Correlation between gene mutation status and molecular subtypes
Pancreatic Adenocarcinoma (Primary solid tumor)
15 January 2014 | analyses__2014_01_15
Maintainer Information
Citation Information
doi:10.7908/C1WQ028S
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2014): Correlation between gene mutation status and molecular subtypes. Broad Institute of MIT and Harvard. doi:10.7908/C1WQ028S
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 106 genes and 8 molecular subtypes across 57 patients, no significant finding detected with P value < 0.05 and Q value < 0.25.

- No gene mutations related to molecuar subtypes.

Results
Overview of the results

Table 1. Get Full Table Overview of the association between mutation status of 106 genes and 8 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, no significant finding detected.

|  | Clinical Features | CN CNMF | METHLYATION CNMF | MRNASEQ CNMF | MRNASEQ CHIERARCHICAL | MIRSEQ CNMF | MIRSEQ CHIERARCHICAL | MIRSEQ MATURE CNMF | MIRSEQ MATURE CHIERARCHICAL
| nMutated (%) | nWild-Type | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test | Fisher's exact test
C15ORF24 | 6 (11%) | 51 | 0.238 (1.00) | 0.748 (1.00) | 0.622 (1.00) | 0.248 (1.00) | 0.621 (1.00) | 0.848 (1.00) | 0.214 (1.00) | 0.261 (1.00)
IRS1 | 5 (9%) | 52 | 0.336 (1.00) | 0.506 (1.00) | 0.741 (1.00) | 1 (1.00) | 0.833 (1.00) | 1 (1.00) | 0.711 (1.00) | 1 (1.00)
FYN | 5 (9%) | 52 | 0.126 (1.00) | 0.244 (1.00) | 0.0383 (1.00) | 0.0972 (1.00) | 0.164 (1.00) | 0.451 (1.00) | 0.0919 (1.00) | 0.0693 (1.00)
FADS2 | 5 (9%) | 52 | 1 (1.00) | 0.712 (1.00) | 0.412 (1.00) | 1 (1.00) | 0.215 (1.00) | 0.0964 (1.00) | 0.711 (1.00) | 0.0239 (1.00)
C14ORF49 | 9 (16%) | 48 | 0.31 (1.00) | 0.117 (1.00) | 0.259 (1.00) | 0.233 (1.00) | 0.149 (1.00) | 0.191 (1.00) | 0.441 (1.00) | 0.239 (1.00)
FGF10 | 6 (11%) | 51 | 1 (1.00) | 0.103 (1.00) | 0.622 (1.00) | 0.423 (1.00) | 0.155 (1.00) | 0.848 (1.00) | 0.0911 (1.00) | 0.261 (1.00)
CEL | 4 (7%) | 53 | 0.66 (1.00) | 1 (1.00) | 0.0397 (1.00) | 0.743 (1.00) | 0.112 (1.00) | 0.812 (1.00) | 0.391 (1.00) | 0.29 (1.00)
CCR3 | 5 (9%) | 52 | 0.7 (1.00) | 0.712 (1.00) | 0.738 (1.00) | 1 (1.00) | 0.582 (1.00) | 0.694 (1.00) | 0.831 (1.00) | 0.832 (1.00)
OR10A2 | 6 (11%) | 51 | 0.339 (1.00) | 0.08 (1.00) | 0.0383 (1.00) | 0.132 (1.00) | 0.057 (1.00) | 0.0482 (1.00) | 0.272 (1.00) | 0.109 (1.00)
OR10A7 | 9 (16%) | 48 | 0.718 (1.00) | 0.342 (1.00) | 0.0971 (1.00) | 0.415 (1.00) | 0.396 (1.00) | 0.786 (1.00) | 0.622 (1.00) | 0.49 (1.00)
POP5 | 5 (9%) | 52 | 0.126 (1.00) | 0.155 (1.00) | 0.0199 (1.00) | 0.132 (1.00) | 0.029 (1.00) | 0.451 (1.00) | 0.0919 (1.00) | 0.0693 (1.00)
SRP14 | 7 (12%) | 50 | 1 (1.00) | 1 (1.00) | 0.932 (1.00) | 0.514 (1.00) | 0.758 (1.00) | 0.492 (1.00) | 0.204 (1.00) | 0.426 (1.00)
WRN | 5 (9%) | 52 | 0.329 (1.00) | 0.845 (1.00) | 0.914 (1.00) | 0.611 (1.00) | 0.691 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00)
TMEM40 | 9 (16%) | 48 | 0.691 (1.00) | 0.342 (1.00) | 0.567 (1.00) | 1 (1.00) | 0.561 (1.00) | 0.786 (1.00) | 0.317 (1.00) | 1 (1.00)
KRAS | 33 (58%) | 24 | 0.0479 (1.00) | 0.000979 (0.82) | 0.0506 (1.00) | 0.0158 (1.00) | 0.0805 (1.00) | 0.133 (1.00) | 0.207 (1.00) | 0.286 (1.00)
TP53 | 37 (65%) | 20 | 0.0713 (1.00) | 0.00522 (1.00) | 0.125 (1.00) | 0.0992 (1.00) | 0.419 (1.00) | 0.389 (1.00) | 0.302 (1.00) | 0.497 (1.00)
QRICH1 | 7 (12%) | 50 | 0.0687 (1.00) | 0.123 (1.00) | 0.386 (1.00) | 0.0845 (1.00) | 0.426 (1.00) | 0.12 (1.00) | 0.00445 (1.00) | 0.11 (1.00)
ST6GALNAC5 | 6 (11%) | 51 | 1 (1.00) | 0.356 (1.00) | 0.655 (1.00) | 0.82 (1.00) | 1 (1.00) | 1 (1.00) | 0.721 (1.00) | 1 (1.00)
TNFSF9 | 6 (11%) | 51 | 0.238 (1.00) | 0.748 (1.00) | 0.169 (1.00) | 0.135 (1.00) | 0.451 (1.00) | 0.848 (1.00) | 0.112 (1.00) | 0.851 (1.00)
CDKN2A | 13 (23%) | 44 | 0.413 (1.00) | 0.11 (1.00) | 0.599 (1.00) | 0.876 (1.00) | 0.213 (1.00) | 0.82 (1.00) | 0.906 (1.00) | 0.753 (1.00)
SEH1L | 8 (14%) | 49 | 0.405 (1.00) | 0.388 (1.00) | 0.589 (1.00) | 0.608 (1.00) | 0.689 (1.00) | 0.0889 (1.00) | 0.0339 (1.00) | 0.104 (1.00)
SCD | 8 (14%) | 49 | 0.405 (1.00) | 0.388 (1.00) | 0.093 (1.00) | 1 (1.00) | 0.357 (1.00) | 0.77 (1.00) | 0.6 (1.00) | 0.275 (1.00)
TMC4 | 9 (16%) | 48 | 0.889 (1.00) | 0.214 (1.00) | 0.39 (1.00) | 0.153 (1.00) | 0.136 (1.00) | 0.516 (1.00) | 0.676 (1.00) | 0.462 (1.00)
MED15 | 9 (16%) | 48 | 1 (1.00) | 0.816 (1.00) | 0.665 (1.00) | 0.375 (1.00) | 0.632 (1.00) | 1 (1.00) | 0.492 (1.00) | 1 (1.00)
TNFRSF9 | 6 (11%) | 51 | 1 (1.00) | 0.549 (1.00) | 0.595 (1.00) | 0.611 (1.00) | 0.527 (1.00) | 0.436 (1.00) | 0.857 (1.00) | 0.63 (1.00)
BRDT | 8 (14%) | 49 | 0.405 (1.00) | 0.388 (1.00) | 0.479 (1.00) | 0.836 (1.00) | 0.0503 (1.00) | 0.391 (1.00) | 0.467 (1.00) | 0.522 (1.00)
CXXC4 | 6 (11%) | 51 | 0.7 (1.00) | 0.748 (1.00) | 0.932 (1.00) | 0.645 (1.00) | 0.855 (1.00) | 0.521 (1.00) | 1 (1.00) | 0.541 (1.00)
MBD3 | 6 (11%) | 51 | 1 (1.00) | 0.866 (1.00) | 0.689 (1.00) | 0.771 (1.00) | 0.451 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00)
TULP1 | 6 (11%) | 51 | 0.238 (1.00) | 0.549 (1.00) | 0.227 (1.00) | 0.423 (1.00) | 0.057 (1.00) | 0.115 (1.00) | 0.272 (1.00) | 0.00854 (1.00)
PHF13 | 4 (7%) | 53 | 0.66 (1.00) | 0.0816 (1.00) | 0.236 (1.00) | 0.118 (1.00) | 0.323 (1.00) | 0.499 (1.00) | 0.0922 (1.00) | 0.657 (1.00)
BHLHB9 | 5 (9%) | 52 | 0.255 (1.00) | 0.0507 (1.00) | 0.118 (1.00) | 0.0485 (1.00) | 0.0892 (1.00) | 0.073 (1.00) | 0.0353 (1.00) | 0.0364 (1.00)
PRDM8 | 6 (11%) | 51 | 0.238 (1.00) | 0.748 (1.00) | 0.914 (1.00) | 1 (1.00) | 0.235 (1.00) | 0.0806 (1.00) | 0.214 (1.00) | 0.0729 (1.00)
SMAD4 | 10 (18%) | 47 | 0.113 (1.00) | 0.0402 (1.00) | 0.235 (1.00) | 0.182 (1.00) | 0.0725 (1.00) | 0.335 (1.00) | 0.134 (1.00) | 0.209 (1.00)
C14ORF43 | 7 (12%) | 50 | 0.655 (1.00) | 0.145 (1.00) | 0.355 (1.00) | 0.584 (1.00) | 1 (1.00) | 1 (1.00) | 0.578 (1.00) | 0.658 (1.00)
MEPCE | 7 (12%) | 50 | 0.147 (1.00) | 0.592 (1.00) | 0.479 (1.00) | 0.836 (1.00) | 0.233 (1.00) | 0.0603 (1.00) | 0.138 (1.00) | 0.0871 (1.00)
HVCN1 | 4 (7%) | 53 | 0.66 (1.00) | 1 (1.00) | 0.0397 (1.00) | 0.743 (1.00) | 0.112 (1.00) | 0.0789 (1.00) | 0.391 (1.00) | 0.0155 (1.00)
FOXP2 | 8 (14%) | 49 | 0.782 (1.00) | 0.625 (1.00) | 0.479 (1.00) | 0.836 (1.00) | 0.0503 (1.00) | 0.192 (1.00) | 0.275 (1.00) | 0.316 (1.00)
GRIN1 | 5 (9%) | 52 | 0.41 (1.00) | 0.712 (1.00) | 0.0932 (1.00) | 1 (1.00) | 0.215 (1.00) | 1 (1.00) | 0.485 (1.00) | 0.247 (1.00)
MAGEA10 | 4 (7%) | 53 | 0.164 (1.00) | 0.349 (1.00) | 0.0843 (1.00) | 0.189 (1.00) | 0.0728 (1.00) | 0.499 (1.00) | 0.17 (1.00) | 0.0591 (1.00)
C16ORF79 | 4 (7%) | 53 | 1 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00)
ERF | 6 (11%) | 51 | 0.339 (1.00) | 0.182 (1.00) | 0.138 (1.00) | 0.611 (1.00) | 0.0759 (1.00) | 0.154 (1.00) | 0.272 (1.00) | 0.261 (1.00)
IFNGR2 | 4 (7%) | 53 | 0.66 (1.00) | 0.272 (1.00) | 0.209 (1.00) | 0.511 (1.00) | 0.66 (1.00) | 0.499 (1.00) | 0.663 (1.00) | 0.657 (1.00)
OLIG3 | 5 (9%) | 52 | 0.7 (1.00) | 0.593 (1.00) | 0.181 (1.00) | 0.0191 (1.00) | 0.0892 (1.00) | 0.367 (1.00) | 0.114 (1.00) | 0.313 (1.00)
NDEL1 | 4 (7%) | 53 | 0.66 (1.00) | 1 (1.00) | 0.0397 (1.00) | 0.743 (1.00) | 0.112 (1.00) | 0.812 (1.00) | 0.391 (1.00) | 0.29 (1.00)
EGR1 | 8 (14%) | 49 | 0.691 (1.00) | 0.705 (1.00) | 0.817 (1.00) | 0.82 (1.00) | 0.462 (1.00) | 0.872 (1.00) | 0.315 (1.00) | 0.881 (1.00)
CDH3 | 4 (7%) | 53 | 0.799 (1.00) | 0.272 (1.00) | 0.0222 (1.00) | 0.431 (1.00) | 0.0511 (1.00) | 0.362 (1.00) | 0.391 (1.00) | 0.383 (1.00)
PCDHAC2 | 9 (16%) | 48 | 0.272 (1.00) | 0.0367 (1.00) | 0.82 (1.00) | 0.329 (1.00) | 0.882 (1.00) | 1 (1.00) | 0.676 (1.00) | 1 (1.00)
ZFP36 | 4 (7%) | 53 | 0.799 (1.00) | 0.349 (1.00) | 0.103 (1.00) | 0.431 (1.00) | 0.431 (1.00) | 0.362 (1.00) | 0.391 (1.00) | 0.383 (1.00)
NR4A3 | 5 (9%) | 52 | 0.329 (1.00) | 0.0507 (1.00) | 0.855 (1.00) | 0.771 (1.00) | 1 (1.00) | 0.837 (1.00) | 1 (1.00) | 1 (1.00)
RAB11FIP5 | 5 (9%) | 52 | 0.584 (1.00) | 0.244 (1.00) | 0.451 (1.00) | 0.743 (1.00) | 0.833 (1.00) | 1 (1.00) | 0.711 (1.00) | 1 (1.00)
OTUD4 | 7 (12%) | 50 | 0.205 (1.00) | 1 (1.00) | 0.298 (1.00) | 1 (1.00) | 0.66 (1.00) | 1 (1.00) | 0.761 (1.00) | 0.658 (1.00)
PPARGC1B | 7 (12%) | 50 | 1 (1.00) | 0.592 (1.00) | 0.938 (1.00) | 0.707 (1.00) | 0.873 (1.00) | 0.492 (1.00) | 0.086 (1.00) | 0.658 (1.00)
PDZD2 | 9 (16%) | 48 | 0.57 (1.00) | 0.462 (1.00) | 0.513 (1.00) | 0.534 (1.00) | 0.506 (1.00) | 0.191 (1.00) | 0.0688 (1.00) | 0.0558 (1.00)
NPNT | 4 (7%) | 53 | 0.336 (1.00) | 1 (1.00) | 0.738 (1.00) | 0.743 (1.00) | 0.66 (1.00) | 0.812 (1.00) | 1 (1.00) | 1 (1.00)
MED9 | 3 (5%) | 54 | 0.282 (1.00) | 0.0131 (1.00) |  |  | 0.589 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00)
BCL2L1 | 3 (5%) | 54 | 0.795 (1.00) | 0.782 (1.00) | 0.767 (1.00) | 0.289 (1.00) | 0.589 (1.00) | 1 (1.00) | 0.582 (1.00) | 1 (1.00)
CPLX3 | 3 (5%) | 54 | 0.414 (1.00) | 0.603 (1.00) | 0.203 (1.00) | 0.431 (1.00) | 0.0663 (1.00) | 0.112 (1.00) | 0.138 (1.00) | 0.129 (1.00)
IRX4 | 3 (5%) | 54 | 0.795 (1.00) | 0.782 (1.00) | 0.243 (1.00) | 1 (1.00) | 0.304 (1.00) | 0.554 (1.00) | 0.786 (1.00) | 0.776 (1.00)
NFAT5 | 8 (14%) | 49 | 0.782 (1.00) | 0.388 (1.00) | 0.567 (1.00) | 0.862 (1.00) | 0.783 (1.00) | 0.516 (1.00) | 0.886 (1.00) | 0.881 (1.00)
WASF3 | 5 (9%) | 52 | 0.584 (1.00) | 0.244 (1.00) | 0.209 (1.00) | 0.511 (1.00) | 0.582 (1.00) | 0.694 (1.00) | 1 (1.00) | 0.832 (1.00)
ABCC2 | 6 (11%) | 51 | 0.238 (1.00) | 0.182 (1.00) | 0.255 (1.00) | 0.423 (1.00) | 0.527 (1.00) | 0.154 (1.00) | 0.272 (1.00) | 0.261 (1.00)
ATP13A3 | 4 (7%) | 53 | 0.53 (1.00) | 0.272 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00) | 0.827 (1.00) | 1 (1.00)
ARHGAP18 | 4 (7%) | 53 | 0.414 (1.00) | 0.349 (1.00) | 0.071 (1.00) | 0.189 (1.00) | 0.0728 (1.00) | 0.362 (1.00) | 0.17 (1.00) | 0.165 (1.00)
CIR1 | 3 (5%) | 54 | 1 (1.00) | 0.603 (1.00) |  |  | 0.188 (1.00) | 0.755 (1.00) | 0.582 (1.00) | 0.776 (1.00)
KIAA0020 | 4 (7%) | 53 | 0.799 (1.00) | 0.272 (1.00) | 0.103 (1.00) | 0.431 (1.00) | 0.431 (1.00) | 1 (1.00) | 0.391 (1.00) | 0.657 (1.00)
ZNF608 | 6 (11%) | 51 | 0.0687 (1.00) | 0.103 (1.00) | 0.622 (1.00) | 0.423 (1.00) | 0.155 (1.00) | 0.154 (1.00) | 0.0455 (1.00) | 0.0184 (1.00)
NEDD4L | 6 (11%) | 51 | 1 (1.00) | 0.466 (1.00) | 0.817 (1.00) | 0.82 (1.00) | 0.733 (1.00) | 0.36 (1.00) | 0.857 (1.00) | 0.317 (1.00)
THBS4 | 6 (11%) | 51 | 0.339 (1.00) | 0.103 (1.00) | 0.138 (1.00) | 0.611 (1.00) | 0.527 (1.00) | 0.848 (1.00) | 0.214 (1.00) | 0.261 (1.00)
MMRN1 | 6 (11%) | 51 | 1 (1.00) | 0.748 (1.00) | 0.914 (1.00) | 1 (1.00) | 0.733 (1.00) | 0.848 (1.00) | 0.626 (1.00) | 0.851 (1.00)
GPR25 | 3 (5%) | 54 | 0.414 (1.00) | 0.603 (1.00) | 1 (1.00) | 1 (1.00) | 0.786 (1.00) | 0.112 (1.00) | 0.293 (1.00) | 0.129 (1.00)
SORBS2 | 6 (11%) | 51 | 0.522 (1.00) | 0.0307 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00)
SULT1C3 | 3 (5%) | 54 | 0.795 (1.00) | 0.102 (1.00) | 0.88 (1.00) | 0.667 (1.00) | 0.589 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00)
ECSIT | 4 (7%) | 53 | 0.66 (1.00) | 1 (1.00) | 0.0397 (1.00) | 0.743 (1.00) | 0.112 (1.00) | 0.812 (1.00) | 0.391 (1.00) | 0.29 (1.00)
ZNF326 | 4 (7%) | 53 | 0.799 (1.00) | 0.272 (1.00) | 0.243 (1.00) | 1 (1.00) | 0.66 (1.00) | 0.499 (1.00) | 0.663 (1.00) | 0.657 (1.00)
C15ORF52 | 3 (5%) | 54 | 1 (1.00) | 0.603 (1.00) |  |  | 0.786 (1.00) | 0.554 (1.00) | 0.786 (1.00) | 0.776 (1.00)
SLC39A5 | 3 (5%) | 54 | 0.795 (1.00) | 0.782 (1.00) | 1 (1.00) | 1 (1.00) | 0.786 (1.00) | 0.755 (1.00) | 0.582 (1.00) | 0.776 (1.00)
SLC24A1 | 4 (7%) | 53 | 0.164 (1.00) | 0.349 (1.00) | 0.451 (1.00) | 0.743 (1.00) | 0.431 (1.00) | 0.113 (1.00) | 0.17 (1.00) | 0.165 (1.00)
PUM2 | 5 (9%) | 52 | 0.41 (1.00) | 0.712 (1.00) | 0.638 (1.00) | 1 (1.00) | 0.833 (1.00) | 1 (1.00) | 0.312 (1.00) | 0.247 (1.00)
SYT2 | 5 (9%) | 52 | 0.126 (1.00) | 0.0249 (1.00) | 0.15 (1.00) | 0.132 (1.00) | 0.029 (1.00) | 0.0425 (1.00) | 0.0919 (1.00) | 0.0693 (1.00)
SLITRK5 | 6 (11%) | 51 | 0.238 (1.00) | 0.748 (1.00) | 0.255 (1.00) | 1 (1.00) | 0.527 (1.00) | 0.848 (1.00) | 0.214 (1.00) | 0.261 (1.00)
NAP1L3 | 3 (5%) | 54 | 1 (1.00) | 0.782 (1.00) | 0.243 (1.00) | 1 (1.00) | 0.304 (1.00) | 0.554 (1.00) | 0.786 (1.00) | 0.776 (1.00)
PHF14 | 3 (5%) | 54 | 0.795 (1.00) | 0.782 (1.00) | 1 (1.00) | 1 (1.00) | 0.786 (1.00) | 0.554 (1.00) | 0.786 (1.00) | 0.776 (1.00)
CCDC28B | 4 (7%) | 53 | 0.164 (1.00) | 0.349 (1.00) | 0.0142 (1.00) | 0.118 (1.00) | 0.112 (1.00) | 0.812 (1.00) | 0.17 (1.00) | 0.29 (1.00)
PDE12 | 3 (5%) | 54 |  | 0.603 (1.00) |  |  | 0.786 (1.00) | 0.755 (1.00) | 0.786 (1.00) | 0.776 (1.00)
FLAD1 | 3 (5%) | 54 | 0.414 (1.00) | 0.175 (1.00) | 0.103 (1.00) | 0.431 (1.00) | 0.117 (1.00) | 0.182 (1.00) | 0.138 (1.00) | 0.208 (1.00)
ENG | 3 (5%) | 54 | 0.414 (1.00) | 0.175 (1.00) | 0.103 (1.00) | 0.431 (1.00) | 0.117 (1.00) | 0.03 (1.00) | 0.293 (1.00) | 0.0392 (1.00)
PABPC1 | 4 (7%) | 53 | 0.53 (1.00) | 0.556 (1.00) | 0.767 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00)
ATG16L2 | 3 (5%) | 54 | 1 (1.00) | 0.331 (1.00) | 0.243 (1.00) | 1 (1.00) | 0.304 (1.00) | 0.376 (1.00) | 0.786 (1.00) | 0.0796 (1.00)
LRCH1 | 7 (12%) | 50 | 0.655 (1.00) | 0.451 (1.00) | 0.298 (1.00) | 1 (1.00) | 0.66 (1.00) | 0.655 (1.00) | 0.761 (1.00) | 0.226 (1.00)
PLCZ1 | 3 (5%) | 54 | 1 (1.00) | 0.331 (1.00) | 0.243 (1.00) | 1 (1.00) | 0.304 (1.00) | 1 (1.00) | 0.786 (1.00) | 0.776 (1.00)
TAOK2 | 6 (11%) | 51 | 1 (1.00) | 1 (1.00) | 1 (1.00) | 0.645 (1.00) | 1 (1.00) | 0.848 (1.00) | 0.112 (1.00) | 0.851 (1.00)
ZMIZ1 | 6 (11%) | 51 | 0.149 (1.00) | 0.866 (1.00) | 0.554 (1.00) | 0.463 (1.00) | 0.855 (1.00) | 1 (1.00) | 0.332 (1.00) | 1 (1.00)
SYT15 | 6 (11%) | 51 | 1 (1.00) | 0.0617 (1.00) | 0.817 (1.00) | 0.82 (1.00) | 1 (1.00) | 0.724 (1.00) | 0.857 (1.00) | 0.851 (1.00)
LRTM1 | 3 (5%) | 54 | 0.414 (1.00) | 0.175 (1.00) | 0.00345 (1.00) | 0.289 (1.00) | 1 (1.00) | 0.376 (1.00) | 0.582 (1.00) | 0.392 (1.00)
TIMM50 | 4 (7%) | 53 | 0.336 (1.00) | 0.556 (1.00) | 0.408 (1.00) | 1 (1.00) | 0.799 (1.00) | 0.812 (1.00) | 0.827 (1.00) | 1 (1.00)
CCNK | 4 (7%) | 53 | 0.66 (1.00) | 1 (1.00) | 0.296 (1.00) | 1 (1.00) | 0.66 (1.00) | 0.499 (1.00) | 0.663 (1.00) | 0.657 (1.00)
TTK | 5 (9%) | 52 | 0.126 (1.00) | 0.244 (1.00) | 0.595 (1.00) | 0.343 (1.00) | 0.833 (1.00) | 0.224 (1.00) | 0.0713 (1.00) | 0.247 (1.00)
TMEM175 | 4 (7%) | 53 | 0.66 (1.00) | 0.349 (1.00) | 0.676 (1.00) | 0.743 (1.00) | 0.323 (1.00) | 0.0273 (1.00) | 0.17 (1.00) | 0.0323 (1.00)
CD93 | 5 (9%) | 52 | 1 (1.00) | 0.00748 (1.00) | 0.554 (1.00) | 0.235 (1.00) | 0.483 (1.00) | 0.837 (1.00) | 0.384 (1.00) | 1 (1.00)
C19ORF55 | 4 (7%) | 53 | 0.53 (1.00) | 0.0289 (1.00) | 0.88 (1.00) | 0.667 (1.00) | 0.541 (1.00) | 1 (1.00) | 0.827 (1.00) | 1 (1.00)
MRPL48 | 3 (5%) | 54 | 1 (1.00) | 0.603 (1.00) | 1 (1.00) | 1 (1.00) | 0.786 (1.00) | 0.112 (1.00) | 0.041 (1.00) | 0.129 (1.00)
PVRL1 | 5 (9%) | 52 | 0.41 (1.00) | 0.845 (1.00) | 0.0932 (1.00) | 1 (1.00) | 0.215 (1.00) | 0.451 (1.00) | 0.485 (1.00) | 0.478 (1.00)
ACIN1 | 3 (5%) | 54 | 1 (1.00) | 0.331 (1.00) |  |  | 0.589 (1.00) | 0.755 (1.00) | 0.582 (1.00) | 0.776 (1.00)
MAML3 | 7 (12%) | 50 | 0.879 (1.00) | 0.145 (1.00) | 0.5 (1.00) | 0.464 (1.00) | 0.325 (1.00) | 0.741 (1.00) | 1 (1.00) | 1 (1.00)
EDC4 | 5 (9%) | 52 | 1 (1.00) | 0.712 (1.00) | 0.495 (1.00) | 0.667 (1.00) | 1 (1.00) | 1 (1.00) | 0.384 (1.00) | 1 (1.00)
SETD1A | 3 (5%) | 54 | 0.795 (1.00) | 1 (1.00) | 1 (1.00) | 1 (1.00) | 0.786 (1.00) | 1 (1.00) | 0.582 (1.00) | 0.776 (1.00)

