Correlation between gene mutation status and molecular subtypes
Skin Cutaneous Melanoma (Metastatic)
15 January 2014  |  analyses__2014_01_15
Maintainer Information
Citation Information
doi:10.7908/C13N21WC
Maintained by TCGA GDAC Team (Broad Institute/MD Anderson Cancer Center/Harvard Medical School)
Cite as Broad Institute TCGA Genome Data Analysis Center (2014): Correlation between gene mutation status and molecular subtypes. Broad Institute of MIT and Harvard. doi:10.7908/C13N21WC
Overview
Introduction

This pipeline computes the correlation between significantly recurrent gene mutations and molecular subtypes.

Summary

Testing the association between mutation status of 169 genes and 10 molecular subtypes across 279 patients, 3 significant findings detected with P value < 0.05 and Q value < 0.25.

  • NRAS mutation correlated to 'CN_CNMF'.

  • BRAF mutation correlated to 'CN_CNMF' and 'MRNASEQ_CHIERARCHICAL'.

Results
Overview of the results

Table 1.  Get Full Table Overview of the association between mutation status of 169 genes and 10 molecular subtypes. Shown in the table are P values (Q values). Thresholded by P value < 0.05 and Q value < 0.25, 3 significant findings detected.

Clinical
Features 		CN
CNMF 		METHLYATION
CNMF 		RPPA
CNMF 		RPPA
CHIERARCHICAL 		MRNASEQ
CNMF 		MRNASEQ
CHIERARCHICAL 		MIRSEQ
CNMF 		MIRSEQ
CHIERARCHICAL 		MIRSEQ
MATURE
CNMF 		MIRSEQ
MATURE
CHIERARCHICAL
nMutated (%) nWild-Type Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test Fisher's exact test
BRAF 140 (50%) 139 4.38e-09
(7.39e-06) 		0.0177
(1.00) 		0.605
(1.00) 		0.255
(1.00) 		0.000638
(1.00) 		4.14e-08
(6.99e-05) 		0.179
(1.00) 		0.00773
(1.00) 		0.102
(1.00) 		0.0574
(1.00)
NRAS 86 (31%) 193 8.28e-05
(0.14) 		0.0139
(1.00) 		0.671
(1.00) 		0.00542
(1.00) 		0.559
(1.00) 		0.138
(1.00) 		0.934
(1.00) 		0.199
(1.00) 		0.424
(1.00) 		0.282
(1.00)
C15ORF23 19 (7%) 260 0.563
(1.00) 		0.0639
(1.00) 		0.699
(1.00) 		0.844
(1.00) 		0.683
(1.00) 		0.426
(1.00) 		0.823
(1.00) 		0.527
(1.00) 		0.857
(1.00) 		0.834
(1.00)
ANKRD20A4 6 (2%) 273 0.587
(1.00) 		0.397
(1.00) 		0.829
(1.00) 		1
(1.00) 		0.0651
(1.00) 		0.18
(1.00) 		1
(1.00) 		1
(1.00) 		0.774
(1.00) 		0.581
(1.00)
CDKN2A 41 (15%) 238 0.0271
(1.00) 		0.0374
(1.00) 		0.19
(1.00) 		0.295
(1.00) 		0.899
(1.00) 		0.761
(1.00) 		0.733
(1.00) 		1
(1.00) 		0.705
(1.00) 		0.842
(1.00)
OXA1L 8 (3%) 271 0.156
(1.00) 		0.228
(1.00) 		1
(1.00) 		0.259
(1.00) 		0.487
(1.00) 		0.215
(1.00) 		0.433
(1.00) 		0.641
(1.00) 		0.546
(1.00) 		0.204
(1.00)
TP53 47 (17%) 232 0.112
(1.00) 		0.017
(1.00) 		0.235
(1.00) 		0.32
(1.00) 		0.13
(1.00) 		0.228
(1.00) 		0.872
(1.00) 		0.857
(1.00) 		0.69
(1.00) 		0.464
(1.00)
STK19 13 (5%) 266 0.679
(1.00) 		0.0647
(1.00) 		0.155
(1.00) 		0.388
(1.00) 		0.637
(1.00) 		0.716
(1.00) 		0.602
(1.00) 		0.44
(1.00) 		0.343
(1.00) 		0.385
(1.00)
TMEM216 8 (3%) 271 0.0964
(1.00) 		0.388
(1.00) 		0.0682
(1.00) 		0.489
(1.00) 		0.739
(1.00) 		0.812
(1.00) 		0.733
(1.00) 		0.514
(1.00) 		0.665
(1.00) 		0.716
(1.00)
PCDHAC2 156 (56%) 123 0.854
(1.00) 		0.0285
(1.00) 		0.501
(1.00) 		0.627
(1.00) 		0.705
(1.00) 		0.354
(1.00) 		0.882
(1.00) 		0.875
(1.00) 		0.438
(1.00) 		0.283
(1.00)
PTEN 23 (8%) 256 0.322
(1.00) 		0.0614
(1.00) 		0.0868
(1.00) 		0.108
(1.00) 		0.292
(1.00) 		0.0465
(1.00) 		0.822
(1.00) 		0.0521
(1.00) 		0.459
(1.00) 		0.391
(1.00)
MRPS31 19 (7%) 260 0.841
(1.00) 		0.02
(1.00) 		0.964
(1.00) 		0.831
(1.00) 		0.0669
(1.00) 		0.4
(1.00) 		0.228
(1.00) 		0.572
(1.00) 		0.11
(1.00) 		0.383
(1.00)
PCDHGC5 141 (51%) 138 0.822
(1.00) 		0.0264
(1.00) 		0.958
(1.00) 		0.711
(1.00) 		0.102
(1.00) 		0.383
(1.00) 		0.264
(1.00) 		0.0661
(1.00) 		0.198
(1.00) 		0.305
(1.00)
BAGE 8 (3%) 271 0.156
(1.00) 		0.473
(1.00) 		0.713
(1.00) 		0.737
(1.00) 		0.396
(1.00) 		0.381
(1.00) 		0.538
(1.00) 		0.847
(1.00) 		0.906
(1.00) 		0.63
(1.00)
DSG1 45 (16%) 234 0.76
(1.00) 		0.389
(1.00) 		0.12
(1.00) 		0.74
(1.00) 		0.517
(1.00) 		0.655
(1.00) 		0.939
(1.00) 		0.605
(1.00) 		0.704
(1.00) 		0.453
(1.00)
RAC1 20 (7%) 259 0.0473
(1.00) 		0.341
(1.00) 		0.744
(1.00) 		0.351
(1.00) 		0.642
(1.00) 		1
(1.00) 		0.122
(1.00) 		0.349
(1.00) 		0.087
(1.00) 		0.308
(1.00)
PPP6C 20 (7%) 259 0.641
(1.00) 		0.363
(1.00) 		0.551
(1.00) 		0.253
(1.00) 		0.707
(1.00) 		0.578
(1.00) 		0.529
(1.00) 		0.285
(1.00) 		0.437
(1.00) 		0.689
(1.00)
SERPINB3 42 (15%) 237 0.507
(1.00) 		0.969
(1.00) 		0.117
(1.00) 		0.284
(1.00) 		0.756
(1.00) 		0.399
(1.00) 		0.604
(1.00) 		0.729
(1.00) 		0.77
(1.00) 		0.974
(1.00)
TSHB 5 (2%) 274 0.161
(1.00) 		0.449
(1.00) 		0.456
(1.00) 		0.785
(1.00) 		0.273
(1.00) 		0.331
(1.00) 		1
(1.00) 		0.899
(1.00) 		0.863
(1.00) 		1
(1.00)
NDUFB9 8 (3%) 271 0.824
(1.00) 		0.283
(1.00) 		0.1
(1.00) 		0.446
(1.00) 		0.0322
(1.00) 		0.0714
(1.00) 		0.273
(1.00) 		0.54
(1.00) 		0.223
(1.00) 		0.437
(1.00)
MS4A2 13 (5%) 266 0.0476
(1.00) 		0.721
(1.00) 		1
(1.00) 		1
(1.00) 		0.77
(1.00) 		0.514
(1.00) 		0.718
(1.00) 		0.571
(1.00) 		1
(1.00) 		0.824
(1.00)
RPS27 24 (9%) 255 0.338
(1.00) 		1
(1.00) 		1
(1.00) 		0.838
(1.00) 		0.841
(1.00) 		0.783
(1.00) 		0.758
(1.00) 		0.908
(1.00) 		0.707
(1.00) 		0.529
(1.00)
PPIAL4G 15 (5%) 264 0.202
(1.00) 		0.764
(1.00) 		1
(1.00) 		0.754
(1.00) 		0.352
(1.00) 		0.119
(1.00) 		0.942
(1.00) 		0.339
(1.00) 		0.227
(1.00) 		0.449
(1.00)
LUZP2 27 (10%) 252 0.915
(1.00) 		0.0953
(1.00) 		0.935
(1.00) 		0.199
(1.00) 		0.122
(1.00) 		0.665
(1.00) 		0.183
(1.00) 		0.108
(1.00) 		0.274
(1.00) 		0.751
(1.00)
FAM113B 28 (10%) 251 0.681
(1.00) 		0.465
(1.00) 		0.111
(1.00) 		0.345
(1.00) 		0.59
(1.00) 		0.184
(1.00) 		0.155
(1.00) 		0.0992
(1.00) 		0.138
(1.00) 		0.0937
(1.00)
IDH1 16 (6%) 263 0.695
(1.00) 		0.219
(1.00) 		0.12
(1.00) 		0.0971
(1.00) 		0.165
(1.00) 		0.336
(1.00) 		0.162
(1.00) 		0.168
(1.00) 		0.209
(1.00) 		0.207
(1.00)
OR51S1 30 (11%) 249 0.331
(1.00) 		0.783
(1.00) 		0.517
(1.00) 		0.158
(1.00) 		0.74
(1.00) 		0.788
(1.00) 		0.655
(1.00) 		0.312
(1.00) 		0.266
(1.00) 		0.0358
(1.00)
CYP4X1 21 (8%) 258 0.313
(1.00) 		0.461
(1.00) 		0.943
(1.00) 		0.315
(1.00) 		0.208
(1.00) 		0.908
(1.00) 		0.681
(1.00) 		0.405
(1.00) 		0.379
(1.00) 		0.596
(1.00)
ARMC4 54 (19%) 225 0.273
(1.00) 		0.5
(1.00) 		0.0932
(1.00) 		0.4
(1.00) 		0.116
(1.00) 		0.219
(1.00) 		0.757
(1.00) 		0.285
(1.00) 		0.233
(1.00) 		0.229
(1.00)
TUBAL3 10 (4%) 269 0.084
(1.00) 		0.395
(1.00) 		0.501
(1.00) 		0.274
(1.00) 		0.719
(1.00) 		0.711
(1.00) 		0.711
(1.00) 		0.327
(1.00) 		0.851
(1.00) 		0.869
(1.00)
NMNAT3 11 (4%) 268 0.436
(1.00) 		0.181
(1.00) 		0.844
(1.00) 		1
(1.00) 		0.315
(1.00) 		0.679
(1.00) 		0.859
(1.00) 		0.219
(1.00) 		0.862
(1.00) 		0.201
(1.00)
AOAH 27 (10%) 252 0.413
(1.00) 		0.451
(1.00) 		0.363
(1.00) 		0.671
(1.00) 		0.387
(1.00) 		0.181
(1.00) 		0.974
(1.00) 		0.31
(1.00) 		0.24
(1.00) 		0.237
(1.00)
THEMIS 34 (12%) 245 0.413
(1.00) 		0.0464
(1.00) 		0.506
(1.00) 		0.853
(1.00) 		0.658
(1.00) 		0.408
(1.00) 		0.439
(1.00) 		0.241
(1.00) 		0.689
(1.00) 		0.107
(1.00)
CYP4Z1 27 (10%) 252 0.503
(1.00) 		0.148
(1.00) 		0.025
(1.00) 		0.353
(1.00) 		0.645
(1.00) 		0.341
(1.00) 		0.629
(1.00) 		0.868
(1.00) 		0.52
(1.00) 		0.58
(1.00)
CTAGE6P 7 (3%) 272 0.896
(1.00) 		0.896
(1.00) 		0.0144
(1.00) 		0.0568
(1.00) 		0.302
(1.00) 		0.425
(1.00) 		0.876
(1.00) 		0.22
(1.00) 		1
(1.00) 		0.364
(1.00)
TC2N 20 (7%) 259 0.888
(1.00) 		0.34
(1.00) 		0.614
(1.00) 		0.309
(1.00) 		0.706
(1.00) 		0.851
(1.00) 		0.45
