Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p	121 (28%)	306	0.014392	1	0.022796	1	2.9602e-13	1.35e-10	0.0023377	0.688	0.033546	1	0.11246	1	6.9958e-05	0.0245	5.0176e-08	2.09e-05	0.57145	1	0.046808	1	0.0030801	0.878	0.025016	1
1q	127 (30%)	300	0.47936	1	0.30836	1	1.2654e-08	5.34e-06	0.033066	1	0.096905	1	0.025181	1	0.0031866	0.902	2.335e-05	0.00857	0.72568	1	0.093537	1	6.7256e-05	0.0236	0.20199	1
2p	80 (19%)	347	0.037005	1	0.081493	1	2.8766e-05	0.0104	0.017038	1	0.061831	1	0.3014	1	0.0053106	1	0.011258	1	0.59219	1	0.047385	1	0.14856	1	0.0073747	1
2q	77 (18%)	350	0.10954	1	0.070471	1	2.8862e-05	0.0104	0.021995	1	0.19976	1	0.61327	1	0.020694	1	0.035794	1	0.74487	1	0.12548	1	0.2819	1	0.24852	1
3p	92 (22%)	335	0.1933	1	0.034748	1	1.6274e-08	6.85e-06	0.098211	1	0.19875	1	0.079443	1	0.00063593	0.2	0.0062343	1	0.66313	1	0.19487	1	0.0035459	0.996	0.14067	1
3q	92 (22%)	335	0.090737	1	0.024181	1	3.1124e-09	1.34e-06	0.091019	1	0.15397	1	0.39752	1	0.00015058	0.0506	0.0027909	0.801	0.23858	1	0.25811	1	0.0050796	1	0.27558	1
4p	136 (32%)	291	2.8219e-05	0.0102	0.0039393	1	3.5676e-17	1.65e-14	9.0768e-05	0.0313	0.056557	1	0.09092	1	7.1749e-07	0.000287	9.1898e-08	3.8e-05	0.59488	1	0.046802	1	6.524e-06	0.00248	0.65033	1
4q	130 (30%)	297	4.5068e-06	0.00174	0.00071676	0.221	6.2564e-18	2.91e-15	1.5023e-05	0.00553	0.0093784	1	0.10156	1	3.4148e-05	0.0123	4.2741e-07	0.000173	0.20026	1	0.0022958	0.68	7.6065e-06	0.00288	0.31746	1
5p	117 (27%)	310	0.29474	1	0.17682	1	2.3152e-06	0.00091	0.49002	1	0.17389	1	0.77436	1	0.035514	1	1.2421e-05	0.00463	0.65611	1	0.3249	1	0.012543	1	0.67515	1
5q	113 (26%)	314	0.34796	1	0.2536	1	3.8453e-09	1.64e-06	0.1319	1	0.068963	1	0.23062	1	0.00059677	0.189	1.5722e-07	6.41e-05	0.8641	1	0.2957	1	0.0046962	1	0.86243	1
6p	112 (26%)	315	0.10773	1	0.00023166	0.0769	7.1501e-07	0.000287	0.021655	1	0.11832	1	0.457	1	0.0069009	1	0.00049564	0.159	0.69552	1	0.02765	1	0.00010741	0.0368	0.8132	1
6q	116 (27%)	311	0.10188	1	0.0023338	0.688	3.2356e-05	0.0116	0.061357	1	0.39338	1	0.18061	1	0.14117	1	0.02658	1	0.79715	1	0.061357	1	0.00085317	0.262	0.81676	1
7p	234 (55%)	193	0.0062031	1	0.0010711	0.326	1.943e-15	8.94e-13	0.00079771	0.246	0.00046225	0.149	0.015886	1	3.7535e-09	1.61e-06	4.4518e-09	1.9e-06	0.59927	1	0.0066851	1	4.458e-06	0.00172	0.96782	1
7q	214 (50%)	213	0.0040723	1	0.003122	0.887	8.5402e-11	3.74e-08	0.0073573	1	0.0051911	1	0.016188	1	1.0684e-07	4.39e-05	4.0189e-08	1.68e-05	0.47097	1	0.0025364	0.736	1.1326e-05	0.00424	0.88961	1
