Clinical Features MRNA_CNMF MRNA_CHIERARCHICAL CN_CNMF METHLYATION_CNMF RPPA_CNMF RPPA_CHIERARCHICAL MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Chi-square test_P Chi-square test_Q 1p gain 12 (7%) 150 0.51093 1 0.71562 1 0.32252 1 0.46694 1 0.032061 1 0.015369 1 0.84702 1 1 1 0.97749 1 1 1 0.93159 1 0.85424 1 1q gain 32 (20%) 130 0.67102 1 1 1 0.019054 1 0.69926 1 0.03514 1 0.25733 1 0.86991 1 0.92343 1 0.61373 1 0.66445 1 0.14882 1 0.32414 1 2p gain 39 (24%) 123 0.50643 1 0.54034 1 0.05558 1 0.11276 1 0.64848 1 0.90873 1 0.047789 1 0.091015 1 0.2586 1 0.024923 1 0.89767 1 0.033235 1 2q gain 41 (25%) 121 0.08736 1 0.12384 1 0.029657 1 0.089523 1 0.69303 1 0.94481 1 0.022762 1 0.056328 1 0.25679 1 0.13997 1 0.53258 1 0.008534 1 3p gain 27 (17%) 135 1 1 0.79978 1 0.21612 1 0.58789 1 0.089427 1 0.2487 1 0.48426 1 0.5599 1 0.42038 1 0.091923 1 0.63395 1 0.59402 1 3q gain 34 (21%) 128 0.60488 1 1 1 0.091353 1 0.93395 1 0.25059 1 0.090473 1 0.48078 1 0.34598 1 0.24373 1 0.18676 1 0.93407 1 0.84115 1 4p gain 9 (6%) 153 1 1 0.17071 1 0.96269 1 1 1 0.088098 1 0.093051 1 0.68994 1 0.15444 1 0.11529 1 0.3089 1 0.60114 1 0.040368 1 4q gain 5 (3%) 157 0.29668 1 0.44872 1 0.98575 1 NA NA 0.21921 1 0.58714 1 1 1 1 1 0.84267 1 0.84283 1 NA NA NA NA 5p gain 34 (21%) 128 0.1813 1 0.48542 1 0.043309 1 0.12443 1 0.19786 1 0.47306 1 0.033784 1 0.044848 1 0.17562 1 0.72526 1 0.20198 1 0.50362 1 5q gain 22 (14%) 140 0.24333 1 0.42106 1 0.40733 1 0.031948 1 0.080097 1 0.68919 1 0.10281 1 0.087429 1 0.37356 1 0.72773 1 0.25346 1 0.17621 1 6p gain 40 (25%) 122 0.32525 1 0.27379 1 8.5928e-05 0.0775 0.0030939 1 0.76747 1 0.35727 1 0.82825 1 0.46497 1 0.25778 1 0.64445 1 0.40953 1 0.69329 1 6q gain 35 (22%) 127 0.67102 1 0.1628 1 2.8582e-05 0.0259 0.025184 1 0.82965 1 0.51604 1 0.60594 1 0.33811 1 0.39819 1 0.43731 1 0.76824 1 0.7197 1 7p gain 100 (62%) 62 0.0023878 1 0.0052751 1 7.0937e-06 0.00646 0.0027437 1 0.48905 1 0.71244 1 0.0038786 1 0.00017247 0.155 0.052378 1 0.019969 1 0.036869 1 0.070531 1 7q gain 83 (51%) 79 0.043951 1 0.043931 1 7.5354e-05 0.068 0.20227 1 0.59494 1 0.92694 1 0.069453 1 0.026003 1 0.49546 1 0.46218 1 0.37658 1 0.50164 1 8p gain 39 (24%) 123 0.58562 1 0.35679 1 0.015065 1 0.61707 1 0.299 1 0.30544 1 0.0283 1 0.0934 1 0.81936 1 0.16872 1 0.18938 1 0.82666 1 8q gain 88 (54%) 74 0.0068393 1 0.035045 1 3.8474e-05 0.0348 0.050449 1 0.51912 1 0.84052 1 0.077068 1 0.13096 1 0.25683 1 0.12229 1 0.86812 1 0.31886 1 9p gain 42 (26%) 120 0.015755 1 0.13829 1 0.62907 1 0.21874 1 0.66722 1 0.31829 1 0.77785 1 0.55124 1 0.28555 1 0.79924 1 0.12958 1 0.47451 1 9q gain 33 (20%) 129 0.015488 1 0.14117 1 0.3217 1 0.51504 1 0.59722 1 0.30921 1 1 1 0.71504 1 0.72694 1 0.70779 1 0.30313 1 0.57408 1 10p gain 12 (7%) 150 1 1 0.75322 