(11Q24.2) MUTATION ANALYSIS
D44V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 20(11Q24.2) MUTATED    6 12
  DEL PEAK 20(11Q24.2) WILD-TYPE  7  7
  DEL PEAK 20(11Q24.2) MUTATED DEL PEAK 20(11Q24.2) WILD-TYPE 
                            18                             14 
  DEL PEAK 20(11Q24.2) MUTATED DEL PEAK 20(11Q24.2) WILD-TYPE 
                            12                              7 
$`DEL PEAK 20(11Q24.2) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RU 
       52.27         4.64        47.31         4.87        22.52        50.17 
TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N8-A4PP 
       59.70        14.70        11.87        13.71        14.40         7.20 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF TCGA-QM-A5NM 
        6.64        85.35        10.42        23.47         5.49         5.42 

$`DEL PEAK 20(11Q24.2) WILD-TYPE`
TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N8-A4PI TCGA-N8-A4PM 
       18.08        24.00        29.95        69.63        26.63        16.34 
TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY 
       13.94         4.77         9.70        74.33        27.39         3.72 
TCGA-ND-A4WC TCGA-NG-A4VW 
       15.16        31.17 

  DEL PEAK 20(11Q24.2) MUTATED DEL PEAK 20(11Q24.2) WILD-TYPE 
                          4.64                           3.72 
  DEL PEAK 20(11Q24.2) MUTATED DEL PEAK 20(11Q24.2) WILD-TYPE 
                         85.35                          74.33 
  DEL PEAK 20(11Q24.2) MUTATED DEL PEAK 20(11Q24.2) WILD-TYPE 
                        14.055                         21.040 
[1] "4.6 - 85.3 (14.1)" "3.7 - 74.3 (21.0)"
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 20(11Q24.2) MUTATED"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK 20(11Q24.2) MUTATED" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 20(11Q24.2) MUTATED" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 20(11Q24.2) MUTATED" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"DEL PEAK 20(11Q24.2) WILD-TYPE"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "DEL PEAK 20(11Q24.2) MUTATED"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 20(11Q24.2) MUTATED" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK 20(11Q24.2) MUTATED" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK 20(11Q24.2) WILD-TYPE"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 20(11Q24.2) MUTATED" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 20(11Q24.2) WILD-TYPE" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"DEL PEAK 20(11Q24.2) WILD-TYPE" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 20(11Q24.2) MUTATED"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 20(11Q24.2) MUTATED"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 20(11Q24.2) WILD-TYPE"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 20(11Q24.2) WILD-TYPE"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 20(11Q24.2) MUTATED"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK 20(11Q24.2) MUTATED" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 20(11Q24.2) MUTATED" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 20(11Q24.2) MUTATED" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"DEL PEAK 20(11Q24.2) WILD-TYPE"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "DEL PEAK 20(11Q24.2) MUTATED"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 20(11Q24.2) MUTATED" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK 20(11Q24.2) MUTATED" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK 20(11Q24.2) WILD-TYPE"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 20(11Q24.2) MUTATED" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 20(11Q24.2) WILD-TYPE" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"DEL PEAK 20(11Q24.2) WILD-TYPE" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 20(11Q24.2) MUTATED"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 20(11Q24.2) MUTATED"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 20(11Q24.2) WILD-TYPE"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 20(11Q24.2) WILD-TYPE"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 20(11Q24.2) MUTATED"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK 20(11Q24.2) MUTATED" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 20(11Q24.2) MUTATED" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 20(11Q24.2) MUTATED" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"DEL PEAK 20(11Q24.2) WILD-TYPE"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "DEL PEAK 20(11Q24.2) MUTATED"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 20(11Q24.2) MUTATED" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK 20(11Q24.2) MUTATED" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK 20(11Q24.2) WILD-TYPE"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 20(11Q24.2) MUTATED" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 20(11Q24.2) WILD-TYPE" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"DEL PEAK 20(11Q24.2) WILD-TYPE" "DEL PEAK 20(11Q24.2) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 20(11Q24.2) MUTATED"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 20(11Q24.2) MUTATED"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 20(11Q24.2) WILD-TYPE"   "DEL PEAK 20(11Q24.2) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 20(11Q24.2) WILD-TYPE"   "DEL PEAK 20(11Q24.2) MUTATED" 
[1] "hr=" "1.5"
D44V2, continuous

Clustering(45) Variable = DEL PEAK 21(12Q23.1) MUTATION ANALYSIS
D45V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 21(12Q23.1) MUTATED    3  9
  DEL PEAK 21(12Q23.1) WILD-TYPE 10 10
  DEL PEAK 21(12Q23.1) MUTATED DEL PEAK 21(12Q23.1) WILD-TYPE 
                            12                             20 
  DEL PEAK 21(12Q23.1) MUTATED DEL PEAK 21(12Q23.1) WILD-TYPE 
                             9                             10 
$`DEL PEAK 21(12Q23.1) MUTATED`
TCGA-N5-A4RM TCGA-N5-A4RS TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI 
        4.87        29.95        50.17        14.70        11.87        26.63 
TCGA-N8-A4PO TCGA-N8-A4PP TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 
       14.40         7.20        74.33        27.39         3.72         6.64 

$`DEL PEAK 21(12Q23.1) WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RO 
       52.27         4.64        47.31        18.08        24.00        22.52 
TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PQ 
       69.63        59.70        13.71        16.34        13.94         4.77 
TCGA-N8-A56S TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
        9.70        85.35        10.42        23.47        15.16         5.49 
TCGA-NG-A4VW TCGA-QM-A5NM 
       31.17         5.42 

  DEL PEAK 21(12Q23.1) MUTATED DEL PEAK 21(12Q23.1) WILD-TYPE 
                          3.72                           4.64 
  DEL PEAK 21(12Q23.1) MUTATED DEL PEAK 21(12Q23.1) WILD-TYPE 
                         74.33                          85.35 
  DEL PEAK 21(12Q23.1) MUTATED DEL PEAK 21(12Q23.1) WILD-TYPE 
                         14.55                          17.21 
[1] "3.7 - 74.3 (14.6)" "4.6 - 85.3 (17.2)"
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 21(12Q23.1) MUTATED" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"DEL PEAK 21(12Q23.1) WILD-TYPE"   "DEL PEAK 21(12Q23.1) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"DEL PEAK 21(12Q23.1) WILD-TYPE"   "DEL PEAK 21(12Q23.1) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 21(12Q23.1) WILD-TYPE"   "DEL PEAK 21(12Q23.1) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 21(12Q23.1) MUTATED"   "DEL PEAK 21(12Q23.1) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK 21(12Q23.1) WILD-TYPE"   "DEL PEAK 21(12Q23.1) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 21(12Q23.1) MUTATED" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 21(12Q23.1) WILD-TYPE"   "DEL PEAK 21(12Q23.1) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "DEL PEAK 21(12Q23.1) MUTATED"   "DEL PEAK 21(12Q23.1) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 21(12Q23.1) MUTATED" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 21(12Q23.1) MUTATED" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"DEL PEAK 21(12Q23.1) WILD-TYPE"   "DEL PEAK 21(12Q23.1) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"DEL PEAK 21(12Q23.1) WILD-TYPE"   "DEL PEAK 21(12Q23.1) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 21(12Q23.1) WILD-TYPE"   "DEL PEAK 21(12Q23.1) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 21(12Q23.1) MUTATED"   "DEL PEAK 21(12Q23.1) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK 21(12Q23.1) WILD-TYPE"   "DEL PEAK 21(12Q23.1) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 21(12Q23.1) MUTATED" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 21(12Q23.1) WILD-TYPE"   "DEL PEAK 21(12Q23.1) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "DEL PEAK 21(12Q23.1) MUTATED"   "DEL PEAK 21(12Q23.1) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 21(12Q23.1) MUTATED" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 21(12Q23.1) MUTATED" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"DEL PEAK 21(12Q23.1) WILD-TYPE"   "DEL PEAK 21(12Q23.1) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"DEL PEAK 21(12Q23.1) WILD-TYPE"   "DEL PEAK 21(12Q23.1) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 21(12Q23.1) WILD-TYPE"   "DEL PEAK 21(12Q23.1) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 21(12Q23.1) MUTATED"   "DEL PEAK 21(12Q23.1) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK 21(12Q23.1) WILD-TYPE"   "DEL PEAK 21(12Q23.1) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 21(12Q23.1) MUTATED" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 21(12Q23.1) WILD-TYPE"   "DEL PEAK 21(12Q23.1) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "DEL PEAK 21(12Q23.1) MUTATED"   "DEL PEAK 21(12Q23.1) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 21(12Q23.1) MUTATED" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 21(12Q23.1) WILD-TYPE" "DEL PEAK 21(12Q23.1) WILD-TYPE" 
[1] "hr=" "1.7"
D45V2, continuous

Clustering(46) Variable = DEL PEAK 22(12Q24.31) MUTATION ANALYSIS
D46V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 22(12Q24.31) MUTATED    3 10
  DEL PEAK 22(12Q24.31) WILD-TYPE 10  9
  DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE 
                             13                              19 
  DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE 
                             10                               9 
$`DEL PEAK 22(12Q24.31) MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A59E TCGA-N5-A59F 
        4.64        18.08        29.95        69.63        14.70        11.87 
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PP TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY 
       26.63        13.71         7.20        74.33        27.39         3.72 
TCGA-NA-A4R1 
        6.64 

$`DEL PEAK 22(12Q24.31) WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RU 
       52.27        47.31         4.87        24.00        22.52        50.17 
TCGA-N5-A4RV TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-N8-A56S 
       59.70        16.34        13.94        14.40         4.77         9.70 
TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW 
       85.35        10.42        23.47        15.16         5.49        31.17 
TCGA-QM-A5NM 
        5.42 

  DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE 
                           3.72                            4.77 
  DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE 
                          74.33                           85.35 
  DEL PEAK 22(12Q24.31) MUTATED DEL PEAK 22(12Q24.31) WILD-TYPE 
                          14.70                           16.34 
[1] "3.7 - 74.3 (14.7)" "4.8 - 85.3 (16.3)"
                     TCGA-N5-A4RA                      TCGA-N5-A4RD 
"DEL PEAK 22(12Q24.31) WILD-TYPE"   "DEL PEAK 22(12Q24.31) MUTATED" 
                     TCGA-N5-A4RF                      TCGA-N5-A4RJ 
"DEL PEAK 22(12Q24.31) WILD-TYPE"   "DEL PEAK 22(12Q24.31) MUTATED" 
                     TCGA-N5-A4RM                      TCGA-N5-A4RN 
"DEL PEAK 22(12Q24.31) WILD-TYPE" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-N5-A4RO                      TCGA-N5-A4RS 
"DEL PEAK 22(12Q24.31) WILD-TYPE"   "DEL PEAK 22(12Q24.31) MUTATED" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RU 
  "DEL PEAK 22(12Q24.31) MUTATED" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-N5-A4RV                      TCGA-N5-A59E 
"DEL PEAK 22(12Q24.31) WILD-TYPE"   "DEL PEAK 22(12Q24.31) MUTATED" 
                     TCGA-N5-A59F                      TCGA-N8-A4PI 
  "DEL PEAK 22(12Q24.31) MUTATED"   "DEL PEAK 22(12Q24.31) MUTATED" 
                     TCGA-N8-A4PL                      TCGA-N8-A4PM 
  "DEL PEAK 22(12Q24.31) MUTATED" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-N8-A4PN                      TCGA-N8-A4PO 
"DEL PEAK 22(12Q24.31) WILD-TYPE" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-N8-A4PP                      TCGA-N8-A4PQ 
  "DEL PEAK 22(12Q24.31) MUTATED" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-N8-A56S                      TCGA-NA-A4QW 
"DEL PEAK 22(12Q24.31) WILD-TYPE"   "DEL PEAK 22(12Q24.31) MUTATED" 
                     TCGA-NA-A4QX                      TCGA-NA-A4QY 
  "DEL PEAK 22(12Q24.31) MUTATED"   "DEL PEAK 22(12Q24.31) MUTATED" 
                     TCGA-NA-A4R1                      TCGA-NA-A5I1 
  "DEL PEAK 22(12Q24.31) MUTATED" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 22(12Q24.31) WILD-TYPE" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 22(12Q24.31) WILD-TYPE" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-NG-A4VW                      TCGA-QM-A5NM 
"DEL PEAK 22(12Q24.31) WILD-TYPE" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-N5-A4RA                      TCGA-N5-A4RD 
"DEL PEAK 22(12Q24.31) WILD-TYPE"   "DEL PEAK 22(12Q24.31) MUTATED" 
                     TCGA-N5-A4RF                      TCGA-N5-A4RJ 
"DEL PEAK 22(12Q24.31) WILD-TYPE"   "DEL PEAK 22(12Q24.31) MUTATED" 
                     TCGA-N5-A4RM                      TCGA-N5-A4RN 
"DEL PEAK 22(12Q24.31) WILD-TYPE" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-N5-A4RO                      TCGA-N5-A4RS 
"DEL PEAK 22(12Q24.31) WILD-TYPE"   "DEL PEAK 22(12Q24.31) MUTATED" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RU 
  "DEL PEAK 22(12Q24.31) MUTATED" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-N5-A4RV                      TCGA-N5-A59E 
"DEL PEAK 22(12Q24.31) WILD-TYPE"   "DEL PEAK 22(12Q24.31) MUTATED" 
                     TCGA-N5-A59F                      TCGA-N8-A4PI 
  "DEL PEAK 22(12Q24.31) MUTATED"   "DEL PEAK 22(12Q24.31) MUTATED" 
                     TCGA-N8-A4PL                      TCGA-N8-A4PM 
  "DEL PEAK 22(12Q24.31) MUTATED" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-N8-A4PN                      TCGA-N8-A4PO 
"DEL PEAK 22(12Q24.31) WILD-TYPE" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-N8-A4PP                      TCGA-N8-A4PQ 
  "DEL PEAK 22(12Q24.31) MUTATED" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-N8-A56S                      TCGA-NA-A4QW 
"DEL PEAK 22(12Q24.31) WILD-TYPE"   "DEL PEAK 22(12Q24.31) MUTATED" 
                     TCGA-NA-A4QX                      TCGA-NA-A4QY 
  "DEL PEAK 22(12Q24.31) MUTATED"   "DEL PEAK 22(12Q24.31) MUTATED" 
                     TCGA-NA-A4R1                      TCGA-NA-A5I1 
  "DEL PEAK 22(12Q24.31) MUTATED" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 22(12Q24.31) WILD-TYPE" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 22(12Q24.31) WILD-TYPE" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-NG-A4VW                      TCGA-QM-A5NM 
"DEL PEAK 22(12Q24.31) WILD-TYPE" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-N5-A4RA                      TCGA-N5-A4RD 
"DEL PEAK 22(12Q24.31) WILD-TYPE"   "DEL PEAK 22(12Q24.31) MUTATED" 
                     TCGA-N5-A4RF                      TCGA-N5-A4RJ 
"DEL PEAK 22(12Q24.31) WILD-TYPE"   "DEL PEAK 22(12Q24.31) MUTATED" 
                     TCGA-N5-A4RM                      TCGA-N5-A4RN 
"DEL PEAK 22(12Q24.31) WILD-TYPE" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-N5-A4RO                      TCGA-N5-A4RS 
"DEL PEAK 22(12Q24.31) WILD-TYPE"   "DEL PEAK 22(12Q24.31) MUTATED" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RU 
  "DEL PEAK 22(12Q24.31) MUTATED" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-N5-A4RV                      TCGA-N5-A59E 
"DEL PEAK 22(12Q24.31) WILD-TYPE"   "DEL PEAK 22(12Q24.31) MUTATED" 
                     TCGA-N5-A59F                      TCGA-N8-A4PI 
  "DEL PEAK 22(12Q24.31) MUTATED"   "DEL PEAK 22(12Q24.31) MUTATED" 
                     TCGA-N8-A4PL                      TCGA-N8-A4PM 
  "DEL PEAK 22(12Q24.31) MUTATED" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-N8-A4PN                      TCGA-N8-A4PO 
"DEL PEAK 22(12Q24.31) WILD-TYPE" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-N8-A4PP                      TCGA-N8-A4PQ 
  "DEL PEAK 22(12Q24.31) MUTATED" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-N8-A56S                      TCGA-NA-A4QW 
"DEL PEAK 22(12Q24.31) WILD-TYPE"   "DEL PEAK 22(12Q24.31) MUTATED" 
                     TCGA-NA-A4QX                      TCGA-NA-A4QY 
  "DEL PEAK 22(12Q24.31) MUTATED"   "DEL PEAK 22(12Q24.31) MUTATED" 
                     TCGA-NA-A4R1                      TCGA-NA-A5I1 
  "DEL PEAK 22(12Q24.31) MUTATED" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 22(12Q24.31) WILD-TYPE" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 22(12Q24.31) WILD-TYPE" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
                     TCGA-NG-A4VW                      TCGA-QM-A5NM 
"DEL PEAK 22(12Q24.31) WILD-TYPE" "DEL PEAK 22(12Q24.31) WILD-TYPE" 
[1] "hr=" "1.8"
D46V2, continuous

Clustering(47) Variable = DEL PEAK 23(13Q12.11) MUTATION ANALYSIS
D47V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 23(13Q12.11) MUTATED    8 10
  DEL PEAK 23(13Q12.11) WILD-TYPE  5  9
  DEL PEAK 23(13Q12.11) MUTATED DEL PEAK 23(13Q12.11) WILD-TYPE 
                             18                              14 
  DEL PEAK 23(13Q12.11) MUTATED DEL PEAK 23(13Q12.11) WILD-TYPE 
                             10                               9 
$`DEL PEAK 23(13Q12.11) MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RT 
        4.64        47.31         4.87        24.00        22.52        69.63 
TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PO TCGA-N8-A4PP 
       50.17        59.70        11.87        26.63        14.40         7.20 
TCGA-N8-A56S TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A5I1 TCGA-ND-A4WF TCGA-QM-A5NM 
        9.70        27.39         3.72        85.35         5.49         5.42 

$`DEL PEAK 23(13Q12.11) WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RJ TCGA-N5-A4RS TCGA-N5-A59E TCGA-N8-A4PL TCGA-N8-A4PM 
       52.27        18.08        29.95        14.70        13.71        16.34 
TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-NA-A4QW TCGA-NA-A4R1 TCGA-ND-A4W6 TCGA-ND-A4WA 
       13.94         4.77        74.33         6.64        10.42        23.47 
TCGA-ND-A4WC TCGA-NG-A4VW 
       15.16        31.17 

  DEL PEAK 23(13Q12.11) MUTATED DEL PEAK 23(13Q12.11) WILD-TYPE 
                           3.72                            4.77 
  DEL PEAK 23(13Q12.11) MUTATED DEL PEAK 23(13Q12.11) WILD-TYPE 
                          85.35                           74.33 
  DEL PEAK 23(13Q12.11) MUTATED DEL PEAK 23(13Q12.11) WILD-TYPE 
                          18.46                           15.75 
[1] "3.7 - 85.3 (18.5)" "4.8 - 74.3 (15.8)"
                     TCGA-N5-A4RA                      TCGA-N5-A4RD 
"DEL PEAK 23(13Q12.11) WILD-TYPE"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-N5-A4RF                      TCGA-N5-A4RJ 
  "DEL PEAK 23(13Q12.11) MUTATED" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-N5-A4RM                      TCGA-N5-A4RN 
  "DEL PEAK 23(13Q12.11) MUTATED"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-N5-A4RO                      TCGA-N5-A4RS 
  "DEL PEAK 23(13Q12.11) MUTATED" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RU 
  "DEL PEAK 23(13Q12.11) MUTATED"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-N5-A4RV                      TCGA-N5-A59E 
  "DEL PEAK 23(13Q12.11) MUTATED" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-N5-A59F                      TCGA-N8-A4PI 
  "DEL PEAK 23(13Q12.11) MUTATED"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-N8-A4PL                      TCGA-N8-A4PM 
"DEL PEAK 23(13Q12.11) WILD-TYPE" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-N8-A4PN                      TCGA-N8-A4PO 
"DEL PEAK 23(13Q12.11) WILD-TYPE"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-N8-A4PP                      TCGA-N8-A4PQ 
  "DEL PEAK 23(13Q12.11) MUTATED" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-N8-A56S                      TCGA-NA-A4QW 
  "DEL PEAK 23(13Q12.11) MUTATED" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-NA-A4QX                      TCGA-NA-A4QY 
  "DEL PEAK 23(13Q12.11) MUTATED"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-NA-A4R1                      TCGA-NA-A5I1 
"DEL PEAK 23(13Q12.11) WILD-TYPE"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 23(13Q12.11) WILD-TYPE" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 23(13Q12.11) WILD-TYPE"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-NG-A4VW                      TCGA-QM-A5NM 
"DEL PEAK 23(13Q12.11) WILD-TYPE"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-N5-A4RA                      TCGA-N5-A4RD 
"DEL PEAK 23(13Q12.11) WILD-TYPE"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-N5-A4RF                      TCGA-N5-A4RJ 
  "DEL PEAK 23(13Q12.11) MUTATED" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-N5-A4RM                      TCGA-N5-A4RN 
  "DEL PEAK 23(13Q12.11) MUTATED"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-N5-A4RO                      TCGA-N5-A4RS 
  "DEL PEAK 23(13Q12.11) MUTATED" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RU 
  "DEL PEAK 23(13Q12.11) MUTATED"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-N5-A4RV                      TCGA-N5-A59E 
  "DEL PEAK 23(13Q12.11) MUTATED" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-N5-A59F                      TCGA-N8-A4PI 
  "DEL PEAK 23(13Q12.11) MUTATED"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-N8-A4PL                      TCGA-N8-A4PM 
"DEL PEAK 23(13Q12.11) WILD-TYPE" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-N8-A4PN                      TCGA-N8-A4PO 
"DEL PEAK 23(13Q12.11) WILD-TYPE"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-N8-A4PP                      TCGA-N8-A4PQ 
  "DEL PEAK 23(13Q12.11) MUTATED" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-N8-A56S                      TCGA-NA-A4QW 
  "DEL PEAK 23(13Q12.11) MUTATED" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-NA-A4QX                      TCGA-NA-A4QY 
  "DEL PEAK 23(13Q12.11) MUTATED"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-NA-A4R1                      TCGA-NA-A5I1 
"DEL PEAK 23(13Q12.11) WILD-TYPE"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 23(13Q12.11) WILD-TYPE" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 23(13Q12.11) WILD-TYPE"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-NG-A4VW                      TCGA-QM-A5NM 
"DEL PEAK 23(13Q12.11) WILD-TYPE"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-N5-A4RA                      TCGA-N5-A4RD 
"DEL PEAK 23(13Q12.11) WILD-TYPE"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-N5-A4RF                      TCGA-N5-A4RJ 
  "DEL PEAK 23(13Q12.11) MUTATED" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-N5-A4RM                      TCGA-N5-A4RN 
  "DEL PEAK 23(13Q12.11) MUTATED"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-N5-A4RO                      TCGA-N5-A4RS 
  "DEL PEAK 23(13Q12.11) MUTATED" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RU 
  "DEL PEAK 23(13Q12.11) MUTATED"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-N5-A4RV                      TCGA-N5-A59E 
  "DEL PEAK 23(13Q12.11) MUTATED" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-N5-A59F                      TCGA-N8-A4PI 
  "DEL PEAK 23(13Q12.11) MUTATED"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-N8-A4PL                      TCGA-N8-A4PM 
"DEL PEAK 23(13Q12.11) WILD-TYPE" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-N8-A4PN                      TCGA-N8-A4PO 
"DEL PEAK 23(13Q12.11) WILD-TYPE"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-N8-A4PP                      TCGA-N8-A4PQ 
  "DEL PEAK 23(13Q12.11) MUTATED" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-N8-A56S                      TCGA-NA-A4QW 
  "DEL PEAK 23(13Q12.11) MUTATED" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-NA-A4QX                      TCGA-NA-A4QY 
  "DEL PEAK 23(13Q12.11) MUTATED"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-NA-A4R1                      TCGA-NA-A5I1 
"DEL PEAK 23(13Q12.11) WILD-TYPE"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 23(13Q12.11) WILD-TYPE" "DEL PEAK 23(13Q12.11) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 23(13Q12.11) WILD-TYPE"   "DEL PEAK 23(13Q12.11) MUTATED" 
                     TCGA-NG-A4VW                      TCGA-QM-A5NM 
"DEL PEAK 23(13Q12.11) WILD-TYPE"   "DEL PEAK 23(13Q12.11) MUTATED" 
[1] "hr=" "1.2"
D47V2, continuous