8p	256 (60%)	171	0.089075	1	0.013237	1	1.5546e-24	7.37e-22	0.00054595	0.174	0.00031935	0.104	4.3248e-05	0.0154	8.4031e-08	3.48e-05	2.2571e-06	0.000889	0.31276	1	0.1672	1	1.3861e-05	0.00513	0.16509	1
8q	235 (55%)	192	0.76581	1	0.07129	1	1.8094e-19	8.47e-17	0.0048947	1	0.020377	1	0.00094085	0.288	0.0014023	0.422	4.8882e-05	0.0174	0.9506	1	0.26297	1	0.0072839	1	0.026036	1
9p	123 (29%)	304	0.14892	1	0.022772	1	1.7924e-07	7.3e-05	0.022123	1	0.0035472	0.996	0.30372	1	0.00064215	0.2	0.00049314	0.159	0.34284	1	0.35496	1	0.012655	1	0.77554	1
9q	114 (27%)	313	0.34326	1	0.11287	1	4.8515e-06	0.00186	0.027843	1	0.0041113	1	0.47137	1	0.0023839	0.698	0.005527	1	0.23032	1	0.43055	1	0.01549	1	0.48999	1
10p	96 (22%)	331	0.0073266	1	0.057807	1	7.5389e-10	3.25e-07	0.021655	1	0.059549	1	0.023309	1	2.9878e-06	0.00117	4.4414e-06	0.00172	0.18389	1	0.00095378	0.291	2.0804e-06	0.000822	0.39875	1
10q	86 (20%)	341	0.003701	1	0.020332	1	8.4293e-11	3.7e-08	0.051637	1	0.078935	1	0.10048	1	2.735e-05	0.00996	5.3421e-05	0.0189	0.47072	1	0.013115	1	2.6718e-06	0.00104	0.63932	1
11p	99 (23%)	328	8.994e-05	0.0311	2.6921e-05	0.00983	3.2218e-13	1.47e-10	5.8166e-07	0.000234	0.12656	1	0.10701	1	3.5355e-05	0.0127	8.5573e-06	0.00322	0.69079	1	0.025993	1	4.1343e-06	0.0016	0.16919	1
11q	107 (25%)	320	3.1444e-06	0.00122	7.4696e-07	0.000298	8.1958e-15	3.75e-12	1.3199e-07	5.41e-05	0.093938	1	0.2182	1	1.7625e-06	7e-04	2.4311e-06	0.000953	0.83957	1	0.0050747	1	2.0563e-07	8.35e-05	0.27254	1
12p	131 (31%)	296	0.98528	1	0.20456	1	0.14208	1	0.80954	1	0.23939	1	0.66132	1	0.17718	1	0.10908	1	0.35896	1	0.26769	1	0.59868	1	0.55854	1
12q	127 (30%)	300	0.87484	1	0.5212	1	0.26491	1	0.75934	1	0.19885	1	0.61996	1	0.12337	1	0.10327	1	0.2148	1	0.21912	1	0.55785	1	0.12086	1
13q	257 (60%)	170	0.00013837	0.0469	0.00012393	0.0421	2.1576e-29	1.03e-26	0.00027975	0.0926	0.005939	1	0.0083353	1	1.5681e-10	6.84e-08	3.2949e-11	1.46e-08	0.59973	1	0.016132	1	1.3256e-07	5.42e-05	0.79472	1
14q	162 (38%)	265	0.00022473	0.0748	0.00014079	0.0476	2.7667e-25	1.31e-22	8.2919e-06	0.00313	0.0050185	1	0.10689	1	4.1998e-11	1.86e-08	2.2981e-10	1e-07	0.47783	1	0.00044089	0.143	1.8074e-06	0.000716	0.12629	1
15q	156 (37%)	271	0.0030501	0.872	0.0036101	1	2.8193e-19	1.32e-16	0.0025112	0.731	0.0026281	0.757	0.036943	1	5.7374e-09	2.44e-06	7.5139e-08	3.12e-05	0.93794	1	4.2366e-05	0.0151	1.3787e-05	0.00512	0.28022	1