(1.00) 		0.815
(1.00) 		0.281
(1.00) 		0.845
(1.00)
MPP7 30 (11%) 249 0.356
(1.00) 		0.225
(1.00) 		0.28
(1.00) 		0.349
(1.00) 		0.359
(1.00) 		0.43
(1.00) 		0.66
(1.00) 		0.518
(1.00) 		0.697
(1.00) 		0.708
(1.00)
C1QTNF9 16 (6%) 263 0.324
(1.00) 		0.431
(1.00) 		0.633
(1.00) 		0.773
(1.00) 		0.877
(1.00) 		0.805
(1.00) 		0.185
(1.00) 		0.341
(1.00) 		0.576
(1.00) 		0.106
(1.00)
CAPZA3 26 (9%) 253 0.719
(1.00) 		0.26
(1.00) 		0.722
(1.00) 		0.698
(1.00) 		0.901
(1.00) 		0.3
(1.00) 		0.886
(1.00) 		0.899
(1.00) 		0.633
(1.00) 		0.601
(1.00)
ITGA4 36 (13%) 243 0.32
(1.00) 		0.0132
(1.00) 		0.695
(1.00) 		0.946
(1.00) 		0.182
(1.00) 		0.476
(1.00) 		0.343
(1.00) 		0.0776
(1.00) 		0.419
(1.00) 		0.666
(1.00)
ZNF99 38 (14%) 241 0.0707
(1.00) 		0.817
(1.00) 		0.74
(1.00) 		0.363
(1.00) 		0.491
(1.00) 		0.241
(1.00) 		0.45
(1.00) 		0.642
(1.00) 		0.562
(1.00) 		0.0565
(1.00)
GPR141 16 (6%) 263 0.695
(1.00) 		0.597
(1.00) 		0.0362
(1.00) 		0.114
(1.00) 		0.638
(1.00) 		0.897
(1.00) 		0.304
(1.00) 		0.546
(1.00) 		0.0876
(1.00) 		0.939
(1.00)
PROL1 23 (8%) 256 0.0199
(1.00) 		0.407
(1.00) 		0.662
(1.00) 		0.345
(1.00) 		0.654
(1.00) 		0.438
(1.00) 		0.141
(1.00) 		0.202
(1.00) 		0.455
(1.00) 		0.625
(1.00)
EMG1 9 (3%) 270 0.637
(1.00) 		0.913
(1.00) 		0.586
(1.00) 		0.178
(1.00) 		0.835
(1.00) 		0.284
(1.00) 		0.389
(1.00) 		1
(1.00) 		1
(1.00) 		0.443
(1.00)
RQCD1 9 (3%) 270 0.0623
(1.00) 		0.199
(1.00) 		0.0901
(1.00) 		1
(1.00) 		0.692
(1.00) 		1
(1.00) 		0.627
(1.00) 		0.585
(1.00) 		0.48
(1.00) 		0.888
(1.00)
TMPRSS11B 22 (8%) 257 0.18
(1.00) 		0.257
(1.00) 		0.109
(1.00) 		0.836
(1.00) 		0.683
(1.00) 		0.129
(1.00) 		0.272
(1.00) 		0.293
(1.00) 		0.367
(1.00) 		0.0742
(1.00)
OR4E2 24 (9%) 255 0.148
(1.00) 		0.892
(1.00) 		0.829
(1.00) 		0.757
(1.00) 		0.383
(1.00) 		0.332
(1.00) 		0.72
(1.00) 		0.933
(1.00) 		0.571
(1.00) 		0.135
(1.00)
TCHHL1 39 (14%) 240 0.0272
(1.00) 		0.308
(1.00) 		0.0557
(1.00) 		0.2
(1.00) 		0.185
(1.00) 		0.298
(1.00) 		0.641
(1.00) 		0.269
(1.00) 		0.806
(1.00) 		0.682
(1.00)
LOC649330 28 (10%) 251 0.214
(1.00) 		0.65
(1.00) 		0.76
(1.00) 		0.565
(1.00) 		0.104
(1.00) 		0.0793
(1.00) 		0.945
(1.00) 		0.764
(1.00) 		0.865
(1.00) 		0.655
(1.00)
PCSK1 26 (9%) 253 0.719
(1.00) 		0.319
(1.00) 		0.141
(1.00) 		0.455
(1.00) 		0.848
(1.00) 		0.595
(1.00) 		0.758
(1.00) 		0.523
(1.00) 		0.857
(1.00) 		0.139
(1.00)
ELF5 9 (3%) 270 1
(1.00) 		0.388
(1.00) 		0.713
(1.00) 		0.371
(1.00) 		0.394
(1.00) 		0.519
(1.00) 		0.229
(1.00) 		0.203
(1.00) 		0.159
(1.00) 		0.139
(1.00)
OGDHL 33 (12%) 246 0.229
(1.00) 		0.0645
(1.00) 		0.933
(1.00) 		0.813
(1.00) 		0.467
(1.00) 		0.767
(1.00) 		0.0638
(1.00) 		0.55
(1.00) 		0.0496
(1.00) 		0.189
(1.00)
PCDP1 18 (6%) 261 0.468
(1.00) 		0.172
(1.00) 		0.479
(1.00) 		0.231
(1.00) 		0.284
(1.00) 		0.334
(1.00) 		0.472
(1.00) 		0.519
(1.00) 		0.709
(1.00) 		0.116
(1.00)
FUT9 29 (10%) 250 0.463
(1.00) 		0.0318
(1.00) 		0.314
(1.00) 		0.441
(1.00) 		0.341
(1.00) 		0.304
(1.00) 		0.219
(1.00) 		0.125
(1.00) 		0.255
(1.00) 		0.262
(1.00)
GCOM1 24 (9%) 255 1
(1.00) 		0.328
(1.00) 		0.48
(1.00) 		0.505
(1.00) 		0.0234
(1.00) 		0.118
(1.00) 		0.559
(1.00) 		0.221
(1.00) 		0.375
(1.00) 		0.215
(1.00)
SIRPB1 22 (8%) 257 0.925
(1.00) 		0.824
(1.00) 		0.163
(1.00) 		0.28
(1.00) 		0.346
(1.00) 		0.174
(1.00) 		0.348
(1.00) 		0.183
(1.00) 		0.778
(1.00) 		0.0779
(1.00)
PENK 23 (8%) 256 0.379
(1.00) 		0.0815
(1.00) 		0.346
(1.00) 		0.813
(1.00) 		0.137
(1.00) 		0.438
(1.00) 		0.596
(1.00) 		0.804
(1.00) 		0.231
(1.00) 		0.415
(1.00)
CHGB 29 (10%) 250 0.676
(1.00) 		0.288
(1.00) 		0.066
(1.00) 		0.00639
(1.00) 		0.21
(1.00) 		0.094
(1.00) 		0.324
(1.00) 		0.83
(1.00) 		0.424
(1.00) 		1
(1.00)
C8ORF34 29 (10%) 250 0.75
(1.00) 		0.364
(1.00) 		0.348
(1.00) 		0.646
(1.00) 		0.0995
(1.00) 		0.0918
(1.00) 		0.0919
(1.00) 		0.296
(1.00) 		0.0989
(1.00) 		0.251
(1.00)
GALNTL5 15 (5%) 264 0.0887
(1.00) 		0.25
(1.00) 		0.389
(1.00) 		0.831
(1.00) 		0.717
(1.00) 		0.667
(1.00) 		0.498
(1.00) 		1
(1.00) 		0.485
(1.00) 		0.52
(1.00)
TCEB3C 26 (9%) 253 0.0847
(1.00) 		0.524
(1.00) 		0.771
(1.00) 		0.56
(1.00) 		0.682
(1.00) 		0.18
(1.00) 		0.932
(1.00) 		0.463
(1.00) 		0.958
(1.00) 		0.156
(1.00)
LRRC4C 41 (15%) 238 0.364
(1.00) 		0.186
(1.00) 		0.201
(1.00) 		0.615
(1.00) 		0.415
(1.00) 		0.0663
(1.00) 		0.585
(1.00) 		0.515
(1.00) 		0.907
(1.00) 		0.0995
(1.00)
SYCP1 28 (10%) 251 0.153
(1.00) 		0.0349
(1.00) 		0.145
(1.00) 		0.622
(1.00) 		0.0381
(1.00) 		0.347
(1.00) 		0.714
(1.00) 		0.438
(1.00) 		0.632
(1.00) 		0.488
(1.00)
RCAN2 15 (5%) 264 0.0468
(1.00) 		0.498
(1.00) 		0.596
(1.00) 		0.189
(1.00) 		0.424
(1.00) 		0.89
(1.00) 		0.217
(1.00) 		0.299
(1.00) 		0.209
(1.00) 		0.233
(1.00)
APCS 13 (5%) 266 0.879
(1.00) 		0.167
(1.00) 		0.887
(1.00) 		0.665
(1.00) 		0.489
(1.00) 		0.313
(1.00) 		0.582
(1.00) 		0.493
(1.00) 		0.632
(1.00) 		0.263
(1.00)
CYP3A7 25 (9%) 254 0.391
(1.00) 		0.0914
(1.00) 		0.651
(1.00) 		0.773
(1.00) 		0.116
(1.00) 		0.249
(1.00) 		0.487
(1.00) 		0.601
(1.00) 		0.189
(1.00) 		0.222
(1.00)
STXBP5L 55 (20%) 224 0.965
(1.00) 		0.454
(1.00) 		0.74
(1.00) 		0.11
(1.00) 		0.042
(1.00) 		0.0921
(1.00) 		0.856
(1.00) 		0.582
(1.00) 		0.858
(1.00) 		0.0462
(1.00)
LCE1B 14 (5%) 265 0.0852
(1.00) 		0.296
(1.00) 		0.947
(1.00) 		0.491
(1.00) 		0.176
(1.00) 		0.47
(1.00) 		0.769
(1.00) 		1
(1.00) 		0.568
(1.00) 		0.901
(1.00)
SCN5A 69 (25%) 210 0.976
(1.00) 		0.316
(1.00) 		0.163
(1.00) 		0.358
(1.00) 		0.922
(1.00) 		0.513
(1.00) 		0.643
(1.00) 		0.94
(1.00) 		0.669
(1.00) 		0.746
(1.00)
TPTE2 33 (12%) 246 0.559
(1.00) 		0.48
(1.00) 		0.213
(1.00) 		0.587
(1.00) 		0.685
(1.00) 		0.973
(1.00) 		0.102
(1.00) 		0.858
(1.00) 		0.0565
(1.00) 		0.407
(1.00)
LRTM1 26 (9%) 253 0.719
(1.00) 		0.475
(1.00) 		0.549
(1.00) 		0.794
(1.00) 		0.949
(1.00) 		0.551
(1.00) 		0.675
(1.00) 		0.242
(1.00) 		0.839
(1.00) 		0.571
(1.00)
SLC10A2 24 (9%) 255 0.177
(1.00) 		0.113
(1.00) 		0.113
(1.00) 		0.35
(1.00) 		0.127
(1.00) 		0.207
(1.00) 		0.578
(1.00) 		0.319
(1.00) 		0.661
(1.00) 		0.134
(1.00)
OR2W1 20 (7%) 259 0.0762
(1.00) 		0.488
(1.00) 		0.649
(1.00) 		0.349
(1.00) 		0.47
(1.00) 		0.522
(1.00) 		0.268
(1.00) 		0.882
(1.00) 		0.787
(1.00) 		1
(1.00)
NF1 38 (14%) 241 0.0984
(1.00) 		0.26
(1.00) 		0.508
(1.00) 		0.208
(1.00) 		0.349
(1.00) 		0.393
(1.00) 		0.144
(1.00) 		0.0889
(1.00) 		0.122
(1.00) 		0.242
(1.00)
ANGPT1 30 (11%) 249 0.504
(1.00) 		0.0173
(1.00) 		0.503
(1.00) 		0.815
(1.00) 		0.74
(1.00) 		0.95
(1.00) 		0.703
(1.00) 		0.984
(1.00) 		1
(1.00) 		0.837
(1.00)
C18ORF26 17 (6%) 262 0.146
(1.00) 		0.793
(1.00) 		0.611
(1.00) 		0.315
(1.00) 		0.312
(1.00) 		0.315
(1.00) 		0.893
(1.00) 		0.137
(1.00) 		0.14
(1.00) 		0.259
(1.00)
STK31 36 (13%) 243 0.104
(1.00) 		0.0261
(1.00) 		0.339
(1.00) 		0.442
(1.00) 		0.00225
(1.00) 		0.00516
(1.00) 		0.308
(1.00) 		0.519
(1.00) 		0.72
(1.00) 		0.0275
(1.00)
VSNL1 4 (1%) 275 0.563
(1.00) 		0.456
(1.00) 		0.159
(1.00) 		0.475
(1.00) 		0.388
(1.00) 		0.582
(1.00) 		0.287
(1.00) 		0.468
(1.00) 		0.391
(1.00) 		0.782
(1.00)
CRB1 52 (19%) 227 0.0361
(1.00) 		0.501
(1.00) 		0.373
(1.00) 		0.836
(1.00) 		0.0185
(1.00) 		0.0151
(1.00) 		0.157
(1.00) 		0.266
(1.00) 		0.0386
(1.00) 		0.164
(1.00)
PREX2 68 (24%) 211 0.454
(1.00) 		0.00339
(1.00) 		0.756
(1.00) 		0.485
(1.00) 		0.123
(1.00) 		0.393
(1.00) 		0.728
(1.00) 		0.171
(1.00) 		0.794
(1.00) 		0.052
(1.00)
COPG2 9 (3%) 270 0.355
(1.00) 		0.476
(1.00) 		0.666
(1.00) 		0.737