Clustering(48) Variable = DEL PEAK 24(13Q14.2) MUTATION ANALYSIS
D48V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 24(13Q14.2) MUTATED    7 10
  DEL PEAK 24(13Q14.2) WILD-TYPE  6  9
  DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE 
                            17                             15 
  DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE 
                            10                              9 
$`DEL PEAK 24(13Q14.2) MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RT 
        4.64        47.31         4.87        24.00        22.52        69.63 
TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S 
       50.17        59.70        26.63        14.40         7.20         9.70 
TCGA-NA-A4QX TCGA-NA-A4R1 TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
       27.39         6.64         5.49        31.17         5.42 

$`DEL PEAK 24(13Q14.2) WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RJ TCGA-N5-A4RS TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PL 
       52.27        18.08        29.95        14.70        11.87        13.71 
TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A5I1 
       16.34        13.94         4.77        74.33         3.72        85.35 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC 
       10.42        23.47        15.16 

  DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE 
                          4.64                           3.72 
  DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE 
                         69.63                          85.35 
  DEL PEAK 24(13Q14.2) MUTATED DEL PEAK 24(13Q14.2) WILD-TYPE 
                         22.52                          15.16 
[1] "4.6 - 69.6 (22.5)" "3.7 - 85.3 (15.2)"
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 24(13Q14.2) MUTATED" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 24(13Q14.2) WILD-TYPE" "DEL PEAK 24(13Q14.2) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 24(13Q14.2) WILD-TYPE"   "DEL PEAK 24(13Q14.2) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
  "DEL PEAK 24(13Q14.2) MUTATED"   "DEL PEAK 24(13Q14.2) MUTATED" 
[1] "hr=" "1"  
D48V2, continuous

Clustering(49) Variable = DEL PEAK 25(14Q21.1) MUTATION ANALYSIS
D49V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 25(14Q21.1) MUTATED    5 13
  DEL PEAK 25(14Q21.1) WILD-TYPE  8  6
  DEL PEAK 25(14Q21.1) MUTATED DEL PEAK 25(14Q21.1) WILD-TYPE 
                            18                             14 
  DEL PEAK 25(14Q21.1) MUTATED DEL PEAK 25(14Q21.1) WILD-TYPE 
                            13                              6 
$`DEL PEAK 25(14Q21.1) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RT 
       52.27         4.64        18.08         4.87        22.52        69.63 
TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PO TCGA-N8-A4PP 
       14.70        11.87        26.63        13.71        14.40         7.20 
TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QX TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA 
        4.77         9.70        27.39        85.35        10.42        23.47 

$`DEL PEAK 25(14Q21.1) WILD-TYPE`
TCGA-N5-A4RF TCGA-N5-A4RN TCGA-N5-A4RS TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N8-A4PM 
       47.31        24.00        29.95        50.17        59.70        16.34 
TCGA-N8-A4PN TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-ND-A4WC TCGA-ND-A4WF 
       13.94        74.33         3.72         6.64        15.16         5.49 
TCGA-NG-A4VW TCGA-QM-A5NM 
       31.17         5.42 

  DEL PEAK 25(14Q21.1) MUTATED DEL PEAK 25(14Q21.1) WILD-TYPE 
                          4.64                           3.72 
  DEL PEAK 25(14Q21.1) MUTATED DEL PEAK 25(14Q21.1) WILD-TYPE 
                         85.35                          74.33 
  DEL PEAK 25(14Q21.1) MUTATED DEL PEAK 25(14Q21.1) WILD-TYPE 
                         14.55                          20.17 
[1] "4.6 - 85.3 (14.6)" "3.7 - 74.3 (20.2)"
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 25(14Q21.1) MUTATED"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"DEL PEAK 25(14Q21.1) WILD-TYPE"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 25(14Q21.1) MUTATED" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 25(14Q21.1) MUTATED" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "DEL PEAK 25(14Q21.1) MUTATED" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 25(14Q21.1) WILD-TYPE"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 25(14Q21.1) MUTATED"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK 25(14Q21.1) MUTATED" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK 25(14Q21.1) WILD-TYPE"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 25(14Q21.1) MUTATED"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "DEL PEAK 25(14Q21.1) MUTATED" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "DEL PEAK 25(14Q21.1) MUTATED" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"DEL PEAK 25(14Q21.1) WILD-TYPE"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 25(14Q21.1) MUTATED"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 25(14Q21.1) WILD-TYPE" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 25(14Q21.1) WILD-TYPE" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 25(14Q21.1) MUTATED"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"DEL PEAK 25(14Q21.1) WILD-TYPE"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 25(14Q21.1) MUTATED" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 25(14Q21.1) MUTATED" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "DEL PEAK 25(14Q21.1) MUTATED" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 25(14Q21.1) WILD-TYPE"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 25(14Q21.1) MUTATED"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK 25(14Q21.1) MUTATED" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK 25(14Q21.1) WILD-TYPE"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 25(14Q21.1) MUTATED"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "DEL PEAK 25(14Q21.1) MUTATED" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "DEL PEAK 25(14Q21.1) MUTATED" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"DEL PEAK 25(14Q21.1) WILD-TYPE"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 25(14Q21.1) MUTATED"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 25(14Q21.1) WILD-TYPE" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 25(14Q21.1) WILD-TYPE" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 25(14Q21.1) MUTATED"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"DEL PEAK 25(14Q21.1) WILD-TYPE"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 25(14Q21.1) MUTATED" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 25(14Q21.1) MUTATED" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "DEL PEAK 25(14Q21.1) MUTATED" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 25(14Q21.1) WILD-TYPE"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 25(14Q21.1) MUTATED"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK 25(14Q21.1) MUTATED" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK 25(14Q21.1) WILD-TYPE"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 25(14Q21.1) MUTATED"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "DEL PEAK 25(14Q21.1) MUTATED" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "DEL PEAK 25(14Q21.1) MUTATED" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"DEL PEAK 25(14Q21.1) WILD-TYPE"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 25(14Q21.1) MUTATED"   "DEL PEAK 25(14Q21.1) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 25(14Q21.1) WILD-TYPE" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 25(14Q21.1) WILD-TYPE" "DEL PEAK 25(14Q21.1) WILD-TYPE" 
[1] "hr=" "2.1"
D49V2, continuous

Clustering(50) Variable = DEL PEAK 26(15Q15.1) MUTATION ANALYSIS
D50V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 26(15Q15.1) MUTATED   11 14
  DEL PEAK 26(15Q15.1) WILD-TYPE  2  5
  DEL PEAK 26(15Q15.1) MUTATED DEL PEAK 26(15Q15.1) WILD-TYPE 
                            25                              7 
  DEL PEAK 26(15Q15.1) MUTATED DEL PEAK 26(15Q15.1) WILD-TYPE 
                            14                              5 
$`DEL PEAK 26(15Q15.1) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.27         4.64        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59E TCGA-N8-A4PI TCGA-N8-A4PL 
       22.52        69.63        50.17        14.70        26.63        13.71 
TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-NA-A4QW 
       16.34        13.94        14.40         7.20         4.77        74.33 
TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WA TCGA-ND-A4WF 
       27.39         3.72         6.64        85.35        23.47         5.49 
TCGA-QM-A5NM 
        5.42 

$`DEL PEAK 26(15Q15.1) WILD-TYPE`
TCGA-N5-A4RS TCGA-N5-A4RV TCGA-N5-A59F TCGA-N8-A56S TCGA-ND-A4W6 TCGA-ND-A4WC 
       29.95        59.70        11.87         9.70        10.42        15.16 
TCGA-NG-A4VW 
       31.17 

  DEL PEAK 26(15Q15.1) MUTATED DEL PEAK 26(15Q15.1) WILD-TYPE 
                          3.72                           9.70 
  DEL PEAK 26(15Q15.1) MUTATED DEL PEAK 26(15Q15.1) WILD-TYPE 
                         85.35                          59.70 
  DEL PEAK 26(15Q15.1) MUTATED DEL PEAK 26(15Q15.1) WILD-TYPE 
                         16.34                          15.16 
[1] "3.7 - 85.3 (16.3)" "9.7 - 59.7 (15.2)"
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 26(15Q15.1) MUTATED"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK 26(15Q15.1) MUTATED"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 26(15Q15.1) MUTATED"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 26(15Q15.1) MUTATED" "DEL PEAK 26(15Q15.1) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "DEL PEAK 26(15Q15.1) MUTATED"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 26(15Q15.1) WILD-TYPE"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"DEL PEAK 26(15Q15.1) WILD-TYPE"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK 26(15Q15.1) MUTATED"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "DEL PEAK 26(15Q15.1) MUTATED"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 26(15Q15.1) MUTATED"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 26(15Q15.1) WILD-TYPE"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "DEL PEAK 26(15Q15.1) MUTATED"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 26(15Q15.1) MUTATED"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 26(15Q15.1) WILD-TYPE"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 26(15Q15.1) WILD-TYPE"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 26(15Q15.1) WILD-TYPE"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 26(15Q15.1) MUTATED"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK 26(15Q15.1) MUTATED"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 26(15Q15.1) MUTATED"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 26(15Q15.1) MUTATED" "DEL PEAK 26(15Q15.1) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "DEL PEAK 26(15Q15.1) MUTATED"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 26(15Q15.1) WILD-TYPE"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"DEL PEAK 26(15Q15.1) WILD-TYPE"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK 26(15Q15.1) MUTATED"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "DEL PEAK 26(15Q15.1) MUTATED"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 26(15Q15.1) MUTATED"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 26(15Q15.1) WILD-TYPE"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "DEL PEAK 26(15Q15.1) MUTATED"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 26(15Q15.1) MUTATED"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 26(15Q15.1) WILD-TYPE"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 26(15Q15.1) WILD-TYPE"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 26(15Q15.1) WILD-TYPE"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 26(15Q15.1) MUTATED"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK 26(15Q15.1) MUTATED"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 26(15Q15.1) MUTATED"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 26(15Q15.1) MUTATED" "DEL PEAK 26(15Q15.1) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "DEL PEAK 26(15Q15.1) MUTATED"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 26(15Q15.1) WILD-TYPE"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"DEL PEAK 26(15Q15.1) WILD-TYPE"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK 26(15Q15.1) MUTATED"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "DEL PEAK 26(15Q15.1) MUTATED"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 26(15Q15.1) MUTATED"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 26(15Q15.1) WILD-TYPE"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "DEL PEAK 26(15Q15.1) MUTATED"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 26(15Q15.1) MUTATED"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 26(15Q15.1) WILD-TYPE"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 26(15Q15.1) WILD-TYPE"   "DEL PEAK 26(15Q15.1) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 26(15Q15.1) WILD-TYPE"   "DEL PEAK 26(15Q15.1) MUTATED" 
[1] "hr=" "1.1"
D50V2, continuous

Clustering(51) Variable = DEL PEAK 27(16P13.3) MUTATION ANALYSIS
D51V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 27(16P13.3) MUTATED    8 11
  DEL PEAK 27(16P13.3) WILD-TYPE  5  8
  DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE 
                            19                             13 
  DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE 
                            11                              8 
$`DEL PEAK 27(16P13.3) MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A4RU 
        4.64        47.31         4.87        24.00        22.52        50.17 
TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO 
       14.70        11.87        26.63        13.71        16.34        14.40 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 
        7.20         4.77        74.33         3.72         6.64        85.35 
TCGA-ND-A4WF 
        5.49 

$`DEL PEAK 27(16P13.3) WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RJ TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PN 
       52.27        18.08        29.95        69.63        59.70        13.94 
TCGA-N8-A56S TCGA-NA-A4QX TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-NG-A4VW 
        9.70        27.39        10.42        23.47        15.16        31.17 
TCGA-QM-A5NM 
        5.42 

  DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE 
                          3.72                           5.42 
  DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE 
                         85.35                          69.63 
  DEL PEAK 27(16P13.3) MUTATED DEL PEAK 27(16P13.3) WILD-TYPE 
                         14.40                          23.47 
[1] "3.7 - 85.3 (14.4)" "5.4 - 69.6 (23.5)"
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK 27(16P13.3) MUTATED" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 27(16P13.3) MUTATED"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 27(16P13.3) MUTATED" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 27(16P13.3) MUTATED"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK 27(16P13.3) MUTATED"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 27(16P13.3) MUTATED"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 27(16P13.3) MUTATED"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK 27(16P13.3) MUTATED" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 27(16P13.3) MUTATED"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 27(16P13.3) MUTATED" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 27(16P13.3) MUTATED"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK 27(16P13.3) MUTATED"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 27(16P13.3) MUTATED"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 27(16P13.3) MUTATED"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK 27(16P13.3) MUTATED" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 27(16P13.3) MUTATED"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 27(16P13.3) MUTATED" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 27(16P13.3) MUTATED"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK 27(16P13.3) MUTATED"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 27(16P13.3) MUTATED"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 27(16P13.3) MUTATED"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 27(16P13.3) WILD-TYPE"   "DEL PEAK 27(16P13.3) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 27(16P13.3) WILD-TYPE" "DEL PEAK 27(16P13.3) WILD-TYPE" 
[1] "hr=" "1.4"
D51V2, continuous

Clustering(52) Variable = DEL PEAK 28(16Q23.1) MUTATION ANALYSIS
D52V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 28(16Q23.1) MUTATED    8 15
  DEL PEAK 28(16Q23.1) WILD-TYPE  5  4
  DEL PEAK 28(16Q23.1) MUTATED DEL PEAK 28(16Q23.1) WILD-TYPE 
                            23                              9 
  DEL PEAK 28(16Q23.1) MUTATED DEL PEAK 28(16Q23.1) WILD-TYPE 
                            15                              4 
$`DEL PEAK 28(16Q23.1) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RO 
       52.27         4.64        47.31        18.08         4.87        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI 
       29.95        69.63        50.17        14.70        11.87        26.63 
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ 
       13.71        16.34        13.94        14.40         7.20         4.77 
TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-ND-A4W6 TCGA-ND-A4WF 
       74.33         3.72         6.64        10.42         5.49 

$`DEL PEAK 28(16Q23.1) WILD-TYPE`
TCGA-N5-A4RN TCGA-N5-A4RV TCGA-N8-A56S TCGA-NA-A4QX TCGA-NA-A5I1 TCGA-ND-A4WA 
       24.00        59.70         9.70        27.39        85.35        23.47 
TCGA-ND-A4WC TCGA-NG-A4VW TCGA-QM-A5NM 
       15.16        31.17         5.42 

  DEL PEAK 28(16Q23.1) MUTATED DEL PEAK 28(16Q23.1) WILD-TYPE 
                          3.72                           5.42 
  DEL PEAK 28(16Q23.1) MUTATED DEL PEAK 28(16Q23.1) WILD-TYPE 
                         74.33                          85.35 
  DEL PEAK 28(16Q23.1) MUTATED DEL PEAK 28(16Q23.1) WILD-TYPE 
                          14.4                           24.0 
[1] "3.7 - 74.3 (14.4)" "5.4 - 85.3 (24.0)"
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 28(16Q23.1) MUTATED"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 28(16Q23.1) MUTATED" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 28(16Q23.1) WILD-TYPE"   "DEL PEAK 28(16Q23.1) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 28(16Q23.1) WILD-TYPE" "DEL PEAK 28(16Q23.1) WILD-TYPE" 
[1] "hr=" "2"  
D52V2, continuous

Clustering(53) Variable = DEL PEAK 29(17P13.1) MUTATION ANALYSIS
D53V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 29(17P13.1) MUTATED   11 15
  DEL PEAK 29(17P13.1) WILD-TYPE  2  4
  DEL PEAK 29(17P13.1) MUTATED DEL PEAK 29(17P13.1) WILD-TYPE 
                            26                              6 
  DEL PEAK 29(17P13.1) MUTATED DEL PEAK 29(17P13.1) WILD-TYPE 
                            15                              4 
$`DEL PEAK 29(17P13.1) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.27         4.64        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F 
       22.52        69.63        50.17        59.70        14.70        11.87 
TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QW 
       16.34        13.94        14.40         7.20         9.70        74.33 
TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA 
       27.39         3.72         6.64        85.35        10.42        23.47 
TCGA-ND-A4WF TCGA-QM-A5NM 
        5.49         5.42 

$`DEL PEAK 29(17P13.1) WILD-TYPE`
TCGA-N5-A4RS TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PQ TCGA-ND-A4WC TCGA-NG-A4VW 
       29.95        26.63        13.71         4.77        15.16        31.17 

  DEL PEAK 29(17P13.1) MUTATED DEL PEAK 29(17P13.1) WILD-TYPE 
                          3.72                           4.77 
  DEL PEAK 29(17P13.1) MUTATED DEL PEAK 29(17P13.1) WILD-TYPE 
                         85.35                          31.17 
  DEL PEAK 29(17P13.1) MUTATED DEL PEAK 29(17P13.1) WILD-TYPE 
                        15.520                         20.895 
[1] "3.7 - 85.3 (15.5)" "4.8 - 31.2 (20.9)"
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 29(17P13.1) MUTATED" "DEL PEAK 29(17P13.1) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 29(17P13.1) MUTATED" "DEL PEAK 29(17P13.1) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"DEL PEAK 29(17P13.1) WILD-TYPE"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 29(17P13.1) MUTATED" "DEL PEAK 29(17P13.1) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 29(17P13.1) WILD-TYPE"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 29(17P13.1) WILD-TYPE"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 29(17P13.1) MUTATED" "DEL PEAK 29(17P13.1) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 29(17P13.1) MUTATED" "DEL PEAK 29(17P13.1) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"DEL PEAK 29(17P13.1) WILD-TYPE"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 29(17P13.1) MUTATED" "DEL PEAK 29(17P13.1) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 29(17P13.1) WILD-TYPE"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 29(17P13.1) WILD-TYPE"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 29(17P13.1) MUTATED" "DEL PEAK 29(17P13.1) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 29(17P13.1) MUTATED" "DEL PEAK 29(17P13.1) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"DEL PEAK 29(17P13.1) WILD-TYPE"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 29(17P13.1) MUTATED" "DEL PEAK 29(17P13.1) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 29(17P13.1) MUTATED"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 29(17P13.1) WILD-TYPE"   "DEL PEAK 29(17P13.1) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 29(17P13.1) WILD-TYPE"   "DEL PEAK 29(17P13.1) MUTATED" 
[1] "hr=" "1.2"
D53V2, continuous

Clustering(54) Variable = DEL PEAK 30(17Q21.32) MUTATION ANALYSIS
D54V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 30(17Q21.32) MUTATED    3  8
  DEL PEAK 30(17Q21.32) WILD-TYPE 10 11
  DEL PEAK 30(17Q21.32) MUTATED DEL PEAK 30(17Q21.32) WILD-TYPE 
                             11                              21 
  DEL PEAK 30(17Q21.32) MUTATED DEL PEAK 30(17Q21.32) WILD-TYPE 
                              8                              11 
$`DEL PEAK 30(17Q21.32) MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RO TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PM TCGA-N8-A4PQ 
        4.64        22.52        14.70        11.87        16.34         4.77 
TCGA-NA-A4QX TCGA-NA-A4R1 TCGA-ND-A4W6 TCGA-ND-A4WF TCGA-QM-A5NM 
       27.39         6.64        10.42         5.49         5.42 

$`DEL PEAK 30(17Q21.32) WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RS 
       52.27        47.31        18.08         4.87        24.00        29.95 
TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PN 
       69.63        50.17        59.70        26.63        13.71        13.94 
TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A5I1 
       14.40         7.20         9.70        74.33         3.72        85.35 
TCGA-ND-A4WA TCGA-ND-A4WC TCGA-NG-A4VW 
       23.47        15.16        31.17 

  DEL PEAK 30(17Q21.32) MUTATED DEL PEAK 30(17Q21.32) WILD-TYPE 
                           4.64                            3.72 
  DEL PEAK 30(17Q21.32) MUTATED DEL PEAK 30(17Q21.32) WILD-TYPE 
                          27.39                           85.35 
  DEL PEAK 30(17Q21.32) MUTATED DEL PEAK 30(17Q21.32) WILD-TYPE 
                          10.42                           24.00 
[1] "4.6 - 27.4 (10.4)" "3.7 - 85.3 (24.0)"
                     TCGA-N5-A4RA                      TCGA-N5-A4RD 
"DEL PEAK 30(17Q21.32) WILD-TYPE"   "DEL PEAK 30(17Q21.32) MUTATED" 
                     TCGA-N5-A4RF                      TCGA-N5-A4RJ 
"DEL PEAK 30(17Q21.32) WILD-TYPE" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-N5-A4RM                      TCGA-N5-A4RN 
"DEL PEAK 30(17Q21.32) WILD-TYPE" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-N5-A4RO                      TCGA-N5-A4RS 
  "DEL PEAK 30(17Q21.32) MUTATED" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RU 
"DEL PEAK 30(17Q21.32) WILD-TYPE" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-N5-A4RV                      TCGA-N5-A59E 
"DEL PEAK 30(17Q21.32) WILD-TYPE"   "DEL PEAK 30(17Q21.32) MUTATED" 
                     TCGA-N5-A59F                      TCGA-N8-A4PI 
  "DEL PEAK 30(17Q21.32) MUTATED" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-N8-A4PL                      TCGA-N8-A4PM 
"DEL PEAK 30(17Q21.32) WILD-TYPE"   "DEL PEAK 30(17Q21.32) MUTATED" 
                     TCGA-N8-A4PN                      TCGA-N8-A4PO 
"DEL PEAK 30(17Q21.32) WILD-TYPE" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-N8-A4PP                      TCGA-N8-A4PQ 
"DEL PEAK 30(17Q21.32) WILD-TYPE"   "DEL PEAK 30(17Q21.32) MUTATED" 
                     TCGA-N8-A56S                      TCGA-NA-A4QW 
"DEL PEAK 30(17Q21.32) WILD-TYPE" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-NA-A4QX                      TCGA-NA-A4QY 
  "DEL PEAK 30(17Q21.32) MUTATED" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-NA-A4R1                      TCGA-NA-A5I1 
  "DEL PEAK 30(17Q21.32) MUTATED" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
  "DEL PEAK 30(17Q21.32) MUTATED" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 30(17Q21.32) WILD-TYPE"   "DEL PEAK 30(17Q21.32) MUTATED" 
                     TCGA-NG-A4VW                      TCGA-QM-A5NM 
"DEL PEAK 30(17Q21.32) WILD-TYPE"   "DEL PEAK 30(17Q21.32) MUTATED" 
                     TCGA-N5-A4RA                      TCGA-N5-A4RD 
"DEL PEAK 30(17Q21.32) WILD-TYPE"   "DEL PEAK 30(17Q21.32) MUTATED" 
                     TCGA-N5-A4RF                      TCGA-N5-A4RJ 
"DEL PEAK 30(17Q21.32) WILD-TYPE" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-N5-A4RM                      TCGA-N5-A4RN 
"DEL PEAK 30(17Q21.32) WILD-TYPE" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-N5-A4RO                      TCGA-N5-A4RS 
  "DEL PEAK 30(17Q21.32) MUTATED" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RU 
"DEL PEAK 30(17Q21.32) WILD-TYPE" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-N5-A4RV                      TCGA-N5-A59E 
"DEL PEAK 30(17Q21.32) WILD-TYPE"   "DEL PEAK 30(17Q21.32) MUTATED" 
                     TCGA-N5-A59F                      TCGA-N8-A4PI 
  "DEL PEAK 30(17Q21.32) MUTATED" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-N8-A4PL                      TCGA-N8-A4PM 
"DEL PEAK 30(17Q21.32) WILD-TYPE"   "DEL PEAK 30(17Q21.32) MUTATED" 
                     TCGA-N8-A4PN                      TCGA-N8-A4PO 
"DEL PEAK 30(17Q21.32) WILD-TYPE" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-N8-A4PP                      TCGA-N8-A4PQ 
"DEL PEAK 30(17Q21.32) WILD-TYPE"   "DEL PEAK 30(17Q21.32) MUTATED" 
                     TCGA-N8-A56S                      TCGA-NA-A4QW 
"DEL PEAK 30(17Q21.32) WILD-TYPE" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-NA-A4QX                      TCGA-NA-A4QY 
  "DEL PEAK 30(17Q21.32) MUTATED" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-NA-A4R1                      TCGA-NA-A5I1 
  "DEL PEAK 30(17Q21.32) MUTATED" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
  "DEL PEAK 30(17Q21.32) MUTATED" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 30(17Q21.32) WILD-TYPE"   "DEL PEAK 30(17Q21.32) MUTATED" 
                     TCGA-NG-A4VW                      TCGA-QM-A5NM 
"DEL PEAK 30(17Q21.32) WILD-TYPE"   "DEL PEAK 30(17Q21.32) MUTATED" 
                     TCGA-N5-A4RA                      TCGA-N5-A4RD 
"DEL PEAK 30(17Q21.32) WILD-TYPE"   "DEL PEAK 30(17Q21.32) MUTATED" 
                     TCGA-N5-A4RF                      TCGA-N5-A4RJ 
"DEL PEAK 30(17Q21.32) WILD-TYPE" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-N5-A4RM                      TCGA-N5-A4RN 
"DEL PEAK 30(17Q21.32) WILD-TYPE" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-N5-A4RO                      TCGA-N5-A4RS 
  "DEL PEAK 30(17Q21.32) MUTATED" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RU 
"DEL PEAK 30(17Q21.32) WILD-TYPE" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-N5-A4RV                      TCGA-N5-A59E 
"DEL PEAK 30(17Q21.32) WILD-TYPE"   "DEL PEAK 30(17Q21.32) MUTATED" 
                     TCGA-N5-A59F                      TCGA-N8-A4PI 
  "DEL PEAK 30(17Q21.32) MUTATED" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-N8-A4PL                      TCGA-N8-A4PM 
"DEL PEAK 30(17Q21.32) WILD-TYPE"   "DEL PEAK 30(17Q21.32) MUTATED" 
                     TCGA-N8-A4PN                      TCGA-N8-A4PO 
"DEL PEAK 30(17Q21.32) WILD-TYPE" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-N8-A4PP                      TCGA-N8-A4PQ 
"DEL PEAK 30(17Q21.32) WILD-TYPE"   "DEL PEAK 30(17Q21.32) MUTATED" 
                     TCGA-N8-A56S                      TCGA-NA-A4QW 
"DEL PEAK 30(17Q21.32) WILD-TYPE" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-NA-A4QX                      TCGA-NA-A4QY 
  "DEL PEAK 30(17Q21.32) MUTATED" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-NA-A4R1                      TCGA-NA-A5I1 
  "DEL PEAK 30(17Q21.32) MUTATED" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
  "DEL PEAK 30(17Q21.32) MUTATED" "DEL PEAK 30(17Q21.32) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 30(17Q21.32) WILD-TYPE"   "DEL PEAK 30(17Q21.32) MUTATED" 
                     TCGA-NG-A4VW                      TCGA-QM-A5NM 
"DEL PEAK 30(17Q21.32) WILD-TYPE"   "DEL PEAK 30(17Q21.32) MUTATED" 
[1] "hr=" "4.5"
D54V2, continuous

