Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	65 (22%)	227	0.32007	1	1	1	0.82748	1	0.3475	1	0.15676	1	0.21344	1	0.87887	1	0.86669	1	0.79634	1	0.71602	1
1q gain	130 (45%)	162	5.6161e-07	0.00044	0.17226	1	0.22551	1	0.94976	1	0.021499	1	0.092727	1	0.12022	1	0.16676	1	0.025087	1	0.039388	1
2p gain	57 (20%)	235	0.020554	1	0.64697	1	0.46061	1	0.50273	1	0.033098	1	0.0030467	1	0.01737	1	0.0032854	1	0.012258	1	0.0007274	0.551
2q gain	55 (19%)	237	0.0061976	1	0.93093	1	0.80856	1	0.18484	1	0.0025574	1	0.0014848	1	0.0016274	1	0.0003835	0.292	0.0028903	1	5.1683e-05	0.0398
3p gain	47 (16%)	245	0.85966	1	0.27011	1	0.036953	1	0.0058795	1	0.36258	1	0.54153	1	0.87964	1	0.030961	1	0.4441	1	0.23745	1
3q gain	57 (20%)	235	0.32739	1	0.63933	1	0.02448	1	0.012154	1	0.034289	1	0.16465	1	0.70465	1	0.025478	1	0.40028	1	0.67589	1
4p gain	44 (15%)	248	0.0017894	1	0.11328	1	0.20508	1	0.41341	1	0.71782	1	0.15915	1	0.22639	1	0.029272	1	0.15681	1	0.18798	1
4q gain	37 (13%)	255	0.00062888	0.477	0.039721	1	0.24211	1	0.8103	1	0.63888	1	0.10909	1	0.29892	1	0.11759	1	0.36283	1	0.3581	1
5p gain	57 (20%)	235	2.1586e-05	0.0167	0.29734	1	0.9195	1	0.54975	1	0.37855	1	0.78123	1	0.031219	1	0.27682	1	0.055171	1	0.24396	1
5q gain	35 (12%)	257	0.0090801	1	0.28209	1	0.47277	1	0.14668	1	0.94126	1	0.50358	1	0.013855	1	0.29866	1	0.028652	1	0.038086	1
6p gain	117 (40%)	175	2.6298e-09	2.07e-06	0.00104	0.781	0.86631	1	0.055733	1	0.31634	1	0.018215	1	0.017829	1	0.00036742	0.28	0.031303	1	0.00012622	0.0969
6q gain	38 (13%)	254	0.051753	1	0.22861	1	0.75098	1	0.31205	1	0.59203	1	0.77051	1	0.24164	1	0.19278	1	0.36617	1	0.074412	1
7p gain	157 (54%)	135	4.7321e-06	0.00368	0.69404	1	0.48179	1	0.97507	1	0.027226	1	0.33276	1	0.7114	1	0.1748	1	0.85394	1	0.5601	1
7q gain	155 (53%)	137	3.2239e-07	0.000253	0.51004	1	0.73464	1	0.97297	1	0.0059072	1	0.10023	1	0.52655	1	0.044785	1	0.43096	1	0.35125	1
8p gain	93 (32%)	199	0.00019386	0.148	0.21325	1	0.796	1	0.69481	1	0.025874	1	0.099168	1	0.15511	1	0.64277	1	0.046985	1	0.45854	1
8q gain	134 (46%)	158	1.3452e-06	0.00105	0.003844	1	0.47801	1	0.62438	1	0.0031773	1	0.089245	1	0.11666	1	0.17667	1	0.06503	1	0.14782	1
9p gain	15 (5%)	277	0.34329	1	0.21839	1	0.34702	1	0.5514	1	0.44988	1	0.83932	1	1	1	0.72103	1	0.80063	1	0.47844	1
9q gain	20 (7%)	272	0.50553	1	0.83191	1	0.11298	1	0.35763	1	0.51665	1	0.59191	1	0.8704	1	0.7659	1	0.84584	1	0.7005	1
10p gain	9 (3%)	283	0.63751	1	0.69282	1	0.58453	1	0.30592	1	1	1	0.68927	1	0.43499	1	0.061792	1	0.60444	1	0.38337	1