'C15ORF24 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S1. Gene #1: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
C15ORF24 MUTATED | 1 | 5 | 0
C15ORF24 WILD-TYPE | 12 | 24 | 14

'C15ORF24 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S2. Gene #1: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
C15ORF24 MUTATED | 1 | 3 | 2
C15ORF24 WILD-TYPE | 17 | 21 | 12

'C15ORF24 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S3. Gene #1: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
C15ORF24 MUTATED | 1 | 2 | 2 | 1
C15ORF24 WILD-TYPE | 17 | 10 | 7 | 7

'C15ORF24 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S4. Gene #1: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
C15ORF24 MUTATED | 1 | 1 | 4
C15ORF24 WILD-TYPE | 3 | 17 | 21

'C15ORF24 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S5. Gene #1: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
C15ORF24 MUTATED | 2 | 2 | 2
C15ORF24 WILD-TYPE | 23 | 9 | 12

'C15ORF24 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S6. Gene #1: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
C15ORF24 MUTATED | 1 | 3 | 2
C15ORF24 WILD-TYPE | 7 | 16 | 21

'C15ORF24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S7. Gene #1: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
C15ORF24 MUTATED | 1 | 2 | 3
C15ORF24 WILD-TYPE | 20 | 7 | 17

'C15ORF24 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S8. Gene #1: 'C15ORF24 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
C15ORF24 MUTATED | 2 | 1 | 3
C15ORF24 WILD-TYPE | 7 | 21 | 16

'IRS1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S9. Gene #2: 'IRS1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
IRS1 MUTATED | 2 | 2 | 0
IRS1 WILD-TYPE | 11 | 27 | 14

'IRS1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S10. Gene #2: 'IRS1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
IRS1 MUTATED | 2 | 3 | 0
IRS1 WILD-TYPE | 16 | 21 | 14

'IRS1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S11. Gene #2: 'IRS1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
IRS1 MUTATED | 2 | 2 | 0 | 1
IRS1 WILD-TYPE | 16 | 10 | 9 | 7

'IRS1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S12. Gene #2: 'IRS1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
IRS1 MUTATED | 0 | 2 | 3
IRS1 WILD-TYPE | 4 | 16 | 22

'IRS1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S13. Gene #2: 'IRS1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
IRS1 MUTATED | 2 | 1 | 2
IRS1 WILD-TYPE | 23 | 10 | 12

'IRS1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S14. Gene #2: 'IRS1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
IRS1 MUTATED | 1 | 2 | 2
IRS1 WILD-TYPE | 7 | 17 | 21

'IRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S15. Gene #2: 'IRS1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
IRS1 MUTATED | 2 | 0 | 3
IRS1 WILD-TYPE | 19 | 9 | 17

'IRS1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S16. Gene #2: 'IRS1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
IRS1 MUTATED | 1 | 2 | 2
IRS1 WILD-TYPE | 8 | 20 | 17

'FYN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S17. Gene #3: 'FYN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
FYN MUTATED | 0 | 5 | 0
FYN WILD-TYPE | 13 | 24 | 14

'FYN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S18. Gene #3: 'FYN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
FYN MUTATED | 0 | 3 | 2
FYN WILD-TYPE | 18 | 21 | 12

'FYN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0383 (Fisher's exact test), Q value = 1

Table S19. Gene #3: 'FYN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
FYN MUTATED | 0 | 1 | 3 | 1
FYN WILD-TYPE | 18 | 11 | 6 | 7

Figure S1. Get High-res Image Gene #3: 'FYN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'FYN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0972 (Fisher's exact test), Q value = 1

Table S20. Gene #3: 'FYN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
FYN MUTATED | 1 | 0 | 4
FYN WILD-TYPE | 3 | 18 | 21

'FYN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S21. Gene #3: 'FYN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
FYN MUTATED | 1 | 1 | 3
FYN WILD-TYPE | 24 | 10 | 11

'FYN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S22. Gene #3: 'FYN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
FYN MUTATED | 1 | 3 | 1
FYN WILD-TYPE | 7 | 16 | 22

'FYN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0919 (Fisher's exact test), Q value = 1

Table S23. Gene #3: 'FYN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
FYN MUTATED | 0 | 1 | 4
FYN WILD-TYPE | 21 | 8 | 16

'FYN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0693 (Fisher's exact test), Q value = 1

Table S24. Gene #3: 'FYN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
FYN MUTATED | 2 | 0 | 3
FYN WILD-TYPE | 7 | 22 | 16

'FADS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S25. Gene #4: 'FADS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
FADS2 MUTATED | 1 | 3 | 1
FADS2 WILD-TYPE | 12 | 26 | 13

'FADS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S26. Gene #4: 'FADS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
FADS2 MUTATED | 1 | 2 | 2
FADS2 WILD-TYPE | 17 | 22 | 12

'FADS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.412 (Fisher's exact test), Q value = 1

Table S27. Gene #4: 'FADS2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
FADS2 MUTATED | 2 | 0 | 2 | 1
FADS2 WILD-TYPE | 16 | 12 | 7 | 7

'FADS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S28. Gene #4: 'FADS2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
FADS2 MUTATED | 0 | 2 | 3
FADS2 WILD-TYPE | 4 | 16 | 22

'FADS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S29. Gene #4: 'FADS2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
FADS2 MUTATED | 2 | 0 | 3
FADS2 WILD-TYPE | 23 | 11 | 11

'FADS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0964 (Fisher's exact test), Q value = 1

Table S30. Gene #4: 'FADS2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
FADS2 MUTATED | 2 | 0 | 3
FADS2 WILD-TYPE | 6 | 19 | 20

'FADS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S31. Gene #4: 'FADS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
FADS2 MUTATED | 2 | 0 | 3
FADS2 WILD-TYPE | 19 | 9 | 17

'FADS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0239 (Fisher's exact test), Q value = 1

Table S32. Gene #4: 'FADS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
FADS2 MUTATED | 3 | 2 | 0
FADS2 WILD-TYPE | 6 | 20 | 19

Figure S2. Get High-res Image Gene #4: 'FADS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C14ORF49 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S33. Gene #5: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
C14ORF49 MUTATED | 1 | 7 | 1
C14ORF49 WILD-TYPE | 12 | 22 | 13

'C14ORF49 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S34. Gene #5: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
C14ORF49 MUTATED | 1 | 7 | 1
C14ORF49 WILD-TYPE | 17 | 17 | 13

'C14ORF49 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S35. Gene #5: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
C14ORF49 MUTATED | 1 | 2 | 3 | 1
C14ORF49 WILD-TYPE | 17 | 10 | 6 | 7

'C14ORF49 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S36. Gene #5: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
C14ORF49 MUTATED | 0 | 1 | 6
C14ORF49 WILD-TYPE | 4 | 17 | 19

'C14ORF49 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S37. Gene #5: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
C14ORF49 MUTATED | 2 | 3 | 4
C14ORF49 WILD-TYPE | 23 | 8 | 10

'C14ORF49 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S38. Gene #5: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
C14ORF49 MUTATED | 3 | 4 | 2
C14ORF49 WILD-TYPE | 5 | 15 | 21

'C14ORF49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S39. Gene #5: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
C14ORF49 MUTATED | 2 | 2 | 5
C14ORF49 WILD-TYPE | 19 | 7 | 15

'C14ORF49 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S40. Gene #5: 'C14ORF49 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
C14ORF49 MUTATED | 3 | 2 | 4
C14ORF49 WILD-TYPE | 6 | 20 | 15

'FGF10 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S41. Gene #6: 'FGF10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
FGF10 MUTATED | 1 | 4 | 1
FGF10 WILD-TYPE | 12 | 25 | 13

'FGF10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S42. Gene #6: 'FGF10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
FGF10 MUTATED | 0 | 3 | 3
FGF10 WILD-TYPE | 18 | 21 | 11

'FGF10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S43. Gene #6: 'FGF10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
FGF10 MUTATED | 1 | 2 | 2 | 1
FGF10 WILD-TYPE | 17 | 10 | 7 | 7

'FGF10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S44. Gene #6: 'FGF10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
FGF10 MUTATED | 0 | 1 | 5
FGF10 WILD-TYPE | 4 | 17 | 20

'FGF10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S45. Gene #6: 'FGF10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
FGF10 MUTATED | 1 | 2 | 3
FGF10 WILD-TYPE | 24 | 9 | 11

'FGF10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S46. Gene #6: 'FGF10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
FGF10 MUTATED | 1 | 3 | 2
FGF10 WILD-TYPE | 7 | 16 | 21

'FGF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0911 (Fisher's exact test), Q value = 1

Table S47. Gene #6: 'FGF10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
FGF10 MUTATED | 1 | 0 | 5
FGF10 WILD-TYPE | 20 | 9 | 15

'FGF10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S48. Gene #6: 'FGF10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
FGF10 MUTATED | 2 | 1 | 3
FGF10 WILD-TYPE | 7 | 21 | 16

'CEL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S49. Gene #7: 'CEL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
CEL MUTATED | 1 | 3 | 0
CEL WILD-TYPE | 12 | 26 | 14

'CEL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S50. Gene #7: 'CEL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
CEL MUTATED | 1 | 2 | 1
CEL WILD-TYPE | 17 | 22 | 13

'CEL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0397 (Fisher's exact test), Q value = 1

Table S51. Gene #7: 'CEL MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
CEL MUTATED | 1 | 0 | 3 | 0
CEL WILD-TYPE | 17 | 12 | 6 | 8

Figure S3. Get High-res Image Gene #7: 'CEL MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'CEL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S52. Gene #7: 'CEL MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
CEL MUTATED | 0 | 1 | 3
CEL WILD-TYPE | 4 | 17 | 22

'CEL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S53. Gene #7: 'CEL MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
CEL MUTATED | 1 | 0 | 3
CEL WILD-TYPE | 24 | 11 | 11

'CEL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S54. Gene #7: 'CEL MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
CEL MUTATED | 1 | 1 | 2
CEL WILD-TYPE | 7 | 18 | 21

'CEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S55. Gene #7: 'CEL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
CEL MUTATED | 1 | 0 | 3
CEL WILD-TYPE | 20 | 9 | 17

'CEL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S56. Gene #7: 'CEL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
CEL MUTATED | 2 | 1 | 1
CEL WILD-TYPE | 7 | 21 | 18

'CCR3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S57. Gene #8: 'CCR3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
CCR3 MUTATED | 2 | 2 | 1
CCR3 WILD-TYPE | 11 | 27 | 13

'CCR3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S58. Gene #8: 'CCR3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
CCR3 MUTATED | 1 | 2 | 2
CCR3 WILD-TYPE | 17 | 22 | 12

'CCR3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S59. Gene #8: 'CCR3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
CCR3 MUTATED | 2 | 0 | 1 | 1
CCR3 WILD-TYPE | 16 | 12 | 8 | 7

'CCR3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S60. Gene #8: 'CCR3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
CCR3 MUTATED | 0 | 2 | 2
CCR3 WILD-TYPE | 4 | 16 | 23

'CCR3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S61. Gene #8: 'CCR3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
CCR3 MUTATED | 3 | 0 | 2
CCR3 WILD-TYPE | 22 | 11 | 12

'CCR3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S62. Gene #8: 'CCR3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
CCR3 MUTATED | 1 | 1 | 3
CCR3 WILD-TYPE | 7 | 18 | 20

'CCR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S63. Gene #8: 'CCR3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
CCR3 MUTATED | 3 | 0 | 2
CCR3 WILD-TYPE | 18 | 9 | 18

'CCR3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S64. Gene #8: 'CCR3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
CCR3 MUTATED | 1 | 3 | 1
CCR3 WILD-TYPE | 8 | 19 | 18

'OR10A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S65. Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
OR10A2 MUTATED | 0 | 5 | 1
OR10A2 WILD-TYPE | 13 | 24 | 13

'OR10A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.08 (Fisher's exact test), Q value = 1

Table S66. Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
OR10A2 MUTATED | 0 | 5 | 1
OR10A2 WILD-TYPE | 18 | 19 | 13

'OR10A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0383 (Fisher's exact test), Q value = 1

Table S67. Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
OR10A2 MUTATED | 0 | 1 | 3 | 1
OR10A2 WILD-TYPE | 18 | 11 | 6 | 7

Figure S4. Get High-res Image Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'OR10A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S68. Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
OR10A2 MUTATED | 0 | 0 | 5
OR10A2 WILD-TYPE | 4 | 18 | 20

'OR10A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.057 (Fisher's exact test), Q value = 1

Table S69. Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
OR10A2 MUTATED | 1 | 1 | 4
OR10A2 WILD-TYPE | 24 | 10 | 10

'OR10A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0482 (Fisher's exact test), Q value = 1

Table S70. Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
OR10A2 MUTATED | 3 | 2 | 1
OR10A2 WILD-TYPE | 5 | 17 | 22

Figure S5. Get High-res Image Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'OR10A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S71. Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
OR10A2 MUTATED | 1 | 1 | 4
OR10A2 WILD-TYPE | 20 | 8 | 16

'OR10A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S72. Gene #9: 'OR10A2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
OR10A2 MUTATED | 3 | 1 | 2
OR10A2 WILD-TYPE | 6 | 21 | 17

'OR10A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S73. Gene #10: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
OR10A7 MUTATED | 1 | 6 | 2
OR10A7 WILD-TYPE | 12 | 23 | 12

'OR10A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S74. Gene #10: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
OR10A7 MUTATED | 1 | 5 | 3
OR10A7 WILD-TYPE | 17 | 19 | 11

'OR10A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0971 (Fisher's exact test), Q value = 1

Table S75. Gene #10: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
OR10A7 MUTATED | 2 | 2 | 4 | 0
OR10A7 WILD-TYPE | 16 | 10 | 5 | 8

'OR10A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S76. Gene #10: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
OR10A7 MUTATED | 0 | 2 | 6
OR10A7 WILD-TYPE | 4 | 16 | 19

'OR10A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S77. Gene #10: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
OR10A7 MUTATED | 3 | 2 | 4
OR10A7 WILD-TYPE | 22 | 9 | 10

'OR10A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S78. Gene #10: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
OR10A7 MUTATED | 2 | 3 | 4
OR10A7 WILD-TYPE | 6 | 16 | 19

'OR10A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S79. Gene #10: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
OR10A7 MUTATED | 3 | 1 | 5
OR10A7 WILD-TYPE | 18 | 8 | 15

'OR10A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S80. Gene #10: 'OR10A7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
OR10A7 MUTATED | 3 | 3 | 3
OR10A7 WILD-TYPE | 6 | 19 | 16

'POP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S81. Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
POP5 MUTATED | 0 | 5 | 0
POP5 WILD-TYPE | 13 | 24 | 14

'POP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S82. Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
POP5 MUTATED | 0 | 4 | 1
POP5 WILD-TYPE | 18 | 20 | 13

'POP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0199 (Fisher's exact test), Q value = 1

Table S83. Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
POP5 MUTATED | 0 | 2 | 3 | 0
POP5 WILD-TYPE | 18 | 10 | 6 | 8

Figure S6. Get High-res Image Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'POP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S84. Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
POP5 MUTATED | 0 | 0 | 5
POP5 WILD-TYPE | 4 | 18 | 20

'POP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 1

Table S85. Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
POP5 MUTATED | 0 | 2 | 3
POP5 WILD-TYPE | 25 | 9 | 11

Figure S7. Get High-res Image Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'POP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S86. Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
POP5 MUTATED | 1 | 3 | 1
POP5 WILD-TYPE | 7 | 16 | 22

'POP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0919 (Fisher's exact test), Q value = 1

Table S87. Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
POP5 MUTATED | 0 | 1 | 4
POP5 WILD-TYPE | 21 | 8 | 16

'POP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0693 (Fisher's exact test), Q value = 1

Table S88. Gene #11: 'POP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
POP5 MUTATED | 2 | 0 | 3
POP5 WILD-TYPE | 7 | 22 | 16

'SRP14 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S89. Gene #12: 'SRP14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
SRP14 MUTATED | 1 | 4 | 2
SRP14 WILD-TYPE | 12 | 25 | 12

'SRP14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S90. Gene #12: 'SRP14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
SRP14 MUTATED | 2 | 3 | 2
SRP14 WILD-TYPE | 16 | 21 | 12

'SRP14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S91. Gene #12: 'SRP14 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
SRP14 MUTATED | 3 | 1 | 1 | 1
SRP14 WILD-TYPE | 15 | 11 | 8 | 7

'SRP14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S92. Gene #12: 'SRP14 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
SRP14 MUTATED | 1 | 3 | 2
SRP14 WILD-TYPE | 3 | 15 | 23

'SRP14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S93. Gene #12: 'SRP14 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
SRP14 MUTATED | 4 | 2 | 1
SRP14 WILD-TYPE | 21 | 9 | 13

'SRP14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S94. Gene #12: 'SRP14 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
SRP14 MUTATED | 0 | 4 | 3
SRP14 WILD-TYPE | 8 | 15 | 20

'SRP14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S95. Gene #12: 'SRP14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
SRP14 MUTATED | 2 | 3 | 2
SRP14 WILD-TYPE | 19 | 6 | 18

'SRP14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S96. Gene #12: 'SRP14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
SRP14 MUTATED | 0 | 3 | 4
SRP14 WILD-TYPE | 9 | 19 | 15

'WRN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S97. Gene #13: 'WRN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
WRN MUTATED | 2 | 3 | 0
WRN WILD-TYPE | 11 | 26 | 14

'WRN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S98. Gene #13: 'WRN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
WRN MUTATED | 1 | 3 | 1
WRN WILD-TYPE | 17 | 21 | 13

