Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p	176 (30%)	413	0.0097351	1	0.12033	1	5.1062e-11	2.28e-08	0.0034699	1	0.15726	1	0.93394	1	0.020645	1	1.9037e-06	0.000771	0.47502	1	0.27166	1	0.0011752	0.389	0.019348	1
1q	186 (32%)	403	0.23005	1	0.56604	1	1.2899e-08	5.56e-06	0.063628	1	0.18254	1	0.66582	1	0.022099	1	9.6262e-05	0.0358	0.48773	1	0.93119	1	0.00056582	0.196	0.046271	1
2p	131 (22%)	458	0.058672	1	0.03559	1	3.1905e-06	0.00129	0.00068371	0.235	0.38236	1	0.41202	1	2.7281e-05	0.0105	0.0055718	1	0.060997	1	0.096687	1	0.1723	1	0.0036372	1
2q	125 (21%)	464	0.068639	1	0.032668	1	4.7507e-07	0.000197	0.00036903	0.131	0.61489	1	0.70427	1	0.0011458	0.38	0.0028308	0.886	0.13619	1	0.25219	1	0.24723	1	0.058203	1
3p	133 (23%)	456	0.41807	1	0.53673	1	6.3546e-05	0.024	0.60053	1	0.51315	1	0.31354	1	0.40486	1	0.032715	1	0.125	1	0.08138	1	0.0017033	0.552	0.18162	1
3q	136 (23%)	453	0.062128	1	0.069506	1	3.8609e-06	0.00155	0.25322	1	0.24406	1	0.4851	1	0.04362	1	0.0047812	1	0.025511	1	0.068485	1	0.00081357	0.276	0.27932	1
4p	202 (34%)	387	0.024924	1	0.058971	1	2.0488e-15	9.42e-13	0.00010613	0.0393	0.35041	1	0.50694	1	1.3981e-05	0.00545	5.4459e-06	0.00217	0.042203	1	0.09184	1	1.7817e-05	0.00691	0.096785	1
4q	197 (33%)	392	0.010289	1	0.050846	1	2.104e-17	9.85e-15	3.64e-06	0.00147	0.50523	1	0.26084	1	3.4004e-05	0.0129	4.9827e-06	0.00199	0.14582	1	0.028962	1	0.00013893	0.0507	0.015232	1
5p	178 (30%)	411	0.28232	1	0.76167	1	2.7919e-07	0.000117	0.16285	1	0.41046	1	0.50043	1	0.021436	1	0.00017892	0.0651	0.92033	1	0.88448	1	0.00097494	0.326	0.06616	1
5q	175 (30%)	414	0.076628	1	0.2542	1	1.6978e-09	7.49e-07	0.063749	1	0.1065	1	0.51687	1	0.0060228	1	4.387e-05	0.0166	0.92307	1	0.72132	1	6.661e-05	0.025	0.14957	1
6p	164 (28%)	425	0.020632	1	0.0085381	1	6.9649e-07	0.000286	0.19488	1	0.15353	1	0.98056	1	0.064486	1	0.0015648	0.51	0.85589	1	0.81692	1	0.00070438	0.242	0.27249	1
6q	173 (29%)	416	0.049116	1	0.041584	1	8.5654e-06	0.00337	0.12093	1	0.31958	1	0.92839	1	0.23662	1	0.073209	1	0.8438	1	0.69124	1	0.010321	1	0.7306	1
7p	336 (57%)	253	0.00088129	0.296	0.00054907	0.193	2.7935e-21	1.32e-18	6.4401e-06	0.00256	0.013039	1	0.027497	1	2.8755e-08	1.23e-05	1.8918e-09	8.32e-07	0.0054168	1	0.0075303	1	4.4977e-06	0.0018	0.48349	1
7q	302 (51%)	287	0.00026834	0.0966	0.0023202	0.736	4.5513e-14	2.08e-11	0.00030673	0.11	0.14413	1	0.12112	1	5.7927e-07	0.000239	4.5884e-07	0.000191	0.012013	1	0.073298	1	2.5247e-05	0.00975	0.26059	1