11p gain	29 (10%)	263	0.032811	1	0.48516	1	0.082168	1	0.032781	1	0.011349	1	0.10029	1	0.15267	1	0.043475	1	0.11062	1	0.18102	1
11q gain	25 (9%)	267	0.0063061	1	0.33623	1	0.075994	1	0.023795	1	0.015115	1	0.28876	1	0.12688	1	0.010496	1	0.10709	1	0.07565	1
12p gain	48 (16%)	244	0.0030107	1	0.40829	1	0.58798	1	0.1272	1	0.020061	1	0.03104	1	0.83864	1	0.67896	1	0.81323	1	0.9744	1
12q gain	30 (10%)	262	0.16224	1	0.88684	1	0.59615	1	0.075755	1	0.34073	1	0.32836	1	0.7916	1	0.8156	1	0.484	1	0.78881	1
13q gain	73 (25%)	219	0.00030427	0.232	1.1194e-06	0.000875	0.41838	1	0.70071	1	0.026572	1	0.024838	1	0.73019	1	0.33294	1	0.82014	1	0.4889	1
14q gain	31 (11%)	261	0.7748	1	0.32261	1	0.34529	1	0.018125	1	0.96126	1	0.94199	1	0.19983	1	0.16102	1	0.67599	1	0.94658	1
15q gain	65 (22%)	227	3.0329e-06	0.00237	0.74446	1	0.79092	1	0.60336	1	0.088461	1	0.22936	1	0.27316	1	0.044797	1	0.46326	1	0.32068	1
16p gain	40 (14%)	252	0.010789	1	0.0080184	1	1	1	0.86077	1	0.00045451	0.345	0.017942	1	0.033372	1	0.0018234	1	0.047373	1	0.075526	1
16q gain	34 (12%)	258	0.0037554	1	0.027045	1	0.28237	1	0.65115	1	5.4208e-05	0.0417	0.0053616	1	0.053858	1	0.00066845	0.507	0.10411	1	0.065724	1
17p gain	33 (11%)	259	0.0024715	1	0.011361	1	0.60044	1	0.23694	1	0.23558	1	0.31808	1	0.41482	1	0.2831	1	0.41107	1	0.17697	1
17q gain	58 (20%)	234	0.15263	1	0.11423	1	0.049718	1	0.016008	1	0.58577	1	0.21321	1	0.37483	1	0.68734	1	0.065312	1	0.0040112	1
18p gain	47 (16%)	245	0.028637	1	0.63083	1	0.48165	1	0.33668	1	0.14169	1	0.61462	1	0.76311	1	0.66659	1	0.32201	1	0.62146	1
18q gain	38 (13%)	254	0.020937	1	0.74365	1	0.3513	1	0.84124	1	0.56313	1	0.83928	1	0.93171	1	0.85513	1	0.29819	1	0.89443	1
19p gain	42 (14%)	250	0.044518	1	0.11329	1	0.23307	1	0.5926	1	0.0061536	1	0.0044964	1	0.95904	1	0.50056	1	0.91343	1	0.72163	1
19q gain	44 (15%)	248	0.026382	1	0.026222	1	0.282	1	1	1	0.00084051	0.635	0.00091671	0.69	0.48573	1	0.39382	1	0.52608	1	0.75515	1
20p gain	122 (42%)	170	0.00014994	0.115	0.022714	1	0.74227	1	0.92387	1	0.00090858	0.685	0.010613	1	0.09033	1	0.0014773	1	0.055806	1	0.3367	1
20q gain	145 (50%)	147	6.6573e-05	0.0512	0.04153	1	0.81916	1	0.85808	1	0.0083911	1	0.16988	1	0.59092	1	0.010507	1	0.10841	1	0.4528	1
21q gain	50 (17%)	242	0.48995	1	0.15374	1	0.86907	1	0.74657	1	0.44708	1	0.73644	1	0.31886	1	0.31218	1	0.4822	1	0.86093	1
22q gain	105 (36%)	187	0.010222	1	0.33488	1	0.946	1	0.94368	1	0.12835	1	0.21391	1	0.29246	1	0.41147	1	0.5101	1	0.95528	1
xq gain	30 (10%)	262	0.035787	1	0.023895	1	0.46838	1	0.9083	1	0.052414	1	0.13128	1	0.49942	1	0.37513	1	0.81593	1	0.6029	1