'WRN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S99. Gene #13: 'WRN MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
WRN MUTATED | 2 | 2 | 1 | 0
WRN WILD-TYPE | 16 | 10 | 8 | 8

'WRN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S100. Gene #13: 'WRN MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
WRN MUTATED | 0 | 1 | 4
WRN WILD-TYPE | 4 | 17 | 21

'WRN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S101. Gene #13: 'WRN MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
WRN MUTATED | 2 | 2 | 1
WRN WILD-TYPE | 23 | 9 | 13

'WRN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S102. Gene #13: 'WRN MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
WRN MUTATED | 1 | 2 | 2
WRN WILD-TYPE | 7 | 17 | 21

'WRN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S103. Gene #13: 'WRN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
WRN MUTATED | 2 | 1 | 2
WRN WILD-TYPE | 19 | 8 | 18

'WRN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S104. Gene #13: 'WRN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
WRN MUTATED | 1 | 2 | 2
WRN WILD-TYPE | 8 | 20 | 17

'TMEM40 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S105. Gene #14: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
TMEM40 MUTATED | 1 | 4 | 3
TMEM40 WILD-TYPE | 12 | 25 | 11

'TMEM40 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S106. Gene #14: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
TMEM40 MUTATED | 1 | 5 | 3
TMEM40 WILD-TYPE | 17 | 19 | 11

'TMEM40 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S107. Gene #14: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
TMEM40 MUTATED | 3 | 1 | 3 | 1
TMEM40 WILD-TYPE | 15 | 11 | 6 | 7

'TMEM40 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S108. Gene #14: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
TMEM40 MUTATED | 0 | 3 | 5
TMEM40 WILD-TYPE | 4 | 15 | 20

'TMEM40 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S109. Gene #14: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
TMEM40 MUTATED | 4 | 1 | 4
TMEM40 WILD-TYPE | 21 | 10 | 10

'TMEM40 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S110. Gene #14: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
TMEM40 MUTATED | 2 | 3 | 4
TMEM40 WILD-TYPE | 6 | 16 | 19

'TMEM40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S111. Gene #14: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
TMEM40 MUTATED | 4 | 0 | 5
TMEM40 WILD-TYPE | 17 | 9 | 15

'TMEM40 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S112. Gene #14: 'TMEM40 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
TMEM40 MUTATED | 2 | 4 | 3
TMEM40 WILD-TYPE | 7 | 18 | 16

'KRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0479 (Fisher's exact test), Q value = 1

Table S113. Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
KRAS MUTATED | 11 | 13 | 9
KRAS WILD-TYPE | 2 | 16 | 5

Figure S8. Get High-res Image Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.000979 (Fisher's exact test), Q value = 0.82

Table S114. Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
KRAS MUTATED | 13 | 7 | 12
KRAS WILD-TYPE | 5 | 17 | 2

Figure S9. Get High-res Image Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0506 (Fisher's exact test), Q value = 1

Table S115. Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
KRAS MUTATED | 14 | 4 | 3 | 4
KRAS WILD-TYPE | 4 | 8 | 6 | 4

'KRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0158 (Fisher's exact test), Q value = 1

Table S116. Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
KRAS MUTATED | 2 | 14 | 9
KRAS WILD-TYPE | 2 | 4 | 16

Figure S10. Get High-res Image Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'KRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0805 (Fisher's exact test), Q value = 1

Table S117. Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
KRAS MUTATED | 17 | 4 | 5
KRAS WILD-TYPE | 8 | 7 | 9

'KRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S118. Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
KRAS MUTATED | 2 | 9 | 15
KRAS WILD-TYPE | 6 | 10 | 8

'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S119. Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
KRAS MUTATED | 14 | 4 | 8
KRAS WILD-TYPE | 7 | 5 | 12

'KRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.286 (Fisher's exact test), Q value = 1

Table S120. Gene #15: 'KRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
KRAS MUTATED | 3 | 14 | 9
KRAS WILD-TYPE | 6 | 8 | 10

'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0713 (Fisher's exact test), Q value = 1

Table S121. Gene #16: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
TP53 MUTATED | 10 | 15 | 12
TP53 WILD-TYPE | 3 | 14 | 2

'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00522 (Fisher's exact test), Q value = 1

Table S122. Gene #16: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
TP53 MUTATED | 16 | 10 | 10
TP53 WILD-TYPE | 2 | 14 | 4

Figure S11. Get High-res Image Gene #16: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S123. Gene #16: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
TP53 MUTATED | 15 | 8 | 5 | 3
TP53 WILD-TYPE | 3 | 4 | 4 | 5

'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0992 (Fisher's exact test), Q value = 1

Table S124. Gene #16: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
TP53 MUTATED | 2 | 15 | 14
TP53 WILD-TYPE | 2 | 3 | 11

'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S125. Gene #16: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
TP53 MUTATED | 18 | 7 | 7
TP53 WILD-TYPE | 7 | 4 | 7

'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S126. Gene #16: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
TP53 MUTATED | 4 | 11 | 17
TP53 WILD-TYPE | 4 | 8 | 6

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S127. Gene #16: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
TP53 MUTATED | 16 | 5 | 11
TP53 WILD-TYPE | 5 | 4 | 9

'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.497 (Fisher's exact test), Q value = 1

Table S128. Gene #16: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
TP53 MUTATED | 5 | 16 | 11
TP53 WILD-TYPE | 4 | 6 | 8

'QRICH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0687 (Fisher's exact test), Q value = 1

Table S129. Gene #17: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
QRICH1 MUTATED | 0 | 6 | 0
QRICH1 WILD-TYPE | 13 | 23 | 14

'QRICH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S130. Gene #17: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
QRICH1 MUTATED | 0 | 4 | 3
QRICH1 WILD-TYPE | 18 | 20 | 11

'QRICH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S131. Gene #17: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
QRICH1 MUTATED | 1 | 3 | 1 | 2
QRICH1 WILD-TYPE | 17 | 9 | 8 | 6

'QRICH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0845 (Fisher's exact test), Q value = 1

Table S132. Gene #17: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
QRICH1 MUTATED | 2 | 1 | 4
QRICH1 WILD-TYPE | 2 | 17 | 21

'QRICH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S133. Gene #17: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
QRICH1 MUTATED | 3 | 3 | 1
QRICH1 WILD-TYPE | 22 | 8 | 13

'QRICH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S134. Gene #17: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
QRICH1 MUTATED | 1 | 5 | 1
QRICH1 WILD-TYPE | 7 | 14 | 22

'QRICH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.00445 (Fisher's exact test), Q value = 1

Table S135. Gene #17: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
QRICH1 MUTATED | 0 | 4 | 3
QRICH1 WILD-TYPE | 21 | 5 | 17

Figure S12. Get High-res Image Gene #17: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'QRICH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S136. Gene #17: 'QRICH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
QRICH1 MUTATED | 1 | 1 | 5
QRICH1 WILD-TYPE | 8 | 21 | 14

'ST6GALNAC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S137. Gene #18: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
ST6GALNAC5 MUTATED | 1 | 4 | 1
ST6GALNAC5 WILD-TYPE | 12 | 25 | 13

'ST6GALNAC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S138. Gene #18: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
ST6GALNAC5 MUTATED | 3 | 3 | 0
ST6GALNAC5 WILD-TYPE | 15 | 21 | 14

'ST6GALNAC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S139. Gene #18: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
ST6GALNAC5 MUTATED | 3 | 1 | 2 | 0
ST6GALNAC5 WILD-TYPE | 15 | 11 | 7 | 8

'ST6GALNAC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S140. Gene #18: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
ST6GALNAC5 MUTATED | 0 | 3 | 3
ST6GALNAC5 WILD-TYPE | 4 | 15 | 22

'ST6GALNAC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S141. Gene #18: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
ST6GALNAC5 MUTATED | 3 | 1 | 2
ST6GALNAC5 WILD-TYPE | 22 | 10 | 12

'ST6GALNAC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S142. Gene #18: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
ST6GALNAC5 MUTATED | 1 | 2 | 3
ST6GALNAC5 WILD-TYPE | 7 | 17 | 20

'ST6GALNAC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S143. Gene #18: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
ST6GALNAC5 MUTATED | 3 | 0 | 3
ST6GALNAC5 WILD-TYPE | 18 | 9 | 17

'ST6GALNAC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S144. Gene #18: 'ST6GALNAC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
ST6GALNAC5 MUTATED | 1 | 3 | 2
ST6GALNAC5 WILD-TYPE | 8 | 19 | 17

'TNFSF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S145. Gene #19: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
TNFSF9 MUTATED | 1 | 5 | 0
TNFSF9 WILD-TYPE | 12 | 24 | 14

'TNFSF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S146. Gene #19: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
TNFSF9 MUTATED | 1 | 3 | 2
TNFSF9 WILD-TYPE | 17 | 21 | 12

'TNFSF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S147. Gene #19: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
TNFSF9 MUTATED | 2 | 1 | 0 | 3
TNFSF9 WILD-TYPE | 16 | 11 | 9 | 5

'TNFSF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S148. Gene #19: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
TNFSF9 MUTATED | 2 | 2 | 2
TNFSF9 WILD-TYPE | 2 | 16 | 23

'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S149. Gene #19: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
TNFSF9 MUTATED | 4 | 0 | 2
TNFSF9 WILD-TYPE | 21 | 11 | 12

'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S150. Gene #19: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
TNFSF9 MUTATED | 1 | 3 | 2
TNFSF9 WILD-TYPE | 7 | 16 | 21

'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S151. Gene #19: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
TNFSF9 MUTATED | 1 | 3 | 2
TNFSF9 WILD-TYPE | 20 | 6 | 18

'TNFSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S152. Gene #19: 'TNFSF9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
TNFSF9 MUTATED | 1 | 2 | 3
TNFSF9 WILD-TYPE | 8 | 20 | 16

'CDKN2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S153. Gene #20: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
CDKN2A MUTATED | 3 | 5 | 5
CDKN2A WILD-TYPE | 10 | 24 | 9

'CDKN2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S154. Gene #20: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
CDKN2A MUTATED | 4 | 3 | 6
CDKN2A WILD-TYPE | 14 | 21 | 8

'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.599 (Fisher's exact test), Q value = 1

Table S155. Gene #20: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
CDKN2A MUTATED | 5 | 4 | 1 | 1
CDKN2A WILD-TYPE | 13 | 8 | 8 | 7

'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S156. Gene #20: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
CDKN2A MUTATED | 1 | 5 | 5
CDKN2A WILD-TYPE | 3 | 13 | 20

'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S157. Gene #20: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
CDKN2A MUTATED | 7 | 4 | 1
CDKN2A WILD-TYPE | 18 | 7 | 13

'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S158. Gene #20: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
CDKN2A MUTATED | 1 | 5 | 6
CDKN2A WILD-TYPE | 7 | 14 | 17

'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S159. Gene #20: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
CDKN2A MUTATED | 6 | 2 | 4
CDKN2A WILD-TYPE | 15 | 7 | 16

'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S160. Gene #20: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
CDKN2A MUTATED | 1 | 6 | 5
CDKN2A WILD-TYPE | 8 | 16 | 14

'SEH1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S161. Gene #21: 'SEH1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
SEH1L MUTATED | 1 | 6 | 1
SEH1L WILD-TYPE | 12 | 23 | 13

'SEH1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S162. Gene #21: 'SEH1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
SEH1L MUTATED | 1 | 5 | 2
SEH1L WILD-TYPE | 17 | 19 | 12

'SEH1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S163. Gene #21: 'SEH1L MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
SEH1L MUTATED | 2 | 2 | 3 | 1
SEH1L WILD-TYPE | 16 | 10 | 6 | 7

'SEH1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.608 (Fisher's exact test), Q value = 1

Table S164. Gene #21: 'SEH1L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
SEH1L MUTATED | 1 | 2 | 5
SEH1L WILD-TYPE | 3 | 16 | 20

'SEH1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S165. Gene #21: 'SEH1L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
SEH1L MUTATED | 3 | 2 | 3
SEH1L WILD-TYPE | 22 | 9 | 11

'SEH1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0889 (Fisher's exact test), Q value = 1

Table S166. Gene #21: 'SEH1L MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
SEH1L MUTATED | 2 | 5 | 1
SEH1L WILD-TYPE | 6 | 14 | 22

'SEH1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0339 (Fisher's exact test), Q value = 1

Table S167. Gene #21: 'SEH1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
SEH1L MUTATED | 1 | 4 | 3
SEH1L WILD-TYPE | 20 | 5 | 17

Figure S13. Get High-res Image Gene #21: 'SEH1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'SEH1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S168. Gene #21: 'SEH1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
SEH1L MUTATED | 2 | 1 | 5
SEH1L WILD-TYPE | 7 | 21 | 14

'SCD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S169. Gene #22: 'SCD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
SCD MUTATED | 1 | 6 | 1
SCD WILD-TYPE | 12 | 23 | 13

'SCD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S170. Gene #22: 'SCD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
SCD MUTATED | 1 | 4 | 3
SCD WILD-TYPE | 17 | 20 | 11

'SCD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.093 (Fisher's exact test), Q value = 1

Table S171. Gene #22: 'SCD MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
SCD MUTATED | 3 | 1 | 4 | 0
SCD WILD-TYPE | 15 | 11 | 5 | 8

'SCD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S172. Gene #22: 'SCD MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
SCD MUTATED | 0 | 3 | 5
SCD WILD-TYPE | 4 | 15 | 20

'SCD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.357 (Fisher's exact test), Q value = 1

Table S173. Gene #22: 'SCD MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
SCD MUTATED | 3 | 1 | 4
SCD WILD-TYPE | 22 | 10 | 10

'SCD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S174. Gene #22: 'SCD MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
SCD MUTATED | 2 | 3 | 3
SCD WILD-TYPE | 6 | 16 | 20

'SCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S175. Gene #22: 'SCD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
SCD MUTATED | 2 | 2 | 4
SCD WILD-TYPE | 19 | 7 | 16

'SCD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S176. Gene #22: 'SCD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
SCD MUTATED | 3 | 2 | 3
SCD WILD-TYPE | 6 | 20 | 16

'TMC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S177. Gene #23: 'TMC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
TMC4 MUTATED | 2 | 4 | 3
TMC4 WILD-TYPE | 11 | 25 | 11

'TMC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S178. Gene #23: 'TMC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
TMC4 MUTATED | 5 | 2 | 2
TMC4 WILD-TYPE | 13 | 22 | 12

'TMC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.39 (Fisher's exact test), Q value = 1

Table S179. Gene #23: 'TMC4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
TMC4 MUTATED | 5 | 2 | 0 | 1
TMC4 WILD-TYPE | 13 | 10 | 9 | 7

'TMC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S180. Gene #23: 'TMC4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
TMC4 MUTATED | 1 | 5 | 2
TMC4 WILD-TYPE | 3 | 13 | 23

'TMC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.136 (Fisher's exact test), Q value = 1

Table S181. Gene #23: 'TMC4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
TMC4 MUTATED | 6 | 2 | 0
TMC4 WILD-TYPE | 19 | 9 | 14

'TMC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S182. Gene #23: 'TMC4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
TMC4 MUTATED | 0 | 4 | 4
TMC4 WILD-TYPE | 8 | 15 | 19

'TMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S183. Gene #23: 'TMC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
TMC4 MUTATED | 4 | 2 | 2
TMC4 WILD-TYPE | 17 | 7 | 18

'TMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S184. Gene #23: 'TMC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
TMC4 MUTATED | 0 | 4 | 4
TMC4 WILD-TYPE | 9 | 18 | 15

'MED15 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S185. Gene #24: 'MED15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
MED15 MUTATED | 2 | 5 | 2
MED15 WILD-TYPE | 11 | 24 | 12

'MED15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.816 (Fisher's exact test), Q value = 1

Table S186. Gene #24: 'MED15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
MED15 MUTATED | 2 | 4 | 3
MED15 WILD-TYPE | 16 | 20 | 11

'MED15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S187. Gene #24: 'MED15 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
MED15 MUTATED | 5 | 1 | 2 | 1
MED15 WILD-TYPE | 13 | 11 | 7 | 7

'MED15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S188. Gene #24: 'MED15 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
MED15 MUTATED | 1 | 5 | 3
MED15 WILD-TYPE | 3 | 13 | 22

'MED15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S189. Gene #24: 'MED15 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
MED15 MUTATED | 6 | 1 | 2
MED15 WILD-TYPE | 19 | 10 | 12

'MED15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S190. Gene #24: 'MED15 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
MED15 MUTATED | 1 | 4 | 4
MED15 WILD-TYPE | 7 | 15 | 19

'MED15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S191. Gene #24: 'MED15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
MED15 MUTATED | 3 | 3 | 3
MED15 WILD-TYPE | 18 | 6 | 17

'MED15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S192. Gene #24: 'MED15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
MED15 MUTATED | 1 | 4 | 4
MED15 WILD-TYPE | 8 | 18 | 15

'TNFRSF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S193. Gene #25: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
TNFRSF9 MUTATED | 1 | 4 | 1
TNFRSF9 WILD-TYPE | 12 | 25 | 13

'TNFRSF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S194. Gene #25: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
TNFRSF9 MUTATED | 1 | 4 | 1
TNFRSF9 WILD-TYPE | 17 | 20 | 13

'TNFRSF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S195. Gene #25: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
TNFRSF9 MUTATED | 1 | 1 | 2 | 1
TNFRSF9 WILD-TYPE | 17 | 11 | 7 | 7

'TNFRSF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S196. Gene #25: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
TNFRSF9 MUTATED | 0 | 1 | 4
TNFRSF9 WILD-TYPE | 4 | 17 | 21

'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S197. Gene #25: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
TNFRSF9 MUTATED | 2 | 1 | 3
TNFRSF9 WILD-TYPE | 23 | 10 | 11

'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S198. Gene #25: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
TNFRSF9 MUTATED | 2 | 2 | 2
TNFRSF9 WILD-TYPE | 6 | 17 | 21

'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S199. Gene #25: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
TNFRSF9 MUTATED | 2 | 1 | 3
TNFRSF9 WILD-TYPE | 19 | 8 | 17

'TNFRSF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S200. Gene #25: 'TNFRSF9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
TNFRSF9 MUTATED | 2 | 2 | 2
TNFRSF9 WILD-TYPE | 7 | 20 | 17

'BRDT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S201. Gene #26: 'BRDT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
BRDT MUTATED | 1 | 6 | 1
BRDT WILD-TYPE | 12 | 23 | 13

'BRDT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S202. Gene #26: 'BRDT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
BRDT MUTATED | 1 | 5 | 2
BRDT WILD-TYPE | 17 | 19 | 12

'BRDT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S203. Gene #26: 'BRDT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
BRDT MUTATED | 2 | 1 | 3 | 1
BRDT WILD-TYPE | 16 | 11 | 6 | 7

'BRDT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S204. Gene #26: 'BRDT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
BRDT MUTATED | 0 | 2 | 5
BRDT WILD-TYPE | 4 | 16 | 20

'BRDT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0503 (Fisher's exact test), Q value = 1

Table S205. Gene #26: 'BRDT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
BRDT MUTATED | 3 | 0 | 5
BRDT WILD-TYPE | 22 | 11 | 9

'BRDT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S206. Gene #26: 'BRDT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
BRDT MUTATED | 2 | 4 | 2
BRDT WILD-TYPE | 6 | 15 | 21

'BRDT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S207. Gene #26: 'BRDT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
BRDT MUTATED | 2 | 1 | 5
BRDT WILD-TYPE | 19 | 8 | 15

'BRDT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S208. Gene #26: 'BRDT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
BRDT MUTATED | 2 | 2 | 4
BRDT WILD-TYPE | 7 | 20 | 15

'CXXC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S209. Gene #27: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
CXXC4 MUTATED | 2 | 2 | 1
CXXC4 WILD-TYPE | 11 | 27 | 13

'CXXC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S210. Gene #27: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
CXXC4 MUTATED | 1 | 3 | 2
CXXC4 WILD-TYPE | 17 | 21 | 12

'CXXC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S211. Gene #27: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
CXXC4 MUTATED | 3 | 1 | 1 | 1
CXXC4 WILD-TYPE | 15 | 11 | 8 | 7

'CXXC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S212. Gene #27: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
CXXC4 MUTATED | 1 | 2 | 3
CXXC4 WILD-TYPE | 3 | 16 | 22

'CXXC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S213. Gene #27: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
CXXC4 MUTATED | 4 | 1 | 1
CXXC4 WILD-TYPE | 21 | 10 | 13

'CXXC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S214. Gene #27: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
CXXC4 MUTATED | 1 | 1 | 4
CXXC4 WILD-TYPE | 7 | 18 | 19

'CXXC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S215. Gene #27: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
CXXC4 MUTATED | 3 | 1 | 2
CXXC4 WILD-TYPE | 18 | 8 | 18

'CXXC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S216. Gene #27: 'CXXC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
CXXC4 MUTATED | 1 | 4 | 1
CXXC4 WILD-TYPE | 8 | 18 | 18

'MBD3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S217. Gene #28: 'MBD3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
MBD3 MUTATED | 1 | 3 | 2
MBD3 WILD-TYPE | 12 | 26 | 12

'MBD3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S218. Gene #28: 'MBD3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
MBD3 MUTATED | 2 | 2 | 2
MBD3 WILD-TYPE | 16 | 22 | 12

'MBD3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S219. Gene #28: 'MBD3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
MBD3 MUTATED | 3 | 1 | 0 | 1
MBD3 WILD-TYPE | 15 | 11 | 9 | 7

'MBD3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S220. Gene #28: 'MBD3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
MBD3 MUTATED | 0 | 3 | 2
MBD3 WILD-TYPE | 4 | 15 | 23

'MBD3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S221. Gene #28: 'MBD3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
MBD3 MUTATED | 4 | 0 | 2
MBD3 WILD-TYPE | 21 | 11 | 12

'MBD3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S222. Gene #28: 'MBD3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
MBD3 MUTATED | 1 | 2 | 3
MBD3 WILD-TYPE | 7 | 17 | 20

'MBD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S223. Gene #28: 'MBD3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
MBD3 MUTATED | 3 | 1 | 2
MBD3 WILD-TYPE | 18 | 8 | 18

'MBD3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S224. Gene #28: 'MBD3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
MBD3 MUTATED | 1 | 3 | 2
MBD3 WILD-TYPE | 8 | 19 | 17

