Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p	235 (48%)	255	0.011847	1	0.0026309	0.923	2.8447e-16	1.37e-13	9.2642e-12	4.43e-09	0.67619	1	0.10093	1	5.5027e-09	2.6e-06	8.5664e-11	4.07e-08	0.00014865	0.0599	0.00011906	0.0485	0.018713	1	0.0017857	0.643
1q	256 (52%)	234	0.25683	1	0.29682	1	6.061e-10	2.87e-07	5.0997e-08	2.36e-05	0.55284	1	0.13713	1	1.162e-06	0.000523	2.702e-08	1.26e-05	0.0019492	0.692	0.00094656	0.357	0.023726	1	0.0039701	1
2p	239 (49%)	251	0.080678	1	0.13649	1	2.036e-12	9.75e-10	2.7075e-05	0.0115	0.49331	1	0.26156	1	1.2481e-06	0.00056	1.6168e-05	0.00689	5.93e-05	0.0247	0.0089938	1	7.502e-06	0.00326	3.826e-05	0.0161
2q	177 (36%)	313	0.24927	1	0.22327	1	3.3733e-06	0.00149	0.011556	1	0.38288	1	0.13625	1	0.00017975	0.0717	1.1591e-05	0.00497	0.00069461	0.265	0.057892	1	7.8852e-06	0.00342	0.0019032	0.678
3p	410 (84%)	80	0.41316	1	0.2369	1	8.343e-06	0.0036	0.00010941	0.045	0.88585	1	0.035427	1	0.0014791	0.54	0.01488	1	0.0012472	0.468	0.0047273	1	0.0012846	0.477	0.031734	1
3q	378 (77%)	112	0.63362	1	0.82972	1	0.0005927	0.227	0.052748	1	0.57911	1	0.018222	1	0.056314	1	0.0099605	1	0.035806	1	0.38683	1	0.19674	1	0.79877	1
4p	337 (69%)	153	0.0072912	1	0.049754	1	1.2168e-11	5.8e-09	5.9149e-07	0.000269	0.095964	1	0.37218	1	0.00040235	0.156	4.0273e-05	0.0169	0.0018061	0.648	0.77321	1	0.0013068	0.483	0.00057508	0.221
4q	312 (64%)	178	0.0037533	1	0.015923	1	4.784e-11	2.28e-08	9.8528e-07	0.000444	0.36112	1	0.70458	1	2.0808e-06	0.000928	9.6221e-07	0.000435	0.012057	1	0.11014	1	0.011698	1	0.00057692	0.222
5p	380 (78%)	110	0.70831	1	0.57291	1	5.5576e-09	2.62e-06	0.0042587	1	0.26631	1	0.31884	1	0.20959	1	0.98659	1	0.61795	1	0.0046876	1	0.19588	1	0.69442	1
5q	377 (77%)	113	0.48875	1	0.3645	1	3.5886e-07	0.000164	0.001276	0.475	0.096647	1	0.56452	1	0.014747	1	0.087427	1	0.12133	1	0.00026288	0.104	0.016939	1	0.036506	1
6p	215 (44%)	275	0.3147	1	0.46797	1	0.00011025	0.0452	0.0031074	1	0.44203	1	0.46787	1	0.0021573	0.762	0.003361	1	0.59035	1	0.42318	1	0.10855	1	0.034259	1
6q	200 (41%)	290	0.22299	1	0.42993	1	0.00042818	0.166	0.02359	1	0.57212	1	0.39818	1	0.12739	1	0.14024	1	0.13509	1	0.81048	1	0.33614	1	0.042553	1
7p	292 (60%)	198	0.028525	1	0.012076	1	2.8851e-07	0.000132	5.6636e-06	0.00248	0.70098	1	0.32744	1	0.0018613	0.664	0.0001186	0.0484	0.00011315	0.0463	0.094103	1	0.0016723	0.604	0.0073808	1
7q	265 (54%)	225	0.021457	1	0.049001	1	7.8622e-09	3.68e-06	7.9135e-05	0.0327	1	1	0.29701	1	0.00029012	0.114	4.1077e-05	0.0172	0.00031724	0.124	0.0065012	1	0.0053158	1	0.0077614	1
8p	360 (73%)	130	0.87963	1	0.62554	1	0.0059268	1	0.051831	1	0.48796	1	0.43848	1	0.87648	1	0.62396	1	0.10273	1	0.62006	1	0.29994	1	0.61783	1
8q	296 (60%)	194	0.12613	1	0.12318	1	0.092299	1	0.35494	1	0.6152	1	0.81563	1	0.22575	1	0.3783	1	0.037462	1	0.68846	1	0.13997	1	0.64798	1
9p	364 (74%)	126	0.21191	1	0.021186	1	0.0014875	0.541	0.011793	1	0.72384	1	0.77777	1	0.0066505	1	0.30435	1	0.17995	1	0.10441	1	0.37915	1	0.61481	1
9q	330 (67%)	160	0.048366	1	0.056801	1	0.00030909	0.121	0.093743	1	0.81181	1	0.73161	1	0.0013452	0.495	0.044017	1	0.033174	1	0.00017519	0.0701	0.063922	1	0.63907	1
10p	286 (58%)	204	0.48296	1	0.61772	1	7.0935e-09	3.33e-06	2.7382e-06	0.00122	0.24169	1	0.61133	1	9.5633e-06	0.00411	1.3769e-06	0.000617	0.0037518	1	0.00020688	0.0821	6.5982e-06	0.00288	0.0034459	1