1 0.36662 1 0.32139 1 0.66662 1 0.73615 1 0.32503 1 0.26115 1 0.54528 1 1 1 0.3866 1 0.089508 1 10q gain 6 (4%) 156 0.51712 1 0.78746 1 0.29681 1 0.78361 1 1 1 0.84151 1 0.53363 1 0.095242 1 0.54393 1 1 1 NA NA NA NA 11p gain 30 (19%) 132 0.13452 1 0.18694 1 0.020932 1 0.24302 1 0.82965 1 0.58341 1 0.23533 1 0.35956 1 0.034359 1 0.18195 1 0.12763 1 0.48959 1 11q gain 25 (15%) 137 0.23872 1 0.22265 1 0.00079742 0.714 0.017957 1 0.56261 1 0.43102 1 0.086612 1 0.34557 1 0.023299 1 0.47978 1 0.2313 1 0.97993 1 12p gain 33 (20%) 129 0.64862 1 1 1 0.0010468 0.935 0.71657 1 0.18035 1 0.08052 1 0.48933 1 0.28409 1 0.35151 1 0.38958 1 0.37995 1 0.50716 1 12q gain 23 (14%) 139 0.91177 1 0.42106 1 0.04702 1 0.33479 1 0.35577 1 0.085683 1 0.84002 1 0.25103 1 0.35237 1 0.46659 1 0.069191 1 0.099077 1 13q gain 110 (68%) 52 0.29265 1 0.76784 1 0.00014835 0.134 0.13186 1 0.82091 1 0.20982 1 0.39904 1 0.00057887 0.519 0.0047225 1 0.037342 1 0.19386 1 0.40127 1 14q gain 8 (5%) 154 0.83204 1 0.81966 1 0.29303 1 0.67782 1 0.51961 1 0.50548 1 0.22163 1 0.62997 1 0.038836 1 1 1 NA NA NA NA 15q gain 3 (2%) 159 NA NA NA NA 0.54693 1 0.47526 1 NA NA NA NA 0.6021 1 0.64894 1 NA NA NA NA NA NA NA NA 16p gain 39 (24%) 123 0.15932 1 0.7201 1 0.003522 1 0.49289 1 0.92491 1 0.99409 1 0.36808 1 0.85854 1 0.14847 1 0.44643 1 0.061716 1 0.46719 1 16q gain 39 (24%) 123 0.052273 1 0.6209 1 3.9618e-05 0.0358 0.63941 1 1 1 0.94993 1 0.066895 1 0.45545 1 0.02502 1 0.10907 1 0.025765 1 0.35795 1 17p gain 8 (5%) 154 0.10994 1 0.20833 1 0.057346 1 0.2878 1 1 1 0.75947 1 0.52878 1 0.92166 1 0.5198 1 0.8702 1 0.22776 1 0.57879 1 17q gain 30 (19%) 132 0.19394 1 0.49089 1 0.00048386 0.435 0.45076 1 0.8526 1 0.8965 1 1 1 0.81576 1 0.074452 1 0.89996 1 0.41426 1 0.43288 1 18p gain 8 (5%) 154 0.51712 1 1 1 0.0017827 1 0.85115 1 0.80667 1 0.65151 1 0.71652 1 0.86891 1 0.5937 1 0.88376 1 0.62225 1 0.60139 1 18q gain 6 (4%) 156 NA NA NA NA 0.044114 1 0.45682 1 0.49218 1 0.66527 1 0.74815 1 0.81885 1 0.51236 1 0.50938 1 0.62225 1 0.60139 1 19p gain 31 (19%) 131 0.068003 1 0.097375 1 0.0077224 1 0.92249 1 0.55585 1 0.38662 1 0.69961 1 0.9117 1 0.10837 1 0.7246 1 0.66451 1 0.57417 1 19q gain 30 (19%) 132 0.078042 1 0.10407 1 0.011949 1 0.77571 1 0.93675 1 0.34873 1 0.54661 1 0.69439 1 0.3413 1 0.63539 1 0.25506 1 0.11906 1 20p gain 104 (64%) 58 0.094552 1 0.24843 1 0.37795 1 0.67942 1 0.061495 1 0.72427 1 0.070502 1 0.16546 1 0.44166 1 0.041207 1 0.5566 1 0.035218 1 20q gain 142 (88%) 20 0.0077699 1 0.37582 1 0.0009726 0.87 0.35896 1 0.16465 1 0.11585 1 0.5509 1 0.0013755 1 0.09276 1 0.1995 1 0.33822 1 0.36903 1 21q gain 10 (6%) 152 0.53812 1 0.048729 1 0.20255 1 0.87483 1 0.62086 1 0.51498 1 0.64096 1 0.94691 1 0.25272 1 0.71631 1 0.69525 1 0.49054 1 22q gain 9 (6%) 153 