(1.00) 		0.835
(1.00) 		0.758
(1.00) 		0.428
(1.00) 		0.561
(1.00) 		0.437
(1.00) 		0.819
(1.00)
SPANXN5 8 (3%) 271 0.356
(1.00) 		0.179
(1.00) 		0.375
(1.00) 		0.563
(1.00) 		0.821
(1.00) 		0.66
(1.00) 		0.594
(1.00) 		0.897
(1.00) 		0.445
(1.00) 		0.829
(1.00)
NMS 13 (5%) 266 0.383
(1.00) 		0.297
(1.00) 		0.331
(1.00) 		1
(1.00) 		0.00678
(1.00) 		0.48
(1.00) 		0.878
(1.00) 		0.698
(1.00) 		0.937
(1.00) 		0.901
(1.00)
RERG 11 (4%) 268 0.343
(1.00) 		0.927
(1.00) 		0.668
(1.00) 		0.197
(1.00) 		0.741
(1.00) 		0.679
(1.00) 		0.055
(1.00) 		0.662
(1.00) 		0.134
(1.00) 		0.156
(1.00)
GLYATL2 25 (9%) 254 0.108
(1.00) 		0.0786
(1.00) 		0.881
(1.00) 		0.386
(1.00) 		0.156
(1.00) 		0.175
(1.00) 		0.296
(1.00) 		0.704
(1.00) 		0.0991
(1.00) 		0.624
(1.00)
POTEG 31 (11%) 248 0.0966
(1.00) 		0.03
(1.00) 		0.321
(1.00) 		0.227
(1.00) 		0.392
(1.00) 		0.115
(1.00) 		0.196
(1.00) 		0.28
(1.00) 		0.0855
(1.00) 		0.415
(1.00)
AREG 7 (3%) 272 0.797
(1.00) 		1
(1.00) 		0.713
(1.00) 		1
(1.00) 		0.892
(1.00) 		0.158
(1.00) 		0.796
(1.00) 		0.501
(1.00) 		0.392
(1.00) 		1
(1.00)
ACD 10 (4%) 269 0.173
(1.00) 		0.922
(1.00) 		0.922
(1.00) 		0.341
(1.00) 		0.558
(1.00) 		0.181
(1.00) 		0.167
(1.00) 		0.121
(1.00) 		0.92
(1.00) 		0.169
(1.00)
STARD6 12 (4%) 267 1
(1.00) 		0.206
(1.00) 		0.415
(1.00) 		1
(1.00) 		0.572
(1.00) 		0.563
(1.00) 		0.393
(1.00) 		0.086
(1.00) 		0.15
(1.00) 		0.123
(1.00)
FAM58A 5 (2%) 274 0.381
(1.00) 		0.851
(1.00) 		0.913
(1.00) 		0.454
(1.00) 		0.193
(1.00) 		0.526
(1.00) 		1
(1.00) 		0.331
(1.00) 		0.195
(1.00) 		0.337
(1.00)
CDK4 7 (3%) 272 0.797
(1.00) 		0.437
(1.00) 		0.0469
(1.00) 		0.563
(1.00) 		1
(1.00) 		0.631
(1.00) 		0.386
(1.00) 		0.453
(1.00) 		1
(1.00) 		0.44
(1.00)
PRSS48 6 (2%) 273 0.0784
(1.00) 		0.581
(1.00) 		0.342
(1.00) 		0.302
(1.00) 		0.00459
(1.00) 		0.0156
(1.00) 		0.579
(1.00) 		0.724
(1.00) 		0.0667
(1.00) 		0.226
(1.00)
TBC1D3B 5 (2%) 274 0.381
(1.00) 		0.851
(1.00) 		0.177
(1.00) 		0.178
(1.00) 		0.859
(1.00) 		0.862
(1.00) 		0.857
(1.00) 		0.798
(1.00) 		0.863
(1.00) 		0.757
(1.00)
COL4A4 72 (26%) 207 0.157
(1.00) 		0.129
(1.00) 		0.689
(1.00) 		0.535
(1.00) 		0.0794
(1.00) 		0.0168
(1.00) 		0.249
(1.00) 		0.877
(1.00) 		0.309
(1.00) 		0.181
(1.00)
LPAR1 13 (5%) 266 0.258
(1.00) 		0.0647
(1.00) 		0.77
(1.00) 		0.465
(1.00) 		0.103
(1.00) 		0.333
(1.00) 		0.808
(1.00) 		0.494
(1.00) 		0.574
(1.00) 		0.512
(1.00)
GNAI2 5 (2%) 274 0.638
(1.00) 		0.54
(1.00) 		0.34
(1.00) 		0.62
(1.00) 		1
(1.00) 		0.729
(1.00) 		0.612
(1.00) 		0.462
(1.00) 		0.163
(1.00) 		0.649
(1.00)
RPGRIP1 25 (9%) 254 0.0104
(1.00) 		0.646
(1.00) 		0.351
(1.00) 		0.448
(1.00) 		0.055
(1.00) 		0.0394
(1.00) 		0.239
(1.00) 		0.166
(1.00) 		0.0678
(1.00) 		0.0313
(1.00)
PTPRT 81 (29%) 198 0.489
(1.00) 		0.0858
(1.00) 		0.409
(1.00) 		0.409
(1.00) 		0.778
(1.00) 		0.56
(1.00) 		0.25
(1.00) 		0.555
(1.00) 		0.259
(1.00) 		0.0372
(1.00)
PDE1A 39 (14%) 240 0.144
(1.00) 		0.555
(1.00) 		0.746
(1.00) 		0.731
(1.00) 		0.0253
(1.00) 		0.113
(1.00) 		0.48
(1.00) 		0.227
(1.00) 		0.0681
(1.00) 		0.27
(1.00)
KIAA2022 54 (19%) 225 0.49
(1.00) 		0.134
(1.00) 		0.45
(1.00) 		0.489
(1.00) 		0.235
(1.00) 		0.484
(1.00) 		0.662
(1.00) 		0.346
(1.00) 		0.248
(1.00) 		0.0135
(1.00)
HRNR 56 (20%) 223 0.292
(1.00) 		0.215
(1.00) 		0.687
(1.00) 		0.573
(1.00) 		0.345
(1.00) 		0.305
(1.00) 		0.19
(1.00) 		0.413
(1.00) 		0.367
(1.00) 		0.426
(1.00)
EIF3D 4 (1%) 275 1
(1.00) 		0.834
(1.00) 		0.288
(1.00) 		0.62
(1.00) 		1
(1.00) 		0.817
(1.00) 		0.471
(1.00) 		0.545
(1.00) 		0.321
(1.00) 		0.492
(1.00)
SLC15A2 32 (11%) 247 0.529
(1.00) 		0.54
(1.00) 		0.74
(1.00) 		0.93
(1.00) 		0.555
(1.00) 		0.491
(1.00) 		0.639
(1.00) 		0.407
(1.00) 		0.583
(1.00) 		0.262
(1.00)
ST6GAL2 42 (15%) 237 0.52
(1.00) 		0.184
(1.00) 		0.419
(1.00) 		0.565
(1.00) 		0.915
(1.00) 		0.484
(1.00) 		0.597
(1.00) 		0.36
(1.00) 		0.453
(1.00) 		0.725
(1.00)
DNAJC5B 13 (5%) 266 0.014
(1.00) 		0.77
(1.00) 		0.825
(1.00) 		0.469
(1.00) 		0.77
(1.00) 		0.418
(1.00) 		0.00774
(1.00) 		0.338
(1.00) 		0.014
(1.00) 		0.0592
(1.00)
TAF1A 14 (5%) 265 0.62
(1.00) 		0.943
(1.00) 		0.833
(1.00) 		0.277
(1.00) 		1
(1.00) 		0.884
(1.00) 		0.248
(1.00) 		0.894
(1.00) 		0.143
(1.00) 		0.683
(1.00)
TRHDE 47 (17%) 232 0.112
(1.00) 		0.144
(1.00) 		0.314
(1.00) 		0.818
(1.00) 		0.241
(1.00) 		0.538
(1.00) 		0.47
(1.00) 		0.364
(1.00) 		0.288
(1.00) 		0.045
(1.00)
COL19A1 36 (13%) 243 0.298
(1.00) 		0.0933
(1.00) 		0.0942
(1.00) 		0.392
(1.00) 		0.745
(1.00) 		0.959
(1.00) 		0.694
(1.00) 		0.82
(1.00) 		0.508
(1.00) 		0.625
(1.00)
OR4K1 30 (11%) 249 0.661
(1.00) 		0.563
(1.00) 		0.171
(1.00) 		0.581
(1.00) 		0.904
(1.00) 		0.567
(1.00) 		0.43
(1.00) 		0.207
(1.00) 		0.702
(1.00) 		0.42
(1.00)
FASLG 12 (4%) 267 0.0186
(1.00) 		0.206
(1.00) 		0.425
(1.00) 		0.505
(1.00) 		0.34
(1.00) 		0.609
(1.00) 		0.325
(1.00) 		0.423
(1.00) 		0.087
(1.00) 		0.413
(1.00)
TMC5 45 (16%) 234 0.61
(1.00) 		0.0115
(1.00) 		0.432
(1.00) 		0.481
(1.00) 		0.000714
(1.00) 		0.0161
(1.00) 		0.1
(1.00) 		0.00601
(1.00) 		0.0755
(1.00) 		0.00995
(1.00)
NOP10 3 (1%) 276 0.781
(1.00) 		0.786
(1.00) 		0.395
(1.00) 		0.117
(1.00) 		1
(1.00) 		0.467
(1.00) 		1
(1.00) 		0.0426
(1.00) 		0.639
(1.00) 		0.839
(1.00)
CTNNB1 14 (5%) 265 0.299
(1.00) 		0.753
(1.00) 		0.301
(1.00) 		0.533
(1.00) 		0.336
(1.00) 		0.441
(1.00) 		0.582
(1.00) 		0.648
(1.00) 		0.937
(1.00) 		0.236
(1.00)
SNCAIP 49 (18%) 230 0.722
(1.00) 		0.666
(1.00) 		0.499
(1.00) 		0.777
(1.00) 		0.871
(1.00) 		0.37
(1.00) 		0.398
(1.00) 		0.413
(1.00) 		0.397
(1.00) 		0.232
(1.00)
CD2 21 (8%) 258 0.177
(1.00) 		0.119
(1.00) 		0.486
(1.00) 		0.752
(1.00) 		0.619
(1.00) 		0.671
(1.00) 		0.744
(1.00) 		0.666
(1.00) 		0.927
(1.00) 		0.524
(1.00)
SLC38A1 20 (7%) 259 0.798
(1.00) 		0.683
(1.00) 		0.432
(1.00) 		1
(1.00) 		0.541
(1.00) 		0.572
(1.00) 		0.759
(1.00) 		0.633
(1.00) 		0.291
(1.00) 		0.815
(1.00)
LIPI 25 (9%) 254 0.0471
(1.00) 		0.941
(1.00) 		0.856
(1.00) 		0.622
(1.00) 		0.297
(1.00) 		0.194
(1.00) 		0.738
(1.00) 		0.0627
(1.00) 		0.189
(1.00) 		0.0777
(1.00)
C7ORF58 35 (13%) 244 0.0737
(1.00) 		0.281
(1.00) 		0.0674
(1.00) 		0.106
(1.00) 		0.702
(1.00) 		0.909
(1.00) 		0.44
(1.00) 		0.519
(1.00) 		0.888
(1.00) 		0.541
(1.00)
COL5A1 56 (20%) 223 0.00621
(1.00) 		0.546
(1.00) 		0.225
(1.00) 		0.326
(1.00) 		0.172
(1.00) 		0.151
(1.00) 		0.665
(1.00) 		0.312
(1.00) 		0.139
(1.00) 		0.0622
(1.00)
SERPINA10 28 (10%) 251 0.967
(1.00) 		0.0349
(1.00) 		0.231
(1.00) 		0.176
(1.00) 		0.737
(1.00) 		0.743
(1.00) 		0.796
(1.00) 		0.558
(1.00) 		0.322
(1.00) 		0.764
(1.00)
C1ORF127 20 (7%) 259 0.238
(1.00) 		0.785
(1.00) 		0.576
(1.00) 		0.0509
(1.00) 		0.47
(1.00) 		0.452
(1.00) 		0.493
(1.00) 		0.836
(1.00) 		0.942
(1.00) 		0.947
(1.00)
TTN 202 (72%) 77 0.214
(1.00) 		0.000497
(0.837) 		0.436
(1.00) 		0.175
(1.00) 		0.429
(1.00) 		0.233
(1.00) 		0.0739
(1.00) 		0.299
(1.00) 		0.138
(1.00) 		0.387
(1.00)
DGAT2L6 11 (4%) 268 0.803
(1.00) 		0.536
(1.00) 		0.492
(1.00) 		0.629
(1.00) 		0.267
(1.00) 		0.458
(1.00) 		0.792
(1.00) 		0.684
(1.00) 		0.134
(1.00) 		0.519
(1.00)
C3ORF71 4 (1%) 275 0.145
(1.00) 		0.244
(1.00) 		0.485
(1.00) 		0.131
(1.00) 		0.144
(1.00) 		0.0922
(1.00) 		0.819
(1.00) 		0.176
(1.00) 		0.688
(1.00) 		0.389
(1.00)
SLC9A4 29 (10%) 250 0.199
(1.00) 		0.0208
(1.00) 		0.786
(1.00) 		0.677
(1.00) 		0.617
(1.00) 		0.746
(1.00) 		0.733
(1.00) 		0.971
(1.00) 		0.258
(1.00) 		0.742
(1.00)
MKX 17 (6%) 262 0.0831
(1.00) 		0.152
(1.00) 		1