1p loss	37 (13%)	255	0.091637	1	0.026676	1	0.56221	1	0.0317	1	0.051742	1	0.23804	1	0.14205	1	0.074949	1	0.13846	1	0.52548	1
1q loss	20 (7%)	272	0.0064437	1	0.17978	1	0.96943	1	0.3514	1	0.11125	1	0.46656	1	0.11411	1	0.26158	1	0.24453	1	0.38986	1
2p loss	37 (13%)	255	0.047388	1	0.28465	1	0.039117	1	0.0020095	1	0.45035	1	0.1263	1	0.0032433	1	0.0051941	1	0.0079919	1	0.041473	1
2q loss	37 (13%)	255	0.10166	1	0.065693	1	0.010333	1	0.0011024	0.827	0.17838	1	0.087951	1	0.00099529	0.748	0.0044487	1	0.009834	1	0.030181	1
3p loss	46 (16%)	246	0.8889	1	0.5719	1	0.43614	1	0.65849	1	0.11934	1	0.10617	1	0.25864	1	0.32959	1	0.077436	1	0.028042	1
3q loss	35 (12%)	257	0.68059	1	0.21012	1	0.33453	1	0.65287	1	0.47698	1	0.54435	1	0.60137	1	0.42103	1	0.34614	1	0.1875	1
4p loss	62 (21%)	230	0.72064	1	0.37168	1	0.37754	1	0.69182	1	0.47001	1	0.11869	1	0.17464	1	0.034612	1	0.092818	1	0.15261	1
4q loss	64 (22%)	228	0.45629	1	0.137	1	0.48899	1	0.44656	1	0.09459	1	0.0076084	1	0.017503	1	0.0047485	1	0.019282	1	0.018136	1
5p loss	66 (23%)	226	0.63093	1	0.36956	1	0.84717	1	0.91326	1	0.78267	1	0.97785	1	0.63586	1	0.61192	1	0.76939	1	0.88137	1
5q loss	83 (28%)	209	0.93396	1	0.069959	1	0.48259	1	0.65495	1	0.87088	1	0.54091	1	0.87327	1	0.5034	1	0.73411	1	0.50514	1
6p loss	56 (19%)	236	0.0075884	1	0.55862	1	0.91341	1	0.53103	1	0.011523	1	0.0035535	1	0.121	1	0.18774	1	0.039331	1	0.032251	1
6q loss	145 (50%)	147	0.00022758	0.174	0.095423	1	0.92745	1	0.45034	1	0.0053516	1	0.039138	1	0.39803	1	0.67847	1	0.70894	1	0.31935	1
7p loss	14 (5%)	278	1	1	0.060719	1	0.090702	1	0.10435	1	0.52653	1	0.69052	1	0.36898	1	0.382	1	0.46146	1	0.66493	1
7q loss	14 (5%)	278	0.3024	1	0.0047058	1	0.28405	1	0.89207	1	0.16951	1	0.28267	1	0.32143	1	0.56401	1	0.33794	1	0.73756	1
8p loss	53 (18%)	239	0.20123	1	0.69741	1	0.079967	1	0.20884	1	0.32226	1	0.96795	1	0.41088	1	0.22227	1	0.23482	1	0.69639	1
8q loss	21 (7%)	271	0.88006	1	0.095277	1	0.29672	1	0.13049	1	0.5304	1	0.73194	1	0.4555	1	0.70484	1	0.25952	1	0.059115	1
9p loss	193 (66%)	99	5.0074e-07	0.000393	0.041798	1	0.46311	1	0.74829	1	0.019989	1	0.04829	1	0.5768	1	0.078197	1	0.79543	1	0.56666	1
9q loss	150 (51%)	142	0.16309	1	0.067195	1	0.90524	1	0.094152	1	0.089366	1	0.57532	1	0.50428	1	0.57131	1	0.65218	1	0.49447	1
10p loss	164 (56%)	128	3.1538e-08	2.48e-05	0.041773	1	0.84051	1	0.3672	1	4.4295e-05	0.0342	0.00075209	0.569	0.47437	1	0.028624	1	0.47488	1	0.3158	1
10q loss	181 (62%)	111	1.7646e-09	1.39e-06	0.068253	1	0.89528	1	0.1278	1	3.0396e-06	0.00237	1.6227e-05	0.0126	0.82678	1	0.1297	1	0.67005	1	0.59366	1
