Clinical Features Time to Death AGE NEOPLASM.DISEASESTAGE PATHOLOGY.T.STAGE PATHOLOGY.N.STAGE PATHOLOGY.M.STAGE GENDER HISTOLOGICAL.TYPE RADIATIONS.RADIATION.REGIMENINDICATION COMPLETENESS.OF.RESECTION NUMBER.OF.LYMPH.NODES nCNV (%) nWild-Type logrank test_P logrank test_Q t-test_P t-test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q t-test_P t-test_Q 1p gain 30 (7%) 394 0.38939 1 0.58884 1 0.8265 1 1 1 0.53186 1 0.17322 1 0.84982 1 0.78249 1 0.19803 1 0.11125 1 0.28697 1 1q gain 75 (18%) 349 0.97061 1 0.85598 1 0.123 1 0.50833 1 0.14235 1 0.0052973 1 0.20538 1 0.3484 1 0.44318 1 0.22423 1 0.13552 1 2p gain 73 (17%) 351 0.39944 1 0.64774 1 0.33386 1 0.51185 1 0.33264 1 0.42642 1 0.60849 1 0.035289 1 0.43352 1 0.054959 1 0.67075 1 2q gain 69 (16%) 355 0.20477 1 0.23399 1 0.17256 1 0.40017 1 0.1218 1 0.23746 1 0.7928 1 0.051652 1 0.41388 1 0.11226 1 0.49383 1 3p gain 42 (10%) 382 0.32674 1 0.12103 1 0.00061448 0.521 0.80274 1 0.13303 1 0.0003162 0.271 1 1 0.33288 1 1 1 0.94209 1 0.1726 1 3q gain 61 (14%) 363 0.16084 1 0.22981 1 0.01712 1 0.59469 1 0.059083 1 0.00239 1 0.68013 1 0.14664 1 1 1 0.8996 1 0.19833 1 4p gain 9 (2%) 415 0.65268 1 0.75982 1 0.67511 1 0.72396 1 0.038485 1 0.14366 1 0.51184 1 1 1 1 1 1 1 0.35239 1 4q gain 15 (4%) 409 0.97015 1 0.48044 1 0.50302 1 0.89405 1 0.050031 1 0.42993 1 0.79327 1 0.70429 1 1 1 0.47424 1 0.28662 1 5p gain 62 (15%) 362 0.9028 1 0.17868 1 0.27674 1 0.87321 1 0.10662 1 0.84455 1 0.17118 1 0.83834 1 1 1 0.46409 1 0.30827 1 5q gain 38 (9%) 386 0.54979 1 0.90559 1 0.80574 1 1 1 0.52891 1 0.95779 1 0.7344 1 0.45068 1 1 1 0.39669 1 0.9867 1 6p gain 78 (18%) 346 0.23338 1 0.91866 1 0.25528 1 0.8463 1 0.028122 1 0.76618 1 0.4513 1 0.18823 1 0.0060309 1 0.71516 1 0.061302 1 6q gain 71 (17%) 353 0.29892 1 0.68433 1 0.15681 1 1 1 0.0456 1 0.59951 1 0.79538 1 0.12263 1 0.0045309 1 0.88001 1 0.10594 1 7p gain 232 (55%) 192 0.69323 1 0.23273 1 0.00059827 0.508 0.32508 1 0.00025762 0.221 0.02569 1 1 1 0.020422 1 0.25492 1 0.20573 1 0.05542 1 7q gain 210 (50%) 214 0.59149 1 0.15091 1 0.025826 1 0.16674 1 0.01614 1 0.017556 1 1 1 0.042775 1 0.62058 1 0.34589 1 0.16757 1 8p gain 121 (29%) 303 0.52269 1 0.27081 1 0.67788 1 0.78982 1 0.43544 1 0.97823 1 0.7479 1 0.15083 1 0.19722 1 0.58199 1 0.47941 1 8q gain 210 (50%) 214 0.81517 1 0.10109 1 0.77232 1 0.20715 1 0.84158 1 0.5132 1 0.69807 1 0.020404 1 0.12062 1 0.52787 1 0.69238 1 9p gain 74 (17%) 350 0.10147 1 0.45054 1 0.030212 1 0.52585 1 0.071016 1 0.22208 1 1 1 0.055657 1 1 1 0.74217 1 0.1463 1 9q gain 65 (15%) 359 0.17088 1 0.59345 1 0.16397 1 0.42579 1 0.25087 1 0.78497 1 0.78742 1 0.074243 1 1 1 0.83503 1 0.21035 1 