Clinical Features MRNA_CNMF MRNA_CHIERARCHICAL CN_CNMF METHLYATION_CNMF RPPA_CNMF RPPA_CHIERARCHICAL MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q 1p 80 (16%) 424 0.014467 1 0.0064083 1 3.8947e-14 1.78e-11 0.12485 1 0.0087821 1 0.0081425 1 0.051476 1 0.001416 0.385 0.00092925 0.269 1.0801e-09 4.48e-07 0.0093112 1 6.9174e-05 0.0235 1q 87 (17%) 417 0.083675 1 0.12591 1 9.8044e-16 4.55e-13 0.084605 1 0.034921 1 0.0093947 1 0.019435 1 0.0093669 1 4.079e-05 0.0143 1.3224e-06 0.000513 0.018376 1 0.016574 1 2p 89 (18%) 415 0.032608 1 0.051338 1 4.6532e-10 1.95e-07 0.36855 1 0.00017781 0.0573 0.054912 1 0.47251 1 0.37804 1 0.060002 1 0.00036855 0.116 0.0053068 1 0.23061 1 2q 90 (18%) 414 0.10641 1 0.16687 1 4.861e-08 1.95e-05 0.41268 1 0.00032556 0.103 0.079168 1 0.64976 1 0.60418 1 0.093883 1 0.0013333 0.367 0.016853 1 0.16134 1 3p 382 (76%) 122 0.0093277 1 0.0010838 0.306 8.4253e-22 3.99e-19 0.038229 1 0.11565 1 0.059336 1 5.9568e-06 0.00225 1.161e-08 4.73e-06 0.30203 1 0.037235 1 0.028045 1 0.0043446 1 3q 158 (31%) 346 0.23642 1 0.25079 1 5.9805e-10 2.49e-07 0.010394 1 0.034793 1 0.096715 1 1.2192e-05 0.0045 8.436e-06 0.00318 1.5891e-05 0.00578 0.02936 1 0.00059799 0.182 0.0965 1 4p 84 (17%) 420 0.82006 1 0.81885 1 2.405e-10 1.01e-07 0.00065788 0.198 0.025051 1 0.077298 1 0.014883 1 0.090768 1 0.095747 1 0.049326 1 0.044687 1 0.45336 1 4q 78 (15%) 426 0.54414 1 0.55445 1 8.3488e-13 3.69e-10 0.00091457 0.267 0.0092434 1 0.043868 1 0.0021763 0.555 0.010615 1 0.016659 1 0.051525 1 0.016281 1 0.23451 1 5p 192 (38%) 312 0.92366 1 0.87781 1 3.7529e-05 0.0132 0.095714 1 0.067664 1 0.096748 1 0.036025 1 0.001862 0.486 0.076473 1 0.921 1 0.17211 1 0.94023 1 5q 205 (41%) 299 0.39535 1 0.29112 1 0.0042066 1 0.24062 1 0.27105 1 0.08636 1 0.26436 1 0.015658 1 0.63775 1 0.91802 1 0.58726 1 0.86836 1 6p 110 (22%) 394 0.0052592 1 0.0015878 0.427 5.2828e-18 2.48e-15 0.001568 0.423 1.0731e-06 0.000417 0.00094636 0.273 1.7786e-06 0.000688 3.4679e-06 0.00132 9.1505e-10 3.81e-07 2.3763e-05 0.00853 7.7965e-07 0.000306 0.0032897 0.809 6q 135 (27%) 369 0.019357 1 0.010688 1 1.0051e-17 4.69e-15 0.047589 1 2.1039e-05 0.00762 0.0091737 1 0.0010058 0.288 0.0030589 0.76 4.4146e-07 0.000175 0.00041794 0.131 5.8811e-05 0.0202 0.029353 1 7p 170 (34%) 334 0.41594 1 0.57703 1 7.135e-14 3.23e-11 0.0045256 1 3.2248e-06 0.00124 0.0018872 0.491 0.00014701 0.0479 0.00089336 0.262 0.002487 0.629 0.090186 1 0.009137 1 0.24382 1 7q 172 (34%) 332 0.41594 1 0.57703 1 2.1069e-13 9.4e-11 0.0072885 1 4.5153e-06 0.00172 0.00061512 0.186 0.00010805 0.0357 0.00059748 0.182 0.0020889 