Clustering(55) Variable = DEL PEAK 31(18Q22.2) MUTATION ANALYSIS
D55V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 31(18Q22.2) MUTATED    5 10
  DEL PEAK 31(18Q22.2) WILD-TYPE  8  9
  DEL PEAK 31(18Q22.2) MUTATED DEL PEAK 31(18Q22.2) WILD-TYPE 
                            15                             17 
  DEL PEAK 31(18Q22.2) MUTATED DEL PEAK 31(18Q22.2) WILD-TYPE 
                            10                              9 
$`DEL PEAK 31(18Q22.2) MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO TCGA-N5-A59E 
        4.64        18.08         4.87        24.00        22.52        14.70 
TCGA-N5-A59F TCGA-N8-A4PL TCGA-N8-A4PN TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A5I1 
       11.87        13.71        13.94        74.33        27.39        85.35 
TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC 
       10.42        23.47        15.16 

$`DEL PEAK 31(18Q22.2) WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV 
       52.27        47.31        29.95        69.63        50.17        59.70 
TCGA-N8-A4PI TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S 
       26.63        16.34        14.40         7.20         4.77         9.70 
TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-ND-A4WF TCGA-NG-A4VW TCGA-QM-A5NM 
        3.72         6.64         5.49        31.17         5.42 

  DEL PEAK 31(18Q22.2) MUTATED DEL PEAK 31(18Q22.2) WILD-TYPE 
                          4.64                           3.72 
  DEL PEAK 31(18Q22.2) MUTATED DEL PEAK 31(18Q22.2) WILD-TYPE 
                         85.35                          69.63 
  DEL PEAK 31(18Q22.2) MUTATED DEL PEAK 31(18Q22.2) WILD-TYPE 
                         15.16                          16.34 
[1] "4.6 - 85.3 (15.2)" "3.7 - 69.6 (16.3)"
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"DEL PEAK 31(18Q22.2) WILD-TYPE"   "DEL PEAK 31(18Q22.2) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"DEL PEAK 31(18Q22.2) WILD-TYPE"   "DEL PEAK 31(18Q22.2) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 31(18Q22.2) MUTATED"   "DEL PEAK 31(18Q22.2) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 31(18Q22.2) MUTATED" "DEL PEAK 31(18Q22.2) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"DEL PEAK 31(18Q22.2) WILD-TYPE" "DEL PEAK 31(18Q22.2) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 31(18Q22.2) WILD-TYPE"   "DEL PEAK 31(18Q22.2) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 31(18Q22.2) MUTATED" "DEL PEAK 31(18Q22.2) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK 31(18Q22.2) MUTATED" "DEL PEAK 31(18Q22.2) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "DEL PEAK 31(18Q22.2) MUTATED" "DEL PEAK 31(18Q22.2) WILD-TYPE" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"DEL PEAK 31(18Q22.2) WILD-TYPE" "DEL PEAK 31(18Q22.2) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 31(18Q22.2) WILD-TYPE"   "DEL PEAK 31(18Q22.2) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "DEL PEAK 31(18Q22.2) MUTATED" "DEL PEAK 31(18Q22.2) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"DEL PEAK 31(18Q22.2) WILD-TYPE"   "DEL PEAK 31(18Q22.2) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 31(18Q22.2) MUTATED"   "DEL PEAK 31(18Q22.2) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
  "DEL PEAK 31(18Q22.2) MUTATED" "DEL PEAK 31(18Q22.2) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 31(18Q22.2) WILD-TYPE" "DEL PEAK 31(18Q22.2) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"DEL PEAK 31(18Q22.2) WILD-TYPE"   "DEL PEAK 31(18Q22.2) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"DEL PEAK 31(18Q22.2) WILD-TYPE"   "DEL PEAK 31(18Q22.2) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 31(18Q22.2) MUTATED"   "DEL PEAK 31(18Q22.2) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 31(18Q22.2) MUTATED" "DEL PEAK 31(18Q22.2) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"DEL PEAK 31(18Q22.2) WILD-TYPE" "DEL PEAK 31(18Q22.2) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 31(18Q22.2) WILD-TYPE"   "DEL PEAK 31(18Q22.2) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 31(18Q22.2) MUTATED" "DEL PEAK 31(18Q22.2) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK 31(18Q22.2) MUTATED" "DEL PEAK 31(18Q22.2) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "DEL PEAK 31(18Q22.2) MUTATED" "DEL PEAK 31(18Q22.2) WILD-TYPE" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"DEL PEAK 31(18Q22.2) WILD-TYPE" "DEL PEAK 31(18Q22.2) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 31(18Q22.2) WILD-TYPE"   "DEL PEAK 31(18Q22.2) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "DEL PEAK 31(18Q22.2) MUTATED" "DEL PEAK 31(18Q22.2) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"DEL PEAK 31(18Q22.2) WILD-TYPE"   "DEL PEAK 31(18Q22.2) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 31(18Q22.2) MUTATED"   "DEL PEAK 31(18Q22.2) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
  "DEL PEAK 31(18Q22.2) MUTATED" "DEL PEAK 31(18Q22.2) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 31(18Q22.2) WILD-TYPE" "DEL PEAK 31(18Q22.2) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"DEL PEAK 31(18Q22.2) WILD-TYPE"   "DEL PEAK 31(18Q22.2) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"DEL PEAK 31(18Q22.2) WILD-TYPE"   "DEL PEAK 31(18Q22.2) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 31(18Q22.2) MUTATED"   "DEL PEAK 31(18Q22.2) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 31(18Q22.2) MUTATED" "DEL PEAK 31(18Q22.2) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"DEL PEAK 31(18Q22.2) WILD-TYPE" "DEL PEAK 31(18Q22.2) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 31(18Q22.2) WILD-TYPE"   "DEL PEAK 31(18Q22.2) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 31(18Q22.2) MUTATED" "DEL PEAK 31(18Q22.2) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK 31(18Q22.2) MUTATED" "DEL PEAK 31(18Q22.2) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "DEL PEAK 31(18Q22.2) MUTATED" "DEL PEAK 31(18Q22.2) WILD-TYPE" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
"DEL PEAK 31(18Q22.2) WILD-TYPE" "DEL PEAK 31(18Q22.2) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
"DEL PEAK 31(18Q22.2) WILD-TYPE"   "DEL PEAK 31(18Q22.2) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "DEL PEAK 31(18Q22.2) MUTATED" "DEL PEAK 31(18Q22.2) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"DEL PEAK 31(18Q22.2) WILD-TYPE"   "DEL PEAK 31(18Q22.2) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 31(18Q22.2) MUTATED"   "DEL PEAK 31(18Q22.2) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
  "DEL PEAK 31(18Q22.2) MUTATED" "DEL PEAK 31(18Q22.2) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 31(18Q22.2) WILD-TYPE" "DEL PEAK 31(18Q22.2) WILD-TYPE" 
[1] "hr=" "1.5"
D55V2, continuous

Clustering(56) Variable = DEL PEAK 32(19P13.3) MUTATION ANALYSIS
D56V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 32(19P13.3) MUTATED   11 18
  DEL PEAK 32(19P13.3) WILD-TYPE  2  1
  DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE 
                            29                              3 
  DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE 
                            18                              1 
$`DEL PEAK 32(19P13.3) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN 
       52.27         4.64        47.31        18.08         4.87        24.00 
TCGA-N5-A4RO TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E 
       22.52        29.95        69.63        50.17        59.70        14.70 
TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO 
       11.87        26.63        13.71        16.34        13.94        14.40 
TCGA-N8-A4PP TCGA-N8-A4PQ TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-NA-A4QY 
        7.20         4.77         9.70        74.33        27.39         3.72 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WF 
        6.64        85.35        10.42        23.47         5.49 

$`DEL PEAK 32(19P13.3) WILD-TYPE`
TCGA-ND-A4WC TCGA-NG-A4VW TCGA-QM-A5NM 
       15.16        31.17         5.42 

  DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE 
                          3.72                           5.42 
  DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE 
                         85.35                          31.17 
  DEL PEAK 32(19P13.3) MUTATED DEL PEAK 32(19P13.3) WILD-TYPE 
                         16.34                          15.16 
[1] "3.7 - 85.3 (16.3)" "5.4 - 31.2 (15.2)"
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
  "DEL PEAK 32(19P13.3) MUTATED"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 32(19P13.3) WILD-TYPE"   "DEL PEAK 32(19P13.3) MUTATED" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 32(19P13.3) WILD-TYPE" "DEL PEAK 32(19P13.3) WILD-TYPE" 
[1] "hr=" "1.6"
D56V2, continuous

Clustering(57) Variable = DEL PEAK 33(19Q13.33) MUTATION ANALYSIS
D57V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 33(19Q13.33) MUTATED    5  6
  DEL PEAK 33(19Q13.33) WILD-TYPE  8 13
  DEL PEAK 33(19Q13.33) MUTATED DEL PEAK 33(19Q13.33) WILD-TYPE 
                             11                              21 
  DEL PEAK 33(19Q13.33) MUTATED DEL PEAK 33(19Q13.33) WILD-TYPE 
                              6                              13 
$`DEL PEAK 33(19Q13.33) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RT TCGA-N5-A4RV TCGA-N8-A4PN 
       52.27         4.87        22.52        69.63        59.70        13.94 
TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4QX TCGA-ND-A4WF 
        7.20         9.70        74.33        27.39         5.49 

$`DEL PEAK 33(19Q13.33) WILD-TYPE`
TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RS TCGA-N5-A4RU 
        4.64        47.31        18.08        24.00        29.95        50.17 
TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO 
       14.70        11.87        26.63        13.71        16.34        14.40 
TCGA-N8-A4PQ TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA 
        4.77         3.72         6.64        85.35        10.42        23.47 
TCGA-ND-A4WC TCGA-NG-A4VW TCGA-QM-A5NM 
       15.16        31.17         5.42 