(1.00) 		0.515
(1.00) 		0.0245
(1.00) 		0.0501
(1.00) 		0.178
(1.00) 		0.157
(1.00) 		0.0705
(1.00) 		0.00938
(1.00)
FAM19A1 13 (5%) 266 0.029
(1.00) 		1
(1.00) 		0.629
(1.00) 		0.0397
(1.00) 		0.637
(1.00) 		0.768
(1.00) 		0.769
(1.00) 		0.664
(1.00) 		0.937
(1.00) 		0.154
(1.00)
CERKL 18 (6%) 261 0.154
(1.00) 		0.0254
(1.00) 		0.771
(1.00) 		0.651
(1.00) 		0.629
(1.00) 		0.18
(1.00) 		0.734
(1.00) 		0.88
(1.00) 		1
(1.00) 		0.563
(1.00)
OR4K2 28 (10%) 251 0.0732
(1.00) 		0.00558
(1.00) 		0.984
(1.00) 		0.0107
(1.00) 		0.23
(1.00) 		0.184
(1.00) 		0.266
(1.00) 		0.625
(1.00) 		0.689
(1.00) 		0.576
(1.00)
GALNT14 21 (8%) 258 0.137
(1.00) 		0.73
(1.00) 		0.419
(1.00) 		0.929
(1.00) 		0.403
(1.00) 		0.684
(1.00) 		0.744
(1.00) 		0.337
(1.00) 		0.436
(1.00) 		0.631
(1.00)
C12ORF50 23 (8%) 256 0.184
(1.00) 		0.466
(1.00) 		0.621
(1.00) 		0.719
(1.00) 		0.87
(1.00) 		0.664
(1.00) 		0.567
(1.00) 		0.583
(1.00) 		0.287
(1.00) 		0.675
(1.00)
GK2 32 (11%) 247 0.638
(1.00) 		0.227
(1.00) 		0.337
(1.00) 		0.0722
(1.00) 		1
(1.00) 		0.678
(1.00) 		0.424
(1.00) 		0.882
(1.00) 		0.628
(1.00) 		0.27
(1.00)
RPAP1 13 (5%) 266 0.823
(1.00) 		0.531
(1.00) 		0.52
(1.00) 		0.278
(1.00) 		1
(1.00) 		1
(1.00) 		0.867
(1.00) 		0.962
(1.00) 		0.343
(1.00) 		0.871
(1.00)
IDO2 17 (6%) 262 0.531
(1.00) 		0.343
(1.00) 		0.0969
(1.00) 		0.533
(1.00) 		0.312
(1.00) 		0.684
(1.00) 		0.391
(1.00) 		0.481
(1.00) 		0.6
(1.00) 		0.265
(1.00)
ZIM3 26 (9%) 253 0.119
(1.00) 		0.192
(1.00) 		0.66
(1.00) 		0.315
(1.00) 		0.154
(1.00) 		0.921
(1.00) 		0.144
(1.00) 		0.451
(1.00) 		0.293
(1.00) 		0.123
(1.00)
MAP2K1 14 (5%) 265 0.0353
(1.00) 		0.00977
(1.00) 		0.389
(1.00) 		0.0861
(1.00) 		0.382
(1.00) 		0.245
(1.00) 		0.131
(1.00) 		0.066
(1.00) 		0.182
(1.00) 		0.554
(1.00)
GZMA 11 (4%) 268 0.803
(1.00) 		0.364
(1.00) 		0.748
(1.00) 		1
(1.00) 		0.927
(1.00) 		0.796
(1.00) 		0.579
(1.00) 		0.891
(1.00) 		0.547
(1.00) 		0.304
(1.00)
ACTC1 15 (5%) 264 0.0229
(1.00) 		0.328
(1.00) 		0.503
(1.00) 		0.349
(1.00) 		0.202
(1.00) 		0.133
(1.00) 		0.449
(1.00) 		0.355
(1.00) 		0.485
(1.00) 		0.0255
(1.00)
KCNB2 59 (21%) 220 0.222
(1.00) 		0.00426
(1.00) 		0.235
(1.00) 		0.656
(1.00) 		0.337
(1.00) 		0.481
(1.00) 		0.264
(1.00) 		0.442
(1.00) 		0.493
(1.00) 		0.161
(1.00)
ADAMTS2 29 (10%) 250 0.0648
(1.00) 		0.184
(1.00) 		0.18
(1.00) 		0.929
(1.00) 		0.778
(1.00) 		0.528
(1.00) 		0.453
(1.00) 		0.473
(1.00) 		0.368
(1.00) 		0.285
(1.00)
IL7R 30 (11%) 249 1
(1.00) 		0.0258
(1.00) 		0.309
(1.00) 		0.0304
(1.00) 		0.582
(1.00) 		0.407
(1.00) 		0.0048
(1.00) 		0.414
(1.00) 		0.0282
(1.00) 		0.193
(1.00)
DAAM2 7 (3%) 272 1
(1.00) 		0.0433
(1.00) 		0.441
(1.00) 		0.113
(1.00) 		0.487
(1.00) 		0.723
(1.00) 		0.442
(1.00) 		0.889
(1.00)
OR4N4 15 (5%) 264 0.00826
(1.00) 		0.451
(1.00) 		0.311
(1.00) 		0.418
(1.00) 		0.00176
(1.00) 		0.11
(1.00) 		0.169
(1.00) 		0.86
(1.00) 		0.881
(1.00) 		0.842
(1.00)
BMP5 26 (9%) 253 0.17
(1.00) 		0.000206
(0.347) 		0.113
(1.00) 		0.0331
(1.00) 		0.669
(1.00) 		1
(1.00) 		0.738
(1.00) 		0.677
(1.00) 		0.807
(1.00) 		0.804
(1.00)
RAPGEF5 15 (5%) 264 0.652
(1.00) 		1
(1.00) 		0.794
(1.00) 		0.831
(1.00) 		0.473
(1.00) 		0.475
(1.00) 		0.319
(1.00) 		0.206
(1.00) 		0.391
(1.00) 		0.343
(1.00)
HNF4G 26 (9%) 253 0.0379
(1.00) 		0.234
(1.00) 		0.44
(1.00) 		0.698
(1.00) 		0.355
(1.00) 		0.263
(1.00) 		0.178
(1.00) 		0.564
(1.00) 		0.353
(1.00) 		0.821
(1.00)
C8B 38 (14%) 241 0.54
(1.00) 		1
(1.00) 		0.0598
(1.00) 		0.341
(1.00) 		0.595
(1.00) 		0.188
(1.00) 		1
(1.00) 		0.349
(1.00) 		0.516
(1.00) 		0.247
(1.00)
CRNN 20 (7%) 259 0.487
(1.00) 		0.122
(1.00) 		0.00275
(1.00) 		0.302
(1.00) 		0.154
(1.00) 		0.179
(1.00) 		0.263
(1.00) 		0.69
(1.00) 		0.672
(1.00) 		0.585
(1.00)
DACH1 25 (9%) 254 0.41
(1.00) 		0.0786
(1.00) 		0.185
(1.00) 		1
(1.00) 		0.43
(1.00) 		0.49
(1.00) 		0.488
(1.00) 		0.0797
(1.00) 		0.28
(1.00) 		0.274
(1.00)
OPN5 8 (3%) 271 0.824
(1.00) 		1
(1.00) 		0.929
(1.00) 		1
(1.00) 		0.739
(1.00) 		0.596
(1.00) 		1
(1.00) 		0.723
(1.00) 		1
(1.00) 		0.889
(1.00)
ZSWIM2 30 (11%) 249 1
(1.00) 		0.639
(1.00) 		0.467
(1.00) 		0.125
(1.00) 		0.862
(1.00) 		0.129
(1.00) 		0.919
(1.00) 		0.648
(1.00) 		0.556
(1.00) 		0.105
(1.00)
MPP6 15 (5%) 264 0.435
(1.00) 		0.498
(1.00) 		0.503
(1.00) 		0.706
(1.00) 		0.0332
(1.00) 		0.4
(1.00) 		0.3
(1.00) 		0.355
(1.00) 		0.644
(1.00) 		0.393
(1.00)
UNC119B 6 (2%) 273 0.0638
(1.00) 		0.397
(1.00) 		0.228
(1.00) 		1
(1.00) 		0.586
(1.00) 		0.21
(1.00) 		0.857
(1.00) 		0.899
(1.00) 		0.632
(1.00) 		0.826
(1.00)
DCDC1 7 (3%) 272 0.116
(1.00) 		0.155
(1.00) 		0.34
(1.00) 		0.0568
(1.00) 		0.302
(1.00) 		0.888
(1.00) 		0.15
(1.00) 		0.788
(1.00) 		0.591
(1.00) 		0.764
(1.00)
WDR65 21 (8%) 258 0.473
(1.00) 		0.73
(1.00) 		0.788
(1.00) 		0.587
(1.00) 		0.383
(1.00) 		0.726
(1.00) 		0.0315
(1.00) 		0.426
(1.00) 		0.258
(1.00) 		0.806
(1.00)
PTPN22 24 (9%) 255 1
(1.00) 		0.106
(1.00) 		0.392
(1.00) 		0.0148
(1.00) 		0.383
(1.00) 		0.332
(1.00) 		0.337
(1.00) 		0.569
(1.00) 		0.192
(1.00) 		0.612
(1.00)
TFEC 20 (7%) 259 0.564
(1.00) 		0.168
(1.00) 		0.457
(1.00) 		0.315
(1.00) 		1
(1.00) 		0.919
(1.00) 		0.801
(1.00) 		0.543
(1.00) 		0.927
(1.00) 		0.524
(1.00)
COL1A1 38 (14%) 241 0.0966
(1.00) 		0.0394
(1.00) 		0.228
(1.00) 		0.313
(1.00) 		0.0903
(1.00) 		0.206
(1.00) 		0.457
(1.00) 		0.721
(1.00) 		0.142
(1.00) 		0.646
(1.00)
CAPSL 17 (6%) 262 0.225
(1.00) 		0.131
(1.00) 		0.793
(1.00) 		0.423
(1.00) 		0.0898
(1.00) 		0.0242
(1.00) 		0.734
(1.00) 		0.613
(1.00) 		0.876
(1.00) 		0.546
(1.00)
DDX3X 19 (7%) 260 0.781
(1.00) 		1
(1.00) 		0.928
(1.00) 		0.686
(1.00) 		0.636
(1.00) 		0.572
(1.00) 		0.935
(1.00) 		0.409
(1.00) 		0.521
(1.00) 		0.705
(1.00)
ACMSD 13 (5%) 266 0.823
(1.00) 		0.77
(1.00) 		0.692
(1.00) 		0.814
(1.00) 		0.489
(1.00) 		0.627
(1.00) 		0.718
(1.00) 		0.601
(1.00) 		0.725
(1.00) 		0.861
(1.00)
TIMD4 16 (6%) 263 0.833
(1.00) 		0.512
(1.00) 		0.887
(1.00) 		0.844
(1.00) 		0.406
(1.00) 		0.34
(1.00) 		0.715
(1.00) 		0.443
(1.00) 		0.576
(1.00) 		0.74
(1.00)
NOTCH4 51 (18%) 228 0.379
(1.00) 		0.888
(1.00) 		0.454
(1.00) 		0.203
(1.00) 		0.214
(1.00) 		0.287
(1.00) 		0.0402
(1.00) 		0.135
(1.00) 		0.121
(1.00) 		0.00216
(1.00)
C12ORF36 10 (4%) 269 0.56
(1.00) 		0.295
(1.00) 		0.623
(1.00) 		0.199
(1.00) 		0.558
(1.00) 		0.164
(1.00) 		0.223
(1.00) 		0.339
(1.00) 		0.0994
(1.00) 		0.811
(1.00)
SDPR 19 (7%) 260 0.462
(1.00) 		0.14
(1.00) 		0.952
(1.00) 		0.192
(1.00) 		0.333
(1.00) 		0.66
(1.00) 		0.728
(1.00) 		0.526
(1.00) 		0.672
(1.00) 		0.447
(1.00)
GPC5 31 (11%) 248 0.561
(1.00) 		0.667
(1.00) 		0.71
(1.00) 		0.642
(1.00) 		0.0717
(1.00) 		0.318
(1.00) 		0.667
(1.00) 		0.959
(1.00) 		0.818
(1.00) 		0.852
(1.00)
CCDC28A 10 (4%) 269 0.147
(1.00) 		0.56
(1.00) 		0.905
(1.00) 		0.339
(1.00) 		0.278
(1.00) 		0.922
(1.00) 		0.422
(1.00) 		0.48
(1.00) 		1
(1.00) 		0.784
(1.00)
MC2R 5 (2%) 274 0.104
(1.00) 		0.54
(1.00) 		1
(1.00) 		0.259
(1.00) 		1
(1.00) 		0.609
(1.00) 		0.323
(1.00) 		1
(1.00) 		0.132
(1.00) 		0.505
(1.00)
KL 26 (9%) 253 0.0379
(1.00) 		0.28
(1.00) 		0.0881
(1.00) 		0.407
(1.00) 		0.469
(1.00) 		0.861
(1.00) 		0.334
(1.00) 		0.304
(1.00) 		0.434
(1.00) 		0.128
(1.00)
'C15ORF23 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S1.  Gene #1: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
C15ORF23 MUTATED 6 4 9
C15ORF23 WILD-TYPE 98 72 90
'C15ORF23 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0639 (Fisher's exact test), Q value = 1