16p	129 (30%)	298	5.1127e-06	0.00195	1.3684e-05	0.00509	9.7649e-18	4.53e-15	0.028219	1	0.044928	1	0.19296	1	0.00065309	0.203	8.4848e-05	0.0295	0.69453	1	0.0017631	0.525	0.002095	0.622	0.53057	1
16q	124 (29%)	303	4.5353e-06	0.00174	2.4516e-05	0.00897	2.6717e-17	1.24e-14	0.089095	1	0.036781	1	0.25288	1	0.00067125	0.208	0.00012345	0.0421	0.92937	1	0.0011128	0.337	0.00030131	0.0994	0.5642	1
17p	247 (58%)	180	5.2818e-08	2.2e-05	9.7091e-08	4e-05	2.5892e-33	1.24e-30	9.3794e-12	4.17e-09	0.003323	0.937	8.5911e-05	0.0298	1.6977e-14	7.76e-12	1.3339e-16	6.15e-14	0.44968	1	0.015746	1	5.5897e-11	2.46e-08	0.054867	1
17q	136 (32%)	291	0.0055591	1	0.10063	1	1.6084e-12	7.25e-10	0.00062664	0.197	0.14456	1	0.02646	1	1.9926e-08	8.37e-06	5.4762e-07	0.000221	0.31904	1	0.12368	1	0.00044928	0.146	0.045008	1
18p	259 (61%)	168	3.6399e-10	1.58e-07	1.1032e-08	4.67e-06	1.446e-37	6.93e-35	2.3449e-12	1.05e-09	0.0006039	0.191	0.00056076	0.178	1.2651e-19	5.93e-17	3.4737e-13	1.58e-10	0.63315	1	0.085486	1	1.6766e-12	7.54e-10	0.059431	1
18q	266 (62%)	161	3.1164e-10	1.35e-07	2.4468e-09	1.05e-06	4.0966e-37	1.96e-34	9.1315e-12	4.07e-09	0.0080889	1	0.0017344	0.519	5.3452e-21	2.52e-18	4.659e-15	2.14e-12	0.45005	1	0.060656	1	4.3308e-11	1.91e-08	0.24069	1
19p	105 (25%)	322	0.32418	1	0.025659	1	2.1264e-07	8.61e-05	0.10001	1	0.10545	1	0.10722	1	0.00021929	0.0735	0.00014573	0.0491	0.50947	1	0.030007	1	0.0084137	1	0.66281	1
19q	108 (25%)	319	0.10603	1	0.025784	1	0.00010249	0.0353	0.15598	1	0.035598	1	0.027967	1	0.0053251	1	0.0012333	0.372	0.7105	1	0.037539	1	0.052499	1	0.51105	1
20p	272 (64%)	155	9.0093e-06	0.00338	6.332e-09	2.68e-06	7.5546e-22	3.57e-19	1.5076e-06	6e-04	0.017553	1	0.037556	1	4.2429e-13	1.92e-10	7.315e-10	3.16e-07	0.75146	1	0.00030894	0.102	7.657e-06	0.00289	0.71917	1
20q	308 (72%)	119	1.0019e-10	4.38e-08	4.1026e-12	1.83e-09	8.0552e-38	3.87e-35	3.3565e-12	1.5e-09	0.0014245	0.427	5.0484e-05	0.0179	1.4162e-23	6.7e-21	4.2886e-20	2.02e-17	0.90281	1	5.9133e-05	0.0208	1.4328e-12	6.48e-10	0.12149	1
21q	138 (32%)	289	0.0041691	1	0.0024801	0.724	4.9419e-11	2.18e-08	0.10783	1	0.14567	1	0.18104	1	0.002589	0.748	0.00063995	0.2	0.31827	1	0.12574	1	0.00042401	0.138	0.55616	1
22q	148 (35%)	279	0.00022275	0.0744	0.0003157	0.104	8.1738e-19	3.81e-16	8.4622e-05	0.0295	0.10105	1	0.57978	1	1.9964e-08	8.37e-06	1.4733e-05	0.00544	0.16597	1	0.00049506	0.159	5.6629e-06	0.00216	0.37471	1
xq	114 (27%)	313	0.0068228	1	0.062624	1	0.00011209	0.0383	0.21572	1	0.017112	1	0.0079059	1	0.10213	1	0.16719	1	0.021867	1	0.4754	1	0.016702	1	0.074076	1