  DEL PEAK 33(19Q13.33) MUTATED DEL PEAK 33(19Q13.33) WILD-TYPE 
                           4.87                            3.72 
  DEL PEAK 33(19Q13.33) MUTATED DEL PEAK 33(19Q13.33) WILD-TYPE 
                          74.33                           85.35 
  DEL PEAK 33(19Q13.33) MUTATED DEL PEAK 33(19Q13.33) WILD-TYPE 
                          22.52                           15.16 
[1] "4.9 - 74.3 (22.5)" "3.7 - 85.3 (15.2)"
                     TCGA-N5-A4RA                      TCGA-N5-A4RD 
  "DEL PEAK 33(19Q13.33) MUTATED" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N5-A4RF                      TCGA-N5-A4RJ 
"DEL PEAK 33(19Q13.33) WILD-TYPE" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N5-A4RM                      TCGA-N5-A4RN 
  "DEL PEAK 33(19Q13.33) MUTATED" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N5-A4RO                      TCGA-N5-A4RS 
  "DEL PEAK 33(19Q13.33) MUTATED" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RU 
  "DEL PEAK 33(19Q13.33) MUTATED" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N5-A4RV                      TCGA-N5-A59E 
  "DEL PEAK 33(19Q13.33) MUTATED" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N5-A59F                      TCGA-N8-A4PI 
"DEL PEAK 33(19Q13.33) WILD-TYPE" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N8-A4PL                      TCGA-N8-A4PM 
"DEL PEAK 33(19Q13.33) WILD-TYPE" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N8-A4PN                      TCGA-N8-A4PO 
  "DEL PEAK 33(19Q13.33) MUTATED" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N8-A4PP                      TCGA-N8-A4PQ 
  "DEL PEAK 33(19Q13.33) MUTATED" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N8-A56S                      TCGA-NA-A4QW 
  "DEL PEAK 33(19Q13.33) MUTATED"   "DEL PEAK 33(19Q13.33) MUTATED" 
                     TCGA-NA-A4QX                      TCGA-NA-A4QY 
  "DEL PEAK 33(19Q13.33) MUTATED" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-NA-A4R1                      TCGA-NA-A5I1 
"DEL PEAK 33(19Q13.33) WILD-TYPE" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 33(19Q13.33) WILD-TYPE" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 33(19Q13.33) WILD-TYPE"   "DEL PEAK 33(19Q13.33) MUTATED" 
                     TCGA-NG-A4VW                      TCGA-QM-A5NM 
"DEL PEAK 33(19Q13.33) WILD-TYPE" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N5-A4RA                      TCGA-N5-A4RD 
  "DEL PEAK 33(19Q13.33) MUTATED" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N5-A4RF                      TCGA-N5-A4RJ 
"DEL PEAK 33(19Q13.33) WILD-TYPE" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N5-A4RM                      TCGA-N5-A4RN 
  "DEL PEAK 33(19Q13.33) MUTATED" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N5-A4RO                      TCGA-N5-A4RS 
  "DEL PEAK 33(19Q13.33) MUTATED" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RU 
  "DEL PEAK 33(19Q13.33) MUTATED" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N5-A4RV                      TCGA-N5-A59E 
  "DEL PEAK 33(19Q13.33) MUTATED" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N5-A59F                      TCGA-N8-A4PI 
"DEL PEAK 33(19Q13.33) WILD-TYPE" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N8-A4PL                      TCGA-N8-A4PM 
"DEL PEAK 33(19Q13.33) WILD-TYPE" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N8-A4PN                      TCGA-N8-A4PO 
  "DEL PEAK 33(19Q13.33) MUTATED" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N8-A4PP                      TCGA-N8-A4PQ 
  "DEL PEAK 33(19Q13.33) MUTATED" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N8-A56S                      TCGA-NA-A4QW 
  "DEL PEAK 33(19Q13.33) MUTATED"   "DEL PEAK 33(19Q13.33) MUTATED" 
                     TCGA-NA-A4QX                      TCGA-NA-A4QY 
  "DEL PEAK 33(19Q13.33) MUTATED" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-NA-A4R1                      TCGA-NA-A5I1 
"DEL PEAK 33(19Q13.33) WILD-TYPE" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 33(19Q13.33) WILD-TYPE" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 33(19Q13.33) WILD-TYPE"   "DEL PEAK 33(19Q13.33) MUTATED" 
                     TCGA-NG-A4VW                      TCGA-QM-A5NM 
"DEL PEAK 33(19Q13.33) WILD-TYPE" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N5-A4RA                      TCGA-N5-A4RD 
  "DEL PEAK 33(19Q13.33) MUTATED" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N5-A4RF                      TCGA-N5-A4RJ 
"DEL PEAK 33(19Q13.33) WILD-TYPE" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N5-A4RM                      TCGA-N5-A4RN 
  "DEL PEAK 33(19Q13.33) MUTATED" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N5-A4RO                      TCGA-N5-A4RS 
  "DEL PEAK 33(19Q13.33) MUTATED" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RU 
  "DEL PEAK 33(19Q13.33) MUTATED" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N5-A4RV                      TCGA-N5-A59E 
  "DEL PEAK 33(19Q13.33) MUTATED" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N5-A59F                      TCGA-N8-A4PI 
"DEL PEAK 33(19Q13.33) WILD-TYPE" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N8-A4PL                      TCGA-N8-A4PM 
"DEL PEAK 33(19Q13.33) WILD-TYPE" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N8-A4PN                      TCGA-N8-A4PO 
  "DEL PEAK 33(19Q13.33) MUTATED" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N8-A4PP                      TCGA-N8-A4PQ 
  "DEL PEAK 33(19Q13.33) MUTATED" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-N8-A56S                      TCGA-NA-A4QW 
  "DEL PEAK 33(19Q13.33) MUTATED"   "DEL PEAK 33(19Q13.33) MUTATED" 
                     TCGA-NA-A4QX                      TCGA-NA-A4QY 
  "DEL PEAK 33(19Q13.33) MUTATED" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-NA-A4R1                      TCGA-NA-A5I1 
"DEL PEAK 33(19Q13.33) WILD-TYPE" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 33(19Q13.33) WILD-TYPE" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
"DEL PEAK 33(19Q13.33) WILD-TYPE"   "DEL PEAK 33(19Q13.33) MUTATED" 
                     TCGA-NG-A4VW                      TCGA-QM-A5NM 
"DEL PEAK 33(19Q13.33) WILD-TYPE" "DEL PEAK 33(19Q13.33) WILD-TYPE" 
[1] "hr=" "1.6"
D57V2, continuous

Clustering(58) Variable = DEL PEAK 34(20P12.1) MUTATION ANALYSIS
D58V1, survival
                                sevent
clus2                             0  1
  DEL PEAK 34(20P12.1) MUTATED    3  2
  DEL PEAK 34(20P12.1) WILD-TYPE 10 17
  DEL PEAK 34(20P12.1) MUTATED DEL PEAK 34(20P12.1) WILD-TYPE 
                             5                             27 
  DEL PEAK 34(20P12.1) MUTATED DEL PEAK 34(20P12.1) WILD-TYPE 
                             2                             17 
$`DEL PEAK 34(20P12.1) MUTATED`
TCGA-N5-A4RJ TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QW TCGA-QM-A5NM 
       18.08         7.20         9.70        74.33         5.42 

$`DEL PEAK 34(20P12.1) WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.27         4.64        47.31         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59E TCGA-N5-A59F 
       29.95        69.63        50.17        59.70        14.70        11.87 
TCGA-N8-A4PI TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PQ 
       26.63        13.71        16.34        13.94        14.40         4.77 
TCGA-NA-A4QX TCGA-NA-A4QY TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA 
       27.39         3.72         6.64        85.35        10.42        23.47 
TCGA-ND-A4WC TCGA-ND-A4WF TCGA-NG-A4VW 
       15.16         5.49        31.17 

  DEL PEAK 34(20P12.1) MUTATED DEL PEAK 34(20P12.1) WILD-TYPE 
                          5.42                           3.72 
  DEL PEAK 34(20P12.1) MUTATED DEL PEAK 34(20P12.1) WILD-TYPE 
                         74.33                          85.35 
  DEL PEAK 34(20P12.1) MUTATED DEL PEAK 34(20P12.1) WILD-TYPE 
                          9.70                          16.34 
[1] "5.4 - 74.3 (9.7)"  "3.7 - 85.3 (16.3)"
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-N5-A4RA                     TCGA-N5-A4RD 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-N5-A4RF                     TCGA-N5-A4RJ 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-N5-A4RM                     TCGA-N5-A4RN 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-N5-A4RO                     TCGA-N5-A4RS 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-N5-A4RT                     TCGA-N5-A4RU 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-N5-A4RV                     TCGA-N5-A59E 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-N5-A59F                     TCGA-N8-A4PI 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-N8-A4PL                     TCGA-N8-A4PM 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-N8-A4PN                     TCGA-N8-A4PO 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-N8-A4PP                     TCGA-N8-A4PQ 
  "DEL PEAK 34(20P12.1) MUTATED" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-N8-A56S                     TCGA-NA-A4QW 
  "DEL PEAK 34(20P12.1) MUTATED"   "DEL PEAK 34(20P12.1) MUTATED" 
                    TCGA-NA-A4QX                     TCGA-NA-A4QY 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-NA-A4R1                     TCGA-NA-A5I1 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-ND-A4W6                     TCGA-ND-A4WA 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-ND-A4WC                     TCGA-ND-A4WF 
"DEL PEAK 34(20P12.1) WILD-TYPE" "DEL PEAK 34(20P12.1) WILD-TYPE" 
                    TCGA-NG-A4VW                     TCGA-QM-A5NM 
"DEL PEAK 34(20P12.1) WILD-TYPE"   "DEL PEAK 34(20P12.1) MUTATED" 
[1] "hr=" "1.2"
D58V2, continuous

Clustering(59) Variable = DEL PEAK 35(22Q13.31) MUTATION ANALYSIS
D59V1, survival
                                 sevent
clus2                              0  1
  DEL PEAK 35(22Q13.31) MUTATED    9 15
  DEL PEAK 35(22Q13.31) WILD-TYPE  4  4
  DEL PEAK 35(22Q13.31) MUTATED DEL PEAK 35(22Q13.31) WILD-TYPE 
                             24                               8 
  DEL PEAK 35(22Q13.31) MUTATED DEL PEAK 35(22Q13.31) WILD-TYPE 
                             15                               4 
$`DEL PEAK 35(22Q13.31) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RN TCGA-N5-A4RO 
       52.27         4.64        18.08         4.87        24.00        22.52 
TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N5-A59F TCGA-N8-A4PI 
       29.95        69.63        50.17        59.70        11.87        26.63 
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QX 
       13.71        16.34        14.40         7.20         9.70        27.39 
TCGA-NA-A4R1 TCGA-NA-A5I1 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF TCGA-QM-A5NM 
        6.64        85.35        23.47        15.16         5.49         5.42 

$`DEL PEAK 35(22Q13.31) WILD-TYPE`
TCGA-N5-A4RF TCGA-N5-A59E TCGA-N8-A4PN TCGA-N8-A4PQ TCGA-NA-A4QW TCGA-NA-A4QY 
       47.31        14.70        13.94         4.77        74.33         3.72 
TCGA-ND-A4W6 TCGA-NG-A4VW 
       10.42        31.17 