Table S2.  Gene #1: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
C15ORF23 MUTATED 1 10 8
C15ORF23 WILD-TYPE 70 90 100
'C15ORF23 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.699 (Fisher's exact test), Q value = 1

Table S3.  Gene #1: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
C15ORF23 MUTATED 4 3 2 1
C15ORF23 WILD-TYPE 43 54 25 37
'C15ORF23 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S4.  Gene #1: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
C15ORF23 MUTATED 5 3 2
C15ORF23 WILD-TYPE 62 56 41
'C15ORF23 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S5.  Gene #1: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
C15ORF23 MUTATED 6 7 6
C15ORF23 WILD-TYPE 87 72 101
'C15ORF23 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S6.  Gene #1: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
C15ORF23 MUTATED 3 11 5
C15ORF23 WILD-TYPE 70 111 79
'C15ORF23 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S7.  Gene #1: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
C15ORF23 MUTATED 3 7 6
C15ORF23 WILD-TYPE 65 110 79
'C15ORF23 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.527 (Fisher's exact test), Q value = 1

Table S8.  Gene #1: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
C15ORF23 MUTATED 1 0 4 11
C15ORF23 WILD-TYPE 28 28 66 132
'C15ORF23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S9.  Gene #1: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
C15ORF23 MUTATED 5 7 4
C15ORF23 WILD-TYPE 83 95 76
'C15ORF23 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S10.  Gene #1: 'C15ORF23 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
C15ORF23 MUTATED 1 7 4 4
C15ORF23 WILD-TYPE 24 105 80 45
'ANKRD20A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S11.  Gene #2: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
ANKRD20A4 MUTATED 1 2 3
ANKRD20A4 WILD-TYPE 103 74 96
'ANKRD20A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S12.  Gene #2: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
ANKRD20A4 MUTATED 0 3 3
ANKRD20A4 WILD-TYPE 71 97 105
'ANKRD20A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S13.  Gene #2: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
ANKRD20A4 MUTATED 2 1 0 1
ANKRD20A4 WILD-TYPE 45 56 27 37
'ANKRD20A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S14.  Gene #2: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
ANKRD20A4 MUTATED 2 1 1
ANKRD20A4 WILD-TYPE 65 58 42
'ANKRD20A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0651 (Fisher's exact test), Q value = 1