10p gain 32 (8%) 392 0.13913 1 0.59453 1 0.79608 1 0.25924 1 0.042019 1 0.26557 1 0.85421 1 0.78411 1 1 1 0.26313 1 0.098306 1 10q gain 18 (4%) 406 0.61653 1 0.051064 1 0.74834 1 0.87842 1 0.049027 1 0.45763 1 0.63105 1 0.71679 1 1 1 0.5557 1 0.10882 1 11p gain 49 (12%) 375 0.86405 1 0.013597 1 0.044135 1 0.13913 1 0.036812 1 0.033042 1 0.76241 1 0.001133 0.951 0.036421 1 0.23134 1 0.21344 1 11q gain 47 (11%) 377 0.78049 1 0.0011312 0.95 0.050882 1 0.4368 1 0.02317 1 0.0874 1 0.75882 1 0.0019278 1 0.033593 1 0.40234 1 0.27937 1 12p gain 87 (21%) 337 0.43762 1 0.092448 1 0.13779 1 0.36677 1 0.25197 1 0.079924 1 1 1 0.85824 1 1 1 0.57868 1 0.068162 1 12q gain 80 (19%) 344 0.93082 1 0.040882 1 0.01993 1 0.47434 1 0.043548 1 0.013183 1 0.90142 1 0.35743 1 1 1 0.36759 1 0.00023068 0.198 13q gain 244 (58%) 180 0.45423 1 0.38952 1 0.006783 1 0.97952 1 0.0054494 1 0.0047074 1 0.37555 1 1.5595e-06 0.00135 0.26536 1 0.041754 1 0.6855 1 14q gain 33 (8%) 391 0.59908 1 0.93575 1 0.92558 1 0.90385 1 0.51564 1 0.0089573 1 0.46827 1 0.17331 1 1 1 0.71377 1 0.36954 1 15q gain 11 (3%) 413 0.3693 1 0.33588 1 0.74056 1 0.38704 1 0.47867 1 0.12217 1 0.12339 1 1 1 1 1 0.047308 1 0.51708 1 16p gain 102 (24%) 322 0.69385 1 0.13198 1 0.012136 1 0.93524 1 0.0054863 1 0.42819 1 1 1 0.0039297 1 0.56299 1 0.93998 1 0.15278 1 16q gain 99 (23%) 325 0.5791 1 0.079344 1 0.002876 1 0.96753 1 0.0045887 1 0.46497 1 0.73042 1 0.0059884 1 0.55062 1 0.75378 1 0.22062 1 17p gain 24 (6%) 400 0.12642 1 0.985 1 0.7611 1 0.71603 1 0.2989 1 0.071139 1 0.83414 1 1 1 1 1 0.89244 1 0.65564 1 17q gain 74 (17%) 350 0.35908 1 0.34575 1 0.16902 1 0.33189 1 0.14915 1 0.0038191 1 0.79775 1 0.2501 1 0.43837 1 0.30346 1 0.42458 1 18p gain 22 (5%) 402 0.99542 1 0.36243 1 0.0089786 1 0.87912 1 0.077824 1 0.00050336 0.429 0.38335 1 0.015508 1 1 1 0.66798 1 0.13709 1 18q gain 14 (3%) 410 0.41662 1 0.029811 1 0.77091 1 0.57506 1 0.24024 1 0.9574 1 0.43078 1 0.024933 1 1 1 1 1 0.81264 1 19p gain 66 (16%) 358 0.2681 1 0.64222 1 0.59056 1 0.49582 1 0.049058 1 0.030686 1 0.043663 1 0.16909 1 0.39885 1 0.27555 1 0.21683 1 19q gain 75 (18%) 349 0.31 1 0.8128 1 0.8507 1 0.88694 1 0.12094 1 0.015067 1 0.12833 1 0.85209 1 0.44318 1 0.46999 1 0.84744 1 20p gain 228 (54%) 196 0.34016 1 0.4171 1 0.00062478 0.529 0.90495 1 0.1943 1 0.00145 1 0.11821 1 0.00042431 0.362 0.25251 1 0.076828 1 0.27458 1 20q gain 300 (71%) 124 0.76032 1 0.26235 1 0.0021125 1 0.27263 1 0.048115 1 0.0067152 1 0.39376 1 9.9787e-06 0.00863 0.55912 1 0.13207 1 0.086363 1 21q gain 20 (5%) 404 0.12475 1 0.00095327 0.802 0.57048 1 0.12131 1 0.4058 1 0.6897 1 0.82084 1 0.72499 1 1 1 0.47424 1 0.80726 1 22q gain 