  DEL PEAK 35(22Q13.31) MUTATED DEL PEAK 35(22Q13.31) WILD-TYPE 
                           4.64                            3.72 
  DEL PEAK 35(22Q13.31) MUTATED DEL PEAK 35(22Q13.31) WILD-TYPE 
                          85.35                           74.33 
  DEL PEAK 35(22Q13.31) MUTATED DEL PEAK 35(22Q13.31) WILD-TYPE 
                          17.21                           14.32 
[1] "4.6 - 85.3 (17.2)" "3.7 - 74.3 (14.3)"
                     TCGA-N5-A4RA                      TCGA-N5-A4RD 
  "DEL PEAK 35(22Q13.31) MUTATED"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-N5-A4RF                      TCGA-N5-A4RJ 
"DEL PEAK 35(22Q13.31) WILD-TYPE"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-N5-A4RM                      TCGA-N5-A4RN 
  "DEL PEAK 35(22Q13.31) MUTATED"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-N5-A4RO                      TCGA-N5-A4RS 
  "DEL PEAK 35(22Q13.31) MUTATED"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RU 
  "DEL PEAK 35(22Q13.31) MUTATED"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-N5-A4RV                      TCGA-N5-A59E 
  "DEL PEAK 35(22Q13.31) MUTATED" "DEL PEAK 35(22Q13.31) WILD-TYPE" 
                     TCGA-N5-A59F                      TCGA-N8-A4PI 
  "DEL PEAK 35(22Q13.31) MUTATED"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-N8-A4PL                      TCGA-N8-A4PM 
  "DEL PEAK 35(22Q13.31) MUTATED"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-N8-A4PN                      TCGA-N8-A4PO 
"DEL PEAK 35(22Q13.31) WILD-TYPE"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-N8-A4PP                      TCGA-N8-A4PQ 
  "DEL PEAK 35(22Q13.31) MUTATED" "DEL PEAK 35(22Q13.31) WILD-TYPE" 
                     TCGA-N8-A56S                      TCGA-NA-A4QW 
  "DEL PEAK 35(22Q13.31) MUTATED" "DEL PEAK 35(22Q13.31) WILD-TYPE" 
                     TCGA-NA-A4QX                      TCGA-NA-A4QY 
  "DEL PEAK 35(22Q13.31) MUTATED" "DEL PEAK 35(22Q13.31) WILD-TYPE" 
                     TCGA-NA-A4R1                      TCGA-NA-A5I1 
  "DEL PEAK 35(22Q13.31) MUTATED"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 35(22Q13.31) WILD-TYPE"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
  "DEL PEAK 35(22Q13.31) MUTATED"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-NG-A4VW                      TCGA-QM-A5NM 
"DEL PEAK 35(22Q13.31) WILD-TYPE"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-N5-A4RA                      TCGA-N5-A4RD 
  "DEL PEAK 35(22Q13.31) MUTATED"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-N5-A4RF                      TCGA-N5-A4RJ 
"DEL PEAK 35(22Q13.31) WILD-TYPE"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-N5-A4RM                      TCGA-N5-A4RN 
  "DEL PEAK 35(22Q13.31) MUTATED"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-N5-A4RO                      TCGA-N5-A4RS 
  "DEL PEAK 35(22Q13.31) MUTATED"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RU 
  "DEL PEAK 35(22Q13.31) MUTATED"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-N5-A4RV                      TCGA-N5-A59E 
  "DEL PEAK 35(22Q13.31) MUTATED" "DEL PEAK 35(22Q13.31) WILD-TYPE" 
                     TCGA-N5-A59F                      TCGA-N8-A4PI 
  "DEL PEAK 35(22Q13.31) MUTATED"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-N8-A4PL                      TCGA-N8-A4PM 
  "DEL PEAK 35(22Q13.31) MUTATED"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-N8-A4PN                      TCGA-N8-A4PO 
"DEL PEAK 35(22Q13.31) WILD-TYPE"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-N8-A4PP                      TCGA-N8-A4PQ 
  "DEL PEAK 35(22Q13.31) MUTATED" "DEL PEAK 35(22Q13.31) WILD-TYPE" 
                     TCGA-N8-A56S                      TCGA-NA-A4QW 
  "DEL PEAK 35(22Q13.31) MUTATED" "DEL PEAK 35(22Q13.31) WILD-TYPE" 
                     TCGA-NA-A4QX                      TCGA-NA-A4QY 
  "DEL PEAK 35(22Q13.31) MUTATED" "DEL PEAK 35(22Q13.31) WILD-TYPE" 
                     TCGA-NA-A4R1                      TCGA-NA-A5I1 
  "DEL PEAK 35(22Q13.31) MUTATED"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 35(22Q13.31) WILD-TYPE"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
  "DEL PEAK 35(22Q13.31) MUTATED"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-NG-A4VW                      TCGA-QM-A5NM 
"DEL PEAK 35(22Q13.31) WILD-TYPE"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-N5-A4RA                      TCGA-N5-A4RD 
  "DEL PEAK 35(22Q13.31) MUTATED"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-N5-A4RF                      TCGA-N5-A4RJ 
"DEL PEAK 35(22Q13.31) WILD-TYPE"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-N5-A4RM                      TCGA-N5-A4RN 
  "DEL PEAK 35(22Q13.31) MUTATED"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-N5-A4RO                      TCGA-N5-A4RS 
  "DEL PEAK 35(22Q13.31) MUTATED"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-N5-A4RT                      TCGA-N5-A4RU 
  "DEL PEAK 35(22Q13.31) MUTATED"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-N5-A4RV                      TCGA-N5-A59E 
  "DEL PEAK 35(22Q13.31) MUTATED" "DEL PEAK 35(22Q13.31) WILD-TYPE" 
                     TCGA-N5-A59F                      TCGA-N8-A4PI 
  "DEL PEAK 35(22Q13.31) MUTATED"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-N8-A4PL                      TCGA-N8-A4PM 
  "DEL PEAK 35(22Q13.31) MUTATED"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-N8-A4PN                      TCGA-N8-A4PO 
"DEL PEAK 35(22Q13.31) WILD-TYPE"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-N8-A4PP                      TCGA-N8-A4PQ 
  "DEL PEAK 35(22Q13.31) MUTATED" "DEL PEAK 35(22Q13.31) WILD-TYPE" 
                     TCGA-N8-A56S                      TCGA-NA-A4QW 
  "DEL PEAK 35(22Q13.31) MUTATED" "DEL PEAK 35(22Q13.31) WILD-TYPE" 
                     TCGA-NA-A4QX                      TCGA-NA-A4QY 
  "DEL PEAK 35(22Q13.31) MUTATED" "DEL PEAK 35(22Q13.31) WILD-TYPE" 
                     TCGA-NA-A4R1                      TCGA-NA-A5I1 
  "DEL PEAK 35(22Q13.31) MUTATED"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-ND-A4W6                      TCGA-ND-A4WA 
"DEL PEAK 35(22Q13.31) WILD-TYPE"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-ND-A4WC                      TCGA-ND-A4WF 
  "DEL PEAK 35(22Q13.31) MUTATED"   "DEL PEAK 35(22Q13.31) MUTATED" 
                     TCGA-NG-A4VW                      TCGA-QM-A5NM 
"DEL PEAK 35(22Q13.31) WILD-TYPE"   "DEL PEAK 35(22Q13.31) MUTATED" 
[1] "hr=" "1.2"
D59V2, continuous

Clustering(60) Variable = DEL PEAK 36(XP21.1) MUTATION ANALYSIS
D60V1, survival
                               sevent
clus2                            0  1
  DEL PEAK 36(XP21.1) MUTATED    4 10
  DEL PEAK 36(XP21.1) WILD-TYPE  9  9
  DEL PEAK 36(XP21.1) MUTATED DEL PEAK 36(XP21.1) WILD-TYPE 
                           14                            18 
  DEL PEAK 36(XP21.1) MUTATED DEL PEAK 36(XP21.1) WILD-TYPE 
                           10                             9 
$`DEL PEAK 36(XP21.1) MUTATED`
TCGA-N5-A4RD TCGA-N5-A4RN TCGA-N5-A4RS TCGA-N5-A4RT TCGA-N5-A4RU TCGA-N8-A4PI 
        4.64        24.00        29.95        69.63        50.17        26.63 
TCGA-N8-A4PO TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QX TCGA-NA-A4R1 TCGA-ND-A4W6 
       14.40         7.20         9.70        27.39         6.64        10.42 
TCGA-ND-A4WA TCGA-ND-A4WF 
       23.47         5.49 

$`DEL PEAK 36(XP21.1) WILD-TYPE`
TCGA-N5-A4RA TCGA-N5-A4RF TCGA-N5-A4RJ TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RV 
       52.27        47.31        18.08         4.87        22.52        59.70 
TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PQ 
       14.70        11.87        13.71        16.34        13.94         4.77 
TCGA-NA-A4QW TCGA-NA-A4QY TCGA-NA-A5I1 TCGA-ND-A4WC TCGA-NG-A4VW TCGA-QM-A5NM 
       74.33         3.72        85.35        15.16        31.17         5.42 

  DEL PEAK 36(XP21.1) MUTATED DEL PEAK 36(XP21.1) WILD-TYPE 
                         4.64                          3.72 
  DEL PEAK 36(XP21.1) MUTATED DEL PEAK 36(XP21.1) WILD-TYPE 
                        69.63                         85.35 
  DEL PEAK 36(XP21.1) MUTATED DEL PEAK 36(XP21.1) WILD-TYPE 
                       18.935                        15.750 
[1] "4.6 - 69.6 (18.9)" "3.7 - 85.3 (15.8)"
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
"DEL PEAK 36(XP21.1) WILD-TYPE"   "DEL PEAK 36(XP21.1) MUTATED" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"DEL PEAK 36(XP21.1) WILD-TYPE" "DEL PEAK 36(XP21.1) WILD-TYPE" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
"DEL PEAK 36(XP21.1) WILD-TYPE"   "DEL PEAK 36(XP21.1) MUTATED" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
"DEL PEAK 36(XP21.1) WILD-TYPE"   "DEL PEAK 36(XP21.1) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "DEL PEAK 36(XP21.1) MUTATED"   "DEL PEAK 36(XP21.1) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
"DEL PEAK 36(XP21.1) WILD-TYPE" "DEL PEAK 36(XP21.1) WILD-TYPE" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
"DEL PEAK 36(XP21.1) WILD-TYPE"   "DEL PEAK 36(XP21.1) MUTATED" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
"DEL PEAK 36(XP21.1) WILD-TYPE" "DEL PEAK 36(XP21.1) WILD-TYPE" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
"DEL PEAK 36(XP21.1) WILD-TYPE"   "DEL PEAK 36(XP21.1) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "DEL PEAK 36(XP21.1) MUTATED" "DEL PEAK 36(XP21.1) WILD-TYPE" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
  "DEL PEAK 36(XP21.1) MUTATED" "DEL PEAK 36(XP21.1) WILD-TYPE" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "DEL PEAK 36(XP21.1) MUTATED" "DEL PEAK 36(XP21.1) WILD-TYPE" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
  "DEL PEAK 36(XP21.1) MUTATED" "DEL PEAK 36(XP21.1) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK 36(XP21.1) MUTATED"   "DEL PEAK 36(XP21.1) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK 36(XP21.1) WILD-TYPE"   "DEL PEAK 36(XP21.1) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK 36(XP21.1) WILD-TYPE" "DEL PEAK 36(XP21.1) WILD-TYPE" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
"DEL PEAK 36(XP21.1) WILD-TYPE"   "DEL PEAK 36(XP21.1) MUTATED" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"DEL PEAK 36(XP21.1) WILD-TYPE" "DEL PEAK 36(XP21.1) WILD-TYPE" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
"DEL PEAK 36(XP21.1) WILD-TYPE"   "DEL PEAK 36(XP21.1) MUTATED" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
"DEL PEAK 36(XP21.1) WILD-TYPE"   "DEL PEAK 36(XP21.1) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "DEL PEAK 36(XP21.1) MUTATED"   "DEL PEAK 36(XP21.1) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
"DEL PEAK 36(XP21.1) WILD-TYPE" "DEL PEAK 36(XP21.1) WILD-TYPE" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
"DEL PEAK 36(XP21.1) WILD-TYPE"   "DEL PEAK 36(XP21.1) MUTATED" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
"DEL PEAK 36(XP21.1) WILD-TYPE" "DEL PEAK 36(XP21.1) WILD-TYPE" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
"DEL PEAK 36(XP21.1) WILD-TYPE"   "DEL PEAK 36(XP21.1) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "DEL PEAK 36(XP21.1) MUTATED" "DEL PEAK 36(XP21.1) WILD-TYPE" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
  "DEL PEAK 36(XP21.1) MUTATED" "DEL PEAK 36(XP21.1) WILD-TYPE" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "DEL PEAK 36(XP21.1) MUTATED" "DEL PEAK 36(XP21.1) WILD-TYPE" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
  "DEL PEAK 36(XP21.1) MUTATED" "DEL PEAK 36(XP21.1) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK 36(XP21.1) MUTATED"   "DEL PEAK 36(XP21.1) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK 36(XP21.1) WILD-TYPE"   "DEL PEAK 36(XP21.1) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK 36(XP21.1) WILD-TYPE" "DEL PEAK 36(XP21.1) WILD-TYPE" 
                   TCGA-N5-A4RA                    TCGA-N5-A4RD 
"DEL PEAK 36(XP21.1) WILD-TYPE"   "DEL PEAK 36(XP21.1) MUTATED" 
                   TCGA-N5-A4RF                    TCGA-N5-A4RJ 
"DEL PEAK 36(XP21.1) WILD-TYPE" "DEL PEAK 36(XP21.1) WILD-TYPE" 
                   TCGA-N5-A4RM                    TCGA-N5-A4RN 
"DEL PEAK 36(XP21.1) WILD-TYPE"   "DEL PEAK 36(XP21.1) MUTATED" 
                   TCGA-N5-A4RO                    TCGA-N5-A4RS 
"DEL PEAK 36(XP21.1) WILD-TYPE"   "DEL PEAK 36(XP21.1) MUTATED" 
                   TCGA-N5-A4RT                    TCGA-N5-A4RU 
  "DEL PEAK 36(XP21.1) MUTATED"   "DEL PEAK 36(XP21.1) MUTATED" 
                   TCGA-N5-A4RV                    TCGA-N5-A59E 
"DEL PEAK 36(XP21.1) WILD-TYPE" "DEL PEAK 36(XP21.1) WILD-TYPE" 
                   TCGA-N5-A59F                    TCGA-N8-A4PI 
"DEL PEAK 36(XP21.1) WILD-TYPE"   "DEL PEAK 36(XP21.1) MUTATED" 
                   TCGA-N8-A4PL                    TCGA-N8-A4PM 
"DEL PEAK 36(XP21.1) WILD-TYPE" "DEL PEAK 36(XP21.1) WILD-TYPE" 
                   TCGA-N8-A4PN                    TCGA-N8-A4PO 
"DEL PEAK 36(XP21.1) WILD-TYPE"   "DEL PEAK 36(XP21.1) MUTATED" 
                   TCGA-N8-A4PP                    TCGA-N8-A4PQ 
  "DEL PEAK 36(XP21.1) MUTATED" "DEL PEAK 36(XP21.1) WILD-TYPE" 
                   TCGA-N8-A56S                    TCGA-NA-A4QW 
  "DEL PEAK 36(XP21.1) MUTATED" "DEL PEAK 36(XP21.1) WILD-TYPE" 
                   TCGA-NA-A4QX                    TCGA-NA-A4QY 
  "DEL PEAK 36(XP21.1) MUTATED" "DEL PEAK 36(XP21.1) WILD-TYPE" 
                   TCGA-NA-A4R1                    TCGA-NA-A5I1 
  "DEL PEAK 36(XP21.1) MUTATED" "DEL PEAK 36(XP21.1) WILD-TYPE" 
                   TCGA-ND-A4W6                    TCGA-ND-A4WA 
  "DEL PEAK 36(XP21.1) MUTATED"   "DEL PEAK 36(XP21.1) MUTATED" 
                   TCGA-ND-A4WC                    TCGA-ND-A4WF 
"DEL PEAK 36(XP21.1) WILD-TYPE"   "DEL PEAK 36(XP21.1) MUTATED" 
                   TCGA-NG-A4VW                    TCGA-QM-A5NM 
"DEL PEAK 36(XP21.1) WILD-TYPE" "DEL PEAK 36(XP21.1) WILD-TYPE" 
[1] "hr=" "1.7"
D60V2, continuous