0.537 0.046289 1 0.035828 1 0.16312 1 8p 165 (33%) 339 0.14425 1 0.22445 1 8.9107e-12 3.84e-09 0.0012402 0.344 0.0018333 0.482 0.07634 1 0.00042393 0.132 0.00082592 0.244 1.3556e-05 0.00498 0.040619 1 0.001846 0.484 0.0077992 1 8q 124 (25%) 380 0.1716 1 0.21777 1 4.8345e-15 2.23e-12 9.9245e-05 0.0329 1.1927e-05 0.00441 0.024433 1 1.034e-05 0.00386 8.9922e-05 0.0299 5.149e-06 0.00195 0.025907 1 1.5757e-05 0.00575 6.9582e-05 0.0236 9p 158 (31%) 346 0.003781 0.923 0.00044026 0.136 6.0777e-41 2.91e-38 3.8195e-17 1.78e-14 2.5425e-05 0.00908 0.0017014 0.453 6.2532e-20 2.95e-17 5.4309e-21 2.57e-18 8.5263e-13 3.76e-10 0.00011029 0.0363 3.298e-08 1.33e-05 0.00017456 0.0566 9q 159 (32%) 345 0.0062838 1 0.0008263 0.244 1.4763e-42 7.09e-40 5.7959e-18 2.71e-15 5.3087e-07 0.00021 0.00042877 0.133 6.5142e-22 3.09e-19 7.1604e-23 3.42e-20 1.1468e-15 5.31e-13 3.5969e-05 0.0127 1.4711e-08 5.97e-06 3.4402e-06 0.00131 10p 82 (16%) 422 0.064879 1 0.10028 1 2.0192e-12 8.82e-10 0.038873 1 0.58332 1 0.16102 1 0.0020807 0.537 0.016892 1 0.0028773 0.722 0.00082856 0.244 0.021004 1 0.17263 1 10q 98 (19%) 406 0.14135 1 0.2011 1 4.4456e-12 1.93e-09 0.010216 1 0.96901 1 0.080061 1 0.0063064 1 0.031975 1 0.0082001 1 0.0070027 1 0.021039 1 0.073239 1 11p 48 (10%) 456 0.086026 1 0.12612 1 9.3679e-11 3.98e-08 0.084825 1 0.038661 1 0.1504 1 0.046405 1 0.050658 1 0.078499 1 0.007134 1 0.041919 1 0.037912 1 11q 51 (10%) 453 0.17348 1 0.23862 1 2.8961e-10 1.22e-07 0.10261 1 0.053156 1 0.30523 1 0.043328 1 0.045006 1 0.069917 1 0.014111 1 0.041919 1 0.073974 1 12p 121 (24%) 383 0.012874 1 0.014228 1 1.658e-13 7.44e-11 0.00010137 0.0336 3.8275e-12 1.67e-09 0.0031027 0.766 5.6142e-11 2.4e-08 1.5423e-10 6.52e-08 5.9341e-09 2.43e-06 0.045544 1 6.6506e-07 0.000262 0.0012758 0.352 12q 123 (24%) 381 0.012874 1 0.014228 1 6.1133e-14 2.78e-11 6.022e-05 0.0206 1.8708e-13 8.38e-11 0.0016246 0.435 3.6052e-11 1.55e-08 3.6093e-11 1.55e-08 1.2088e-09 5e-07 0.050005 1 2.5204e-07 1e-04 0.00065406 0.198 13q 91 (18%) 413 0.012921 1 0.021327 1 4.8815e-10 2.04e-07 0.00074083 0.221 5.8481e-05 0.0201 0.047043 1 2.411e-05 0.00863 3.1282e-06 0.0012 1.096e-05 0.00408 0.00030289 0.096 0.04086 1 0.043123 1 14q 227 (45%) 277 4.782e-05 0.0166 4.7242e-05 0.0165 1.1391e-19 5.37e-17 7.432e-09 3.03e-06 3.6381e-13 1.62e-10 1.7916e-07 7.15e-05 5.2727e-18 2.48e-15 1.691e-15 7.81e-13 1.2377e-14 5.67e-12 0.067623 1 0.00030047 0.0955 0.00056827 0.174 15q 61 (12%) 443 0.13335 1 0.14321 1 5.021e-12 2.17e-09 0.03856 1 0.015262 1 0.085498 1 0.0011114 0.312 0.00047187 0.145 0.0071208 1 0.012196 1 0.052956 1 0.36958 1 