Table S15.  Gene #2: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
ANKRD20A4 MUTATED 0 4 2
ANKRD20A4 WILD-TYPE 93 75 105
'ANKRD20A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S16.  Gene #2: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
ANKRD20A4 MUTATED 0 5 1
ANKRD20A4 WILD-TYPE 73 117 83
'ANKRD20A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S17.  Gene #2: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
ANKRD20A4 MUTATED 1 3 2
ANKRD20A4 WILD-TYPE 67 114 83
'ANKRD20A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S18.  Gene #2: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
ANKRD20A4 MUTATED 0 0 2 4
ANKRD20A4 WILD-TYPE 29 28 68 139
'ANKRD20A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.774 (Fisher's exact test), Q value = 1

Table S19.  Gene #2: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
ANKRD20A4 MUTATED 1 3 2
ANKRD20A4 WILD-TYPE 87 99 78
'ANKRD20A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S20.  Gene #2: 'ANKRD20A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
ANKRD20A4 MUTATED 0 4 2 0
ANKRD20A4 WILD-TYPE 25 108 82 49
'CDKN2A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0271 (Fisher's exact test), Q value = 1

Table S21.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
CDKN2A MUTATED 14 18 9
CDKN2A WILD-TYPE 90 58 90

Figure S1.  Get High-res Image Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CDKN2A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0374 (Fisher's exact test), Q value = 1

Table S22.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
CDKN2A MUTATED 5 21 15
CDKN2A WILD-TYPE 66 79 93

Figure S2.  Get High-res Image Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CDKN2A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S23.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
CDKN2A MUTATED 7 6 8 6
CDKN2A WILD-TYPE 40 51 19 32
'CDKN2A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S24.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
CDKN2A MUTATED 13 6 8
CDKN2A WILD-TYPE 54 53 35
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S25.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
CDKN2A MUTATED 15 11 15
CDKN2A WILD-TYPE 78 68 92
'CDKN2A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.761 (Fisher's exact test), Q value = 1

Table S26.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
CDKN2A MUTATED 12 16 13
CDKN2A WILD-TYPE 61 106 71
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S27.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
CDKN2A MUTATED 8 19 13
CDKN2A WILD-TYPE 60 98 72
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S28.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
CDKN2A MUTATED 4 4 10 22
CDKN2A WILD-TYPE 25 24 60 121
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S29.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
CDKN2A MUTATED 15 15 10
CDKN2A WILD-TYPE 73 87 70
'CDKN2A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S30.  Gene #3: 'CDKN2A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
CDKN2A MUTATED 4 19 11 6
CDKN2A WILD-TYPE 21 93 73 43
'NRAS MUTATION STATUS' versus 'CN_CNMF'

P value = 8.28e-05 (Fisher's exact test), Q value = 0.14

Table S31.  Gene #4: 'NRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
NRAS MUTATED 44 10 32
NRAS WILD-TYPE 60 66 67

Figure S3.  Get High-res Image Gene #4: 'NRAS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'NRAS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0139 (Fisher's exact test), Q value = 1

Table S32.  Gene #4: 'NRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
NRAS MUTATED 21 41 24
NRAS WILD-TYPE 50 59 84

Figure S4.  Get High-res Image Gene #4: 'NRAS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'NRAS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S33.  Gene #4: 'NRAS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
NRAS MUTATED 16 19 7 9
NRAS WILD-TYPE 31 38 20 29
'NRAS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00542 (Fisher's exact test), Q value = 1

Table S34.  Gene #4: 'NRAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
NRAS MUTATED 11 23 17
NRAS WILD-TYPE 56 36 26

Figure S5.  Get High-res Image Gene #4: 'NRAS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'NRAS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S35.  Gene #4: 'NRAS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
NRAS MUTATED 27 22 37
NRAS WILD-TYPE 66 57 70
'NRAS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S36.  Gene #4: 'NRAS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
NRAS MUTATED 20 33 33
NRAS WILD-TYPE 53 89 51
'NRAS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.934 (Fisher's exact test), Q value = 1

Table S37.  Gene #4: 'NRAS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
NRAS MUTATED 20 37 25
NRAS WILD-TYPE 48 80 60
'NRAS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S38.  Gene #4: 'NRAS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
NRAS MUTATED 9 4 20 49
NRAS WILD-TYPE 20 24 50 94
'NRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S39.  Gene #4: 'NRAS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
NRAS MUTATED 30 32 20
NRAS WILD-TYPE 58 70 60
'NRAS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.282 (Fisher's exact test), Q value = 1

Table S40.  Gene #4: 'NRAS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
NRAS MUTATED 9 40 21 12
NRAS WILD-TYPE 16 72 63 37
'BRAF MUTATION STATUS' versus 'CN_CNMF'

P value = 4.38e-09 (Fisher's exact test), Q value = 7.4e-06

Table S41.  Gene #5: 'BRAF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
BRAF MUTATED 33 59 48
BRAF WILD-TYPE 71 17 51

Figure S6.  Get High-res Image Gene #5: 'BRAF MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'BRAF MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0177 (Fisher's exact test), Q value = 1

Table S42.  Gene #5: 'BRAF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
BRAF MUTATED 26 51 63
BRAF WILD-TYPE 45 49 45

Figure S7.  Get High-res Image Gene #5: 'BRAF MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BRAF MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S43.  Gene #5: 'BRAF MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
BRAF MUTATED 24 24 14 21
BRAF WILD-TYPE 23 33 13 17
'BRAF MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S44.  Gene #5: 'BRAF MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
BRAF MUTATED 37 24 22
BRAF WILD-TYPE 30 35 21
'BRAF MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.000638 (Fisher's exact test), Q value = 1

Table S45.  Gene #5: 'BRAF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
BRAF MUTATED 60 40 40
BRAF WILD-TYPE 33 39 67

Figure S8.  Get High-res Image Gene #5: 'BRAF MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'BRAF MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 4.14e-08 (Fisher's exact test), Q value = 7e-05

Table S46.  Gene #5: 'BRAF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
BRAF MUTATED 50 69 21
BRAF WILD-TYPE 23 53 63

Figure S9.  Get High-res Image Gene #5: 'BRAF MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'BRAF MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S47.  Gene #5: 'BRAF MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
BRAF MUTATED 38 51 46
BRAF WILD-TYPE 30 66 39
'BRAF MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00773 (Fisher's exact test), Q value = 1

Table S48.  Gene #5: 'BRAF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
BRAF MUTATED 17 21 37 60
BRAF WILD-TYPE 12 7 33 83

Figure S10.  Get High-res Image Gene #5: 'BRAF MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'BRAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S49.  Gene #5: 'BRAF MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
BRAF MUTATED 41 46 48
BRAF WILD-TYPE 47 56 32
'BRAF MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0574 (Fisher's exact test), Q value = 1

Table S50.  Gene #5: 'BRAF MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
BRAF MUTATED 14 45 49 27
BRAF WILD-TYPE 11 67 35 22
'OXA1L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S51.  Gene #6: 'OXA1L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
OXA1L MUTATED 5 0 3
OXA1L WILD-TYPE 99 76 96
'OXA1L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S52.  Gene #6: 'OXA1L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
OXA1L MUTATED 2 5 1
OXA1L WILD-TYPE 69 95 107
'OXA1L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S53.  Gene #6: 'OXA1L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
OXA1L MUTATED 1 2 1 1
OXA1L WILD-TYPE 46 55 26 37
'OXA1L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S54.  Gene #6: 'OXA1L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
OXA1L MUTATED 4 1 0
OXA1L WILD-TYPE 63 58 43
'OXA1L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S55.  Gene #6: 'OXA1L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
OXA1L MUTATED 1 3 4
OXA1L WILD-TYPE 92 76 103
'OXA1L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S56.  Gene #6: 'OXA1L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
OXA1L MUTATED 0 4 4
OXA1L WILD-TYPE 73 118 80
'OXA1L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.433 (Fisher's exact test), Q value = 1

Table S57.  Gene #6: 'OXA1L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
OXA1L MUTATED 3 4 1
OXA1L WILD-TYPE 65 113 84
'OXA1L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S58.  Gene #6: 'OXA1L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
OXA1L MUTATED 1 0 1 6
OXA1L WILD-TYPE 28 28 69 137
'OXA1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S59.  Gene #6: 'OXA1L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
OXA1L MUTATED 4 3 1
OXA1L WILD-TYPE 84 99 79
'OXA1L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.204 (Fisher's exact test), Q value = 1

Table S60.  Gene #6: 'OXA1L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
OXA1L MUTATED 1 6 1 0
OXA1L WILD-TYPE 24 106 83 49
'TP53 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S61.  Gene #7: 'TP53 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
TP53 MUTATED 15 9 23
TP53 WILD-TYPE 89 67 76
'TP53 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.017 (Fisher's exact test), Q value = 1

Table S62.  Gene #7: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
TP53 MUTATED 5 23 19
TP53 WILD-TYPE 66 77 89

Figure S11.  Get High-res Image Gene #7: 'TP53 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TP53 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S63.  Gene #7: 'TP53 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
TP53 MUTATED 5 8 3 10
TP53 WILD-TYPE 42 49 24 28
'TP53 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.32 (Fisher's exact test), Q value = 1

Table S64.  Gene #7: 'TP53 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
TP53 MUTATED 10 12 4
TP53 WILD-TYPE 57 47 39
'TP53 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.13 (Fisher's exact test), Q value = 1

Table S65.  Gene #7: 'TP53 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
TP53 MUTATED 12 19 16
TP53 WILD-TYPE 81 60 91
'TP53 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S66.  Gene #7: 'TP53 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
TP53 MUTATED 10 26 11
TP53 WILD-TYPE 63 96 73
'TP53 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.872 (Fisher's exact test), Q value = 1

Table S67.  Gene #7: 'TP53 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
TP53 MUTATED 9 19 14
TP53 WILD-TYPE 59 98 71
'TP53 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S68.  Gene #7: 'TP53 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
TP53 MUTATED 4 4 9 25
TP53 WILD-TYPE 25 24 61 118
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S69.  Gene #7: 'TP53 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
TP53 MUTATED 15 17 10
TP53 WILD-TYPE 73 85 70
'TP53 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.464 (Fisher's exact test), Q value = 1

Table S70.  Gene #7: 'TP53 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
TP53 MUTATED 4 22 10 6
TP53 WILD-TYPE 21 90 74 43
'STK19 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S71.  Gene #8: 'STK19 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
STK19 MUTATED 6 2 5
STK19 WILD-TYPE 98 74 94
'STK19 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0647 (Fisher's exact test), Q value = 1

Table S72.  Gene #8: 'STK19 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
STK19 MUTATED 0 6 7
STK19 WILD-TYPE 71 94 101
'STK19 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S73.  Gene #8: 'STK19 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
STK19 MUTATED 2 0 2 2
STK19 WILD-TYPE 45 57 25 36
'STK19 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S74.  Gene #8: 'STK19 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
STK19 MUTATED 3 3 0
STK19 WILD-TYPE 64 56 43
'STK19 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S75.  Gene #8: 'STK19 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
STK19 MUTATED 3 5 5
STK19 WILD-TYPE 90 74 102
'STK19 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S76.  Gene #8: 'STK19 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
STK19 MUTATED 2 7 4
STK19 WILD-TYPE 71 115 80
'STK19 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.602 (Fisher's exact test), Q value = 1