10 (2%) 414 0.61082 1 0.98864 1 0.61676 1 0.31977 1 0.82215 1 0.40222 1 1 1 0.37272 1 1 1 0.29472 1 0.44254 1 xq gain 68 (16%) 356 0.97163 1 0.58287 1 0.14771 1 0.0327 1 0.45576 1 0.14823 1 0.59668 1 0.32741 1 0.4089 1 0.91305 1 0.99462 1 1p loss 91 (21%) 333 0.035088 1 0.92875 1 0.084106 1 0.74301 1 0.0029409 1 0.012346 1 0.63553 1 0.21885 1 1 1 0.50187 1 0.014488 1 1q loss 52 (12%) 372 0.16074 1 0.58727 1 0.29752 1 0.73434 1 0.075675 1 0.16346 1 0.37463 1 0.51648 1 1 1 0.50064 1 0.16293 1 2p loss 6 (1%) 418 0.0008897 0.75 0.76123 1 0.7084 1 0.83872 1 0.85026 1 0.75503 1 0.22158 1 1 1 1 1 1 1 0.80621 1 2q loss 7 (2%) 417 0.0008897 0.75 0.7522 1 0.75942 1 0.8714 1 1 1 0.69602 1 0.12763 1 0.60175 1 1 1 1 1 0.53583 1 3p loss 50 (12%) 374 0.0962 1 0.65699 1 0.49039 1 0.1662 1 0.14032 1 0.046389 1 0.65265 1 0.37015 1 1 1 0.8459 1 0.68197 1 3q loss 31 (7%) 393 0.14918 1 0.3151 1 0.84015 1 0.48776 1 0.93281 1 0.20263 1 0.70909 1 0.78276 1 1 1 0.93286 1 0.25789 1 4p loss 126 (30%) 298 0.056141 1 0.98654 1 0.0012987 1 0.43368 1 0.0015746 1 0.00018163 0.157 0.83179 1 0.0072224 1 0.025804 1 0.031452 1 0.012159 1 4q loss 114 (27%) 310 0.028071 1 0.89398 1 0.016013 1 0.59254 1 0.001912 1 0.035561 1 0.44287 1 0.072195 1 0.019063 1 0.34804 1 0.026617 1 5p loss 54 (13%) 370 0.9077 1 0.2883 1 0.0094929 1 0.31174 1 0.0062317 1 0.089159 1 1 1 0.27716 1 0.04394 1 0.52925 1 0.061209 1 5q loss 74 (17%) 350 0.24384 1 0.26007 1 0.046535 1 0.82784 1 0.00058683 0.499 0.063862 1 0.52453 1 0.44606 1 0.080081 1 0.66929 1 0.0055819 1 6p loss 33 (8%) 391 0.32259 1 0.36813 1 0.96178 1 0.10347 1 0.74446 1 0.22692 1 0.46827 1 0.78646 1 1 1 0.12318 1 0.77891 1 6q loss 44 (10%) 380 0.17104 1 0.9456 1 0.40564 1 0.32081 1 0.16687 1 0.0077148 1 0.6364 1 0.48697 1 1 1 0.17116 1 0.09167 1 7q loss 3 (1%) 421 0.5707 1 0.13042 1 0.41563 1 0.67882 1 1 1 0.91865 1 0.60092 1 1 1 1 1 1 1 0.011382 1 8p loss 133 (31%) 291 0.802 1 0.7711 1 0.01314 1 0.15135 1 0.00033365 0.286 0.0067693 1 0.20961 1 0.11982 1 1 1 0.073684 1 0.0056881 1 8q loss 23 (5%) 401 0.67638 1 0.89822 1 0.10446 1 0.050435 1 0.047834 1 0.030737 1 0.5231 1 0.52211 1 1 1 0.88048 1 0.19354 1 9p loss 49 (12%) 375 0.12988 1 0.20738 1 0.98189 1 0.20024 1 0.49048 1 0.65096 1 0.44722 1 0.067162 1 1 1 0.50435 1 0.53001 1 9q loss 49 (12%) 375 0.067069 1 0.030226 1 0.82358 1 0.25207 1 0.19828 1 0.30081 1 1 1 0.065708 1 1 1 0.50435 1 0.61993 1 10p loss 64 (15%) 360 0.66877 1 0.22749 1 0.037927 1 0.8956 1 0.084806 1 0.10893 1 0.78689 1 0.22738 1 0.060837 1 0.47816 1 0.39321 1 10q loss 68 (16%) 356 0.50793 1 0.14884 1 0.14993 1 0.92669 1 0.22503 1 0.28363 1 0.79136 1 0.16796 1 0.068262 1 0.23135 