Clinical Features	Time to Death		AGE		PATHOLOGY.T.STAGE		PATHOLOGY.N.STAGE		COMPLETENESS.OF.RESECTION		NUMBER.OF.LYMPH.NODES		GLEASON_SCORE_COMBINED		GLEASON_SCORE_PRIMARY		GLEASON_SCORE_SECONDARY		GLEASON_SCORE		PSA_RESULT_PREOP		DAYS_TO_PREOP_PSA		PSA_VALUE		DAYS_TO_PSA	
	nCNV (%)	nWild-Type	logrank test_P	logrank test_Q	t-test_P	t-test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	t-test_P	t-test_Q	t-test_P	t-test_Q	t-test_P	t-test_Q	t-test_P	t-test_Q	t-test_P	t-test_Q	t-test_P	t-test_Q	t-test_P	t-test_Q	t-test_P	t-test_Q	t-test_P	t-test_Q
amp_1q21.3	11 (6%)	173	100	1	0.74843	1	0.52514	1	0.32712	1	0.74237	1	0.52226	1	0.078067	1	0.091353	1	0.24074	1	0.1013	1	0.34637	1	0.92335	1	0.58241	1	0.76495	1
amp_3q22.1	22 (12%)	162	100	1	0.07033	1	0.0040669	1	0.70669	1	0.20536	1	0.47514	1	0.14995	1	0.020146	1	0.88881	1	0.015833	1	0.1646	1	0.15207	1	0.014219	1	0.20863	1
amp_3q26.2	29 (16%)	155	100	1	0.1999	1	0.036294	1	0.50057	1	1	1	0.31344	1	0.33417	1	0.085487	1	0.76385	1	0.086676	1	0.11345	1	0.4376	1	0.62433	1	0.93691	1
amp_4q13.3	4 (2%)	180	100	1	0.077828	1	0.14205	1	0.3629	1	0.25866	1	0.82053	1	0.14543	1	0.27884	1	0.085932	1	0.15565	1	0.29645	1	0.53881	1	0.71983	1	0.50709	1
amp_7p15.3	35 (19%)	149	100	1	0.30941	1	0.013561	1	0.32589	1	0.018628	1	0.27152	1	0.024565	1	0.047324	1	0.18618	1	0.031021	1	0.032767	1	0.47209	1	0.46853	1	0.15107	1
amp_8p12	13 (7%)	171	100	1	0.66639	1	0.41345	1	0.61799	1	1	1	0.8533	1	0.03071	1	0.060429	1	0.11071	1	0.021204	1	0.06783	1	0.39887	1	0.046436	1	0.25523	1
amp_8p11.22	17 (9%)	167	100	1	0.39627	1	0.38904	1	0.056237	1	1	1	0.27759	1	0.057894	1	0.02632	1	0.43916	1	0.048545	1	0.14122	1	0.43011	1	0.12018	1	0.46203	1
amp_8q21.3	48 (26%)	136	100	1	0.078197	1	0.042504	1	0.25894	1	0.73142	1	0.55359	1	0.00066081	0.486	0.00079563	0.577	0.14616	1	0.00071215	0.523	0.031536	1	0.27783	1	0.41126	1	0.082729	1
amp_8q24.21	47 (26%)	137	100	1	0.24304	1	0.052397	1	0.085162	1	0.92857	1	0.26985	1	0.00027846	0.207	0.00046053	0.34	0.096317	1	0.00059288	0.436	0.059786	1	0.69728	1	0.40194	1	0.16156	1
amp_9q34.3	18 (10%)	166	100	1	0.71009	1	0.024957	1	0.00042662	0.316	0.42056	1	0.054953	1	0.0018314	1	0.0008281	0.6	0.071272	1	0.0017838	1	0.12159	1	0.45577	1	0.16917	1	0.75457	1
amp_11q13.3	9 (5%)	175	100	1	0.74296	1	0.044537	1	0.055385	1	0.49607	1	0.29064	1	0.11962	1	0.0099619	1	0.75613	1	0.082629	1	0.82908	1	0.22493	1	0.08005	1	0.47126	1