'TULP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S225. Gene #29: 'TULP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
TULP1 MUTATED | 1 | 5 | 0
TULP1 WILD-TYPE | 12 | 24 | 14

'TULP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S226. Gene #29: 'TULP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
TULP1 MUTATED | 1 | 4 | 1
TULP1 WILD-TYPE | 17 | 20 | 13

'TULP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S227. Gene #29: 'TULP1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
TULP1 MUTATED | 1 | 1 | 3 | 1
TULP1 WILD-TYPE | 17 | 11 | 6 | 7

'TULP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S228. Gene #29: 'TULP1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
TULP1 MUTATED | 0 | 1 | 5
TULP1 WILD-TYPE | 4 | 17 | 20

'TULP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.057 (Fisher's exact test), Q value = 1

Table S229. Gene #29: 'TULP1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
TULP1 MUTATED | 1 | 1 | 4
TULP1 WILD-TYPE | 24 | 10 | 10

'TULP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S230. Gene #29: 'TULP1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
TULP1 MUTATED | 3 | 1 | 2
TULP1 WILD-TYPE | 5 | 18 | 21

'TULP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S231. Gene #29: 'TULP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
TULP1 MUTATED | 1 | 1 | 4
TULP1 WILD-TYPE | 20 | 8 | 16

'TULP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00854 (Fisher's exact test), Q value = 1

Table S232. Gene #29: 'TULP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
TULP1 MUTATED | 4 | 1 | 1
TULP1 WILD-TYPE | 5 | 21 | 18

Figure S14. Get High-res Image Gene #29: 'TULP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PHF13 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S233. Gene #30: 'PHF13 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
PHF13 MUTATED | 1 | 3 | 0
PHF13 WILD-TYPE | 12 | 26 | 14

'PHF13 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0816 (Fisher's exact test), Q value = 1

Table S234. Gene #30: 'PHF13 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
PHF13 MUTATED | 0 | 4 | 0
PHF13 WILD-TYPE | 18 | 20 | 14

'PHF13 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S235. Gene #30: 'PHF13 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
PHF13 MUTATED | 0 | 2 | 1 | 1
PHF13 WILD-TYPE | 18 | 10 | 8 | 7

'PHF13 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S236. Gene #30: 'PHF13 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
PHF13 MUTATED | 1 | 0 | 3
PHF13 WILD-TYPE | 3 | 18 | 22

'PHF13 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S237. Gene #30: 'PHF13 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
PHF13 MUTATED | 1 | 2 | 1
PHF13 WILD-TYPE | 24 | 9 | 13

'PHF13 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S238. Gene #30: 'PHF13 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
PHF13 MUTATED | 1 | 2 | 1
PHF13 WILD-TYPE | 7 | 17 | 22

'PHF13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0922 (Fisher's exact test), Q value = 1

Table S239. Gene #30: 'PHF13 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
PHF13 MUTATED | 0 | 2 | 2
PHF13 WILD-TYPE | 21 | 7 | 18

'PHF13 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S240. Gene #30: 'PHF13 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
PHF13 MUTATED | 1 | 1 | 2
PHF13 WILD-TYPE | 8 | 21 | 17

'BHLHB9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S241. Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
BHLHB9 MUTATED | 2 | 1 | 2
BHLHB9 WILD-TYPE | 11 | 28 | 12

'BHLHB9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0507 (Fisher's exact test), Q value = 1

Table S242. Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
BHLHB9 MUTATED | 2 | 0 | 3
BHLHB9 WILD-TYPE | 16 | 24 | 11

'BHLHB9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S243. Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
BHLHB9 MUTATED | 4 | 0 | 0 | 0
BHLHB9 WILD-TYPE | 14 | 12 | 9 | 8

'BHLHB9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0485 (Fisher's exact test), Q value = 1

Table S244. Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
BHLHB9 MUTATED | 0 | 4 | 0
BHLHB9 WILD-TYPE | 4 | 14 | 25

Figure S15. Get High-res Image Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0892 (Fisher's exact test), Q value = 1

Table S245. Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
BHLHB9 MUTATED | 5 | 0 | 0
BHLHB9 WILD-TYPE | 20 | 11 | 14

'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.073 (Fisher's exact test), Q value = 1

Table S246. Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
BHLHB9 MUTATED | 0 | 0 | 5
BHLHB9 WILD-TYPE | 8 | 19 | 18

'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0353 (Fisher's exact test), Q value = 1

Table S247. Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
BHLHB9 MUTATED | 5 | 0 | 0
BHLHB9 WILD-TYPE | 16 | 9 | 20

Figure S16. Get High-res Image Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'BHLHB9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0364 (Fisher's exact test), Q value = 1

Table S248. Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
BHLHB9 MUTATED | 0 | 5 | 0
BHLHB9 WILD-TYPE | 9 | 17 | 19

Figure S17. Get High-res Image Gene #31: 'BHLHB9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PRDM8 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S249. Gene #32: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
PRDM8 MUTATED | 1 | 5 | 0
PRDM8 WILD-TYPE | 12 | 24 | 14

'PRDM8 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S250. Gene #32: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
PRDM8 MUTATED | 1 | 3 | 2
PRDM8 WILD-TYPE | 17 | 21 | 12

'PRDM8 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S251. Gene #32: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
PRDM8 MUTATED | 2 | 2 | 1 | 0
PRDM8 WILD-TYPE | 16 | 10 | 8 | 8

'PRDM8 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S252. Gene #32: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
PRDM8 MUTATED | 0 | 2 | 3
PRDM8 WILD-TYPE | 4 | 16 | 22

'PRDM8 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S253. Gene #32: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
PRDM8 MUTATED | 2 | 3 | 1
PRDM8 WILD-TYPE | 23 | 8 | 13

'PRDM8 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0806 (Fisher's exact test), Q value = 1

Table S254. Gene #32: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
PRDM8 MUTATED | 0 | 5 | 1
PRDM8 WILD-TYPE | 8 | 14 | 22

'PRDM8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S255. Gene #32: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
PRDM8 MUTATED | 1 | 2 | 3
PRDM8 WILD-TYPE | 20 | 7 | 17

'PRDM8 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0729 (Fisher's exact test), Q value = 1

Table S256. Gene #32: 'PRDM8 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
PRDM8 MUTATED | 0 | 1 | 5
PRDM8 WILD-TYPE | 9 | 21 | 14

'SMAD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S257. Gene #33: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
SMAD4 MUTATED | 5 | 4 | 1
SMAD4 WILD-TYPE | 8 | 25 | 13

'SMAD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0402 (Fisher's exact test), Q value = 1

Table S258. Gene #33: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
SMAD4 MUTATED | 4 | 1 | 5
SMAD4 WILD-TYPE | 14 | 23 | 9

Figure S18. Get High-res Image Gene #33: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S259. Gene #33: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
SMAD4 MUTATED | 6 | 2 | 0 | 1
SMAD4 WILD-TYPE | 12 | 10 | 9 | 7

'SMAD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S260. Gene #33: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
SMAD4 MUTATED | 0 | 6 | 3
SMAD4 WILD-TYPE | 4 | 12 | 22

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0725 (Fisher's exact test), Q value = 1

Table S261. Gene #33: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
SMAD4 MUTATED | 7 | 2 | 0
SMAD4 WILD-TYPE | 18 | 9 | 14

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.335 (Fisher's exact test), Q value = 1

Table S262. Gene #33: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
SMAD4 MUTATED | 0 | 3 | 6
SMAD4 WILD-TYPE | 8 | 16 | 17

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S263. Gene #33: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
SMAD4 MUTATED | 6 | 2 | 1
SMAD4 WILD-TYPE | 15 | 7 | 19

'SMAD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S264. Gene #33: 'SMAD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
SMAD4 MUTATED | 0 | 6 | 3
SMAD4 WILD-TYPE | 9 | 16 | 16

'C14ORF43 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S265. Gene #34: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
C14ORF43 MUTATED | 1 | 5 | 1
C14ORF43 WILD-TYPE | 12 | 24 | 13

'C14ORF43 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S266. Gene #34: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
C14ORF43 MUTATED | 1 | 2 | 4
C14ORF43 WILD-TYPE | 17 | 22 | 10

'C14ORF43 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S267. Gene #34: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
C14ORF43 MUTATED | 2 | 1 | 1 | 3
C14ORF43 WILD-TYPE | 16 | 11 | 8 | 5

'C14ORF43 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S268. Gene #34: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
C14ORF43 MUTATED | 1 | 3 | 3
C14ORF43 WILD-TYPE | 3 | 15 | 22

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S269. Gene #34: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
C14ORF43 MUTATED | 4 | 1 | 2
C14ORF43 WILD-TYPE | 21 | 10 | 12

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S270. Gene #34: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
C14ORF43 MUTATED | 1 | 3 | 3
C14ORF43 WILD-TYPE | 7 | 16 | 20

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S271. Gene #34: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
C14ORF43 MUTATED | 2 | 2 | 3
C14ORF43 WILD-TYPE | 19 | 7 | 17

'C14ORF43 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S272. Gene #34: 'C14ORF43 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
C14ORF43 MUTATED | 2 | 2 | 3
C14ORF43 WILD-TYPE | 7 | 20 | 16

'MEPCE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S273. Gene #35: 'MEPCE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
MEPCE MUTATED | 1 | 6 | 0
MEPCE WILD-TYPE | 12 | 23 | 14

'MEPCE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S274. Gene #35: 'MEPCE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
MEPCE MUTATED | 1 | 4 | 2
MEPCE WILD-TYPE | 17 | 20 | 12

'MEPCE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S275. Gene #35: 'MEPCE MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
MEPCE MUTATED | 2 | 1 | 3 | 1
MEPCE WILD-TYPE | 16 | 11 | 6 | 7

'MEPCE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S276. Gene #35: 'MEPCE MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
MEPCE MUTATED | 0 | 2 | 5
MEPCE WILD-TYPE | 4 | 16 | 20

'MEPCE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S277. Gene #35: 'MEPCE MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
MEPCE MUTATED | 2 | 1 | 4
MEPCE WILD-TYPE | 23 | 10 | 10

'MEPCE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0603 (Fisher's exact test), Q value = 1

Table S278. Gene #35: 'MEPCE MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
MEPCE MUTATED | 3 | 3 | 1
MEPCE WILD-TYPE | 5 | 16 | 22

'MEPCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S279. Gene #35: 'MEPCE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
MEPCE MUTATED | 1 | 1 | 5
MEPCE WILD-TYPE | 20 | 8 | 15

'MEPCE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0871 (Fisher's exact test), Q value = 1

Table S280. Gene #35: 'MEPCE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
MEPCE MUTATED | 3 | 1 | 3
MEPCE WILD-TYPE | 6 | 21 | 16

'HVCN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S281. Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
HVCN1 MUTATED | 1 | 3 | 0
HVCN1 WILD-TYPE | 12 | 26 | 14

'HVCN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S282. Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
HVCN1 MUTATED | 1 | 2 | 1
HVCN1 WILD-TYPE | 17 | 22 | 13

'HVCN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0397 (Fisher's exact test), Q value = 1

Table S283. Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
HVCN1 MUTATED | 1 | 0 | 3 | 0
HVCN1 WILD-TYPE | 17 | 12 | 6 | 8

Figure S19. Get High-res Image Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'HVCN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S284. Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
HVCN1 MUTATED | 0 | 1 | 3
HVCN1 WILD-TYPE | 4 | 17 | 22

'HVCN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S285. Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
HVCN1 MUTATED | 1 | 0 | 3
HVCN1 WILD-TYPE | 24 | 11 | 11

'HVCN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0789 (Fisher's exact test), Q value = 1

Table S286. Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
HVCN1 MUTATED | 2 | 0 | 2
HVCN1 WILD-TYPE | 6 | 19 | 21

'HVCN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S287. Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
HVCN1 MUTATED | 1 | 0 | 3
HVCN1 WILD-TYPE | 20 | 9 | 17

'HVCN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0155 (Fisher's exact test), Q value = 1

Table S288. Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
HVCN1 MUTATED | 3 | 1 | 0
HVCN1 WILD-TYPE | 6 | 21 | 19

Figure S20. Get High-res Image Gene #36: 'HVCN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FOXP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S289. Gene #37: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
FOXP2 MUTATED | 2 | 5 | 1
FOXP2 WILD-TYPE | 11 | 24 | 13

'FOXP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S290. Gene #37: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
FOXP2 MUTATED | 2 | 5 | 1
FOXP2 WILD-TYPE | 16 | 19 | 13

'FOXP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S291. Gene #37: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
FOXP2 MUTATED | 2 | 1 | 3 | 1
FOXP2 WILD-TYPE | 16 | 11 | 6 | 7

'FOXP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S292. Gene #37: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
FOXP2 MUTATED | 0 | 2 | 5
FOXP2 WILD-TYPE | 4 | 16 | 20

'FOXP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0503 (Fisher's exact test), Q value = 1

Table S293. Gene #37: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
FOXP2 MUTATED | 3 | 0 | 5
FOXP2 WILD-TYPE | 22 | 11 | 9

'FOXP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S294. Gene #37: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
FOXP2 MUTATED | 3 | 2 | 3
FOXP2 WILD-TYPE | 5 | 17 | 20

'FOXP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.275 (Fisher's exact test), Q value = 1

Table S295. Gene #37: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
FOXP2 MUTATED | 3 | 0 | 5
FOXP2 WILD-TYPE | 18 | 9 | 15

'FOXP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S296. Gene #37: 'FOXP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
FOXP2 MUTATED | 3 | 3 | 2
FOXP2 WILD-TYPE | 6 | 19 | 17

'GRIN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S297. Gene #38: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
GRIN1 MUTATED | 1 | 4 | 0
GRIN1 WILD-TYPE | 12 | 25 | 14

'GRIN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S298. Gene #38: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
GRIN1 MUTATED | 1 | 2 | 2
GRIN1 WILD-TYPE | 17 | 22 | 12

'GRIN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0932 (Fisher's exact test), Q value = 1

Table S299. Gene #38: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
GRIN1 MUTATED | 2 | 0 | 3 | 0
GRIN1 WILD-TYPE | 16 | 12 | 6 | 8

'GRIN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S300. Gene #38: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
GRIN1 MUTATED | 0 | 2 | 3
GRIN1 WILD-TYPE | 4 | 16 | 22

'GRIN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S301. Gene #38: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
GRIN1 MUTATED | 2 | 0 | 3
GRIN1 WILD-TYPE | 23 | 11 | 11

'GRIN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S302. Gene #38: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
GRIN1 MUTATED | 1 | 2 | 2
GRIN1 WILD-TYPE | 7 | 17 | 21

'GRIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S303. Gene #38: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
GRIN1 MUTATED | 1 | 1 | 3
GRIN1 WILD-TYPE | 20 | 8 | 17

'GRIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S304. Gene #38: 'GRIN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
GRIN1 MUTATED | 2 | 1 | 2
GRIN1 WILD-TYPE | 7 | 21 | 17

'MAGEA10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S305. Gene #39: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
MAGEA10 MUTATED | 0 | 4 | 0
MAGEA10 WILD-TYPE | 13 | 25 | 14

'MAGEA10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S306. Gene #39: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
MAGEA10 MUTATED | 0 | 3 | 1
MAGEA10 WILD-TYPE | 18 | 21 | 13

'MAGEA10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0843 (Fisher's exact test), Q value = 1

Table S307. Gene #39: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
MAGEA10 MUTATED | 0 | 2 | 2 | 0
MAGEA10 WILD-TYPE | 18 | 10 | 7 | 8

'MAGEA10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S308. Gene #39: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
MAGEA10 MUTATED | 0 | 0 | 4
MAGEA10 WILD-TYPE | 4 | 18 | 21

'MAGEA10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0728 (Fisher's exact test), Q value = 1

Table S309. Gene #39: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
MAGEA10 MUTATED | 0 | 2 | 2
MAGEA10 WILD-TYPE | 25 | 9 | 12

'MAGEA10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S310. Gene #39: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
MAGEA10 MUTATED | 1 | 2 | 1
MAGEA10 WILD-TYPE | 7 | 17 | 22

'MAGEA10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S311. Gene #39: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
MAGEA10 MUTATED | 0 | 1 | 3
MAGEA10 WILD-TYPE | 21 | 8 | 17

'MAGEA10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0591 (Fisher's exact test), Q value = 1

Table S312. Gene #39: 'MAGEA10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
MAGEA10 MUTATED | 2 | 0 | 2
MAGEA10 WILD-TYPE | 7 | 22 | 17

'C16ORF79 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S313. Gene #40: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
C16ORF79 MUTATED | 1 | 2 | 1
C16ORF79 WILD-TYPE | 12 | 27 | 13

'C16ORF79 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S314. Gene #40: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
C16ORF79 MUTATED | 1 | 2 | 1
C16ORF79 WILD-TYPE | 17 | 22 | 13

'C16ORF79 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S315. Gene #40: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
C16ORF79 MUTATED | 2 | 1 | 1 | 0
C16ORF79 WILD-TYPE | 16 | 11 | 8 | 8

'C16ORF79 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S316. Gene #40: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
C16ORF79 MUTATED | 0 | 2 | 2
C16ORF79 WILD-TYPE | 4 | 16 | 23

'C16ORF79 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S317. Gene #40: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
C16ORF79 MUTATED | 2 | 1 | 1
C16ORF79 WILD-TYPE | 23 | 10 | 13

'C16ORF79 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S318. Gene #40: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
C16ORF79 MUTATED | 0 | 2 | 2
C16ORF79 WILD-TYPE | 8 | 17 | 21

'C16ORF79 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S319. Gene #40: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
C16ORF79 MUTATED | 2 | 0 | 2
C16ORF79 WILD-TYPE | 19 | 9 | 18

'C16ORF79 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S320. Gene #40: 'C16ORF79 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
C16ORF79 MUTATED | 0 | 2 | 2
C16ORF79 WILD-TYPE | 9 | 20 | 17

'ERF MUTATION STATUS' versus 'CN_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S321. Gene #41: 'ERF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
ERF MUTATED | 0 | 5 | 1
ERF WILD-TYPE | 13 | 24 | 13

'ERF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S322. Gene #41: 'ERF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
ERF MUTATED | 0 | 4 | 2
ERF WILD-TYPE | 18 | 20 | 12

'ERF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S323. Gene #41: 'ERF MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
ERF MUTATED | 1 | 1 | 3 | 0
ERF WILD-TYPE | 17 | 11 | 6 | 8

'ERF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S324. Gene #41: 'ERF MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
ERF MUTATED | 0 | 1 | 4
ERF WILD-TYPE | 4 | 17 | 21

'ERF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0759 (Fisher's exact test), Q value = 1

Table S325. Gene #41: 'ERF MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
ERF MUTATED | 2 | 0 | 4
ERF WILD-TYPE | 23 | 11 | 10

'ERF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S326. Gene #41: 'ERF MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
ERF MUTATED | 2 | 3 | 1
ERF WILD-TYPE | 6 | 16 | 22

'ERF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S327. Gene #41: 'ERF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
ERF MUTATED | 1 | 1 | 4
ERF WILD-TYPE | 20 | 8 | 16

'ERF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S328. Gene #41: 'ERF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
ERF MUTATED | 2 | 1 | 3
ERF WILD-TYPE | 7 | 21 | 16

'IFNGR2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S329. Gene #42: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
IFNGR2 MUTATED | 1 | 3 | 0
IFNGR2 WILD-TYPE | 12 | 26 | 14

'IFNGR2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S330. Gene #42: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
IFNGR2 MUTATED | 0 | 2 | 2
IFNGR2 WILD-TYPE | 18 | 22 | 12

'IFNGR2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S331. Gene #42: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
IFNGR2 MUTATED | 1 | 0 | 1 | 2
IFNGR2 WILD-TYPE | 17 | 12 | 8 | 6

'IFNGR2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S332. Gene #42: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
IFNGR2 MUTATED | 1 | 1 | 2
IFNGR2 WILD-TYPE | 3 | 17 | 23

'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S333. Gene #42: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
IFNGR2 MUTATED | 2 | 0 | 2
IFNGR2 WILD-TYPE | 23 | 11 | 12

'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S334. Gene #42: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
IFNGR2 MUTATED | 1 | 2 | 1
IFNGR2 WILD-TYPE | 7 | 17 | 22

'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S335. Gene #42: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
IFNGR2 MUTATED | 1 | 1 | 2
IFNGR2 WILD-TYPE | 20 | 8 | 18

'IFNGR2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S336. Gene #42: 'IFNGR2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
IFNGR2 MUTATED | 1 | 1 | 2
IFNGR2 WILD-TYPE | 8 | 21 | 17

'OLIG3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.7 (Fisher's exact test), Q value = 1

Table S337. Gene #43: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
OLIG3 MUTATED | 2 | 2 | 1
OLIG3 WILD-TYPE | 11 | 27 | 13

'OLIG3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.593 (Fisher's exact test), Q value = 1

Table S338. Gene #43: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
OLIG3 MUTATED | 2 | 1 | 2
OLIG3 WILD-TYPE | 16 | 23 | 12

'OLIG3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S339. Gene #43: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
OLIG3 MUTATED | 4 | 0 | 0 | 1
OLIG3 WILD-TYPE | 14 | 12 | 9 | 7

'OLIG3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0191 (Fisher's exact test), Q value = 1

Table S340. Gene #43: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
OLIG3 MUTATED | 1 | 4 | 0
OLIG3 WILD-TYPE | 3 | 14 | 25

Figure S21. Get High-res Image Gene #43: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

'OLIG3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0892 (Fisher's exact test), Q value = 1

Table S341. Gene #43: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
OLIG3 MUTATED | 5 | 0 | 0
OLIG3 WILD-TYPE | 20 | 11 | 14

'OLIG3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.367 (Fisher's exact test), Q value = 1

Table S342. Gene #43: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
OLIG3 MUTATED | 0 | 1 | 4
OLIG3 WILD-TYPE | 8 | 18 | 19

'OLIG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S343. Gene #43: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
OLIG3 MUTATED | 3 | 2 | 0
OLIG3 WILD-TYPE | 18 | 7 | 20

'OLIG3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S344. Gene #43: 'OLIG3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
OLIG3 MUTATED | 0 | 4 | 1
OLIG3 WILD-TYPE | 9 | 18 | 18

'NDEL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S345. Gene #44: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
NDEL1 MUTATED | 1 | 3 | 0
NDEL1 WILD-TYPE | 12 | 26 | 14