Table S77.  Gene #8: 'STK19 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
STK19 MUTATED 2 7 3
STK19 WILD-TYPE 66 110 82
'STK19 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S78.  Gene #8: 'STK19 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
STK19 MUTATED 0 0 3 9
STK19 WILD-TYPE 29 28 67 134
'STK19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S79.  Gene #8: 'STK19 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
STK19 MUTATED 2 7 3
STK19 WILD-TYPE 86 95 77
'STK19 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.385 (Fisher's exact test), Q value = 1

Table S80.  Gene #8: 'STK19 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
STK19 MUTATED 0 8 3 1
STK19 WILD-TYPE 25 104 81 48
'TMEM216 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0964 (Fisher's exact test), Q value = 1

Table S81.  Gene #9: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
TMEM216 MUTATED 1 5 2
TMEM216 WILD-TYPE 103 71 97
'TMEM216 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S82.  Gene #9: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
TMEM216 MUTATED 3 1 4
TMEM216 WILD-TYPE 68 99 104
'TMEM216 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0682 (Fisher's exact test), Q value = 1

Table S83.  Gene #9: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
TMEM216 MUTATED 4 0 2 1
TMEM216 WILD-TYPE 43 57 25 37
'TMEM216 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S84.  Gene #9: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
TMEM216 MUTATED 4 1 2
TMEM216 WILD-TYPE 63 58 41
'TMEM216 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S85.  Gene #9: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
TMEM216 MUTATED 3 3 2
TMEM216 WILD-TYPE 90 76 105
'TMEM216 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.812 (Fisher's exact test), Q value = 1

Table S86.  Gene #9: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
TMEM216 MUTATED 3 3 2
TMEM216 WILD-TYPE 70 119 82
'TMEM216 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S87.  Gene #9: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
TMEM216 MUTATED 3 3 2
TMEM216 WILD-TYPE 65 114 83
'TMEM216 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S88.  Gene #9: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
TMEM216 MUTATED 0 0 4 4
TMEM216 WILD-TYPE 29 28 66 139
'TMEM216 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S89.  Gene #9: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
TMEM216 MUTATED 4 2 2
TMEM216 WILD-TYPE 84 100 78
'TMEM216 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.716 (Fisher's exact test), Q value = 1

Table S90.  Gene #9: 'TMEM216 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
TMEM216 MUTATED 0 3 4 1
TMEM216 WILD-TYPE 25 109 80 48
'PCDHAC2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.854 (Fisher's exact test), Q value = 1

Table S91.  Gene #10: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
PCDHAC2 MUTATED 56 43 57
PCDHAC2 WILD-TYPE 48 33 42
'PCDHAC2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0285 (Fisher's exact test), Q value = 1

Table S92.  Gene #10: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
PCDHAC2 MUTATED 30 61 65
PCDHAC2 WILD-TYPE 41 39 43

Figure S12.  Get High-res Image Gene #10: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PCDHAC2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S93.  Gene #10: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
PCDHAC2 MUTATED 27 29 17 25
PCDHAC2 WILD-TYPE 20 28 10 13
'PCDHAC2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S94.  Gene #10: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
PCDHAC2 MUTATED 38 37 23
PCDHAC2 WILD-TYPE 29 22 20
'PCDHAC2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S95.  Gene #10: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
PCDHAC2 MUTATED 52 47 57
PCDHAC2 WILD-TYPE 41 32 50
'PCDHAC2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.354 (Fisher's exact test), Q value = 1

Table S96.  Gene #10: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
PCDHAC2 MUTATED 39 74 43
PCDHAC2 WILD-TYPE 34 48 41
'PCDHAC2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S97.  Gene #10: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
PCDHAC2 MUTATED 39 67 46
PCDHAC2 WILD-TYPE 29 50 39
'PCDHAC2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.875 (Fisher's exact test), Q value = 1

Table S98.  Gene #10: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
PCDHAC2 MUTATED 16 14 39 83
PCDHAC2 WILD-TYPE 13 14 31 60
'PCDHAC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S99.  Gene #10: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
PCDHAC2 MUTATED 49 62 41
PCDHAC2 WILD-TYPE 39 40 39
'PCDHAC2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.283 (Fisher's exact test), Q value = 1

Table S100.  Gene #10: 'PCDHAC2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
PCDHAC2 MUTATED 13 70 46 23
PCDHAC2 WILD-TYPE 12 42 38 26
'PTEN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S101.  Gene #11: 'PTEN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
PTEN MUTATED 11 7 5
PTEN WILD-TYPE 93 69 94
'PTEN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0614 (Fisher's exact test), Q value = 1

Table S102.  Gene #11: 'PTEN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
PTEN MUTATED 9 10 4
PTEN WILD-TYPE 62 90 104
'PTEN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0868 (Fisher's exact test), Q value = 1

Table S103.  Gene #11: 'PTEN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
PTEN MUTATED 4 8 0 1
PTEN WILD-TYPE 43 49 27 37
'PTEN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S104.  Gene #11: 'PTEN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
PTEN MUTATED 4 8 1
PTEN WILD-TYPE 63 51 42
'PTEN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 1

Table S105.  Gene #11: 'PTEN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
PTEN MUTATED 11 6 6
PTEN WILD-TYPE 82 73 101
'PTEN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0465 (Fisher's exact test), Q value = 1

Table S106.  Gene #11: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
PTEN MUTATED 10 5 8
PTEN WILD-TYPE 63 117 76

Figure S13.  Get High-res Image Gene #11: 'PTEN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PTEN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S107.  Gene #11: 'PTEN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
PTEN MUTATED 7 9 7
PTEN WILD-TYPE 61 108 78
'PTEN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0521 (Fisher's exact test), Q value = 1

Table S108.  Gene #11: 'PTEN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
PTEN MUTATED 5 5 5 8
PTEN WILD-TYPE 24 23 65 135
'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.459 (Fisher's exact test), Q value = 1

Table S109.  Gene #11: 'PTEN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
PTEN MUTATED 9 6 8
PTEN WILD-TYPE 79 96 72
'PTEN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S110.  Gene #11: 'PTEN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
PTEN MUTATED 4 7 7 5
PTEN WILD-TYPE 21 105 77 44
'MRPS31 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S111.  Gene #12: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
MRPS31 MUTATED 8 4 7
MRPS31 WILD-TYPE 96 72 92
'MRPS31 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.02 (Fisher's exact test), Q value = 1

Table S112.  Gene #12: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
MRPS31 MUTATED 7 10 2
MRPS31 WILD-TYPE 64 90 106

Figure S14.  Get High-res Image Gene #12: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MRPS31 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.964 (Fisher's exact test), Q value = 1

Table S113.  Gene #12: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
MRPS31 MUTATED 2 4 1 2
MRPS31 WILD-TYPE 45 53 26 36
'MRPS31 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S114.  Gene #12: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
MRPS31 MUTATED 3 3 3
MRPS31 WILD-TYPE 64 56 40
'MRPS31 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0669 (Fisher's exact test), Q value = 1

Table S115.  Gene #12: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
MRPS31 MUTATED 5 2 12
MRPS31 WILD-TYPE 88 77 95
'MRPS31 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S116.  Gene #12: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
MRPS31 MUTATED 5 6 8
MRPS31 WILD-TYPE 68 116 76
'MRPS31 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S117.  Gene #12: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
MRPS31 MUTATED 2 11 5
MRPS31 WILD-TYPE 66 106 80
'MRPS31 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S118.  Gene #12: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
MRPS31 MUTATED 1 1 3 13
MRPS31 WILD-TYPE 28 27 67 130
'MRPS31 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S119.  Gene #12: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
MRPS31 MUTATED 3 11 4
MRPS31 WILD-TYPE 85 91 76
'MRPS31 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S120.  Gene #12: 'MRPS31 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
MRPS31 MUTATED 0 10 4 4
MRPS31 WILD-TYPE 25 102 80 45
'PCDHGC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.822 (Fisher's exact test), Q value = 1

Table S121.  Gene #13: 'PCDHGC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
PCDHGC5 MUTATED 54 36 51
PCDHGC5 WILD-TYPE 50 40 48
'PCDHGC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0264 (Fisher's exact test), Q value = 1

Table S122.  Gene #13: 'PCDHGC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
PCDHGC5 MUTATED 27 59 55
PCDHGC5 WILD-TYPE 44 41 53

Figure S15.  Get High-res Image Gene #13: 'PCDHGC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PCDHGC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.958 (Fisher's exact test), Q value = 1

Table S123.  Gene #13: 'PCDHGC5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
PCDHGC5 MUTATED 24 32 15 21
PCDHGC5 WILD-TYPE 23 25 12 17
'PCDHGC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S124.  Gene #13: 'PCDHGC5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
PCDHGC5 MUTATED 38 33 21
PCDHGC5 WILD-TYPE 29 26 22
'PCDHGC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S125.  Gene #13: 'PCDHGC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
PCDHGC5 MUTATED 43 48 50
PCDHGC5 WILD-TYPE 50 31 57
'PCDHGC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S126.  Gene #13: 'PCDHGC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
PCDHGC5 MUTATED 32 66 43
PCDHGC5 WILD-TYPE 41 56 41
'PCDHGC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S127.  Gene #13: 'PCDHGC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
PCDHGC5 MUTATED 40 58 39
PCDHGC5 WILD-TYPE 28 59 46
'PCDHGC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0661 (Fisher's exact test), Q value = 1

Table S128.  Gene #13: 'PCDHGC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
PCDHGC5 MUTATED 17 8 34 78
PCDHGC5 WILD-TYPE 12 20 36 65
'PCDHGC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.198 (Fisher's exact test), Q value = 1

Table S129.  Gene #13: 'PCDHGC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
PCDHGC5 MUTATED 49 54 34
PCDHGC5 WILD-TYPE 39 48 46
'PCDHGC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 1

Table S130.  Gene #13: 'PCDHGC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
PCDHGC5 MUTATED 15 62 39 21
PCDHGC5 WILD-TYPE 10 50 45 28
'BAGE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S131.  Gene #14: 'BAGE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
BAGE MUTATED 5 0 3
BAGE WILD-TYPE 99 76 96
'BAGE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S132.  Gene #14: 'BAGE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
BAGE MUTATED 1 2 5
BAGE WILD-TYPE 70 98 103
'BAGE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S133.  Gene #14: 'BAGE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
BAGE MUTATED 1 1 1 2
BAGE WILD-TYPE 46 56 26 36
'BAGE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S134.  Gene #14: 'BAGE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
BAGE MUTATED 2 1 2
BAGE WILD-TYPE 65 58 41
'BAGE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.396 (Fisher's exact test), Q value = 1