16p 115 (23%) 389 0.14922 1 0.21595 1 7.5897e-05 0.0257 0.2993 1 0.007851 1 0.037672 1 0.0060149 1 0.00022455 0.0719 0.012854 1 0.19348 1 0.11288 1 0.25333 1 16q 112 (22%) 392 0.28203 1 0.11955 1 2.9902e-06 0.00115 0.088394 1 0.047145 1 0.090726 1 0.0037059 0.908 0.00024415 0.0779 0.0010492 0.299 0.13406 1 0.034065 1 0.097489 1 17p 70 (14%) 434 8.7024e-06 0.00327 3.1362e-05 0.0111 5.4359e-15 2.5e-12 0.14513 1 0.0018021 0.476 0.00033015 0.104 1.0152e-06 0.000396 1.5771e-08 6.39e-06 3.7117e-08 1.5e-05 6.4404e-11 2.74e-08 0.012682 1 0.042813 1 17q 58 (12%) 446 8.3644e-05 0.028 0.00017454 0.0566 1.3204e-10 5.6e-08 0.2409 1 0.13009 1 0.0061421 1 8.2835e-05 0.0278 9.6887e-07 0.00038 1.2788e-05 0.00471 1.9042e-10 8.04e-08 0.018015 1 0.030447 1 18p 116 (23%) 388 0.012874 1 0.037614 1 1.316e-13 5.92e-11 0.00019817 0.0636 1.124e-05 0.00417 0.047109 1 1.8213e-14 8.32e-12 4.3203e-12 1.88e-09 1.8449e-09 7.6e-07 9.7855e-07 0.000383 3.3474e-05 0.0118 0.017269 1 18q 118 (23%) 386 0.013624 1 0.033029 1 1.1879e-13 5.36e-11 0.00045136 0.139 9.4663e-06 0.00354 0.061001 1 8.1466e-14 3.68e-11 6.6627e-12 2.88e-09 2.4348e-09 1e-06 4.9489e-07 0.000196 1.5875e-05 0.00578 0.0053825 1 19p 61 (12%) 443 0.4334 1 0.48625 1 3.7259e-13 1.65e-10 0.00077104 0.229 0.0059354 1 0.0016811 0.449 0.00068222 0.204 0.0013535 0.37 4.7539e-05 0.0165 0.0030521 0.76 0.0015122 0.41 0.35284 1 19q 60 (12%) 444 0.18009 1 0.30233 1 2.748e-13 1.22e-10 0.00091639 0.267 0.0022787 0.579 0.0025389 0.64 0.0010514 0.299 0.0030084 0.752 4.8862e-05 0.0169 0.00096548 0.277 0.001766 0.468 0.47058 1 20p 118 (23%) 386 0.045714 1 0.06749 1 6.4569e-22 3.07e-19 6.5585e-05 0.0224 6.3113e-09 2.58e-06 0.0019978 0.517 9.7771e-15 4.49e-12 8.6774e-13 3.82e-10 1.7037e-12 7.48e-10 3.4047e-05 0.012 1.2871e-07 5.16e-05 0.0011224 0.314 20q 116 (23%) 388 0.023991 1 0.033029 1 5.2551e-24 2.51e-21 5.6154e-05 0.0194 1.75e-09 7.23e-07 0.0013383 0.367 5.1685e-16 2.4e-13 2.0359e-13 9.1e-11 1.7656e-12 7.73e-10 3.0441e-05 0.0108 1.2871e-07 5.16e-05 0.0011224 0.314 21q 105 (21%) 399 0.11564 1 0.16346 1 2.0769e-11 8.93e-09 8.9114e-05 0.0298 0.00012529 0.041 0.0063166 1 0.00015407 0.0501 2.2106e-05 0.00798 0.00011396 0.0374 0.0010827 0.306 0.021342 1 0.059577 1 22q 79 (16%) 425 0.0043224 1 0.00048457 0.149 5.6727e-14 2.58e-11 0.017586 1 0.030553 1 0.15845 1 9.2638e-06 0.00347 1.5169e-05 0.00555 2.3484e-06 0.000906 0.012489 1 0.0006594 0.198 0.14131 1 xq 75 (15%) 429 0.077517 1 0.086788 1 7.6805e-05 0.0259 0.019709 1 0.0012124 0.337 2.2455e-05 0.00808 0.015025 1 0.0071303 1 0.017839 1 0.00093025 0.269 0.015528 1 0.0020967 0.537