11p loss	102 (35%)	190	0.029141	1	0.066295	1	0.48455	1	0.2166	1	0.14903	1	0.34274	1	0.71854	1	0.14906	1	0.36205	1	0.41371	1
11q loss	116 (40%)	176	0.00024816	0.19	0.23681	1	0.96616	1	0.55848	1	0.10838	1	0.55095	1	0.97852	1	0.21741	1	0.81346	1	0.36005	1
12p loss	45 (15%)	247	0.25634	1	0.063576	1	0.72537	1	0.42228	1	0.083151	1	0.65928	1	0.91209	1	0.67788	1	0.51858	1	0.63089	1
12q loss	51 (17%)	241	0.14159	1	0.041412	1	0.83965	1	0.52584	1	0.089687	1	0.40259	1	0.71809	1	0.42902	1	0.9043	1	0.81275	1
13q loss	63 (22%)	229	0.10471	1	0.0051187	1	0.079384	1	0.6856	1	0.58889	1	0.032387	1	0.71925	1	0.38043	1	0.95731	1	0.28834	1
14q loss	92 (32%)	200	8.4417e-06	0.00654	0.75283	1	0.37683	1	0.73678	1	0.0051136	1	0.13621	1	0.4963	1	0.97393	1	0.22461	1	0.63402	1
15q loss	42 (14%)	250	5.143e-06	0.00399	0.18821	1	0.11295	1	0.11453	1	0.46055	1	0.10951	1	0.8278	1	0.32012	1	0.72102	1	0.12597	1
16p loss	58 (20%)	234	0.41597	1	0.1558	1	0.035047	1	0.31145	1	0.018139	1	0.78965	1	0.13613	1	0.21399	1	0.19758	1	0.30661	1
16q loss	86 (29%)	206	0.66272	1	0.38578	1	0.006973	1	0.41456	1	0.0070421	1	0.1471	1	0.074892	1	0.044111	1	0.14729	1	0.058307	1
17p loss	98 (34%)	194	0.67305	1	0.33456	1	0.75157	1	0.30211	1	0.2305	1	0.3045	1	0.87025	1	0.42173	1	0.42286	1	0.60936	1
17q loss	47 (16%)	245	0.14251	1	0.86426	1	0.22661	1	0.43197	1	0.9324	1	0.74376	1	0.3784	1	0.73274	1	0.75334	1	0.69674	1
18p loss	84 (29%)	208	0.2301	1	0.65133	1	0.46205	1	0.84257	1	0.011112	1	0.24103	1	0.97787	1	0.48918	1	0.52878	1	0.69336	1
18q loss	79 (27%)	213	0.5832	1	0.73496	1	0.48439	1	0.77949	1	0.49133	1	0.67451	1	0.73482	1	0.27023	1	0.9122	1	0.67386	1
19p loss	61 (21%)	231	0.036151	1	0.21231	1	0.78213	1	0.038455	1	0.061119	1	0.53564	1	0.36766	1	0.68734	1	0.14428	1	0.41979	1
19q loss	58 (20%)	234	0.075318	1	0.078255	1	0.93811	1	0.025634	1	0.095023	1	0.6482	1	0.59269	1	0.68507	1	0.39131	1	0.37101	1
20p loss	18 (6%)	274	0.4676	1	0.85172	1	0.27372	1	0.21995	1	0.8953	1	0.69878	1	0.12462	1	0.26762	1	0.14706	1	0.20358	1
20q loss	7 (2%)	285	0.29997	1	0.43721	1	NA	NA	NA	NA	0.73927	1	0.080801	1	0.5281	1	0.89773	1	0.27675	1	0.18133	1
21q loss	58 (20%)	234	0.53569	1	0.3885	1	0.42033	1	0.59938	1	0.50274	1	0.25298	1	0.13402	1	0.081955	1	0.042226	1	0.3051	1
22q loss	31 (11%)	261	0.49625	1	0.32261	1	0.97832	1	1	1	0.72636	1	0.86465	1	0.21232	1	0.95459	1	0.94214	1	0.88029	1
xq loss	73 (25%)	219	0.0018446	1	4.7742e-06	0.00371	0.19791	1	0.046712	1	0.0065779	1	0.010159	1	0.01574	1	0.56976	1	0.17574	1	0.88696	1