8p	369 (63%)	220	0.0086396	1	0.00085915	0.29	1.7897e-44	8.59e-42	0.00013443	0.0492	0.024825	1	0.077696	1	7.3784e-07	0.000303	1.202e-06	0.000488	0.050695	1	0.10084	1	9.0928e-05	0.034	0.16772	1
8q	334 (57%)	255	0.16992	1	0.017067	1	9.1205e-44	4.37e-41	0.0057701	1	0.13162	1	0.078935	1	7.7966e-06	0.00308	2.6476e-07	0.000111	0.49958	1	0.25747	1	0.017557	1	0.37093	1
9p	187 (32%)	402	0.35411	1	0.62921	1	0.00032955	0.117	0.0084634	1	0.22036	1	0.91331	1	0.018405	1	0.00093129	0.312	0.34402	1	0.038352	1	0.00074357	0.254	0.39523	1
9q	168 (29%)	421	0.50002	1	0.59356	1	0.0012524	0.411	0.0075878	1	0.11527	1	0.64404	1	0.031989	1	0.020476	1	0.21745	1	0.16833	1	0.0038652	1	0.29875	1
10p	140 (24%)	449	0.35846	1	0.45244	1	4.7995e-07	0.000199	0.10003	1	0.35766	1	0.15802	1	0.00028095	0.101	0.00018449	0.067	0.079495	1	0.02932	1	0.00031105	0.111	0.001178	0.389
10q	128 (22%)	461	0.050472	1	0.36405	1	5.9344e-11	2.65e-08	0.099758	1	0.10317	1	0.67053	1	0.00055325	0.194	0.00010942	0.0404	0.46002	1	0.26723	1	0.00012313	0.0453	0.00080365	0.273
11p	153 (26%)	436	0.10301	1	0.33954	1	1.0001e-08	4.33e-06	6.952e-06	0.00275	0.26033	1	0.77981	1	0.0054201	1	3.842e-05	0.0146	0.56762	1	0.42547	1	0.00031105	0.111	0.56119	1
11q	162 (28%)	427	0.02098	1	0.12301	1	1.6297e-09	7.2e-07	8.8105e-07	0.000359	0.31903	1	0.82883	1	0.0027387	0.86	9.466e-05	0.0353	0.41788	1	0.32577	1	3.2586e-05	0.0124	0.17034	1
12p	191 (32%)	398	0.94419	1	0.93711	1	0.12066	1	0.34419	1	0.52195	1	0.9699	1	0.74549	1	0.22723	1	0.75285	1	0.57121	1	0.83583	1	0.94969	1
12q	175 (30%)	414	0.8603	1	0.90828	1	0.081824	1	0.48456	1	0.34662	1	0.98385	1	0.77532	1	0.35493	1	0.75517	1	0.8221	1	0.95767	1	0.68356	1
13q	374 (63%)	215	9.0855e-06	0.00356	0.0019659	0.635	1.5875e-34	7.56e-32	2.229e-09	9.79e-07	0.18822	1	0.19583	1	4.8959e-08	2.08e-05	8.6264e-09	3.74e-06	0.0010842	0.361	0.28849	1	5.9427e-10	2.64e-07	0.0046325	1
14q	235 (40%)	354	0.0022107	0.707	0.0049097	1	3.2555e-25	1.54e-22	2.0619e-05	0.00798	0.0056413	1	0.17373	1	4.4966e-11	2.01e-08	3.0374e-05	0.0116	0.081504	1	0.76852	1	2.8172e-08	1.21e-05	0.11434	1
15q	231 (39%)	358	0.00055602	0.194	0.0036505	1	8.2865e-18	3.89e-15	0.0039181	1	0.079807	1	0.51427	1	1.6964e-05	0.0066	3.6847e-07	0.000154	0.80674	1	0.80466	1	4.7498e-06	0.0019	0.10325	1