amp_12q24.32	7 (4%)	177	100	1	0.94304	1	0.16672	1	0.16068	1	0.26972	1	0.38871	1	0.094985	1	0.025153	1	0.8105	1	0.034834	1	0.28187	1	0.14822	1	0.95173	1	0.14206	1
amp_14q21.1	8 (4%)	176	100	1	0.0012872	0.926	0.43944	1	0.54932	1	0.45552	1	0.76339	1	0.1538	1	0.56837	1	0.1742	1	0.023339	1	0.91355	1	0.52452	1	0.89389	1	0.35952	1
amp_15q11.2	5 (3%)	179	100	1	0.0053899	1	0.70407	1	1	1	0.6212	1	0.00078526	0.572	0.75764	1	0.62535	1	0.46671	1	0.50006	1	0.01112	1	0.82634	1	0.00048357	0.357	0.52114	1
amp_20q13.33	12 (7%)	172	100	1	0.0037836	1	0.00027206	0.202	0.36712	1	0.054048	1	0.00077889	0.57	0.048731	1	0.00071713	0.526	0.87913	1	0.022225	1	0.21133	1	0.47039	1	0.45191	1	0.12233	1
amp_xp22.11	7 (4%)	177	100	1	0.44589	1	0.55653	1	0.54932	1	1	1	0.73848	1	0.5965	1	0.41687	1	0.67848	1	0.69718	1	0.3565	1	0.53284	1	0.00021861	0.163	0.0060214	1
amp_xp22.11	7 (4%)	177	100	1	0.058444	1	0.55653	1	0.54932	1	1	1	0.73848	1	0.5965	1	0.17883	1	0.30399	1	0.9474	1	0.25748	1	0.15186	1	0.00020651	0.154	0.2527	1
amp_xp21.1	6 (3%)	178	100	1	0.47886	1	0.34489	1	0.4938	1	0.65034	1	0.90076	1	0.84537	1	0.57613	1	0.56779	1	0.59392	1	0.41374	1	0.28343	1	0.00026639	0.198	0.56356	1
amp_xq21.1	7 (4%)	177	100	1	0.66952	1	0.55653	1	0.54932	1	0.42452	1	0.73848	1	0.5965	1	0.63597	1	0.8105	1	0.49282	1	0.9614	1	0.34816	1	0.00019328	0.145	0.86887	1
amp_xq21.1	5 (3%)	179	100	1	0.30666	1	0.4611	1	0.086962	1	0.6212	1	0.3408	1	0.44202	1	0.62535	1	0.54135	1	0.50006	1	0.42191	1	0.16942	1	0.00026134	0.195	0.36121	1
amp_xq21.31	5 (3%)	179	100	1	0.21804	1	1	1	1	1	0.6212	1	0.00078526	0.572	0.3268	1	1.3691e-26	1.03e-23	0.98977	1	0.64621	1	0.44345	1	0.34098	1	0.47012	1	0.9157	1
amp_xq25	3 (2%)	181	100	1	7.8066e-09	5.88e-06	1	1	1	1	1	1	0.00078698	0.572	0.6041	1	0.61531	1	0.75131	1	0.64136	1	0.69509	1	0.42682	1	NA	NA	NA	NA
amp_xq25	6 (3%)	178	100	1	0.76939	1	0.73918	1	0.4938	1	0.40827	1	0.90076	1	0.3739	1	0.9063	1	0.26717	1	0.59392	1	0.85542	1	0.50434	1	0.00019431	0.146	0.42606	1
amp_xq27.1	9 (5%)	175	100	1	0.27725	1	1	1	1	1	1	1	0.0007826	0.571	0.84466	1	0.64224	1	0.59282	1	0.69877	1	0.073926	1	0.12132	1	0.00057668	0.425	0.22991	1
del_1p31.3	24 (13%)	160	100	1	0.99495	1	0.23556	1	0.46804	1	0.19727	1	0.7311	1	0.023566	1	0.14781	1	0.044399	1	0.040137	1	0.44187	1	0.62295	1	0.77995	1	0.14114	1