0.72868 1 0.27969 1 0.34098 1 1 1 0.42412 1 0.54257 1 0.32503 1 0.93791 1 0.97508 1 1 1 0.68777 1 0.52758 1 xq gain 32 (20%) 130 0.099093 1 0.12384 1 0.074898 1 0.29892 1 0.79252 1 0.59032 1 0.24798 1 0.85326 1 0.96199 1 0.83769 1 0.71358 1 0.69614 1 1p loss 44 (27%) 118 0.64862 1 0.0042433 1 0.00071669 0.642 0.059189 1 0.90616 1 0.2631 1 0.69866 1 0.94943 1 0.42893 1 0.29317 1 0.90535 1 0.84356 1 1q loss 25 (15%) 137 0.91177 1 0.077087 1 0.026378 1 0.02745 1 0.67417 1 0.3576 1 0.87004 1 1 1 0.60566 1 0.11803 1 0.80428 1 0.11668 1 2p loss 11 (7%) 151 0.63847 1 0.56595 1 0.017224 1 0.78361 1 0.90723 1 0.70799 1 0.30063 1 0.3416 1 0.55999 1 0.73471 1 1 1 0.75448 1 2q loss 6 (4%) 156 1 1 1 1 0.17487 1 NA NA 0.10197 1 0.45481 1 0.57262 1 0.1457 1 0.30912 1 0.54909 1 NA NA NA NA 3p loss 15 (9%) 147 1 1 0.22897 1 0.13746 1 0.83649 1 0.25482 1 0.45801 1 0.28002 1 0.018287 1 0.48523 1 0.262 1 0.11489 1 0.27417 1 3q loss 10 (6%) 152 0.51712 1 0.44872 1 0.050845 1 0.41257 1 0.32498 1 0.51194 1 0.15094 1 0.050114 1 0.68726 1 0.22196 1 0.2902 1 0.30735 1 4p loss 58 (36%) 104 0.61838 1 0.15364 1 2.3011e-05 0.0209 0.011752 1 0.95578 1 0.36806 1 0.92104 1 0.90164 1 0.97267 1 0.01542 1 0.53421 1 0.21176 1 4q loss 65 (40%) 97 0.78647 1 0.21745 1 1.4715e-05 0.0134 0.0058899 1 0.79766 1 0.57939 1 0.90266 1 0.77714 1 0.80769 1 0.08286 1 0.90931 1 0.65868 1 5p loss 26 (16%) 136 0.23872 1 0.2772 1 0.2493 1 0.47009 1 0.48263 1 0.23583 1 0.74364 1 0.52178 1 0.62482 1 0.15354 1 0.31519 1 0.41596 1 5q loss 40 (25%) 122 0.092932 1 0.027837 1 0.0098068 1 0.45313 1 1 1 0.91338 1 1 1 0.93912 1 0.94587 1 0.077589 1 0.63588 1 0.70372 1 6p loss 13 (8%) 149 0.54396 1 0.68094 1 0.75992 1 0.16597 1 0.31048 1 0.41486 1 1 1 0.53559 1 0.44415 1 0.34991 1 0.3866 1 0.37128 1 6q loss 22 (14%) 140 0.15771 1 0.13154 1 0.073073 1 0.54874 1 0.41404 1 0.9318 1 0.14618 1 0.28855 1 0.27587 1 0.20614 1 0.17155 1 0.62729 1 7q loss 3 (2%) 159 NA NA NA NA 0.23751 1 NA NA 0.78507 1 0.23696 1 0.79789 1 0.82032 1 0.66881 1 0.74803 1 NA NA NA NA 8p loss 75 (46%) 87 0.1682 1 0.77338 1 0.020806 1 0.61082 1 0.66987 1 0.43724 1 0.20706 1 0.23255 1 0.83132 1 0.56024 1 0.018655 1 0.30344 1 8q loss 11 (7%) 151 0.17819 1 0.23567 1 0.33241 1 1 1 0.79527 1 0.6482 1 0.52599 1 0.26542 1 0.89585 1 0.43635 1 0.74274 1 0.68791 1 9p loss 22 (14%) 140 0.63365 1 0.62362 1 0.29446 1 0.3075 1 0.77364 1 0.33222 1 0.94012 1 0.68028 1 0.29736 1 0.084357 1 0.15526 1 0.019121 1 9q loss 22 (14%) 140 0.20831 1 0.54034 1 0.38423 1 0.16889 1 0.89654 1 0.57236 1 0.90564 1 0.60933 1 0.044152 1 0.015004 1 0.16212 1 0.0072382 1 10p loss 32 (20%) 130 0.1433 1 0.13331 1 0.67352 1 0.048745 1 0.13616 1 0.15585 1 0.44192 1 0.32437 1 0.88384 1 0.39052 1 0.86045 1 0.2032 1 10q loss 37 (23%) 125 0.16328 1 0.58063 1 0.13483 