Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		MIR_CNMF		MIR_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p	98 (18%)	462	0.40502	1	0.33602	1	0.46489	1	0.13758	1	1.1361e-10	4.36e-08	0.38719	1	0.49754	1	1	1	0.66504	1	0.82462	1
1q	103 (18%)	457	0.1169	1	0.36793	1	0.2789	1	0.23834	1	1.1136e-13	4.35e-11	0.24745	1	0.68182	1	0.86582	1	1	1	0.85974	1
2p	66 (12%)	494	0.033608	1	0.15466	1	0.30883	1	0.93708	1	2.3502e-09	8.88e-07	0.0024551	0.761	0.88394	1	0.76031	1	0.59199	1	0.7341	1
2q	65 (12%)	495	0.056327	1	0.23225	1	0.25029	1	0.92923	1	5.8596e-09	2.2e-06	0.0024551	0.761	0.98384	1	0.90388	1	0.59199	1	0.7341	1
3p	96 (17%)	464	0.027024	1	0.11306	1	0.96124	1	0.29719	1	2.0645e-12	8.01e-10	0.023481	1	0.23194	1	0.3004	1	0.58172	1	0.33652	1
3q	96 (17%)	464	0.0090918	1	0.078992	1	0.8095	1	0.058176	1	7.8343e-13	3.05e-10	0.021914	1	0.48388	1	0.3004	1	0.4793	1	0.36493	1
4p	88 (16%)	472	0.02313	1	0.032579	1	0.20221	1	0.17175	1	3.0047e-05	0.0103	0.86244	1	0.70151	1	0.54732	1	0.63796	1	0.40805	1
4q	87 (16%)	473	0.00062839	0.202	0.0026921	0.829	0.13006	1	0.068115	1	2.6918e-06	0.000956	0.043744	1	0.97552	1	0.47993	1	0.17263	1	0.30594	1
5p	90 (16%)	470	0.00024154	0.0797	0.13852	1	0.43219	1	0.38036	1	6.0748e-09	2.27e-06	0.049219	1	0.86694	1	0.90388	1	0.081903	1	0.57221	1
5q	83 (15%)	477	0.0018735	0.594	0.15685	1	0.39175	1	0.71314	1	2.6175e-08	9.68e-06	0.021605	1	0.85782	1	0.59077	1	0.034983	1	0.76517	1
6p	107 (19%)	453	0.12075	1	0.09043	1	0.91721	1	0.98691	1	7.3367e-14	2.88e-11	0.33283	1	0.84907	1	0.070371	1	0.84693	1	0.26877	1
6q	143 (26%)	417	0.17706	1	0.27297	1	0.77568	1	0.53416	1	3.7137e-12	1.43e-09	0.87687	1	0.90306	1	0.12794	1	0.67709	1	0.59239	1
7p	463 (83%)	97	6.7573e-05	0.0228	1.6047e-05	0.00555	0.0014121	0.452	3.2499e-07	0.000118	3.8469e-09	1.45e-06	0.0073146	1	0.0022338	0.697	0.2944	1	0.016168	1	0.0017742	0.564
7q	466 (83%)	94	1.2922e-05	0.0045	0.0019579	0.617	0.0032174	0.985	0.0017535	0.559	1.4301e-07	5.22e-05	0.0024016	0.747	0.10985	1	0.17849	1	0.051264	1	0.0079852	1
8p	109 (19%)	451	0.023218	1	0.024689	1	0.54303	1	0.027438	1	3.0574e-10	1.17e-07	0.094592	1	0.64175	1	0.2984	1	0.66893	1	0.95754	1
8q	100 (18%)	460	0.0020907	0.656	0.007966	1	0.24088	1	0.031809	1	4.6568e-10	1.77e-07	0.030545	1	0.71011	1	0.18146	1	0.66893	1	0.95754	1
9p	241 (43%)	319	0.6187	1	0.60207	1	0.48709	1	0.33121	1	0.21808	1	0.85265	1	0.75961	1	0.2046	1	0.1054	1	0.21585	1
9q	158 (28%)	402	0.97442	1	0.73751	1	0.094672	1	0.87874	1	6.6217e-05	0.0224	0.058328	1	0.98982	1	0.32375	1	0.47976	1	0.19741	1
10p	479 (86%)	81	3.5333e-05	0.0121	0.0021221	0.664	0.074356	1	0.00012919	0.0431	8.1368e-18	3.23e-15	0.074508	1	0.014772	1	0.073842	1	0.24973	1	0.10987	1
10q	481 (86%)	79	1.0956e-07	4.02e-05	1.8174e-06	0.000652	0.0091716	1	0.00018365	0.0612	2.7677e-23	1.1e-20	0.036064	1	0.00050046	0.162	0.04481	1	0.17476	1	0.16075	1