'NDEL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S346. Gene #44: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
NDEL1 MUTATED | 1 | 2 | 1
NDEL1 WILD-TYPE | 17 | 22 | 13

'NDEL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0397 (Fisher's exact test), Q value = 1

Table S347. Gene #44: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
NDEL1 MUTATED | 1 | 0 | 3 | 0
NDEL1 WILD-TYPE | 17 | 12 | 6 | 8

Figure S22. Get High-res Image Gene #44: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'NDEL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S348. Gene #44: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
NDEL1 MUTATED | 0 | 1 | 3
NDEL1 WILD-TYPE | 4 | 17 | 22

'NDEL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S349. Gene #44: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
NDEL1 MUTATED | 1 | 0 | 3
NDEL1 WILD-TYPE | 24 | 11 | 11

'NDEL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S350. Gene #44: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
NDEL1 MUTATED | 1 | 1 | 2
NDEL1 WILD-TYPE | 7 | 18 | 21

'NDEL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S351. Gene #44: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
NDEL1 MUTATED | 1 | 0 | 3
NDEL1 WILD-TYPE | 20 | 9 | 17

'NDEL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S352. Gene #44: 'NDEL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
NDEL1 MUTATED | 2 | 1 | 1
NDEL1 WILD-TYPE | 7 | 21 | 18

'EGR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.691 (Fisher's exact test), Q value = 1

Table S353. Gene #45: 'EGR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
EGR1 MUTATED | 1 | 4 | 3
EGR1 WILD-TYPE | 12 | 25 | 11

'EGR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S354. Gene #45: 'EGR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
EGR1 MUTATED | 2 | 3 | 3
EGR1 WILD-TYPE | 16 | 21 | 11

'EGR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S355. Gene #45: 'EGR1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
EGR1 MUTATED | 3 | 2 | 1 | 0
EGR1 WILD-TYPE | 15 | 10 | 8 | 8

'EGR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S356. Gene #45: 'EGR1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
EGR1 MUTATED | 0 | 3 | 3
EGR1 WILD-TYPE | 4 | 15 | 22

'EGR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S357. Gene #45: 'EGR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
EGR1 MUTATED | 4 | 3 | 1
EGR1 WILD-TYPE | 21 | 8 | 13

'EGR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S358. Gene #45: 'EGR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
EGR1 MUTATED | 1 | 4 | 3
EGR1 WILD-TYPE | 7 | 15 | 20

'EGR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S359. Gene #45: 'EGR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
EGR1 MUTATED | 3 | 3 | 2
EGR1 WILD-TYPE | 18 | 6 | 18

'EGR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S360. Gene #45: 'EGR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
EGR1 MUTATED | 1 | 3 | 4
EGR1 WILD-TYPE | 8 | 19 | 15

'CDH3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S361. Gene #46: 'CDH3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
CDH3 MUTATED | 0 | 3 | 1
CDH3 WILD-TYPE | 13 | 26 | 13

'CDH3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S362. Gene #46: 'CDH3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
CDH3 MUTATED | 0 | 2 | 2
CDH3 WILD-TYPE | 18 | 22 | 12

'CDH3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0222 (Fisher's exact test), Q value = 1

Table S363. Gene #46: 'CDH3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
CDH3 MUTATED | 0 | 3 | 0 | 0
CDH3 WILD-TYPE | 18 | 9 | 9 | 8

Figure S23. Get High-res Image Gene #46: 'CDH3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'CDH3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S364. Gene #46: 'CDH3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
CDH3 MUTATED | 0 | 0 | 3
CDH3 WILD-TYPE | 4 | 18 | 22

'CDH3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0511 (Fisher's exact test), Q value = 1

Table S365. Gene #46: 'CDH3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
CDH3 MUTATED | 1 | 3 | 0
CDH3 WILD-TYPE | 24 | 8 | 14

'CDH3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S366. Gene #46: 'CDH3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
CDH3 MUTATED | 0 | 3 | 1
CDH3 WILD-TYPE | 8 | 16 | 22

'CDH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S367. Gene #46: 'CDH3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
CDH3 MUTATED | 1 | 0 | 3
CDH3 WILD-TYPE | 20 | 9 | 17

'CDH3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S368. Gene #46: 'CDH3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
CDH3 MUTATED | 0 | 1 | 3
CDH3 WILD-TYPE | 9 | 21 | 16

'PCDHAC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S369. Gene #47: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
PCDHAC2 MUTATED | 4 | 3 | 2
PCDHAC2 WILD-TYPE | 9 | 26 | 12

'PCDHAC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0367 (Fisher's exact test), Q value = 1

Table S370. Gene #47: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
PCDHAC2 MUTATED | 6 | 1 | 2
PCDHAC2 WILD-TYPE | 12 | 23 | 12

Figure S24. Get High-res Image Gene #47: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PCDHAC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S371. Gene #47: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
PCDHAC2 MUTATED | 4 | 1 | 2 | 1
PCDHAC2 WILD-TYPE | 14 | 11 | 7 | 7

'PCDHAC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S372. Gene #47: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
PCDHAC2 MUTATED | 0 | 5 | 3
PCDHAC2 WILD-TYPE | 4 | 13 | 22

'PCDHAC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S373. Gene #47: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
PCDHAC2 MUTATED | 5 | 1 | 2
PCDHAC2 WILD-TYPE | 20 | 10 | 12

'PCDHAC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S374. Gene #47: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
PCDHAC2 MUTATED | 1 | 3 | 4
PCDHAC2 WILD-TYPE | 7 | 16 | 19

'PCDHAC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S375. Gene #47: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
PCDHAC2 MUTATED | 4 | 2 | 2
PCDHAC2 WILD-TYPE | 17 | 7 | 18

'PCDHAC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S376. Gene #47: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
PCDHAC2 MUTATED | 1 | 4 | 3
PCDHAC2 WILD-TYPE | 8 | 18 | 16

'ZFP36 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S377. Gene #48: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
ZFP36 MUTATED | 0 | 3 | 1
ZFP36 WILD-TYPE | 13 | 26 | 13

'ZFP36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S378. Gene #48: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
ZFP36 MUTATED | 0 | 3 | 1
ZFP36 WILD-TYPE | 18 | 21 | 13

'ZFP36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S379. Gene #48: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
ZFP36 MUTATED | 0 | 1 | 2 | 0
ZFP36 WILD-TYPE | 18 | 11 | 7 | 8

'ZFP36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S380. Gene #48: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
ZFP36 MUTATED | 0 | 0 | 3
ZFP36 WILD-TYPE | 4 | 18 | 22

'ZFP36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S381. Gene #48: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
ZFP36 MUTATED | 1 | 1 | 2
ZFP36 WILD-TYPE | 24 | 10 | 12

'ZFP36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S382. Gene #48: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
ZFP36 MUTATED | 0 | 3 | 1
ZFP36 WILD-TYPE | 8 | 16 | 22

'ZFP36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S383. Gene #48: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
ZFP36 MUTATED | 1 | 0 | 3
ZFP36 WILD-TYPE | 20 | 9 | 17

'ZFP36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S384. Gene #48: 'ZFP36 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
ZFP36 MUTATED | 0 | 1 | 3
ZFP36 WILD-TYPE | 9 | 21 | 16

'NR4A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.329 (Fisher's exact test), Q value = 1

Table S385. Gene #49: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
NR4A3 MUTATED | 2 | 3 | 0
NR4A3 WILD-TYPE | 11 | 26 | 14

'NR4A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0507 (Fisher's exact test), Q value = 1

Table S386. Gene #49: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
NR4A3 MUTATED | 2 | 0 | 3
NR4A3 WILD-TYPE | 16 | 24 | 11

'NR4A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S387. Gene #49: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
NR4A3 MUTATED | 3 | 1 | 1 | 0
NR4A3 WILD-TYPE | 15 | 11 | 8 | 8

'NR4A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S388. Gene #49: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
NR4A3 MUTATED | 0 | 3 | 2
NR4A3 WILD-TYPE | 4 | 15 | 23

'NR4A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S389. Gene #49: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
NR4A3 MUTATED | 3 | 1 | 1
NR4A3 WILD-TYPE | 22 | 10 | 13

'NR4A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S390. Gene #49: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
NR4A3 MUTATED | 0 | 2 | 3
NR4A3 WILD-TYPE | 8 | 17 | 20

'NR4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S391. Gene #49: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
NR4A3 MUTATED | 2 | 1 | 2
NR4A3 WILD-TYPE | 19 | 8 | 18

'NR4A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S392. Gene #49: 'NR4A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
NR4A3 MUTATED | 1 | 2 | 2
NR4A3 WILD-TYPE | 8 | 20 | 17

'RAB11FIP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S393. Gene #50: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
RAB11FIP5 MUTATED | 0 | 3 | 2
RAB11FIP5 WILD-TYPE | 13 | 26 | 12

'RAB11FIP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S394. Gene #50: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
RAB11FIP5 MUTATED | 0 | 3 | 2
RAB11FIP5 WILD-TYPE | 18 | 21 | 12

'RAB11FIP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S395. Gene #50: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
RAB11FIP5 MUTATED | 1 | 1 | 2 | 0
RAB11FIP5 WILD-TYPE | 17 | 11 | 7 | 8

'RAB11FIP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S396. Gene #50: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
RAB11FIP5 MUTATED | 0 | 1 | 3
RAB11FIP5 WILD-TYPE | 4 | 17 | 22

'RAB11FIP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S397. Gene #50: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
RAB11FIP5 MUTATED | 2 | 1 | 2
RAB11FIP5 WILD-TYPE | 23 | 10 | 12

'RAB11FIP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S398. Gene #50: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
RAB11FIP5 MUTATED | 1 | 2 | 2
RAB11FIP5 WILD-TYPE | 7 | 17 | 21

'RAB11FIP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S399. Gene #50: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
RAB11FIP5 MUTATED | 2 | 0 | 3
RAB11FIP5 WILD-TYPE | 19 | 9 | 17

'RAB11FIP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S400. Gene #50: 'RAB11FIP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
RAB11FIP5 MUTATED | 1 | 2 | 2
RAB11FIP5 WILD-TYPE | 8 | 20 | 17

'OTUD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.205 (Fisher's exact test), Q value = 1

Table S401. Gene #51: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
OTUD4 MUTATED | 3 | 4 | 0
OTUD4 WILD-TYPE | 10 | 25 | 14

'OTUD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S402. Gene #51: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
OTUD4 MUTATED | 2 | 3 | 2
OTUD4 WILD-TYPE | 16 | 21 | 12

'OTUD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 1

Table S403. Gene #51: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
OTUD4 MUTATED | 3 | 1 | 3 | 0
OTUD4 WILD-TYPE | 15 | 11 | 6 | 8

'OTUD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S404. Gene #51: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
OTUD4 MUTATED | 0 | 3 | 4
OTUD4 WILD-TYPE | 4 | 15 | 21

'OTUD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S405. Gene #51: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
OTUD4 MUTATED | 3 | 1 | 3
OTUD4 WILD-TYPE | 22 | 10 | 11

'OTUD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S406. Gene #51: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
OTUD4 MUTATED | 1 | 3 | 3
OTUD4 WILD-TYPE | 7 | 16 | 20

'OTUD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S407. Gene #51: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
OTUD4 MUTATED | 2 | 1 | 4
OTUD4 WILD-TYPE | 19 | 8 | 16

'OTUD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S408. Gene #51: 'OTUD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
OTUD4 MUTATED | 2 | 2 | 3
OTUD4 WILD-TYPE | 7 | 20 | 16

'PPARGC1B MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S409. Gene #52: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
PPARGC1B MUTATED | 1 | 4 | 1
PPARGC1B WILD-TYPE | 12 | 25 | 13

'PPARGC1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.592 (Fisher's exact test), Q value = 1

Table S410. Gene #52: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
PPARGC1B MUTATED | 1 | 4 | 2
PPARGC1B WILD-TYPE | 17 | 20 | 12

'PPARGC1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.938 (Fisher's exact test), Q value = 1

Table S411. Gene #52: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
PPARGC1B MUTATED | 2 | 2 | 2 | 1
PPARGC1B WILD-TYPE | 16 | 10 | 7 | 7

'PPARGC1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S412. Gene #52: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
PPARGC1B MUTATED | 1 | 2 | 4
PPARGC1B WILD-TYPE | 3 | 16 | 21

'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.873 (Fisher's exact test), Q value = 1

Table S413. Gene #52: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
PPARGC1B MUTATED | 3 | 2 | 2
PPARGC1B WILD-TYPE | 22 | 9 | 12

'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S414. Gene #52: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
PPARGC1B MUTATED | 0 | 4 | 3
PPARGC1B WILD-TYPE | 8 | 15 | 20

'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.086 (Fisher's exact test), Q value = 1

Table S415. Gene #52: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
PPARGC1B MUTATED | 1 | 3 | 3
PPARGC1B WILD-TYPE | 20 | 6 | 17

'PPARGC1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S416. Gene #52: 'PPARGC1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
PPARGC1B MUTATED | 1 | 2 | 4
PPARGC1B WILD-TYPE | 8 | 20 | 15

'PDZD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.57 (Fisher's exact test), Q value = 1

Table S417. Gene #53: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
PDZD2 MUTATED | 2 | 6 | 1
PDZD2 WILD-TYPE | 11 | 23 | 13

'PDZD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S418. Gene #53: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
PDZD2 MUTATED | 2 | 3 | 4
PDZD2 WILD-TYPE | 16 | 21 | 10

'PDZD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S419. Gene #53: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
PDZD2 MUTATED | 2 | 3 | 3 | 1
PDZD2 WILD-TYPE | 16 | 9 | 6 | 7

'PDZD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.534 (Fisher's exact test), Q value = 1

Table S420. Gene #53: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
PDZD2 MUTATED | 1 | 2 | 6
PDZD2 WILD-TYPE | 3 | 16 | 19

'PDZD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S421. Gene #53: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
PDZD2 MUTATED | 3 | 3 | 3
PDZD2 WILD-TYPE | 22 | 8 | 11

'PDZD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.191 (Fisher's exact test), Q value = 1

Table S422. Gene #53: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
PDZD2 MUTATED | 1 | 6 | 2
PDZD2 WILD-TYPE | 7 | 13 | 21

'PDZD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0688 (Fisher's exact test), Q value = 1

Table S423. Gene #53: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
PDZD2 MUTATED | 1 | 3 | 5
PDZD2 WILD-TYPE | 20 | 6 | 15

'PDZD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0558 (Fisher's exact test), Q value = 1

Table S424. Gene #53: 'PDZD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
PDZD2 MUTATED | 2 | 1 | 6
PDZD2 WILD-TYPE | 7 | 21 | 13

'NPNT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S425. Gene #54: 'NPNT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
NPNT MUTATED | 2 | 2 | 0
NPNT WILD-TYPE | 11 | 27 | 14

'NPNT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S426. Gene #54: 'NPNT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
NPNT MUTATED | 1 | 2 | 1
NPNT WILD-TYPE | 17 | 22 | 13

'NPNT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S427. Gene #54: 'NPNT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
NPNT MUTATED | 2 | 0 | 1 | 1
NPNT WILD-TYPE | 16 | 12 | 8 | 7

'NPNT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S428. Gene #54: 'NPNT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
NPNT MUTATED | 0 | 1 | 3
NPNT WILD-TYPE | 4 | 17 | 22

'NPNT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S429. Gene #54: 'NPNT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
NPNT MUTATED | 2 | 0 | 2
NPNT WILD-TYPE | 23 | 11 | 12

'NPNT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S430. Gene #54: 'NPNT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
NPNT MUTATED | 1 | 1 | 2
NPNT WILD-TYPE | 7 | 18 | 21

'NPNT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S431. Gene #54: 'NPNT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
NPNT MUTATED | 2 | 0 | 2
NPNT WILD-TYPE | 19 | 9 | 18

'NPNT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S432. Gene #54: 'NPNT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
NPNT MUTATED | 1 | 2 | 1
NPNT WILD-TYPE | 8 | 20 | 18

'MED9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S433. Gene #55: 'MED9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
MED9 MUTATED | 0 | 1 | 2
MED9 WILD-TYPE | 13 | 28 | 12

'MED9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0131 (Fisher's exact test), Q value = 1

Table S434. Gene #55: 'MED9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
MED9 MUTATED | 0 | 0 | 3
MED9 WILD-TYPE | 18 | 24 | 11

Figure S25. Get High-res Image Gene #55: 'MED9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MED9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S435. Gene #55: 'MED9 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
MED9 MUTATED | 2 | 1 | 0
MED9 WILD-TYPE | 23 | 10 | 14

'MED9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S436. Gene #55: 'MED9 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
MED9 MUTATED | 0 | 1 | 2
MED9 WILD-TYPE | 8 | 18 | 21

'MED9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S437. Gene #55: 'MED9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
MED9 MUTATED | 2 | 0 | 1
MED9 WILD-TYPE | 19 | 9 | 19

'MED9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S438. Gene #55: 'MED9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
MED9 MUTATED | 0 | 2 | 1
MED9 WILD-TYPE | 9 | 20 | 18

'BCL2L1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S439. Gene #56: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
BCL2L1 MUTATED | 1 | 2 | 0
BCL2L1 WILD-TYPE | 12 | 27 | 14

'BCL2L1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S440. Gene #56: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
BCL2L1 MUTATED | 1 | 2 | 0
BCL2L1 WILD-TYPE | 17 | 22 | 14

'BCL2L1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S441. Gene #56: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
BCL2L1 MUTATED | 1 | 1 | 0 | 1
BCL2L1 WILD-TYPE | 17 | 11 | 9 | 7

'BCL2L1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S442. Gene #56: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
BCL2L1 MUTATED | 1 | 1 | 1
BCL2L1 WILD-TYPE | 3 | 17 | 24

'BCL2L1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S443. Gene #56: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
BCL2L1 MUTATED | 2 | 1 | 0
BCL2L1 WILD-TYPE | 23 | 10 | 14

'BCL2L1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S444. Gene #56: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
BCL2L1 MUTATED | 0 | 1 | 2
BCL2L1 WILD-TYPE | 8 | 18 | 21

'BCL2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S445. Gene #56: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
BCL2L1 MUTATED | 1 | 1 | 1
BCL2L1 WILD-TYPE | 20 | 8 | 19

'BCL2L1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S446. Gene #56: 'BCL2L1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
BCL2L1 MUTATED | 0 | 2 | 1
BCL2L1 WILD-TYPE | 9 | 20 | 18

'CPLX3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S447. Gene #57: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
CPLX3 MUTATED | 0 | 3 | 0
CPLX3 WILD-TYPE | 13 | 26 | 14

'CPLX3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S448. Gene #57: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
CPLX3 MUTATED | 0 | 2 | 1
CPLX3 WILD-TYPE | 18 | 22 | 13

'CPLX3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S449. Gene #57: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
CPLX3 MUTATED | 0 | 2 | 1 | 0
CPLX3 WILD-TYPE | 18 | 10 | 8 | 8

'CPLX3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S450. Gene #57: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
CPLX3 MUTATED | 0 | 0 | 3
CPLX3 WILD-TYPE | 4 | 18 | 22

'CPLX3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0663 (Fisher's exact test), Q value = 1

Table S451. Gene #57: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
CPLX3 MUTATED | 0 | 2 | 1
CPLX3 WILD-TYPE | 25 | 9 | 13

'CPLX3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S452. Gene #57: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
CPLX3 MUTATED | 0 | 3 | 0
CPLX3 WILD-TYPE | 8 | 16 | 23

'CPLX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S453. Gene #57: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
CPLX3 MUTATED | 0 | 0 | 3
CPLX3 WILD-TYPE | 21 | 9 | 17

'CPLX3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S454. Gene #57: 'CPLX3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
CPLX3 MUTATED | 0 | 0 | 3
CPLX3 WILD-TYPE | 9 | 22 | 16

'IRX4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S455. Gene #58: 'IRX4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
IRX4 MUTATED | 1 | 2 | 0
IRX4 WILD-TYPE | 12 | 27 | 14

'IRX4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S456. Gene #58: 'IRX4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
IRX4 MUTATED | 1 | 2 | 0
IRX4 WILD-TYPE | 17 | 22 | 14

'IRX4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S457. Gene #58: 'IRX4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
IRX4 MUTATED | 1 | 0 | 2 | 0
IRX4 WILD-TYPE | 17 | 12 | 7 | 8

'IRX4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S458. Gene #58: 'IRX4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
IRX4 MUTATED | 0 | 1 | 2
IRX4 WILD-TYPE | 4 | 17 | 23

'IRX4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S459. Gene #58: 'IRX4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
IRX4 MUTATED | 1 | 0 | 2
IRX4 WILD-TYPE | 24 | 11 | 12

'IRX4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S460. Gene #58: 'IRX4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
IRX4 MUTATED | 1 | 1 | 1
IRX4 WILD-TYPE | 7 | 18 | 22

'IRX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S461. Gene #58: 'IRX4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
IRX4 MUTATED | 1 | 0 | 2
IRX4 WILD-TYPE | 20 | 9 | 18

'IRX4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S462. Gene #58: 'IRX4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
IRX4 MUTATED | 1 | 1 | 1
IRX4 WILD-TYPE | 8 | 21 | 18

'NFAT5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S463. Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
NFAT5 MUTATED | 2 | 5 | 1
NFAT5 WILD-TYPE | 11 | 24 | 13

'NFAT5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S464. Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
NFAT5 MUTATED | 1 | 4 | 3
NFAT5 WILD-TYPE | 17 | 20 | 11

'NFAT5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S465. Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
NFAT5 MUTATED | 3 | 1 | 3 | 1
NFAT5 WILD-TYPE | 15 | 11 | 6 | 7

'NFAT5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S466. Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
NFAT5 MUTATED | 1 | 3 | 4
NFAT5 WILD-TYPE | 3 | 15 | 21

'NFAT5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S467. Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
NFAT5 MUTATED | 4 | 1 | 3
NFAT5 WILD-TYPE | 21 | 10 | 11

'NFAT5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S468. Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
NFAT5 MUTATED | 0 | 4 | 4
NFAT5 WILD-TYPE | 8 | 15 | 19

'NFAT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S469. Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
NFAT5 MUTATED | 3 | 1 | 4
NFAT5 WILD-TYPE | 18 | 8 | 16