1 0.070268 1 0.13005 1 0.023266 1 0.12839 1 0.11876 1 0.68241 1 0.55353 1 0.81776 1 0.21746 1 11p loss 24 (15%) 138 0.24333 1 0.37582 1 0.0094399 1 0.11694 1 0.19975 1 0.17831 1 0.60249 1 0.86095 1 0.97853 1 0.42782 1 0.49066 1 0.18571 1 11q loss 30 (19%) 132 0.05171 1 0.082304 1 0.0019221 1 0.025263 1 0.57592 1 0.28367 1 0.10419 1 0.10912 1 0.17476 1 0.1605 1 0.31046 1 0.16758 1 12p loss 22 (14%) 140 0.42479 1 0.52556 1 0.15292 1 0.34694 1 0.63986 1 0.13522 1 1 1 0.65089 1 0.37374 1 0.42224 1 0.23568 1 0.67735 1 12q loss 20 (12%) 142 0.28033 1 0.77815 1 0.090924 1 0.60136 1 0.61164 1 0.53413 1 0.80941 1 0.59481 1 0.48039 1 0.08011 1 0.26656 1 0.71237 1 13q loss 8 (5%) 154 0.51712 1 0.10429 1 0.31551 1 0.10047 1 0.055757 1 0.37347 1 1 1 1 1 0.10053 1 1 1 0.74274 1 0.59401 1 14q loss 65 (40%) 97 0.47058 1 0.44392 1 0.012875 1 0.75246 1 0.77556 1 0.34133 1 0.60985 1 0.85152 1 0.32671 1 0.22857 1 0.76804 1 0.97303 1 15q loss 72 (44%) 90 0.42237 1 0.022083 1 0.00173 1 0.93032 1 0.083424 1 0.13937 1 0.72019 1 0.62509 1 0.80169 1 1 1 0.95526 1 0.90657 1 16p loss 9 (6%) 153 0.37779 1 0.076202 1 0.10796 1 0.078907 1 0.65128 1 0.67827 1 1 1 0.57791 1 0.40932 1 0.77528 1 0.67546 1 0.64855 1 16q loss 14 (9%) 148 0.28033 1 0.31392 1 0.00044354 0.399 0.21715 1 0.643 1 0.60337 1 0.37559 1 0.58803 1 0.41302 1 0.3839 1 0.79043 1 0.53519 1 17p loss 104 (64%) 58 0.19365 1 0.48976 1 0.047785 1 0.29124 1 0.95378 1 0.39691 1 0.67523 1 0.73394 1 0.97197 1 0.29017 1 0.5238 1 0.61316 1 17q loss 25 (15%) 137 0.90375 1 0.46962 1 0.0034619 1 0.2694 1 0.70976 1 0.92397 1 0.54887 1 0.65119 1 0.90308 1 0.65994 1 0.39338 1 0.50032 1 18p loss 125 (77%) 37 0.050527 1 0.24873 1 5.2639e-06 0.0048 0.055123 1 0.55834 1 0.32957 1 0.30427 1 0.23632 1 0.17233 1 0.11974 1 0.1774 1 0.96292 1 18q loss 135 (83%) 27 0.020588 1 0.050584 1 1.2135e-05 0.011 0.023252 1 0.79886 1 0.66196 1 0.54029 1 0.44088 1 0.3839 1 0.15721 1 0.023283 1 0.55946 1 19p loss 22 (14%) 140 0.72868 1 0.84047 1 0.10275 1 0.077035 1 0.71304 1 0.99741 1 0.2991 1 0.21058 1 0.28544 1 0.005204 1 0.67458 1 0.36431 1 19q loss 21 (13%) 141 0.83204 1 0.20833 1 0.4702 1 0.077035 1 0.88391 1 0.91788 1 0.23044 1 0.11222 1 0.078702 1 0.0020239 1 0.75858 1 0.20286 1 20p loss 25 (15%) 137 1 1 1 1 0.095734 1 0.33195 1 0.21534 1 0.75877 1 0.19365 1 0.3984 1 0.15683 1 0.16776 1 0.029653 1 0.15787 1 21q loss 66 (41%) 96 0.26378 1 0.20403 1 0.026721 1 1 1 0.95438 1 0.61342 1 0.9196 1 0.93414 1 0.019554 1 0.40038 1 0.42428 1 0.48061 1 22q loss 57 (35%) 105 0.79432 1 0.25155 1 0.067646 1 0.63393 1 0.7385 1 0.56864 1 0.050817 1 0.35188 1 0.0074013 1 0.46717 1 0.37083 1 0.1938 1 xq loss 25 (15%) 137 1 1 0.91697 1 0.080015 1 0.46789 1 0.56165 1 0.97521 1 0.75898 1 0.73435 1 0.95037 1 0.81901 1 0.97211 1 0.72666 1