Clustering(61) Variable = DEL PEAK 37(XQ25) MUTATION ANALYSIS
D61V1, survival
                             sevent
clus2                          0  1
  DEL PEAK 37(XQ25) MUTATED    5  8
  DEL PEAK 37(XQ25) WILD-TYPE  8 11
  DEL PEAK 37(XQ25) MUTATED DEL PEAK 37(XQ25) WILD-TYPE 
                         13                          19 
  DEL PEAK 37(XQ25) MUTATED DEL PEAK 37(XQ25) WILD-TYPE 
                          8                          11 
$`DEL PEAK 37(XQ25) MUTATED`
TCGA-N5-A4RA TCGA-N5-A4RD TCGA-N5-A4RF TCGA-N5-A4RM TCGA-N5-A4RO TCGA-N5-A4RT 
       52.27         4.64        47.31         4.87        22.52        69.63 
TCGA-N5-A59E TCGA-N5-A59F TCGA-N8-A4PP TCGA-N8-A56S TCGA-NA-A4QW TCGA-NA-A4R1 
       14.70        11.87         7.20         9.70        74.33         6.64 
TCGA-QM-A5NM 
        5.42 

$`DEL PEAK 37(XQ25) WILD-TYPE`
TCGA-N5-A4RJ TCGA-N5-A4RN TCGA-N5-A4RS TCGA-N5-A4RU TCGA-N5-A4RV TCGA-N8-A4PI 
       18.08        24.00        29.95        50.17        59.70        26.63 
TCGA-N8-A4PL TCGA-N8-A4PM TCGA-N8-A4PN TCGA-N8-A4PO TCGA-N8-A4PQ TCGA-NA-A4QX 
       13.71        16.34        13.94        14.40         4.77        27.39 
TCGA-NA-A4QY TCGA-NA-A5I1 TCGA-ND-A4W6 TCGA-ND-A4WA TCGA-ND-A4WC TCGA-ND-A4WF 
        3.72        85.35        10.42        23.47        15.16         5.49 
TCGA-NG-A4VW 
       31.17 

  DEL PEAK 37(XQ25) MUTATED DEL PEAK 37(XQ25) WILD-TYPE 
                       4.64                        3.72 
  DEL PEAK 37(XQ25) MUTATED DEL PEAK 37(XQ25) WILD-TYPE 
                      74.33                       85.35 
  DEL PEAK 37(XQ25) MUTATED DEL PEAK 37(XQ25) WILD-TYPE 
                      11.87                       18.08 
[1] "4.6 - 74.3 (11.9)" "3.7 - 85.3 (18.1)"
                 TCGA-N5-A4RA                  TCGA-N5-A4RD 
  "DEL PEAK 37(XQ25) MUTATED"   "DEL PEAK 37(XQ25) MUTATED" 
                 TCGA-N5-A4RF                  TCGA-N5-A4RJ 
  "DEL PEAK 37(XQ25) MUTATED" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-N5-A4RM                  TCGA-N5-A4RN 
  "DEL PEAK 37(XQ25) MUTATED" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-N5-A4RO                  TCGA-N5-A4RS 
  "DEL PEAK 37(XQ25) MUTATED" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RU 
  "DEL PEAK 37(XQ25) MUTATED" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-N5-A4RV                  TCGA-N5-A59E 
"DEL PEAK 37(XQ25) WILD-TYPE"   "DEL PEAK 37(XQ25) MUTATED" 
                 TCGA-N5-A59F                  TCGA-N8-A4PI 
  "DEL PEAK 37(XQ25) MUTATED" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-N8-A4PL                  TCGA-N8-A4PM 
"DEL PEAK 37(XQ25) WILD-TYPE" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-N8-A4PN                  TCGA-N8-A4PO 
"DEL PEAK 37(XQ25) WILD-TYPE" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-N8-A4PP                  TCGA-N8-A4PQ 
  "DEL PEAK 37(XQ25) MUTATED" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-N8-A56S                  TCGA-NA-A4QW 
  "DEL PEAK 37(XQ25) MUTATED"   "DEL PEAK 37(XQ25) MUTATED" 
                 TCGA-NA-A4QX                  TCGA-NA-A4QY 
"DEL PEAK 37(XQ25) WILD-TYPE" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-NA-A4R1                  TCGA-NA-A5I1 
  "DEL PEAK 37(XQ25) MUTATED" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"DEL PEAK 37(XQ25) WILD-TYPE" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"DEL PEAK 37(XQ25) WILD-TYPE" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-NG-A4VW                  TCGA-QM-A5NM 
"DEL PEAK 37(XQ25) WILD-TYPE"   "DEL PEAK 37(XQ25) MUTATED" 
                 TCGA-N5-A4RA                  TCGA-N5-A4RD 
  "DEL PEAK 37(XQ25) MUTATED"   "DEL PEAK 37(XQ25) MUTATED" 
                 TCGA-N5-A4RF                  TCGA-N5-A4RJ 
  "DEL PEAK 37(XQ25) MUTATED" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-N5-A4RM                  TCGA-N5-A4RN 
  "DEL PEAK 37(XQ25) MUTATED" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-N5-A4RO                  TCGA-N5-A4RS 
  "DEL PEAK 37(XQ25) MUTATED" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RU 
  "DEL PEAK 37(XQ25) MUTATED" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-N5-A4RV                  TCGA-N5-A59E 
"DEL PEAK 37(XQ25) WILD-TYPE"   "DEL PEAK 37(XQ25) MUTATED" 
                 TCGA-N5-A59F                  TCGA-N8-A4PI 
  "DEL PEAK 37(XQ25) MUTATED" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-N8-A4PL                  TCGA-N8-A4PM 
"DEL PEAK 37(XQ25) WILD-TYPE" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-N8-A4PN                  TCGA-N8-A4PO 
"DEL PEAK 37(XQ25) WILD-TYPE" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-N8-A4PP                  TCGA-N8-A4PQ 
  "DEL PEAK 37(XQ25) MUTATED" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-N8-A56S                  TCGA-NA-A4QW 
  "DEL PEAK 37(XQ25) MUTATED"   "DEL PEAK 37(XQ25) MUTATED" 
                 TCGA-NA-A4QX                  TCGA-NA-A4QY 
"DEL PEAK 37(XQ25) WILD-TYPE" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-NA-A4R1                  TCGA-NA-A5I1 
  "DEL PEAK 37(XQ25) MUTATED" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"DEL PEAK 37(XQ25) WILD-TYPE" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"DEL PEAK 37(XQ25) WILD-TYPE" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-NG-A4VW                  TCGA-QM-A5NM 
"DEL PEAK 37(XQ25) WILD-TYPE"   "DEL PEAK 37(XQ25) MUTATED" 
                 TCGA-N5-A4RA                  TCGA-N5-A4RD 
  "DEL PEAK 37(XQ25) MUTATED"   "DEL PEAK 37(XQ25) MUTATED" 
                 TCGA-N5-A4RF                  TCGA-N5-A4RJ 
  "DEL PEAK 37(XQ25) MUTATED" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-N5-A4RM                  TCGA-N5-A4RN 
  "DEL PEAK 37(XQ25) MUTATED" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-N5-A4RO                  TCGA-N5-A4RS 
  "DEL PEAK 37(XQ25) MUTATED" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-N5-A4RT                  TCGA-N5-A4RU 
  "DEL PEAK 37(XQ25) MUTATED" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-N5-A4RV                  TCGA-N5-A59E 
"DEL PEAK 37(XQ25) WILD-TYPE"   "DEL PEAK 37(XQ25) MUTATED" 
                 TCGA-N5-A59F                  TCGA-N8-A4PI 
  "DEL PEAK 37(XQ25) MUTATED" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-N8-A4PL                  TCGA-N8-A4PM 
"DEL PEAK 37(XQ25) WILD-TYPE" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-N8-A4PN                  TCGA-N8-A4PO 
"DEL PEAK 37(XQ25) WILD-TYPE" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-N8-A4PP                  TCGA-N8-A4PQ 
  "DEL PEAK 37(XQ25) MUTATED" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-N8-A56S                  TCGA-NA-A4QW 
  "DEL PEAK 37(XQ25) MUTATED"   "DEL PEAK 37(XQ25) MUTATED" 
                 TCGA-NA-A4QX                  TCGA-NA-A4QY 
"DEL PEAK 37(XQ25) WILD-TYPE" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-NA-A4R1                  TCGA-NA-A5I1 
  "DEL PEAK 37(XQ25) MUTATED" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-ND-A4W6                  TCGA-ND-A4WA 
"DEL PEAK 37(XQ25) WILD-TYPE" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-ND-A4WC                  TCGA-ND-A4WF 
"DEL PEAK 37(XQ25) WILD-TYPE" "DEL PEAK 37(XQ25) WILD-TYPE" 
                 TCGA-NG-A4VW                  TCGA-QM-A5NM 
"DEL PEAK 37(XQ25) WILD-TYPE"   "DEL PEAK 37(XQ25) MUTATED" 
[1] "hr=" "1.2"
D61V2, continuous
> q(save="no")