del_1p13.3	19 (10%)	165	100	1	0.4276	1	0.18577	1	1	1	0.64667	1	0.9421	1	0.11982	1	0.108	1	0.52681	1	0.1787	1	0.96363	1	0.48936	1	0.55304	1	0.8745	1
del_1q23.1	8 (4%)	176	100	1	0.52002	1	1	1	1	1	1	1	0.0007835	0.571	0.54223	1	0.4227	1	0.78315	1	0.86237	1	0.28553	1	0.10147	1	0.089679	1	0.00045031	0.333
del_1q42.2	15 (8%)	169	100	1	0.3232	1	0.24454	1	0.19886	1	0.59019	1	0.47501	1	0.67367	1	0.42467	1	0.61355	1	0.17438	1	0.27472	1	0.65717	1	0.44189	1	0.94896	1
del_2p22.1	11 (6%)	173	100	1	0.83239	1	0.23739	1	0.01797	1	0.49607	1	0.20924	1	0.028937	1	0.074682	1	0.05891	1	0.036608	1	0.83639	1	0.60797	1	0.64289	1	0.37549	1
del_2q22.1	23 (12%)	161	100	1	0.01904	1	0.6145	1	1	1	0.59618	1	0.59458	1	0.17859	1	0.0010518	0.759	0.31014	1	0.12936	1	0.78564	1	0.051613	1	0.037256	1	0.65184	1
del_3p13	28 (15%)	156	100	1	0.27286	1	0.34659	1	1	1	0.38891	1	0.75951	1	0.91105	1	0.78803	1	0.69835	1	0.70746	1	0.66438	1	0.85174	1	0.39787	1	0.64183	1
del_3q29	10 (5%)	174	100	1	0.12104	1	1	1	1	1	1	1	0.95479	1	0.85114	1	0.7816	1	0.97386	1	0.97638	1	0.56052	1	0.8629	1	0.00035725	0.265	0.62193	1
del_4q27	17 (9%)	167	100	1	0.026348	1	0.1139	1	0.67824	1	0.16053	1	0.50357	1	0.2352	1	0.2262	1	0.58307	1	0.153	1	0.61416	1	0.23579	1	0.00016165	0.121	0.21105	1
del_5q11.2	26 (14%)	158	100	1	0.27928	1	0.0036674	1	0.00077862	0.57	1	1	0.050335	1	0.005019	1	0.015634	1	0.047158	1	0.009384	1	0.087523	1	0.7661	1	0.50028	1	0.21173	1
del_5q21.1	32 (17%)	152	100	1	0.045555	1	0.93527	1	0.10057	1	1	1	0.25098	1	0.061356	1	0.0038775	1	0.91242	1	0.085052	1	0.53502	1	0.70956	1	0.40295	1	0.78963	1
del_6q14.3	55 (30%)	129	100	1	0.09213	1	0.67011	1	0.0054143	1	0.06541	1	0.013624	1	0.0027236	1	0.00093126	0.673	0.39556	1	0.0037758	1	0.014609	1	0.2077	1	0.076626	1	0.99004	1
del_7q36.1	9 (5%)	175	100	1	0.86755	1	0.62495	1	0.16068	1	1	1	0.3907	1	0.21802	1	0.64224	1	0.20131	1	0.57555	1	0.65828	1	0.23241	1	0.00014884	0.112	0.34668	1
del_8p21.3	106 (58%)	78	100	1	0.43442	1	0.00109	0.786	0.065838	1	0.87877	1	0.013678	1	0.46021	1	0.0014842	1	0.040075	1	0.55302	1	0.0011387	0.82	0.27807	1	0.73137	1	0.084832	1
del_8p11.21	61 (33%)	123	100	1	0.081118	1	0.1246	1	1	1	0.003618	1	0.76493	1	0.3705	1	0.1676	1	0.013897	1	0.24581	1	0.21827	1	0.14663	1	0.14714	1	0.045992	1
del_9p23	17 (9%)	167	100	1	0.4711	1	0.38904	1	0.020112	1	0.64667	1	0.167	1	0.064378	1	0.036563	1	0.39571	1	0.12954	1	0.46888	1	0.43824	1	0.80376	1	0.99394	1