'NFAT5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S470. Gene #59: 'NFAT5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
NFAT5 MUTATED | 1 | 3 | 4
NFAT5 WILD-TYPE | 8 | 19 | 15

'WASF3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.584 (Fisher's exact test), Q value = 1

Table S471. Gene #60: 'WASF3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
WASF3 MUTATED | 0 | 3 | 2
WASF3 WILD-TYPE | 13 | 26 | 12

'WASF3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S472. Gene #60: 'WASF3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
WASF3 MUTATED | 0 | 3 | 2
WASF3 WILD-TYPE | 18 | 21 | 12

'WASF3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S473. Gene #60: 'WASF3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
WASF3 MUTATED | 1 | 0 | 1 | 2
WASF3 WILD-TYPE | 17 | 12 | 8 | 6

'WASF3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.511 (Fisher's exact test), Q value = 1

Table S474. Gene #60: 'WASF3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
WASF3 MUTATED | 1 | 1 | 2
WASF3 WILD-TYPE | 3 | 17 | 23

'WASF3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S475. Gene #60: 'WASF3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
WASF3 MUTATED | 3 | 0 | 2
WASF3 WILD-TYPE | 22 | 11 | 12

'WASF3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S476. Gene #60: 'WASF3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
WASF3 MUTATED | 1 | 1 | 3
WASF3 WILD-TYPE | 7 | 18 | 20

'WASF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S477. Gene #60: 'WASF3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
WASF3 MUTATED | 2 | 1 | 2
WASF3 WILD-TYPE | 19 | 8 | 18

'WASF3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.832 (Fisher's exact test), Q value = 1

Table S478. Gene #60: 'WASF3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
WASF3 MUTATED | 1 | 3 | 1
WASF3 WILD-TYPE | 8 | 19 | 18

'ABCC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S479. Gene #61: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
ABCC2 MUTATED | 1 | 5 | 0
ABCC2 WILD-TYPE | 12 | 24 | 14

'ABCC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S480. Gene #61: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
ABCC2 MUTATED | 0 | 4 | 2
ABCC2 WILD-TYPE | 18 | 20 | 12

'ABCC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S481. Gene #61: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
ABCC2 MUTATED | 2 | 1 | 3 | 0
ABCC2 WILD-TYPE | 16 | 11 | 6 | 8

'ABCC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S482. Gene #61: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
ABCC2 MUTATED | 0 | 1 | 5
ABCC2 WILD-TYPE | 4 | 17 | 20

'ABCC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S483. Gene #61: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
ABCC2 MUTATED | 2 | 1 | 3
ABCC2 WILD-TYPE | 23 | 10 | 11

'ABCC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S484. Gene #61: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
ABCC2 MUTATED | 2 | 3 | 1
ABCC2 WILD-TYPE | 6 | 16 | 22

'ABCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S485. Gene #61: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
ABCC2 MUTATED | 1 | 1 | 4
ABCC2 WILD-TYPE | 20 | 8 | 16

'ABCC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S486. Gene #61: 'ABCC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
ABCC2 MUTATED | 2 | 1 | 3
ABCC2 WILD-TYPE | 7 | 21 | 16

'ATP13A3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S487. Gene #62: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
ATP13A3 MUTATED | 0 | 2 | 2
ATP13A3 WILD-TYPE | 13 | 27 | 12

'ATP13A3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S488. Gene #62: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
ATP13A3 MUTATED | 0 | 2 | 2
ATP13A3 WILD-TYPE | 18 | 22 | 12

'ATP13A3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S489. Gene #62: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
ATP13A3 MUTATED | 1 | 1 | 1 | 0
ATP13A3 WILD-TYPE | 17 | 11 | 8 | 8

'ATP13A3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S490. Gene #62: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
ATP13A3 MUTATED | 0 | 1 | 2
ATP13A3 WILD-TYPE | 4 | 17 | 23

'ATP13A3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S491. Gene #62: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
ATP13A3 MUTATED | 2 | 1 | 1
ATP13A3 WILD-TYPE | 23 | 10 | 13

'ATP13A3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S492. Gene #62: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
ATP13A3 MUTATED | 0 | 2 | 2
ATP13A3 WILD-TYPE | 8 | 17 | 21

'ATP13A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S493. Gene #62: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
ATP13A3 MUTATED | 2 | 1 | 1
ATP13A3 WILD-TYPE | 19 | 8 | 19

'ATP13A3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S494. Gene #62: 'ATP13A3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
ATP13A3 MUTATED | 0 | 2 | 2
ATP13A3 WILD-TYPE | 9 | 20 | 17

'ARHGAP18 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S495. Gene #63: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
ARHGAP18 MUTATED | 0 | 3 | 0
ARHGAP18 WILD-TYPE | 13 | 26 | 14

'ARHGAP18 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S496. Gene #63: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
ARHGAP18 MUTATED | 0 | 3 | 1
ARHGAP18 WILD-TYPE | 18 | 21 | 13

'ARHGAP18 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.071 (Fisher's exact test), Q value = 1

Table S497. Gene #63: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
ARHGAP18 MUTATED | 0 | 3 | 1 | 0
ARHGAP18 WILD-TYPE | 18 | 9 | 8 | 8

'ARHGAP18 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S498. Gene #63: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
ARHGAP18 MUTATED | 0 | 0 | 4
ARHGAP18 WILD-TYPE | 4 | 18 | 21

'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0728 (Fisher's exact test), Q value = 1

Table S499. Gene #63: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
ARHGAP18 MUTATED | 0 | 2 | 2
ARHGAP18 WILD-TYPE | 25 | 9 | 12

'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.362 (Fisher's exact test), Q value = 1

Table S500. Gene #63: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
ARHGAP18 MUTATED | 0 | 3 | 1
ARHGAP18 WILD-TYPE | 8 | 16 | 22

'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S501. Gene #63: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
ARHGAP18 MUTATED | 0 | 1 | 3
ARHGAP18 WILD-TYPE | 21 | 8 | 17

'ARHGAP18 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 1

Table S502. Gene #63: 'ARHGAP18 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
ARHGAP18 MUTATED | 1 | 0 | 3
ARHGAP18 WILD-TYPE | 8 | 22 | 16

'CIR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S503. Gene #64: 'CIR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
CIR1 MUTATED | 0 | 2 | 1
CIR1 WILD-TYPE | 13 | 27 | 13

'CIR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S504. Gene #64: 'CIR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
CIR1 MUTATED | 0 | 2 | 1
CIR1 WILD-TYPE | 18 | 22 | 13

'CIR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S505. Gene #64: 'CIR1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
CIR1 MUTATED | 1 | 2 | 0
CIR1 WILD-TYPE | 24 | 9 | 14

'CIR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S506. Gene #64: 'CIR1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
CIR1 MUTATED | 0 | 2 | 1
CIR1 WILD-TYPE | 8 | 17 | 22

'CIR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S507. Gene #64: 'CIR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
CIR1 MUTATED | 1 | 1 | 1
CIR1 WILD-TYPE | 20 | 8 | 19

'CIR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S508. Gene #64: 'CIR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
CIR1 MUTATED | 0 | 1 | 2
CIR1 WILD-TYPE | 9 | 21 | 17

'KIAA0020 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S509. Gene #65: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
KIAA0020 MUTATED | 0 | 3 | 1
KIAA0020 WILD-TYPE | 13 | 26 | 13

'KIAA0020 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S510. Gene #65: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
KIAA0020 MUTATED | 0 | 2 | 2
KIAA0020 WILD-TYPE | 18 | 22 | 12

'KIAA0020 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S511. Gene #65: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
KIAA0020 MUTATED | 0 | 1 | 2 | 0
KIAA0020 WILD-TYPE | 18 | 11 | 7 | 8

'KIAA0020 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S512. Gene #65: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
KIAA0020 MUTATED | 0 | 0 | 3
KIAA0020 WILD-TYPE | 4 | 18 | 22

'KIAA0020 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S513. Gene #65: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
KIAA0020 MUTATED | 1 | 1 | 2
KIAA0020 WILD-TYPE | 24 | 10 | 12

'KIAA0020 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S514. Gene #65: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
KIAA0020 MUTATED | 0 | 2 | 2
KIAA0020 WILD-TYPE | 8 | 17 | 21

'KIAA0020 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S515. Gene #65: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
KIAA0020 MUTATED | 1 | 0 | 3
KIAA0020 WILD-TYPE | 20 | 9 | 17

'KIAA0020 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S516. Gene #65: 'KIAA0020 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
KIAA0020 MUTATED | 1 | 1 | 2
KIAA0020 WILD-TYPE | 8 | 21 | 17

'ZNF608 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0687 (Fisher's exact test), Q value = 1

Table S517. Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
ZNF608 MUTATED | 0 | 6 | 0
ZNF608 WILD-TYPE | 13 | 23 | 14

'ZNF608 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S518. Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
ZNF608 MUTATED | 0 | 3 | 3
ZNF608 WILD-TYPE | 18 | 21 | 11

'ZNF608 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S519. Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
ZNF608 MUTATED | 1 | 2 | 2 | 1
ZNF608 WILD-TYPE | 17 | 10 | 7 | 7

'ZNF608 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S520. Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
ZNF608 MUTATED | 0 | 1 | 5
ZNF608 WILD-TYPE | 4 | 17 | 20

'ZNF608 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S521. Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
ZNF608 MUTATED | 1 | 2 | 3
ZNF608 WILD-TYPE | 24 | 9 | 11

'ZNF608 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S522. Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
ZNF608 MUTATED | 2 | 3 | 1
ZNF608 WILD-TYPE | 6 | 16 | 22

'ZNF608 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0455 (Fisher's exact test), Q value = 1

Table S523. Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
ZNF608 MUTATED | 0 | 2 | 4
ZNF608 WILD-TYPE | 21 | 7 | 16

Figure S26. Get High-res Image Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'ZNF608 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0184 (Fisher's exact test), Q value = 1

Table S524. Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
ZNF608 MUTATED | 3 | 0 | 3
ZNF608 WILD-TYPE | 6 | 22 | 16

Figure S27. Get High-res Image Gene #66: 'ZNF608 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NEDD4L MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S525. Gene #67: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
NEDD4L MUTATED | 1 | 4 | 1
NEDD4L WILD-TYPE | 12 | 25 | 13

'NEDD4L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S526. Gene #67: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
NEDD4L MUTATED | 1 | 2 | 3
NEDD4L WILD-TYPE | 17 | 22 | 11

'NEDD4L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S527. Gene #67: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
NEDD4L MUTATED | 3 | 2 | 1 | 0
NEDD4L WILD-TYPE | 15 | 10 | 8 | 8

'NEDD4L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S528. Gene #67: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
NEDD4L MUTATED | 0 | 3 | 3
NEDD4L WILD-TYPE | 4 | 15 | 22

'NEDD4L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S529. Gene #67: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
NEDD4L MUTATED | 3 | 2 | 1
NEDD4L WILD-TYPE | 22 | 9 | 13

'NEDD4L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S530. Gene #67: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
NEDD4L MUTATED | 0 | 4 | 2
NEDD4L WILD-TYPE | 8 | 15 | 21

'NEDD4L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S531. Gene #67: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
NEDD4L MUTATED | 2 | 1 | 3
NEDD4L WILD-TYPE | 19 | 8 | 17

'NEDD4L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.317 (Fisher's exact test), Q value = 1

Table S532. Gene #67: 'NEDD4L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
NEDD4L MUTATED | 0 | 2 | 4
NEDD4L WILD-TYPE | 9 | 20 | 15

'THBS4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S533. Gene #68: 'THBS4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
THBS4 MUTATED | 0 | 5 | 1
THBS4 WILD-TYPE | 13 | 24 | 13

'THBS4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S534. Gene #68: 'THBS4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
THBS4 MUTATED | 0 | 3 | 3
THBS4 WILD-TYPE | 18 | 21 | 11

'THBS4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S535. Gene #68: 'THBS4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
THBS4 MUTATED | 1 | 1 | 3 | 0
THBS4 WILD-TYPE | 17 | 11 | 6 | 8

'THBS4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S536. Gene #68: 'THBS4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
THBS4 MUTATED | 0 | 1 | 4
THBS4 WILD-TYPE | 4 | 17 | 21

'THBS4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S537. Gene #68: 'THBS4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
THBS4 MUTATED | 2 | 1 | 3
THBS4 WILD-TYPE | 23 | 10 | 11

'THBS4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S538. Gene #68: 'THBS4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
THBS4 MUTATED | 1 | 3 | 2
THBS4 WILD-TYPE | 7 | 16 | 21

'THBS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S539. Gene #68: 'THBS4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
THBS4 MUTATED | 1 | 2 | 3
THBS4 WILD-TYPE | 20 | 7 | 17

'THBS4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S540. Gene #68: 'THBS4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
THBS4 MUTATED | 2 | 1 | 3
THBS4 WILD-TYPE | 7 | 21 | 16

'MMRN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S541. Gene #69: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
MMRN1 MUTATED | 1 | 4 | 1
MMRN1 WILD-TYPE | 12 | 25 | 13

'MMRN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S542. Gene #69: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
MMRN1 MUTATED | 1 | 3 | 2
MMRN1 WILD-TYPE | 17 | 21 | 12

'MMRN1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.914 (Fisher's exact test), Q value = 1

Table S543. Gene #69: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
MMRN1 MUTATED | 2 | 2 | 1 | 0
MMRN1 WILD-TYPE | 16 | 10 | 8 | 8

'MMRN1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S544. Gene #69: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
MMRN1 MUTATED | 0 | 2 | 3
MMRN1 WILD-TYPE | 4 | 16 | 22

'MMRN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S545. Gene #69: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
MMRN1 MUTATED | 3 | 2 | 1
MMRN1 WILD-TYPE | 22 | 9 | 13

'MMRN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S546. Gene #69: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
MMRN1 MUTATED | 1 | 3 | 2
MMRN1 WILD-TYPE | 7 | 16 | 21

'MMRN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.626 (Fisher's exact test), Q value = 1

Table S547. Gene #69: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
MMRN1 MUTATED | 2 | 2 | 2
MMRN1 WILD-TYPE | 19 | 7 | 18

'MMRN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S548. Gene #69: 'MMRN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
MMRN1 MUTATED | 1 | 2 | 3
MMRN1 WILD-TYPE | 8 | 20 | 16

'GPR25 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S549. Gene #70: 'GPR25 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
GPR25 MUTATED | 0 | 3 | 0
GPR25 WILD-TYPE | 13 | 26 | 14

'GPR25 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S550. Gene #70: 'GPR25 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
GPR25 MUTATED | 0 | 2 | 1
GPR25 WILD-TYPE | 18 | 22 | 13

'GPR25 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S551. Gene #70: 'GPR25 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
GPR25 MUTATED | 1 | 1 | 1 | 0
GPR25 WILD-TYPE | 17 | 11 | 8 | 8

'GPR25 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S552. Gene #70: 'GPR25 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
GPR25 MUTATED | 0 | 1 | 2
GPR25 WILD-TYPE | 4 | 17 | 23

'GPR25 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S553. Gene #70: 'GPR25 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
GPR25 MUTATED | 1 | 1 | 1
GPR25 WILD-TYPE | 24 | 10 | 13

'GPR25 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S554. Gene #70: 'GPR25 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
GPR25 MUTATED | 0 | 3 | 0
GPR25 WILD-TYPE | 8 | 16 | 23

'GPR25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S555. Gene #70: 'GPR25 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
GPR25 MUTATED | 0 | 1 | 2
GPR25 WILD-TYPE | 21 | 8 | 18

'GPR25 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S556. Gene #70: 'GPR25 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
GPR25 MUTATED | 0 | 0 | 3
GPR25 WILD-TYPE | 9 | 22 | 16

'SORBS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S557. Gene #71: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
SORBS2 MUTATED | 0 | 4 | 2
SORBS2 WILD-TYPE | 13 | 25 | 12

'SORBS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0307 (Fisher's exact test), Q value = 1

Table S558. Gene #71: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
SORBS2 MUTATED | 0 | 2 | 4
SORBS2 WILD-TYPE | 18 | 22 | 10

Figure S28. Get High-res Image Gene #71: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SORBS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S559. Gene #71: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
SORBS2 MUTATED | 2 | 1 | 1 | 0
SORBS2 WILD-TYPE | 16 | 11 | 8 | 8

'SORBS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S560. Gene #71: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
SORBS2 MUTATED | 0 | 2 | 2
SORBS2 WILD-TYPE | 4 | 16 | 23

'SORBS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S561. Gene #71: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
SORBS2 MUTATED | 3 | 1 | 1
SORBS2 WILD-TYPE | 22 | 10 | 13

'SORBS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S562. Gene #71: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
SORBS2 MUTATED | 1 | 2 | 2
SORBS2 WILD-TYPE | 7 | 17 | 21

'SORBS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S563. Gene #71: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
SORBS2 MUTATED | 2 | 1 | 2
SORBS2 WILD-TYPE | 19 | 8 | 18

'SORBS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S564. Gene #71: 'SORBS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
SORBS2 MUTATED | 1 | 2 | 2
SORBS2 WILD-TYPE | 8 | 20 | 17

'SULT1C3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S565. Gene #72: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
SULT1C3 MUTATED | 1 | 1 | 1
SULT1C3 WILD-TYPE | 12 | 28 | 13

'SULT1C3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S566. Gene #72: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
SULT1C3 MUTATED | 1 | 0 | 2
SULT1C3 WILD-TYPE | 17 | 24 | 12

'SULT1C3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S567. Gene #72: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
SULT1C3 MUTATED | 2 | 1 | 0 | 0
SULT1C3 WILD-TYPE | 16 | 11 | 9 | 8

'SULT1C3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S568. Gene #72: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
SULT1C3 MUTATED | 0 | 2 | 1
SULT1C3 WILD-TYPE | 4 | 16 | 24

'SULT1C3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S569. Gene #72: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
SULT1C3 MUTATED | 2 | 1 | 0
SULT1C3 WILD-TYPE | 23 | 10 | 14

'SULT1C3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S570. Gene #72: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
SULT1C3 MUTATED | 0 | 1 | 2
SULT1C3 WILD-TYPE | 8 | 18 | 21

'SULT1C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S571. Gene #72: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
SULT1C3 MUTATED | 2 | 0 | 1
SULT1C3 WILD-TYPE | 19 | 9 | 19

'SULT1C3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S572. Gene #72: 'SULT1C3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
SULT1C3 MUTATED | 0 | 2 | 1
SULT1C3 WILD-TYPE | 9 | 20 | 18

'ECSIT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S573. Gene #73: 'ECSIT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
ECSIT MUTATED | 1 | 3 | 0
ECSIT WILD-TYPE | 12 | 26 | 14

'ECSIT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S574. Gene #73: 'ECSIT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
ECSIT MUTATED | 1 | 2 | 1
ECSIT WILD-TYPE | 17 | 22 | 13

'ECSIT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0397 (Fisher's exact test), Q value = 1

Table S575. Gene #73: 'ECSIT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
ECSIT MUTATED | 1 | 0 | 3 | 0
ECSIT WILD-TYPE | 17 | 12 | 6 | 8

Figure S29. Get High-res Image Gene #73: 'ECSIT MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'ECSIT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S576. Gene #73: 'ECSIT MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
ECSIT MUTATED | 0 | 1 | 3
ECSIT WILD-TYPE | 4 | 17 | 22

'ECSIT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S577. Gene #73: 'ECSIT MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
ECSIT MUTATED | 1 | 0 | 3
ECSIT WILD-TYPE | 24 | 11 | 11

'ECSIT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S578. Gene #73: 'ECSIT MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
ECSIT MUTATED | 1 | 1 | 2
ECSIT WILD-TYPE | 7 | 18 | 21

'ECSIT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S579. Gene #73: 'ECSIT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
ECSIT MUTATED | 1 | 0 | 3
ECSIT WILD-TYPE | 20 | 9 | 17

'ECSIT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S580. Gene #73: 'ECSIT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
ECSIT MUTATED | 2 | 1 | 1
ECSIT WILD-TYPE | 7 | 21 | 18

'ZNF326 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S581. Gene #74: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
ZNF326 MUTATED | 0 | 3 | 1
ZNF326 WILD-TYPE | 13 | 26 | 13

'ZNF326 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S582. Gene #74: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
ZNF326 MUTATED | 0 | 2 | 2
ZNF326 WILD-TYPE | 18 | 22 | 12

'ZNF326 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S583. Gene #74: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
ZNF326 MUTATED | 1 | 0 | 2 | 0
ZNF326 WILD-TYPE | 17 | 12 | 7 | 8

'ZNF326 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S584. Gene #74: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
ZNF326 MUTATED | 0 | 1 | 2
ZNF326 WILD-TYPE | 4 | 17 | 23

'ZNF326 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S585. Gene #74: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
ZNF326 MUTATED | 2 | 0 | 2
ZNF326 WILD-TYPE | 23 | 11 | 12

'ZNF326 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S586. Gene #74: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
ZNF326 MUTATED | 1 | 2 | 1
ZNF326 WILD-TYPE | 7 | 17 | 22

'ZNF326 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S587. Gene #74: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
ZNF326 MUTATED | 1 | 1 | 2
ZNF326 WILD-TYPE | 20 | 8 | 18

'ZNF326 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S588. Gene #74: 'ZNF326 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
ZNF326 MUTATED | 1 | 1 | 2
ZNF326 WILD-TYPE | 8 | 21 | 17

'C15ORF52 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S589. Gene #75: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
C15ORF52 MUTATED | 0 | 2 | 1
C15ORF52 WILD-TYPE | 13 | 27 | 13

'C15ORF52 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S590. Gene #75: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
C15ORF52 MUTATED | 0 | 2 | 1
C15ORF52 WILD-TYPE | 18 | 22 | 13

'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S591. Gene #75: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
C15ORF52 MUTATED | 1 | 1 | 1
C15ORF52 WILD-TYPE | 24 | 10 | 13

'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S592. Gene #75: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
C15ORF52 MUTATED | 1 | 1 | 1
C15ORF52 WILD-TYPE | 7 | 18 | 22

'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S593. Gene #75: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
C15ORF52 MUTATED | 1 | 0 | 2
C15ORF52 WILD-TYPE | 20 | 9 | 18

'C15ORF52 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S594. Gene #75: 'C15ORF52 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
C15ORF52 MUTATED | 1 | 1 | 1
C15ORF52 WILD-TYPE | 8 | 21 | 18