10q	266 (54%)	224	0.023646	1	0.014883	1	1.2772e-07	5.88e-05	2.8654e-06	0.00127	0.9026	1	0.64407	1	2.6462e-07	0.000121	1.8703e-07	8.58e-05	0.0015022	0.545	6.4362e-05	0.0267	4.8308e-05	0.0201	0.014039	1
11p	240 (49%)	250	0.080242	1	0.13462	1	4.4576e-06	0.00197	7.4397e-05	0.0308	0.26976	1	1.9003e-05	0.00808	0.10507	1	0.063909	1	0.0012542	0.469	0.29605	1	0.0026712	0.935	0.076379	1
11q	228 (47%)	262	0.053489	1	0.21704	1	3.7549e-08	1.74e-05	0.00018991	0.0756	0.22549	1	0.010814	1	0.058472	1	0.0041712	1	0.0013485	0.495	0.69128	1	0.0086345	1	0.046332	1
12p	262 (53%)	228	0.00072603	0.277	0.024188	1	3.6835e-08	1.71e-05	0.00052096	0.201	0.28367	1	0.4846	1	3.3354e-05	0.0141	0.00013245	0.0536	0.00033224	0.129	0.043347	1	0.014748	1	0.019823	1
12q	199 (41%)	291	0.0022279	0.784	0.086841	1	7.8827e-06	0.00342	0.0030508	1	0.10555	1	0.31282	1	0.012343	1	0.00013361	0.054	0.12224	1	0.088317	1	0.00086332	0.327	0.068918	1
13q	344 (70%)	146	0.83	1	0.91668	1	0.029384	1	0.025696	1	0.30759	1	0.242	1	0.57608	1	0.0911	1	0.49566	1	0.14647	1	0.0001514	0.0609	0.073269	1
14q	289 (59%)	201	0.157	1	0.65281	1	0.0031493	1	0.0040963	1	0.69803	1	0.23377	1	0.00023244	0.092	1.4033e-05	0.00601	0.0027551	0.962	0.015891	1	0.095477	1	0.023284	1
15q	241 (49%)	249	0.98506	1	0.56402	1	0.00010874	0.0448	0.0095876	1	1	1	0.10488	1	0.092439	1	0.033885	1	0.010014	1	0.040328	1	0.0048049	1	0.014838	1
16p	241 (49%)	249	0.60078	1	0.36376	1	8.2405e-07	0.000373	0.027539	1	0.030883	1	0.50977	1	0.11166	1	0.025063	1	0.03205	1	0.069311	1	0.00085625	0.325	0.059474	1
16q	262 (53%)	228	0.68955	1	0.51856	1	2.1654e-06	0.000964	0.057239	1	0.096349	1	0.96588	1	0.00027638	0.109	0.00012478	0.0507	0.0016521	0.598	0.020903	1	0.00028287	0.111	0.0012545	0.469
17p	350 (71%)	140	0.46022	1	0.29034	1	1.4794e-06	0.000661	0.0033058	1	0.30886	1	0.042989	1	0.21878	1	0.044568	1	0.0021191	0.75	0.38569	1	0.076385	1	0.065685	1
17q	246 (50%)	244	0.57573	1	0.030315	1	8.8596e-06	0.00382	0.013054	1	0.91413	1	0.93792	1	0.055485	1	0.020504	1	0.05324	1	0.16756	1	0.0050859	1	0.12214	1
18p	286 (58%)	204	0.071804	1	0.016815	1	1.5382e-05	0.00657	0.0014256	0.522	0.61934	1	0.52929	1	0.10163	1	0.5126	1	0.001239	0.466	0.050512	1	0.0027585	0.962	0.025002	1
18q	287 (59%)	203	0.3622	1	0.074219	1	3.6633e-05	0.0154	0.01749	1	0.69667	1	0.67799	1	0.17062	1	0.76124	1	0.16092	1	0.3188	1	0.049896	1	0.11868	1
19p	273 (56%)	217	0.23227	1	0.040893	1	1.0643e-07	4.91e-05	0.0043025	1	0.18304	1	0.56181	1	0.38374	1	0.0064804	1	0.062474	1	0.33217	1	0.10107	1	0.21856	1
19q	265 (54%)	225	0.27306	1	0.41134	1	1.2253e-08	5.72e-06	0.0018071	0.648	0.074233	1	0.14588	1	0.051002	1	0.025921	1	0.15458	1	0.54066	1	0.012614	1	0.11929	1
20p	295 (60%)	195	0.14587	1	0.4602	1	7.6401e-07	0.000347	0.0057403	1	0.64366	1	0.033932	1	0.44509	1	0.012014	1	0.31929	1	0.85864	1	0.090187	1	1	1
20q	289 (59%)	201	0.80303	1	0.94683	1	2.0219e-05	0.00857	0.017671	1	0.87848	1	0.3121	1	0.56701	1	0.046104	1	0.081011	1	0.024689	1	0.079733	1	0.82248	1
21q	316 (64%)	174	0.70227	1	0.40307	1	5.1554e-06	0.00226	0.0028281	0.981	0.54554	1	0.70742	1	0.055624	1	0.010812	1	0.0008892	0.336	0.0086164	1	0.12236	1	0.012552	1
22q	313 (64%)	177	0.17027	1	0.3352	1	0.031429	1	0.74655	1	0.57394	1	0.36404	1	0.51834	1	0.40785	1	0.14727	1	0.038715	1	0.095308	1	0.36065	1
xq	187 (38%)	303	0.039349	1	0.20071	1	6.7632e-09	3.18e-06	6.6967e-06	0.00292	0.47861	1	0.94476	1	0.00015714	0.063	0.0013048	0.483	1.8653e-09	8.82e-07	0.0073477	1	3.0717e-08	1.43e-05	4.5811e-06	0.00202