1 0.65115 1 11p loss 49 (12%) 375 0.2953 1 0.90415 1 0.81476 1 0.89204 1 0.10661 1 0.051801 1 0.64854 1 0.82109 1 1 1 0.45782 1 0.1459 1 11q loss 59 (14%) 365 0.3399 1 0.73675 1 0.44812 1 0.22166 1 0.073969 1 0.039737 1 0.77874 1 1 1 1 1 0.43322 1 0.30187 1 12p loss 44 (10%) 380 0.29094 1 0.46354 1 0.39403 1 0.55894 1 0.078204 1 0.46393 1 1 1 0.018413 1 0.28072 1 0.94938 1 0.39625 1 12q loss 47 (11%) 377 0.48159 1 0.4396 1 0.19564 1 0.57646 1 0.04708 1 0.34721 1 0.53906 1 0.065195 1 1 1 0.87102 1 0.31207 1 13q loss 11 (3%) 413 0.81572 1 0.89316 1 0.62266 1 0.4657 1 0.020559 1 0.70319 1 1 1 0.12923 1 1 1 0.76409 1 0.14376 1 14q loss 128 (30%) 296 0.20078 1 0.48684 1 0.17791 1 0.35246 1 0.12309 1 0.052234 1 1 1 2.6946e-05 0.0233 0.55698 1 0.60899 1 0.88587 1 15q loss 144 (34%) 280 0.48023 1 0.86397 1 0.053952 1 0.52479 1 0.034222 1 0.01288 1 1 1 0.0090825 1 0.038634 1 0.39765 1 0.37534 1 16p loss 27 (6%) 397 0.031099 1 0.34018 1 0.53603 1 0.69215 1 0.45338 1 0.6611 1 0.42606 1 0.37534 1 1 1 0.19047 1 0.93979 1 16q loss 25 (6%) 399 0.047973 1 0.16026 1 0.58942 1 0.89817 1 0.42576 1 0.64057 1 0.68075 1 0.55168 1 1 1 0.26057 1 0.67549 1 17p loss 221 (52%) 203 0.11087 1 0.10563 1 0.00033859 0.289 0.78369 1 0.00024131 0.207 0.0098978 1 0.079858 1 8.9445e-06 0.00775 0.24958 1 0.053051 1 0.0005104 0.434 17q loss 61 (14%) 363 0.96266 1 0.4467 1 0.02447 1 0.34107 1 0.00851 1 0.092787 1 0.40554 1 0.83813 1 1 1 0.68072 1 0.042869 1 18p loss 236 (56%) 188 0.4655 1 0.096861 1 0.00081305 0.686 0.85273 1 0.0039203 1 0.0012418 1 0.55734 1 3.4306e-10 2.98e-07 0.25786 1 0.031477 1 0.026981 1 18q loss 251 (59%) 173 0.68141 1 0.061371 1 0.0001882 0.162 0.63682 1 0.00039221 0.335 0.003694 1 0.55307 1 1.9816e-09 1.72e-06 0.27367 1 0.14944 1 0.071295 1 19p loss 38 (9%) 386 0.50076 1 0.35145 1 0.0027468 1 1 1 0.0014129 1 0.00066912 0.566 0.7344 1 0.60708 1 0.24602 1 0.24006 1 0.0028098 1 19q loss 32 (8%) 392 0.52147 1 0.77842 1 0.0033385 1 0.96549 1 0.0042759 1 0.00071362 0.603 0.46689 1 0.57985 1 0.21022 1 0.43179 1 0.0086872 1 20p loss 43 (10%) 381 0.81756 1 0.88025 1 0.26709 1 0.80396 1 0.60928 1 0.89684 1 0.62909 1 1 1 1 1 1 1 0.20726 1 20q loss 6 (1%) 418 0.10681 1 0.024699 1 0.86997 1 0.49974 1 0.31199 1 0.88205 1 0.68941 1 1 1 1 1 1 1 0.90471 1 21q loss 116 (27%) 308 0.75029 1 0.92264 1 0.42824 1 0.50817 1 0.016741 1 0.12841 1 0.91315 1 0.022831 1 1 1 0.7802 1 0.013089 1 22q loss 137 (32%) 287 0.23467 1 0.88804 1 0.0019149 1 0.54385 1 0.00020639 0.178 0.0086089 1 1 1 0.0018746 1 1 1 0.42208 1 0.013685 1 xq loss 46 (11%) 378 0.82358 1 0.3735 1 0.29592 1 0.60405 1 0.051517 1 0.12453 1 0.53173 1 0.8176 1 1 1 0.52023 1 0.1889 1