'SLC39A5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S595. Gene #76: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
SLC39A5 MUTATED | 1 | 2 | 0
SLC39A5 WILD-TYPE | 12 | 27 | 14

'SLC39A5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S596. Gene #76: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
SLC39A5 MUTATED | 1 | 2 | 0
SLC39A5 WILD-TYPE | 17 | 22 | 14

'SLC39A5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S597. Gene #76: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
SLC39A5 MUTATED | 1 | 1 | 1 | 0
SLC39A5 WILD-TYPE | 17 | 11 | 8 | 8

'SLC39A5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S598. Gene #76: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
SLC39A5 MUTATED | 0 | 1 | 2
SLC39A5 WILD-TYPE | 4 | 17 | 23

'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S599. Gene #76: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
SLC39A5 MUTATED | 1 | 1 | 1
SLC39A5 WILD-TYPE | 24 | 10 | 13

'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S600. Gene #76: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
SLC39A5 MUTATED | 0 | 2 | 1
SLC39A5 WILD-TYPE | 8 | 17 | 22

'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S601. Gene #76: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
SLC39A5 MUTATED | 1 | 1 | 1
SLC39A5 WILD-TYPE | 20 | 8 | 19

'SLC39A5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S602. Gene #76: 'SLC39A5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
SLC39A5 MUTATED | 0 | 1 | 2
SLC39A5 WILD-TYPE | 9 | 21 | 17

'SLC24A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S603. Gene #77: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
SLC24A1 MUTATED | 0 | 4 | 0
SLC24A1 WILD-TYPE | 13 | 25 | 14

'SLC24A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S604. Gene #77: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
SLC24A1 MUTATED | 0 | 3 | 1
SLC24A1 WILD-TYPE | 18 | 21 | 13

'SLC24A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S605. Gene #77: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
SLC24A1 MUTATED | 1 | 1 | 2 | 0
SLC24A1 WILD-TYPE | 17 | 11 | 7 | 8

'SLC24A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S606. Gene #77: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
SLC24A1 MUTATED | 0 | 1 | 3
SLC24A1 WILD-TYPE | 4 | 17 | 22

'SLC24A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S607. Gene #77: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
SLC24A1 MUTATED | 1 | 1 | 2
SLC24A1 WILD-TYPE | 24 | 10 | 12

'SLC24A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S608. Gene #77: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
SLC24A1 MUTATED | 1 | 3 | 0
SLC24A1 WILD-TYPE | 7 | 16 | 23

'SLC24A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S609. Gene #77: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
SLC24A1 MUTATED | 0 | 1 | 3
SLC24A1 WILD-TYPE | 21 | 8 | 17

'SLC24A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.165 (Fisher's exact test), Q value = 1

Table S610. Gene #77: 'SLC24A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
SLC24A1 MUTATED | 1 | 0 | 3
SLC24A1 WILD-TYPE | 8 | 22 | 16

'PUM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S611. Gene #78: 'PUM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
PUM2 MUTATED | 1 | 4 | 0
PUM2 WILD-TYPE | 12 | 25 | 14

'PUM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S612. Gene #78: 'PUM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
PUM2 MUTATED | 1 | 2 | 2
PUM2 WILD-TYPE | 17 | 22 | 12

'PUM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S613. Gene #78: 'PUM2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
PUM2 MUTATED | 2 | 1 | 2 | 0
PUM2 WILD-TYPE | 16 | 11 | 7 | 8

'PUM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S614. Gene #78: 'PUM2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
PUM2 MUTATED | 0 | 2 | 3
PUM2 WILD-TYPE | 4 | 16 | 22

'PUM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S615. Gene #78: 'PUM2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
PUM2 MUTATED | 2 | 1 | 2
PUM2 WILD-TYPE | 23 | 10 | 12

'PUM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S616. Gene #78: 'PUM2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
PUM2 MUTATED | 1 | 2 | 2
PUM2 WILD-TYPE | 7 | 17 | 21

'PUM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S617. Gene #78: 'PUM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
PUM2 MUTATED | 1 | 2 | 2
PUM2 WILD-TYPE | 20 | 7 | 18

'PUM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S618. Gene #78: 'PUM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
PUM2 MUTATED | 2 | 1 | 2
PUM2 WILD-TYPE | 7 | 21 | 17

'SYT2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S619. Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
SYT2 MUTATED | 0 | 5 | 0
SYT2 WILD-TYPE | 13 | 24 | 14

'SYT2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0249 (Fisher's exact test), Q value = 1

Table S620. Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
SYT2 MUTATED | 0 | 5 | 0
SYT2 WILD-TYPE | 18 | 19 | 14

Figure S30. Get High-res Image Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SYT2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S621. Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
SYT2 MUTATED | 0 | 2 | 2 | 1
SYT2 WILD-TYPE | 18 | 10 | 7 | 7

'SYT2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S622. Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
SYT2 MUTATED | 0 | 0 | 5
SYT2 WILD-TYPE | 4 | 18 | 20

'SYT2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 1

Table S623. Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
SYT2 MUTATED | 0 | 2 | 3
SYT2 WILD-TYPE | 25 | 9 | 11

Figure S31. Get High-res Image Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

'SYT2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0425 (Fisher's exact test), Q value = 1

Table S624. Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
SYT2 MUTATED | 2 | 3 | 0
SYT2 WILD-TYPE | 6 | 16 | 23

Figure S32. Get High-res Image Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'SYT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0919 (Fisher's exact test), Q value = 1

Table S625. Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
SYT2 MUTATED | 0 | 1 | 4
SYT2 WILD-TYPE | 21 | 8 | 16

'SYT2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0693 (Fisher's exact test), Q value = 1

Table S626. Gene #79: 'SYT2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
SYT2 MUTATED | 2 | 0 | 3
SYT2 WILD-TYPE | 7 | 22 | 16

'SLITRK5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S627. Gene #80: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
SLITRK5 MUTATED | 1 | 5 | 0
SLITRK5 WILD-TYPE | 12 | 24 | 14

'SLITRK5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S628. Gene #80: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
SLITRK5 MUTATED | 1 | 3 | 2
SLITRK5 WILD-TYPE | 17 | 21 | 12

'SLITRK5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S629. Gene #80: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
SLITRK5 MUTATED | 2 | 1 | 3 | 0
SLITRK5 WILD-TYPE | 16 | 11 | 6 | 8

'SLITRK5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S630. Gene #80: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
SLITRK5 MUTATED | 0 | 2 | 4
SLITRK5 WILD-TYPE | 4 | 16 | 21

'SLITRK5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S631. Gene #80: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
SLITRK5 MUTATED | 2 | 1 | 3
SLITRK5 WILD-TYPE | 23 | 10 | 11

'SLITRK5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S632. Gene #80: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
SLITRK5 MUTATED | 1 | 3 | 2
SLITRK5 WILD-TYPE | 7 | 16 | 21

'SLITRK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S633. Gene #80: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
SLITRK5 MUTATED | 1 | 2 | 3
SLITRK5 WILD-TYPE | 20 | 7 | 17

'SLITRK5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.261 (Fisher's exact test), Q value = 1

Table S634. Gene #80: 'SLITRK5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
SLITRK5 MUTATED | 2 | 1 | 3
SLITRK5 WILD-TYPE | 7 | 21 | 16

'NAP1L3 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S635. Gene #81: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
NAP1L3 MUTATED | 0 | 2 | 1
NAP1L3 WILD-TYPE | 13 | 27 | 13

'NAP1L3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S636. Gene #81: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
NAP1L3 MUTATED | 1 | 2 | 0
NAP1L3 WILD-TYPE | 17 | 22 | 14

'NAP1L3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S637. Gene #81: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
NAP1L3 MUTATED | 1 | 0 | 2 | 0
NAP1L3 WILD-TYPE | 17 | 12 | 7 | 8

'NAP1L3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S638. Gene #81: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
NAP1L3 MUTATED | 0 | 1 | 2
NAP1L3 WILD-TYPE | 4 | 17 | 23

'NAP1L3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S639. Gene #81: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
NAP1L3 MUTATED | 1 | 0 | 2
NAP1L3 WILD-TYPE | 24 | 11 | 12

'NAP1L3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S640. Gene #81: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
NAP1L3 MUTATED | 1 | 1 | 1
NAP1L3 WILD-TYPE | 7 | 18 | 22

'NAP1L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S641. Gene #81: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
NAP1L3 MUTATED | 1 | 0 | 2
NAP1L3 WILD-TYPE | 20 | 9 | 18

'NAP1L3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S642. Gene #81: 'NAP1L3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
NAP1L3 MUTATED | 1 | 1 | 1
NAP1L3 WILD-TYPE | 8 | 21 | 18

'PHF14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S643. Gene #82: 'PHF14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
PHF14 MUTATED | 1 | 2 | 0
PHF14 WILD-TYPE | 12 | 27 | 14

'PHF14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S644. Gene #82: 'PHF14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
PHF14 MUTATED | 1 | 2 | 0
PHF14 WILD-TYPE | 17 | 22 | 14

'PHF14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S645. Gene #82: 'PHF14 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
PHF14 MUTATED | 1 | 1 | 1 | 0
PHF14 WILD-TYPE | 17 | 11 | 8 | 8

'PHF14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S646. Gene #82: 'PHF14 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
PHF14 MUTATED | 0 | 1 | 2
PHF14 WILD-TYPE | 4 | 17 | 23

'PHF14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S647. Gene #82: 'PHF14 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
PHF14 MUTATED | 1 | 1 | 1
PHF14 WILD-TYPE | 24 | 10 | 13

'PHF14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S648. Gene #82: 'PHF14 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
PHF14 MUTATED | 1 | 1 | 1
PHF14 WILD-TYPE | 7 | 18 | 22

'PHF14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S649. Gene #82: 'PHF14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
PHF14 MUTATED | 1 | 0 | 2
PHF14 WILD-TYPE | 20 | 9 | 18

'PHF14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S650. Gene #82: 'PHF14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
PHF14 MUTATED | 1 | 1 | 1
PHF14 WILD-TYPE | 8 | 21 | 18

'CCDC28B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S651. Gene #83: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
CCDC28B MUTATED | 0 | 4 | 0
CCDC28B WILD-TYPE | 13 | 25 | 14

'CCDC28B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S652. Gene #83: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
CCDC28B MUTATED | 0 | 3 | 1
CCDC28B WILD-TYPE | 18 | 21 | 13

'CCDC28B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0142 (Fisher's exact test), Q value = 1

Table S653. Gene #83: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
CCDC28B MUTATED | 0 | 0 | 3 | 1
CCDC28B WILD-TYPE | 18 | 12 | 6 | 7

Figure S33. Get High-res Image Gene #83: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'CCDC28B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S654. Gene #83: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
CCDC28B MUTATED | 1 | 0 | 3
CCDC28B WILD-TYPE | 3 | 18 | 22

'CCDC28B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S655. Gene #83: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
CCDC28B MUTATED | 1 | 0 | 3
CCDC28B WILD-TYPE | 24 | 11 | 11

'CCDC28B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S656. Gene #83: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
CCDC28B MUTATED | 1 | 1 | 2
CCDC28B WILD-TYPE | 7 | 18 | 21

'CCDC28B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S657. Gene #83: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
CCDC28B MUTATED | 0 | 1 | 3
CCDC28B WILD-TYPE | 21 | 8 | 17

'CCDC28B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.29 (Fisher's exact test), Q value = 1

Table S658. Gene #83: 'CCDC28B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
CCDC28B MUTATED | 2 | 1 | 1
CCDC28B WILD-TYPE | 7 | 21 | 18

'PDE12 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S659. Gene #84: 'PDE12 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
PDE12 MUTATED | 0 | 2 | 1
PDE12 WILD-TYPE | 18 | 22 | 13

'PDE12 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S660. Gene #84: 'PDE12 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
PDE12 MUTATED | 1 | 1 | 1
PDE12 WILD-TYPE | 24 | 10 | 13

'PDE12 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S661. Gene #84: 'PDE12 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
PDE12 MUTATED | 0 | 2 | 1
PDE12 WILD-TYPE | 8 | 17 | 22

'PDE12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S662. Gene #84: 'PDE12 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
PDE12 MUTATED | 1 | 0 | 2
PDE12 WILD-TYPE | 20 | 9 | 18

'PDE12 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S663. Gene #84: 'PDE12 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
PDE12 MUTATED | 0 | 1 | 2
PDE12 WILD-TYPE | 9 | 21 | 17

'FLAD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S664. Gene #85: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
FLAD1 MUTATED | 0 | 3 | 0
FLAD1 WILD-TYPE | 13 | 26 | 14

'FLAD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S665. Gene #85: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
FLAD1 MUTATED | 0 | 3 | 0
FLAD1 WILD-TYPE | 18 | 21 | 14

'FLAD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S666. Gene #85: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
FLAD1 MUTATED | 0 | 1 | 2 | 0
FLAD1 WILD-TYPE | 18 | 11 | 7 | 8

'FLAD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S667. Gene #85: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
FLAD1 MUTATED | 0 | 0 | 3
FLAD1 WILD-TYPE | 4 | 18 | 22

'FLAD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S668. Gene #85: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
FLAD1 MUTATED | 0 | 1 | 2
FLAD1 WILD-TYPE | 25 | 10 | 12

'FLAD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S669. Gene #85: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
FLAD1 MUTATED | 1 | 2 | 0
FLAD1 WILD-TYPE | 7 | 17 | 23

'FLAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S670. Gene #85: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
FLAD1 MUTATED | 0 | 0 | 3
FLAD1 WILD-TYPE | 21 | 9 | 17

'FLAD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S671. Gene #85: 'FLAD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
FLAD1 MUTATED | 1 | 0 | 2
FLAD1 WILD-TYPE | 8 | 22 | 17

'ENG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S672. Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
ENG MUTATED | 0 | 3 | 0
ENG WILD-TYPE | 13 | 26 | 14

'ENG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S673. Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
ENG MUTATED | 0 | 3 | 0
ENG WILD-TYPE | 18 | 21 | 14

'ENG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S674. Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
ENG MUTATED | 0 | 1 | 2 | 0
ENG WILD-TYPE | 18 | 11 | 7 | 8

'ENG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S675. Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
ENG MUTATED | 0 | 0 | 3
ENG WILD-TYPE | 4 | 18 | 22

'ENG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S676. Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
ENG MUTATED | 0 | 1 | 2
ENG WILD-TYPE | 25 | 10 | 12

'ENG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.03 (Fisher's exact test), Q value = 1

Table S677. Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
ENG MUTATED | 2 | 1 | 0
ENG WILD-TYPE | 6 | 18 | 23

Figure S34. Get High-res Image Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'ENG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S678. Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
ENG MUTATED | 0 | 1 | 2
ENG WILD-TYPE | 21 | 8 | 18

'ENG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0392 (Fisher's exact test), Q value = 1

Table S679. Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
ENG MUTATED | 2 | 0 | 1
ENG WILD-TYPE | 7 | 22 | 18

Figure S35. Get High-res Image Gene #86: 'ENG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PABPC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S680. Gene #87: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
PABPC1 MUTATED | 0 | 2 | 2
PABPC1 WILD-TYPE | 13 | 27 | 12

'PABPC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S681. Gene #87: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
PABPC1 MUTATED | 1 | 1 | 2
PABPC1 WILD-TYPE | 17 | 23 | 12

'PABPC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S682. Gene #87: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
PABPC1 MUTATED | 1 | 1 | 0 | 1
PABPC1 WILD-TYPE | 17 | 11 | 9 | 7

'PABPC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S683. Gene #87: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
PABPC1 MUTATED | 0 | 1 | 2
PABPC1 WILD-TYPE | 4 | 17 | 23

'PABPC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S684. Gene #87: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
PABPC1 MUTATED | 2 | 1 | 1
PABPC1 WILD-TYPE | 23 | 10 | 13

'PABPC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S685. Gene #87: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
PABPC1 MUTATED | 0 | 2 | 2
PABPC1 WILD-TYPE | 8 | 17 | 21

'PABPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S686. Gene #87: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
PABPC1 MUTATED | 2 | 0 | 2
PABPC1 WILD-TYPE | 19 | 9 | 18

'PABPC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S687. Gene #87: 'PABPC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
PABPC1 MUTATED | 0 | 2 | 2
PABPC1 WILD-TYPE | 9 | 20 | 17

'ATG16L2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S688. Gene #88: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
ATG16L2 MUTATED | 0 | 2 | 1
ATG16L2 WILD-TYPE | 13 | 27 | 13

'ATG16L2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S689. Gene #88: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
ATG16L2 MUTATED | 0 | 1 | 2
ATG16L2 WILD-TYPE | 18 | 23 | 12

'ATG16L2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S690. Gene #88: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
ATG16L2 MUTATED | 1 | 0 | 2 | 0
ATG16L2 WILD-TYPE | 17 | 12 | 7 | 8

'ATG16L2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S691. Gene #88: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
ATG16L2 MUTATED | 0 | 1 | 2
ATG16L2 WILD-TYPE | 4 | 17 | 23

'ATG16L2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S692. Gene #88: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
ATG16L2 MUTATED | 1 | 0 | 2
ATG16L2 WILD-TYPE | 24 | 11 | 12

'ATG16L2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S693. Gene #88: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
ATG16L2 MUTATED | 1 | 0 | 2
ATG16L2 WILD-TYPE | 7 | 19 | 21

'ATG16L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S694. Gene #88: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
ATG16L2 MUTATED | 1 | 0 | 2
ATG16L2 WILD-TYPE | 20 | 9 | 18

'ATG16L2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0796 (Fisher's exact test), Q value = 1

Table S695. Gene #88: 'ATG16L2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
ATG16L2 MUTATED | 2 | 1 | 0
ATG16L2 WILD-TYPE | 7 | 21 | 19

'LRCH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S696. Gene #89: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
LRCH1 MUTATED | 1 | 5 | 1
LRCH1 WILD-TYPE | 12 | 24 | 13

'LRCH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S697. Gene #89: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
LRCH1 MUTATED | 1 | 3 | 3
LRCH1 WILD-TYPE | 17 | 21 | 11

'LRCH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 1

Table S698. Gene #89: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
LRCH1 MUTATED | 3 | 1 | 3 | 0
LRCH1 WILD-TYPE | 15 | 11 | 6 | 8

'LRCH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S699. Gene #89: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
LRCH1 MUTATED | 0 | 3 | 4
LRCH1 WILD-TYPE | 4 | 15 | 21

'LRCH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S700. Gene #89: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
LRCH1 MUTATED | 3 | 1 | 3
LRCH1 WILD-TYPE | 22 | 10 | 11

'LRCH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S701. Gene #89: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
LRCH1 MUTATED | 2 | 2 | 3
LRCH1 WILD-TYPE | 6 | 17 | 20

'LRCH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S702. Gene #89: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
LRCH1 MUTATED | 2 | 1 | 4
LRCH1 WILD-TYPE | 19 | 8 | 16

'LRCH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S703. Gene #89: 'LRCH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
LRCH1 MUTATED | 3 | 2 | 2
LRCH1 WILD-TYPE | 6 | 20 | 17

'PLCZ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S704. Gene #90: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
PLCZ1 MUTATED | 0 | 2 | 1
PLCZ1 WILD-TYPE | 13 | 27 | 13

'PLCZ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S705. Gene #90: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
PLCZ1 MUTATED | 0 | 1 | 2
PLCZ1 WILD-TYPE | 18 | 23 | 12

'PLCZ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.243 (Fisher's exact test), Q value = 1

Table S706. Gene #90: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
PLCZ1 MUTATED | 1 | 0 | 2 | 0
PLCZ1 WILD-TYPE | 17 | 12 | 7 | 8

'PLCZ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S707. Gene #90: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
PLCZ1 MUTATED | 0 | 1 | 2
PLCZ1 WILD-TYPE | 4 | 17 | 23

'PLCZ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S708. Gene #90: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
PLCZ1 MUTATED | 1 | 0 | 2
PLCZ1 WILD-TYPE | 24 | 11 | 12

'PLCZ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S709. Gene #90: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
PLCZ1 MUTATED | 0 | 1 | 2
PLCZ1 WILD-TYPE | 8 | 18 | 21

'PLCZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S710. Gene #90: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
PLCZ1 MUTATED | 1 | 0 | 2
PLCZ1 WILD-TYPE | 20 | 9 | 18

'PLCZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S711. Gene #90: 'PLCZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
PLCZ1 MUTATED | 1 | 1 | 1
PLCZ1 WILD-TYPE | 8 | 21 | 18

'TAOK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S712. Gene #91: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
TAOK2 MUTATED | 1 | 4 | 1
TAOK2 WILD-TYPE | 12 | 25 | 13

'TAOK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S713. Gene #91: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
TAOK2 MUTATED | 2 | 3 | 1
TAOK2 WILD-TYPE | 16 | 21 | 13

'TAOK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S714. Gene #91: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
TAOK2 MUTATED | 2 | 2 | 1 | 1
TAOK2 WILD-TYPE | 16 | 10 | 8 | 7

'TAOK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S715. Gene #91: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
TAOK2 MUTATED | 1 | 2 | 3
TAOK2 WILD-TYPE | 3 | 16 | 22

'TAOK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S716. Gene #91: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
TAOK2 MUTATED | 3 | 1 | 2
TAOK2 WILD-TYPE | 22 | 10 | 12

'TAOK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S717. Gene #91: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
TAOK2 MUTATED | 1 | 3 | 2
TAOK2 WILD-TYPE | 7 | 16 | 21

'TAOK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S718. Gene #91: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
TAOK2 MUTATED | 1 | 3 | 2
TAOK2 WILD-TYPE | 20 | 6 | 18

'TAOK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S719. Gene #91: 'TAOK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
TAOK2 MUTATED | 1 | 2 | 3
TAOK2 WILD-TYPE | 8 | 20 | 16

'ZMIZ1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.149 (Fisher's exact test), Q value = 1

Table S720. Gene #92: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
ZMIZ1 MUTATED | 3 | 3 | 0
ZMIZ1 WILD-TYPE | 10 | 26 | 14

'ZMIZ1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.866 (Fisher's exact test), Q value = 1

Table S721. Gene #92: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
ZMIZ1 MUTATED | 2 | 2 | 2
ZMIZ1 WILD-TYPE | 16 | 22 | 12

'ZMIZ1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S722. Gene #92: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
ZMIZ1 MUTATED | 3 | 0 | 1 | 1
ZMIZ1 WILD-TYPE | 15 | 12 | 8 | 7