del_10q23.31	66 (36%)	118	100	1	0.93081	1	0.054542	1	0.0064931	1	0.4457	1	0.19121	1	0.11656	1	0.20459	1	0.38037	1	0.02823	1	0.92781	1	0.33919	1	0.19226	1	0.15151	1
del_11q23.2	17 (9%)	167	100	1	0.69726	1	0.0098842	1	1	1	0.48295	1	0.11374	1	0.5043	1	0.48426	1	0.83952	1	0.34915	1	0.45169	1	0.51234	1	0.37079	1	0.70415	1
del_12p13.1	38 (21%)	146	100	1	0.78095	1	0.32604	1	0.071274	1	0.42248	1	0.39771	1	0.15214	1	0.041143	1	0.9662	1	0.14676	1	0.70912	1	0.25776	1	0.90859	1	0.71091	1
del_13q14.13	81 (44%)	103	100	1	0.031451	1	0.65681	1	0.30259	1	0.30153	1	0.23851	1	0.15604	1	0.33809	1	0.36765	1	0.047721	1	0.020835	1	0.601	1	0.75081	1	0.82664	1
del_13q22.1	68 (37%)	116	100	1	0.023922	1	0.14749	1	0.069055	1	0.80423	1	0.12817	1	0.087402	1	0.20118	1	0.31959	1	0.012072	1	0.0067406	1	0.16523	1	0.87373	1	0.1092	1
del_15q21.3	18 (10%)	166	100	1	0.7104	1	0.075607	1	0.020112	1	0.53878	1	0.12231	1	0.005791	1	0.0032893	1	0.18885	1	0.0063314	1	0.83902	1	0.35228	1	0.7836	1	0.55708	1
del_16q22.3	63 (34%)	121	100	1	0.23893	1	0.02284	1	0.18353	1	0.93038	1	0.12268	1	0.017232	1	0.0032286	1	0.63059	1	0.012056	1	0.15519	1	0.59891	1	0.062069	1	0.6975	1
del_16q23.3	74 (40%)	110	100	1	0.27621	1	0.033375	1	0.44581	1	1	1	0.21827	1	0.0097676	1	0.0048285	1	0.43871	1	0.0086348	1	0.30229	1	0.72962	1	0.049312	1	0.96217	1
del_17p13.1	47 (26%)	137	100	1	0.75411	1	0.021747	1	0.0070374	1	0.92778	1	0.07208	1	0.011294	1	0.0058502	1	0.34318	1	0.0081797	1	0.1634	1	0.82776	1	0.10872	1	0.58523	1
del_17q21.31	36 (20%)	148	100	1	0.88545	1	0.54935	1	0.74836	1	0.2238	1	0.69503	1	0.50453	1	0.38684	1	0.90236	1	0.46791	1	0.19328	1	0.6212	1	0.92275	1	0.52234	1
del_18q22.1	49 (27%)	135	100	1	0.77317	1	0.26943	1	0.39567	1	0.34495	1	0.57928	1	0.020272	1	0.077361	1	0.10832	1	0.013178	1	0.39878	1	0.59631	1	0.46592	1	0.60081	1
del_18q23	56 (30%)	128	100	1	0.35194	1	0.15431	1	0.052302	1	0.18983	1	0.17372	1	0.010371	1	0.10346	1	0.035507	1	0.0046263	1	0.36072	1	0.68094	1	0.5572	1	0.47567	1
del_21q22.2	19 (10%)	165	100	1	0.2337	1	0.055556	1	0.0023738	1	1	1	0.060242	1	0.53631	1	0.72239	1	0.48274	1	0.65651	1	0.37666	1	0.3511	1	0.24138	1	0.62155	1
del_21q22.3	55 (30%)	129	100	1	0.95879	1	0.014627	1	0.0035791	1	0.30693	1	0.050675	1	0.24233	1	0.29259	1	0.54342	1	0.36808	1	0.25327	1	0.064278	1	0.3056	1	0.46144	1