Clinical Features	METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1q gain	4 (14%)	24	1	1	1	1	0.60147	1
3p gain	5 (18%)	23	0.82271	1	1	1	1	1
3q gain	6 (21%)	22	0.69167	1	1	1	0.6345	1
6p gain	3 (11%)	25	1	1	1	1	1	1
7p gain	8 (29%)	20	0.28675	1	1	1	0.40043	1
7q gain	7 (25%)	21	0.61576	1	0.67029	1	0.20746	1
10p gain	3 (11%)	25	1	1	0.58333	1	1	1
11p gain	4 (14%)	24	0.4778	1	0.6	1	0.2652	1
11q gain	8 (29%)	20	0.54743	1	0.68599	1	0.19368	1
12p gain	3 (11%)	25	1	1	0.58333	1	0.53297	1
12q gain	4 (14%)	24	0.4778	1	1	1	0.2652	1
16p gain	4 (14%)	24	0.4778	1	0.6	1	1	1
16q gain	4 (14%)	24	0.09177	1	0.6	1	1	1
18p gain	5 (18%)	23	0.82271	1	1	1	1	1
18q gain	5 (18%)	23	0.82271	1	1	1	1	1
21q gain	6 (21%)	22	1	1	1	1	1	1
xq gain	3 (11%)	25	0.17949	1	1	1	0.53297	1
1p loss	3 (11%)	25	1	1	1	1	1	1
6q loss	3 (11%)	25	1	1	1	1	0.53297	1
8p loss	4 (14%)	24	1	1	0.31111	1	0.11575	1
15q loss	5 (18%)	23	0.31233	1	0.63889	1	0.31502	1
16q loss	4 (14%)	24	1	1	1	1	0.60147	1
17p loss	3 (11%)	25	1	1	1	1	1	1
xq loss	3 (11%)	25	0.17949	1	0.58333	1	0.28388	1