'ZMIZ1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 1

Table S723. Gene #92: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
ZMIZ1 MUTATED | 1 | 2 | 2
ZMIZ1 WILD-TYPE | 3 | 16 | 23

'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.855 (Fisher's exact test), Q value = 1

Table S724. Gene #92: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
ZMIZ1 MUTATED | 4 | 1 | 1
ZMIZ1 WILD-TYPE | 21 | 10 | 13

'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S725. Gene #92: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
ZMIZ1 MUTATED | 1 | 2 | 3
ZMIZ1 WILD-TYPE | 7 | 17 | 20

'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S726. Gene #92: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
ZMIZ1 MUTATED | 3 | 2 | 1
ZMIZ1 WILD-TYPE | 18 | 7 | 19

'ZMIZ1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S727. Gene #92: 'ZMIZ1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
ZMIZ1 MUTATED | 1 | 3 | 2
ZMIZ1 WILD-TYPE | 8 | 19 | 17

'SYT15 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S728. Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
SYT15 MUTATED | 1 | 4 | 1
SYT15 WILD-TYPE | 12 | 25 | 13

'SYT15 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0617 (Fisher's exact test), Q value = 1

Table S729. Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
SYT15 MUTATED | 1 | 1 | 4
SYT15 WILD-TYPE | 17 | 23 | 10

'SYT15 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S730. Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
SYT15 MUTATED | 3 | 2 | 1 | 0
SYT15 WILD-TYPE | 15 | 10 | 8 | 8

'SYT15 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S731. Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
SYT15 MUTATED | 0 | 3 | 3
SYT15 WILD-TYPE | 4 | 15 | 22

'SYT15 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S732. Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
SYT15 MUTATED | 3 | 1 | 2
SYT15 WILD-TYPE | 22 | 10 | 12

'SYT15 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S733. Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
SYT15 MUTATED | 0 | 3 | 3
SYT15 WILD-TYPE | 8 | 16 | 20

'SYT15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S734. Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
SYT15 MUTATED | 2 | 1 | 3
SYT15 WILD-TYPE | 19 | 8 | 17

'SYT15 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S735. Gene #93: 'SYT15 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
SYT15 MUTATED | 1 | 2 | 3
SYT15 WILD-TYPE | 8 | 20 | 16

'LRTM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S736. Gene #94: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
LRTM1 MUTATED | 0 | 3 | 0
LRTM1 WILD-TYPE | 13 | 26 | 14

'LRTM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S737. Gene #94: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
LRTM1 MUTATED | 0 | 3 | 0
LRTM1 WILD-TYPE | 18 | 21 | 14

'LRTM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00345 (Fisher's exact test), Q value = 1

Table S738. Gene #94: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
LRTM1 MUTATED | 0 | 0 | 0 | 3
LRTM1 WILD-TYPE | 18 | 12 | 9 | 5

Figure S36. Get High-res Image Gene #94: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

'LRTM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.289 (Fisher's exact test), Q value = 1

Table S739. Gene #94: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
LRTM1 MUTATED | 1 | 1 | 1
LRTM1 WILD-TYPE | 3 | 17 | 24

'LRTM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S740. Gene #94: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
LRTM1 MUTATED | 2 | 0 | 1
LRTM1 WILD-TYPE | 23 | 11 | 13

'LRTM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.376 (Fisher's exact test), Q value = 1

Table S741. Gene #94: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
LRTM1 MUTATED | 1 | 0 | 2
LRTM1 WILD-TYPE | 7 | 19 | 21

'LRTM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S742. Gene #94: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
LRTM1 MUTATED | 1 | 1 | 1
LRTM1 WILD-TYPE | 20 | 8 | 19

'LRTM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S743. Gene #94: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
LRTM1 MUTATED | 1 | 2 | 0
LRTM1 WILD-TYPE | 8 | 20 | 19

'TIMM50 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S744. Gene #95: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
TIMM50 MUTATED | 2 | 2 | 0
TIMM50 WILD-TYPE | 11 | 27 | 14

'TIMM50 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S745. Gene #95: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
TIMM50 MUTATED | 1 | 1 | 2
TIMM50 WILD-TYPE | 17 | 23 | 12

'TIMM50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S746. Gene #95: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
TIMM50 MUTATED | 3 | 0 | 1 | 0
TIMM50 WILD-TYPE | 15 | 12 | 8 | 8

'TIMM50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S747. Gene #95: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
TIMM50 MUTATED | 0 | 2 | 2
TIMM50 WILD-TYPE | 4 | 16 | 23

'TIMM50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.799 (Fisher's exact test), Q value = 1

Table S748. Gene #95: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
TIMM50 MUTATED | 3 | 0 | 1
TIMM50 WILD-TYPE | 22 | 11 | 13

'TIMM50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S749. Gene #95: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
TIMM50 MUTATED | 1 | 1 | 2
TIMM50 WILD-TYPE | 7 | 18 | 21

'TIMM50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S750. Gene #95: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
TIMM50 MUTATED | 2 | 1 | 1
TIMM50 WILD-TYPE | 19 | 8 | 19

'TIMM50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S751. Gene #95: 'TIMM50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
TIMM50 MUTATED | 1 | 2 | 1
TIMM50 WILD-TYPE | 8 | 20 | 18

'CCNK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S752. Gene #96: 'CCNK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
CCNK MUTATED | 1 | 3 | 0
CCNK WILD-TYPE | 12 | 26 | 14

'CCNK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S753. Gene #96: 'CCNK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
CCNK MUTATED | 1 | 2 | 1
CCNK WILD-TYPE | 17 | 22 | 13

'CCNK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 1

Table S754. Gene #96: 'CCNK MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
CCNK MUTATED | 2 | 0 | 2 | 0
CCNK WILD-TYPE | 16 | 12 | 7 | 8

'CCNK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S755. Gene #96: 'CCNK MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
CCNK MUTATED | 0 | 2 | 2
CCNK WILD-TYPE | 4 | 16 | 23

'CCNK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S756. Gene #96: 'CCNK MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
CCNK MUTATED | 2 | 0 | 2
CCNK WILD-TYPE | 23 | 11 | 12

'CCNK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S757. Gene #96: 'CCNK MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
CCNK MUTATED | 1 | 2 | 1
CCNK WILD-TYPE | 7 | 17 | 22

'CCNK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.663 (Fisher's exact test), Q value = 1

Table S758. Gene #96: 'CCNK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
CCNK MUTATED | 1 | 1 | 2
CCNK WILD-TYPE | 20 | 8 | 18

'CCNK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.657 (Fisher's exact test), Q value = 1

Table S759. Gene #96: 'CCNK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
CCNK MUTATED | 1 | 1 | 2
CCNK WILD-TYPE | 8 | 21 | 17

'TTK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.126 (Fisher's exact test), Q value = 1

Table S760. Gene #97: 'TTK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
TTK MUTATED | 0 | 5 | 0
TTK WILD-TYPE | 13 | 24 | 14

'TTK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S761. Gene #97: 'TTK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
TTK MUTATED | 0 | 3 | 2
TTK WILD-TYPE | 18 | 21 | 12

'TTK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S762. Gene #97: 'TTK MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
TTK MUTATED | 1 | 1 | 2 | 1
TTK WILD-TYPE | 17 | 11 | 7 | 7

'TTK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S763. Gene #97: 'TTK MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
TTK MUTATED | 1 | 1 | 3
TTK WILD-TYPE | 3 | 17 | 22

'TTK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S764. Gene #97: 'TTK MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
TTK MUTATED | 2 | 1 | 2
TTK WILD-TYPE | 23 | 10 | 12

'TTK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.224 (Fisher's exact test), Q value = 1

Table S765. Gene #97: 'TTK MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
TTK MUTATED | 2 | 2 | 1
TTK WILD-TYPE | 6 | 17 | 22

'TTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0713 (Fisher's exact test), Q value = 1

Table S766. Gene #97: 'TTK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
TTK MUTATED | 0 | 2 | 3
TTK WILD-TYPE | 21 | 7 | 17

'TTK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S767. Gene #97: 'TTK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
TTK MUTATED | 2 | 1 | 2
TTK WILD-TYPE | 7 | 21 | 17

'TMEM175 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S768. Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
TMEM175 MUTATED | 1 | 3 | 0
TMEM175 WILD-TYPE | 12 | 26 | 14

'TMEM175 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S769. Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
TMEM175 MUTATED | 0 | 3 | 1
TMEM175 WILD-TYPE | 18 | 21 | 13

'TMEM175 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S770. Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
TMEM175 MUTATED | 1 | 2 | 1 | 0
TMEM175 WILD-TYPE | 17 | 10 | 8 | 8

'TMEM175 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S771. Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
TMEM175 MUTATED | 0 | 1 | 3
TMEM175 WILD-TYPE | 4 | 17 | 22

'TMEM175 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S772. Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
TMEM175 MUTATED | 1 | 2 | 1
TMEM175 WILD-TYPE | 24 | 9 | 13

'TMEM175 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0273 (Fisher's exact test), Q value = 1

Table S773. Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
TMEM175 MUTATED | 0 | 4 | 0
TMEM175 WILD-TYPE | 8 | 15 | 23

Figure S37. Get High-res Image Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

'TMEM175 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S774. Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
TMEM175 MUTATED | 0 | 1 | 3
TMEM175 WILD-TYPE | 21 | 8 | 17

'TMEM175 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0323 (Fisher's exact test), Q value = 1

Table S775. Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
TMEM175 MUTATED | 0 | 0 | 4
TMEM175 WILD-TYPE | 9 | 22 | 15

Figure S38. Get High-res Image Gene #98: 'TMEM175 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CD93 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S776. Gene #99: 'CD93 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
CD93 MUTATED | 1 | 3 | 1
CD93 WILD-TYPE | 12 | 26 | 13

'CD93 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00748 (Fisher's exact test), Q value = 1

Table S777. Gene #99: 'CD93 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
CD93 MUTATED | 1 | 0 | 4
CD93 WILD-TYPE | 17 | 24 | 10

Figure S39. Get High-res Image Gene #99: 'CD93 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CD93 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S778. Gene #99: 'CD93 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
CD93 MUTATED | 3 | 0 | 1 | 1
CD93 WILD-TYPE | 15 | 12 | 8 | 7

'CD93 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S779. Gene #99: 'CD93 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
CD93 MUTATED | 1 | 3 | 1
CD93 WILD-TYPE | 3 | 15 | 24

'CD93 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.483 (Fisher's exact test), Q value = 1

Table S780. Gene #99: 'CD93 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
CD93 MUTATED | 4 | 0 | 1
CD93 WILD-TYPE | 21 | 11 | 13

'CD93 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S781. Gene #99: 'CD93 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
CD93 MUTATED | 0 | 2 | 3
CD93 WILD-TYPE | 8 | 17 | 20

'CD93 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S782. Gene #99: 'CD93 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
CD93 MUTATED | 2 | 2 | 1
CD93 WILD-TYPE | 19 | 7 | 19

'CD93 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S783. Gene #99: 'CD93 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
CD93 MUTATED | 1 | 2 | 2
CD93 WILD-TYPE | 8 | 20 | 17

'C19ORF55 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.53 (Fisher's exact test), Q value = 1

Table S784. Gene #100: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
C19ORF55 MUTATED | 0 | 2 | 2
C19ORF55 WILD-TYPE | 13 | 27 | 12

'C19ORF55 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0289 (Fisher's exact test), Q value = 1

Table S785. Gene #100: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
C19ORF55 MUTATED | 1 | 0 | 3
C19ORF55 WILD-TYPE | 17 | 24 | 11

Figure S40. Get High-res Image Gene #100: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'C19ORF55 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S786. Gene #100: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
C19ORF55 MUTATED | 2 | 1 | 0 | 0
C19ORF55 WILD-TYPE | 16 | 11 | 9 | 8

'C19ORF55 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S787. Gene #100: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
C19ORF55 MUTATED | 0 | 2 | 1
C19ORF55 WILD-TYPE | 4 | 16 | 24

'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S788. Gene #100: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
C19ORF55 MUTATED | 3 | 1 | 0
C19ORF55 WILD-TYPE | 22 | 10 | 14

'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S789. Gene #100: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
C19ORF55 MUTATED | 0 | 2 | 2
C19ORF55 WILD-TYPE | 8 | 17 | 21

'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.827 (Fisher's exact test), Q value = 1

Table S790. Gene #100: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
C19ORF55 MUTATED | 2 | 1 | 1
C19ORF55 WILD-TYPE | 19 | 8 | 19

'C19ORF55 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S791. Gene #100: 'C19ORF55 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
C19ORF55 MUTATED | 0 | 2 | 2
C19ORF55 WILD-TYPE | 9 | 20 | 17

'MRPL48 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S792. Gene #101: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
MRPL48 MUTATED | 0 | 2 | 1
MRPL48 WILD-TYPE | 13 | 27 | 13

'MRPL48 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.603 (Fisher's exact test), Q value = 1

Table S793. Gene #101: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
MRPL48 MUTATED | 0 | 2 | 1
MRPL48 WILD-TYPE | 18 | 22 | 13

'MRPL48 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S794. Gene #101: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
MRPL48 MUTATED | 1 | 1 | 1 | 0
MRPL48 WILD-TYPE | 17 | 11 | 8 | 8

'MRPL48 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S795. Gene #101: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
MRPL48 MUTATED | 0 | 1 | 2
MRPL48 WILD-TYPE | 4 | 17 | 23

'MRPL48 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S796. Gene #101: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
MRPL48 MUTATED | 1 | 1 | 1
MRPL48 WILD-TYPE | 24 | 10 | 13

'MRPL48 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S797. Gene #101: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
MRPL48 MUTATED | 0 | 3 | 0
MRPL48 WILD-TYPE | 8 | 16 | 23

'MRPL48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.041 (Fisher's exact test), Q value = 1

Table S798. Gene #101: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
MRPL48 MUTATED | 0 | 2 | 1
MRPL48 WILD-TYPE | 21 | 7 | 19

Figure S41. Get High-res Image Gene #101: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

'MRPL48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S799. Gene #101: 'MRPL48 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
MRPL48 MUTATED | 0 | 0 | 3
MRPL48 WILD-TYPE | 9 | 22 | 16

'PVRL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S800. Gene #102: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
PVRL1 MUTATED | 1 | 4 | 0
PVRL1 WILD-TYPE | 12 | 25 | 14

'PVRL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S801. Gene #102: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
PVRL1 MUTATED | 1 | 3 | 1
PVRL1 WILD-TYPE | 17 | 21 | 13

'PVRL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0932 (Fisher's exact test), Q value = 1

Table S802. Gene #102: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
PVRL1 MUTATED | 2 | 0 | 3 | 0
PVRL1 WILD-TYPE | 16 | 12 | 6 | 8

'PVRL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S803. Gene #102: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
PVRL1 MUTATED | 0 | 2 | 3
PVRL1 WILD-TYPE | 4 | 16 | 22

'PVRL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S804. Gene #102: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
PVRL1 MUTATED | 2 | 0 | 3
PVRL1 WILD-TYPE | 23 | 11 | 11

'PVRL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S805. Gene #102: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
PVRL1 MUTATED | 1 | 3 | 1
PVRL1 WILD-TYPE | 7 | 16 | 22

'PVRL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S806. Gene #102: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
PVRL1 MUTATED | 1 | 1 | 3
PVRL1 WILD-TYPE | 20 | 8 | 17

'PVRL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.478 (Fisher's exact test), Q value = 1

Table S807. Gene #102: 'PVRL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
PVRL1 MUTATED | 1 | 1 | 3
PVRL1 WILD-TYPE | 8 | 21 | 16

'ACIN1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S808. Gene #103: 'ACIN1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
ACIN1 MUTATED | 0 | 2 | 1
ACIN1 WILD-TYPE | 13 | 27 | 13

'ACIN1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S809. Gene #103: 'ACIN1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
ACIN1 MUTATED | 0 | 1 | 2
ACIN1 WILD-TYPE | 18 | 23 | 12

'ACIN1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.589 (Fisher's exact test), Q value = 1

Table S810. Gene #103: 'ACIN1 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
ACIN1 MUTATED | 2 | 1 | 0
ACIN1 WILD-TYPE | 23 | 10 | 14

'ACIN1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.755 (Fisher's exact test), Q value = 1

Table S811. Gene #103: 'ACIN1 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
ACIN1 MUTATED | 0 | 2 | 1
ACIN1 WILD-TYPE | 8 | 17 | 22

'ACIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S812. Gene #103: 'ACIN1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
ACIN1 MUTATED | 1 | 1 | 1
ACIN1 WILD-TYPE | 20 | 8 | 19

'ACIN1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S813. Gene #103: 'ACIN1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
ACIN1 MUTATED | 0 | 1 | 2
ACIN1 WILD-TYPE | 9 | 21 | 17

'MAML3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S814. Gene #104: 'MAML3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
MAML3 MUTATED | 2 | 4 | 1
MAML3 WILD-TYPE | 11 | 25 | 13

'MAML3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S815. Gene #104: 'MAML3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
MAML3 MUTATED | 1 | 2 | 4
MAML3 WILD-TYPE | 17 | 22 | 10

'MAML3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S816. Gene #104: 'MAML3 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
MAML3 MUTATED | 4 | 1 | 2 | 0
MAML3 WILD-TYPE | 14 | 11 | 7 | 8

'MAML3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S817. Gene #104: 'MAML3 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
MAML3 MUTATED | 0 | 4 | 3
MAML3 WILD-TYPE | 4 | 14 | 22

'MAML3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S818. Gene #104: 'MAML3 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
MAML3 MUTATED | 4 | 0 | 3
MAML3 WILD-TYPE | 21 | 11 | 11

'MAML3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S819. Gene #104: 'MAML3 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
MAML3 MUTATED | 0 | 3 | 4
MAML3 WILD-TYPE | 8 | 16 | 19

'MAML3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S820. Gene #104: 'MAML3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
MAML3 MUTATED | 3 | 1 | 3
MAML3 WILD-TYPE | 18 | 8 | 17

'MAML3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S821. Gene #104: 'MAML3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
MAML3 MUTATED | 1 | 3 | 3
MAML3 WILD-TYPE | 8 | 19 | 16

'EDC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S822. Gene #105: 'EDC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
EDC4 MUTATED | 1 | 3 | 1
EDC4 WILD-TYPE | 12 | 26 | 13

'EDC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.712 (Fisher's exact test), Q value = 1

Table S823. Gene #105: 'EDC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
EDC4 MUTATED | 1 | 2 | 2
EDC4 WILD-TYPE | 17 | 22 | 12

'EDC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.495 (Fisher's exact test), Q value = 1

Table S824. Gene #105: 'EDC4 MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
EDC4 MUTATED | 2 | 0 | 0 | 1
EDC4 WILD-TYPE | 16 | 12 | 9 | 7

'EDC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S825. Gene #105: 'EDC4 MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
EDC4 MUTATED | 0 | 2 | 1
EDC4 WILD-TYPE | 4 | 16 | 24

'EDC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S826. Gene #105: 'EDC4 MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
EDC4 MUTATED | 3 | 1 | 1
EDC4 WILD-TYPE | 22 | 10 | 13

'EDC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S827. Gene #105: 'EDC4 MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
EDC4 MUTATED | 1 | 2 | 2
EDC4 WILD-TYPE | 7 | 17 | 21

'EDC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.384 (Fisher's exact test), Q value = 1

Table S828. Gene #105: 'EDC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
EDC4 MUTATED | 2 | 2 | 1
EDC4 WILD-TYPE | 19 | 7 | 19

'EDC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S829. Gene #105: 'EDC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
EDC4 MUTATED | 1 | 2 | 2
EDC4 WILD-TYPE | 8 | 20 | 17

'SETD1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.795 (Fisher's exact test), Q value = 1

Table S830. Gene #106: 'SETD1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 13 | 29 | 14
SETD1A MUTATED | 1 | 2 | 0
SETD1A WILD-TYPE | 12 | 27 | 14

'SETD1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S831. Gene #106: 'SETD1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 18 | 24 | 14
SETD1A MUTATED | 1 | 1 | 1
SETD1A WILD-TYPE | 17 | 23 | 13

'SETD1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S832. Gene #106: 'SETD1A MUTATION STATUS' versus Molecular Subtype #3: 'MRNASEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3 | CLUS_4
--- | --- | --- | --- | ---
ALL | 18 | 12 | 9 | 8
SETD1A MUTATED | 1 | 1 | 1 | 0
SETD1A WILD-TYPE | 17 | 11 | 8 | 8

'SETD1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S833. Gene #106: 'SETD1A MUTATION STATUS' versus Molecular Subtype #4: 'MRNASEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 4 | 18 | 25
SETD1A MUTATED | 0 | 1 | 2
SETD1A WILD-TYPE | 4 | 17 | 23

'SETD1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S834. Gene #106: 'SETD1A MUTATION STATUS' versus Molecular Subtype #5: 'MIRSEQ_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 25 | 11 | 14
SETD1A MUTATED | 1 | 1 | 1
SETD1A WILD-TYPE | 24 | 10 | 13

'SETD1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S835. Gene #106: 'SETD1A MUTATION STATUS' versus Molecular Subtype #6: 'MIRSEQ_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 8 | 19 | 23
SETD1A MUTATED | 0 | 1 | 2
SETD1A WILD-TYPE | 8 | 18 | 21

'SETD1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S836. Gene #106: 'SETD1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_MATURE_CNMF'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 21 | 9 | 20
SETD1A MUTATED | 1 | 1 | 1
SETD1A WILD-TYPE | 20 | 8 | 19

'SETD1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.776 (Fisher's exact test), Q value = 1

Table S837. Gene #106: 'SETD1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients | CLUS_1 | CLUS_2 | CLUS_3
--- | --- | --- | ---
ALL | 9 | 22 | 19
SETD1A MUTATED | 1 | 1 | 1
SETD1A WILD-TYPE | 8 | 21 | 18

Methods & Data
Input

- Mutation data file = transformed.cor.cli.txt

- Molecular subtypes file = PAAD-TP.transferedmergedcluster.txt

- Number of patients = 57

- Number of significantly mutated genes = 106

- Number of Molecular subtypes = 8

- Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

Download Results

In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.

- Analysis Results (MD5 checksum)

- Auxiliary Data (MD5 checksum)

- MAGE-TAB File (MD5 checksum)

References
[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)
[2] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)
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