Clinical Features	CN_CNMF		METHLYATION_CNMF		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p	42 (33%)	85	0.0041585	1	0.0032609	0.887	0.010439	1	0.35566	1	0.29534	1	1	1	0.43448	1	0.3547	1
1q	43 (34%)	84	0.0050365	1	0.018219	1	0.039454	1	0.084963	1	0.33248	1	0.40051	1	0.35719	1	0.16556	1
2p	49 (39%)	78	0.0028062	0.772	0.00096364	0.282	0.0015092	0.433	0.018611	1	0.014199	1	0.084693	1	0.23063	1	0.014857	1
2q	38 (30%)	89	0.0086967	1	0.11362	1	0.77167	1	0.32075	1	0.30856	1	1	1	0.79627	1	0.3723	1
3p	37 (29%)	90	0.020527	1	0.16798	1	0.33772	1	0.14167	1	0.69108	1	0.1939	1	0.1355	1	0.10378	1
3q	41 (32%)	86	0.01803	1	0.017664	1	0.25817	1	0.024611	1	0.44598	1	0.054555	1	0.023356	1	0.052577	1
4p	46 (36%)	81	0.00022686	0.0699	0.0017901	0.512	0.072956	1	0.26923	1	0.3854	1	1	1	0.64241	1	1	1
4q	42 (33%)	85	0.0041585	1	0.0066372	1	0.2228	1	0.44122	1	0.30226	1	1	1	0.90967	1	1	1
5p	54 (43%)	73	0.0018959	0.54	0.041471	1	0.54901	1	0.57219	1	0.44016	1	0.61435	1	0.06035	1	0.60021	1
5q	49 (39%)	78	0.016961	1	0.04987	1	1	1	0.57393	1	0.39216	1	0.64163	1	0.10586	1	0.8322	1
6p	51 (40%)	76	0.35417	1	0.14459	1	1	1	1	1	0.66834	1	0.64436	1	0.71564	1	0.84123	1
6q	41 (32%)	86	0.048724	1	0.044343	1	0.95067	1	0.26968	1	0.79149	1	0.67102	1	0.41436	1	0.72788	1
7p	54 (43%)	73	0.0018959	0.54	0.054276	1	0.13102	1	0.24994	1	0.91727	1	1	1	0.80617	1	0.53099	1
7q	48 (38%)	79	0.0052545	1	0.70054	1	0.53419	1	0.26764	1	0.82576	1	0.86496	1	0.71564	1	0.58017	1
8p	53 (42%)	74	0.34622	1	0.25093	1	0.35317	1	0.54362	1	0.24277	1	0.25934	1	0.5015	1	0.8322	1
8q	49 (39%)	78	0.016961	1	0.63983	1	0.3664	1	0.84806	1	0.41101	1	0.88011	1	0.46495	1	0.48754	1
9p	63 (50%)	64	0.0031472	0.859	0.0012096	0.352	0.6022	1	0.0021766	0.614	0.00084881	0.25	0.14217	1	0.0068691	1	0.15064	1
9q	56 (44%)	71	0.006886	1	0.0028689	0.786	0.75802	1	0.0045671	1	0.0055615	1	0.11861	1	0.0022441	0.626	0.13994	1
10p	68 (54%)	59	1.2287e-05	0.00387	0.00077723	0.23	0.0022298	0.624	0.07288	1	0.034919	1	0.024568	1	0.19906	1	0.014713	1
10q	72 (57%)	55	1.0124e-06	0.000323	2.2738e-05	0.00709	8.4053e-06	0.00266	0.0002468	0.0755	0.0055707	1	0.0012354	0.357	0.0056501	1	0.00027596	0.0842
11p	53 (42%)	74	0.0046626	1	0.0066274	1	0.85215	1	0.12461	1	1	1	0.73094	1	0.67824	1	0.59368	1
11q	47 (37%)	80	0.0020336	0.576	0.01797	1	0.74714	1	0.11112	1	0.47859	1	0.32687	1	0.19757	1	0.25748	1
12p	43 (34%)	84	0.020053	1	0.088245	1	0.93548	1	0.13654	1	0.020115	1	0.50913	1	0.17874	1	0.56874	1
12q	36 (28%)	91	0.0048189	1	0.013147	1	0.68211	1	0.4023	1	0.73831	1	0.41806	1	0.59536	1	0.54337	1
13q	71 (56%)	56	4.4449e-05	0.0138	0.00036854	0.112	0.22042	1	0.05764	1	0.50834	1	0.56098	1	0.62152	1	0.51382	1
14q	61 (48%)	66	0.085904	1	0.049816	1	0.099578	1	0.15873	1	0.64827	1	1	1	0.55846	1	1	1
15q	52 (41%)	75	0.0035575	0.964	0.059647	1	0.66779	1	0.7541	1	0.38859	1	0.80627	1	0.83677	1	0.46682	1
16p	53 (42%)	74	0.000201	0.0621	0.00023278	0.0715	0.51516	1	0.17079	1	0.13886	1	0.80627	1	0.83774	1	0.46682	1
16q	70 (55%)	57	0.00043426	0.13	1.5005e-06	0.000477	0.0013587	0.391	0.0039497	1	0.0010458	0.305	0.0091702	1	0.025399	1	0.0027293	0.753
17p	51 (40%)	76	0.00041978	0.126	0.0024991	0.692	0.2228	1	0.35675	1	0.14997	1	1	1	0.1813	1	0.38972	1
17q	46 (36%)	81	7.2446e-06	0.0023	0.019666	1	0.13994	1	0.27838	1	0.021559	1	0.32738	1	0.43574	1	0.058193	1
18p	50 (39%)	77	0.00075928	0.226	0.00041043	0.124	0.27416	1	0.26392	1	0.50408	1	1	1	0.93725	1	0.5783	1
18q	50 (39%)	77	0.00053795	0.161	0.0012223	0.354	0.52198	1	0.19422	1	0.42589	1	0.79573	1	0.7931	1	0.83245	1
19p	45 (35%)	82	4.7463e-08	1.52e-05	0.0072611	1	0.31249	1	0.27215	1	0.47874	1	0.57345	1	0.83956	1	0.72479	1
19q	43 (34%)	84	1.9598e-05	0.00613	0.01499	1	0.69969	1	0.36668	1	0.52482	1	0.50913	1	0.79005	1	0.81069	1
20p	54 (43%)	73	0.018586	1	0.015715	1	0.18651	1	0.16768	1	0.66254	1	0.87768	1	0.66287	1	1	1
20q	50 (39%)	77	0.023394	1	0.0085699	1	0.60925	1	0.06646	1	0.30489	1	0.62843	1	0.1075	1	0.30999	1
21q	55 (43%)	72	0.00061526	0.183	1.5548e-05	0.00488	0.076511	1	0.024274	1	0.24537	1	0.49257	1	0.086304	1	0.36395	1
22q	68 (54%)	59	0.00040702	0.123	0.0022095	0.621	0.24022	1	0.10062	1	0.080964	1	0.50681	1	0.637	1	0.36395	1
xq	63 (50%)	64	0.0023781	0.661	0.0001484	0.046	0.10292	1	0.00093264	0.274	0.48907	1	0.3972	1	0.18682	1	0.087479	1