16p	177 (30%)	412	0.0024066	0.76	0.0043147	1	6.1799e-16	2.85e-13	0.023511	1	0.031166	1	0.35796	1	0.00021244	0.0767	6.9379e-05	0.026	0.47114	1	0.8344	1	0.020904	1	0.049367	1
16q	177 (30%)	412	0.0048238	1	0.0022586	0.718	2.1211e-17	9.91e-15	0.080662	1	0.041871	1	0.43026	1	0.00057713	0.2	0.00010571	0.0392	0.59638	1	0.73914	1	0.0050344	1	0.068209	1
17p	358 (61%)	231	8.2089e-07	0.000336	8.0579e-06	0.00317	6.2908e-27	2.98e-24	7.3037e-09	3.18e-06	0.083437	1	0.056014	1	3.092e-09	1.35e-06	5.0825e-09	2.22e-06	0.0021963	0.705	0.01263	1	3.3231e-08	1.42e-05	0.068299	1
17q	191 (32%)	398	0.045178	1	0.32916	1	1.3179e-07	5.55e-05	0.0022407	0.715	0.72777	1	0.27278	1	2.9094e-05	0.0112	3.2578e-05	0.0124	0.010697	1	0.27841	1	0.02825	1	0.052862	1
18p	392 (67%)	197	1.014e-10	4.51e-08	1.7888e-08	7.67e-06	2.0617e-37	9.83e-35	2.9657e-16	1.38e-13	0.021497	1	0.020929	1	1.643e-18	7.74e-16	1.5752e-13	7.14e-11	0.0062791	1	0.13114	1	1.059e-13	4.82e-11	0.0021049	0.678
18q	407 (69%)	182	1.2019e-09	5.32e-07	4.1296e-08	1.76e-05	1.273e-38	6.08e-36	2.7866e-15	1.28e-12	0.084541	1	0.087135	1	6.0628e-16	2.8e-13	1.1871e-13	5.39e-11	0.0013603	0.445	0.082172	1	3.3691e-11	1.51e-08	0.0030835	0.959
19p	160 (27%)	429	0.14832	1	0.13389	1	2.1986e-11	9.89e-09	0.012263	1	0.11877	1	0.12769	1	0.0076406	1	0.00056291	0.196	0.12503	1	0.078084	1	0.028069	1	0.068623	1
19q	160 (27%)	429	0.073327	1	0.090235	1	1.1577e-07	4.89e-05	0.041841	1	0.065437	1	0.26235	1	0.057024	1	0.0088873	1	0.42602	1	0.16783	1	0.034115	1	0.050337	1
20p	399 (68%)	190	2.2695e-07	9.53e-05	3.8327e-09	1.67e-06	9.4566e-17	4.41e-14	1.3494e-08	5.8e-06	0.0082319	1	0.10741	1	1.2422e-08	5.37e-06	4.8647e-07	0.000201	0.45967	1	0.75741	1	9.9622e-06	0.0039	0.16286	1
20q	451 (77%)	138	3.2984e-14	1.51e-11	5.1078e-13	2.31e-10	6.9784e-34	3.31e-31	1.0175e-16	4.73e-14	0.021223	1	0.0056804	1	1.4532e-17	6.82e-15	6.2419e-14	2.85e-11	0.025872	1	0.17276	1	6.0545e-12	2.73e-09	0.00070503	0.242
21q	215 (37%)	374	0.006091	1	0.09523	1	8.2733e-08	3.5e-05	0.062212	1	0.45516	1	0.091256	1	0.00039407	0.139	0.00066158	0.228	0.051418	1	0.030967	1	0.00044624	0.157	0.11161	1
22q	215 (37%)	374	0.00021029	0.0761	0.000826	0.279	3.7044e-16	1.72e-13	0.0067466	1	0.67368	1	0.71404	1	0.0029451	0.919	0.0011986	0.394	0.9451	1	0.1608	1	0.00012926	0.0474	0.16873	1
xq	172 (29%)	417	0.46103	1	0.75984	1	1.1908e-06	0.000485	0.01296	1	0.0016263	0.529	0.0026622	0.839	0.31442	1	0.064546	1	0.038411	1	0.52177	1	0.5671	1	0.20868	1