11p	114 (20%)	446	8.9018e-07	0.000322	5.4531e-05	0.0186	0.65801	1	0.0080758	1	2.8554e-16	1.13e-13	0.15855	1	0.83347	1	0.045643	1	0.25205	1	0.32979	1
11q	105 (19%)	455	3.0827e-06	0.00109	0.00081628	0.262	0.87467	1	0.070248	1	8.0033e-15	3.15e-12	0.65037	1	0.94031	1	0.12994	1	0.45008	1	0.39304	1
12p	117 (21%)	443	0.029405	1	0.18533	1	0.45674	1	0.68427	1	7.3978e-09	2.74e-06	0.2795	1	0.0843	1	0.11089	1	0.081299	1	0.32724	1
12q	105 (19%)	455	0.16663	1	0.35781	1	0.29204	1	0.51952	1	5.7956e-09	2.18e-06	0.21942	1	0.12366	1	0.24388	1	0.2537	1	0.49476	1
13q	191 (34%)	369	6.337e-06	0.00222	0.00010195	0.0342	0.70147	1	0.14696	1	1.0805e-24	4.31e-22	0.00036173	0.119	0.67747	1	0.060038	1	0.13009	1	0.44624	1
14q	163 (29%)	397	6.1708e-06	0.00217	0.0018988	0.6	0.53857	1	0.63218	1	3.8432e-28	1.54e-25	0.012809	1	0.89049	1	0.32548	1	0.21759	1	0.0066024	1
15q	123 (22%)	437	1.4686e-06	0.000529	1.9687e-06	0.000705	0.051159	1	0.0096937	1	7.0761e-13	2.76e-10	1.5357e-05	0.00533	0.13989	1	0.012854	1	0.060989	1	0.19625	1
16p	99 (18%)	461	0.0028979	0.89	0.074526	1	0.63025	1	0.64717	1	6.0088e-08	2.21e-05	0.4214	1	0.19866	1	0.32693	1	0.64484	1	0.5985	1
16q	117 (21%)	443	0.00051795	0.167	0.15725	1	0.86654	1	0.42211	1	1.2458e-06	0.00045	0.81499	1	0.079113	1	0.35627	1	0.84693	1	0.50079	1
17p	108 (19%)	452	0.00046254	0.15	0.21323	1	0.63731	1	0.12562	1	3.2619e-15	1.29e-12	0.01687	1	0.12147	1	0.080531	1	0.8695	1	0.69554	1
17q	98 (18%)	462	0.0068323	1	0.86484	1	0.65539	1	0.64271	1	7.2477e-12	2.79e-09	0.049219	1	0.46774	1	0.45461	1	0.47477	1	0.50839	1
18p	126 (22%)	434	3.8941e-08	1.44e-05	8.3945e-06	0.00293	0.027933	1	0.24252	1	2.6399e-14	1.04e-11	0.13813	1	0.059019	1	0.0052134	1	0.11452	1	0.7338	1
18q	118 (21%)	442	2.6578e-06	0.000946	8.7516e-05	0.0294	0.30611	1	0.18397	1	2.632e-12	1.02e-09	0.24293	1	0.052813	1	0.0041796	1	0.40638	1	1	1
19p	246 (44%)	314	1.3521e-07	4.95e-05	0.00038521	0.126	0.017283	1	0.0053782	1	2.5776e-10	9.87e-08	0.15173	1	0.0072376	1	5.6082e-05	0.0191	0.39683	1	0.051897	1
19q	227 (41%)	333	4.99e-07	0.000181	2.4793e-05	0.00855	0.16343	1	0.07938	1	1.8875e-09	7.15e-07	0.20093	1	0.020835	1	0.00037264	0.122	0.16889	1	0.081403	1
20p	235 (42%)	325	2.6535e-05	0.00913	2.3713e-06	0.000847	0.069844	1	0.00021634	0.0716	0.00036123	0.119	0.11259	1	0.12784	1	0.021016	1	0.91669	1	0.0050927	1
20q	231 (41%)	329	7.1835e-06	0.00251	2.8425e-06	0.00101	0.010217	1	6.2387e-05	0.0211	0.00018661	0.062	0.034934	1	0.088626	1	0.017901	1	0.96738	1	0.0037895	1
21q	102 (18%)	458	0.055733	1	0.11921	1	0.66991	1	0.19772	1	6.547e-09	2.44e-06	0.35674	1	0.53968	1	0.72785	1	0.02951	1	0.17752	1
22q	207 (37%)	353	0.035116	1	0.48526	1	0.26466	1	0.37592	1	3.7573e-10	1.43e-07	0.23822	1	0.71032	1	0.18322	1	0.47544	1	0.27603	1
xq	118 (21%)	442	0.0051054	1	0.25589	1	0.28253	1	0.3699	1	6.047e-09	2.26e-06	0.16942	1	0.96056	1	0.73276	1	0.61159	1	0.80039	1