Table S135.  Gene #14: 'BAGE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
BAGE MUTATED 2 1 5
BAGE WILD-TYPE 91 78 102
'BAGE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S136.  Gene #14: 'BAGE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
BAGE MUTATED 2 2 4
BAGE WILD-TYPE 71 120 80
'BAGE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S137.  Gene #14: 'BAGE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
BAGE MUTATED 3 2 3
BAGE WILD-TYPE 65 115 82
'BAGE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.847 (Fisher's exact test), Q value = 1

Table S138.  Gene #14: 'BAGE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
BAGE MUTATED 1 0 3 4
BAGE WILD-TYPE 28 28 67 139
'BAGE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.906 (Fisher's exact test), Q value = 1

Table S139.  Gene #14: 'BAGE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
BAGE MUTATED 2 3 3
BAGE WILD-TYPE 86 99 77
'BAGE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.63 (Fisher's exact test), Q value = 1

Table S140.  Gene #14: 'BAGE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
BAGE MUTATED 1 4 3 0
BAGE WILD-TYPE 24 108 81 49
'DSG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S141.  Gene #15: 'DSG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
DSG1 MUTATED 15 14 16
DSG1 WILD-TYPE 89 62 83
'DSG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S142.  Gene #15: 'DSG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
DSG1 MUTATED 8 19 18
DSG1 WILD-TYPE 63 81 90
'DSG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S143.  Gene #15: 'DSG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
DSG1 MUTATED 12 5 4 8
DSG1 WILD-TYPE 35 52 23 30
'DSG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S144.  Gene #15: 'DSG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
DSG1 MUTATED 11 9 9
DSG1 WILD-TYPE 56 50 34
'DSG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S145.  Gene #15: 'DSG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
DSG1 MUTATED 16 15 14
DSG1 WILD-TYPE 77 64 93
'DSG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S146.  Gene #15: 'DSG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
DSG1 MUTATED 13 21 11
DSG1 WILD-TYPE 60 101 73
'DSG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S147.  Gene #15: 'DSG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
DSG1 MUTATED 10 18 14
DSG1 WILD-TYPE 58 99 71
'DSG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.605 (Fisher's exact test), Q value = 1

Table S148.  Gene #15: 'DSG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
DSG1 MUTATED 5 3 14 20
DSG1 WILD-TYPE 24 25 56 123
'DSG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S149.  Gene #15: 'DSG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
DSG1 MUTATED 16 14 12
DSG1 WILD-TYPE 72 88 68
'DSG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S150.  Gene #15: 'DSG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
DSG1 MUTATED 4 19 15 4
DSG1 WILD-TYPE 21 93 69 45
'RAC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0473 (Fisher's exact test), Q value = 1

Table S151.  Gene #16: 'RAC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
RAC1 MUTATED 10 1 9
RAC1 WILD-TYPE 94 75 90

Figure S16.  Get High-res Image Gene #16: 'RAC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RAC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S152.  Gene #16: 'RAC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
RAC1 MUTATED 4 5 11
RAC1 WILD-TYPE 67 95 97
'RAC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S153.  Gene #16: 'RAC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
RAC1 MUTATED 5 3 2 3
RAC1 WILD-TYPE 42 54 25 35
'RAC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S154.  Gene #16: 'RAC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
RAC1 MUTATED 3 7 3
RAC1 WILD-TYPE 64 52 40
'RAC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S155.  Gene #16: 'RAC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
RAC1 MUTATED 5 7 8
RAC1 WILD-TYPE 88 72 99
'RAC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S156.  Gene #16: 'RAC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
RAC1 MUTATED 5 9 6
RAC1 WILD-TYPE 68 113 78
'RAC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S157.  Gene #16: 'RAC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
RAC1 MUTATED 9 7 4
RAC1 WILD-TYPE 59 110 81
'RAC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S158.  Gene #16: 'RAC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
RAC1 MUTATED 3 1 8 8
RAC1 WILD-TYPE 26 27 62 135
'RAC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.087 (Fisher's exact test), Q value = 1

Table S159.  Gene #16: 'RAC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
RAC1 MUTATED 11 6 3
RAC1 WILD-TYPE 77 96 77
'RAC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S160.  Gene #16: 'RAC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
RAC1 MUTATED 2 8 9 1
RAC1 WILD-TYPE 23 104 75 48
'PPP6C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S161.  Gene #17: 'PPP6C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
PPP6C MUTATED 6 7 7
PPP6C WILD-TYPE 98 69 92
'PPP6C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S162.  Gene #17: 'PPP6C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
PPP6C MUTATED 3 10 7
PPP6C WILD-TYPE 68 90 101
'PPP6C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S163.  Gene #17: 'PPP6C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
PPP6C MUTATED 5 2 2 2
PPP6C WILD-TYPE 42 55 25 36
'PPP6C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.253 (Fisher's exact test), Q value = 1

Table S164.  Gene #17: 'PPP6C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
PPP6C MUTATED 4 2 5
PPP6C WILD-TYPE 63 57 38
'PPP6C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S165.  Gene #17: 'PPP6C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
PPP6C MUTATED 8 6 6
PPP6C WILD-TYPE 85 73 101
'PPP6C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S166.  Gene #17: 'PPP6C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
PPP6C MUTATED 7 7 6
PPP6C WILD-TYPE 66 115 78
'PPP6C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S167.  Gene #17: 'PPP6C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
PPP6C MUTATED 7 7 6
PPP6C WILD-TYPE 61 110 79
'PPP6C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S168.  Gene #17: 'PPP6C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
PPP6C MUTATED 4 1 7 8
PPP6C WILD-TYPE 25 27 63 135
'PPP6C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S169.  Gene #17: 'PPP6C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
PPP6C MUTATED 8 5 7
PPP6C WILD-TYPE 80 97 73
'PPP6C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S170.  Gene #17: 'PPP6C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
PPP6C MUTATED 3 7 7 3
PPP6C WILD-TYPE 22 105 77 46
'SERPINB3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.507 (Fisher's exact test), Q value = 1

Table S171.  Gene #18: 'SERPINB3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
SERPINB3 MUTATED 15 9 18
SERPINB3 WILD-TYPE 89 67 81
'SERPINB3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.969 (Fisher's exact test), Q value = 1

Table S172.  Gene #18: 'SERPINB3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
SERPINB3 MUTATED 10 15 17
SERPINB3 WILD-TYPE 61 85 91
'SERPINB3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S173.  Gene #18: 'SERPINB3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
SERPINB3 MUTATED 13 7 6 4
SERPINB3 WILD-TYPE 34 50 21 34
'SERPINB3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S174.  Gene #18: 'SERPINB3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
SERPINB3 MUTATED 11 8 11
SERPINB3 WILD-TYPE 56 51 32
'SERPINB3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S175.  Gene #18: 'SERPINB3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
SERPINB3 MUTATED 15 13 14
SERPINB3 WILD-TYPE 78 66 93
'SERPINB3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.399 (Fisher's exact test), Q value = 1

Table S176.  Gene #18: 'SERPINB3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
SERPINB3 MUTATED 12 21 9
SERPINB3 WILD-TYPE 61 101 75
'SERPINB3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.604 (Fisher's exact test), Q value = 1

Table S177.  Gene #18: 'SERPINB3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
SERPINB3 MUTATED 12 15 14
SERPINB3 WILD-TYPE 56 102 71
'SERPINB3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S178.  Gene #18: 'SERPINB3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
SERPINB3 MUTATED 5 3 13 20
SERPINB3 WILD-TYPE 24 25 57 123
'SERPINB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S179.  Gene #18: 'SERPINB3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
SERPINB3 MUTATED 13 14 14
SERPINB3 WILD-TYPE 75 88 66
'SERPINB3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.974 (Fisher's exact test), Q value = 1

Table S180.  Gene #18: 'SERPINB3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
SERPINB3 MUTATED 3 17 13 8
SERPINB3 WILD-TYPE 22 95 71 41
'TSHB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S181.  Gene #19: 'TSHB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
TSHB MUTATED 1 0 4
TSHB WILD-TYPE 103 76 95
'TSHB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S182.  Gene #19: 'TSHB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
TSHB MUTATED 0 2 3
TSHB WILD-TYPE 71 98 105
'TSHB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S183.  Gene #19: 'TSHB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
TSHB MUTATED 1 0 1 1
TSHB WILD-TYPE 46 57 26 37
'TSHB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S184.  Gene #19: 'TSHB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
TSHB MUTATED 2 1 0
TSHB WILD-TYPE 65 58 43
'TSHB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S185.  Gene #19: 'TSHB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
TSHB MUTATED 0 2 3
TSHB WILD-TYPE 93 77 104
'TSHB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S186.  Gene #19: 'TSHB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
TSHB MUTATED 0 4 1
TSHB WILD-TYPE 73 118 83
'TSHB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S187.  Gene #19: 'TSHB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
TSHB MUTATED 1 2 2
TSHB WILD-TYPE 67 115 83
'TSHB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S188.  Gene #19: 'TSHB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
TSHB MUTATED 0 0 2 3
TSHB WILD-TYPE 29 28 68 140
'TSHB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S189.  Gene #19: 'TSHB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
TSHB MUTATED 1 2 2
TSHB WILD-TYPE 87 100 78
'TSHB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S190.  Gene #19: 'TSHB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
TSHB MUTATED 0 2 2 1
TSHB WILD-TYPE 25 110 82 48
'NDUFB9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S191.  Gene #20: 'NDUFB9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
NDUFB9 MUTATED 3 3 2
NDUFB9 WILD-TYPE 101 73 97
'NDUFB9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.283 (Fisher's exact test), Q value = 1

Table S192.  Gene #20: 'NDUFB9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
NDUFB9 MUTATED 3 4 1
NDUFB9 WILD-TYPE 68 96 107
'NDUFB9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 1

Table S193.  Gene #20: 'NDUFB9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
NDUFB9 MUTATED 0 4 1 0
NDUFB9 WILD-TYPE 47 53 26 38
'NDUFB9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.446 (Fisher's exact test), Q value = 1

Table S194.  Gene #20: 'NDUFB9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
NDUFB9 MUTATED 3 2 0
NDUFB9 WILD-TYPE 64 57 43
'NDUFB9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0322 (Fisher's exact test), Q value = 1

Table S195.  Gene #20: 'NDUFB9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
NDUFB9 MUTATED 6 0 2
NDUFB9 WILD-TYPE 87 79 105

Figure S17.  Get High-res Image Gene #20: 'NDUFB9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NDUFB9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0714 (Fisher's exact test), Q value = 1

Table S196.  Gene #20: 'NDUFB9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
NDUFB9 MUTATED 5 2 1
NDUFB9 WILD-TYPE 68 120 83
'NDUFB9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S197.  Gene #20: 'NDUFB9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
NDUFB9 MUTATED 4 3 1
NDUFB9 WILD-TYPE 64 114 84
'NDUFB9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S198.  Gene #20: 'NDUFB9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
NDUFB9 MUTATED 2 0 2 4
NDUFB9 WILD-TYPE 27 28 68 139
'NDUFB9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S199.  Gene #20: 'NDUFB9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
NDUFB9 MUTATED 5 2 1
NDUFB9 WILD-TYPE 83 100 79
'NDUFB9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S200.  Gene #20: 'NDUFB9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
NDUFB9 MUTATED 2 3 2 1
NDUFB9 WILD-TYPE 23 109 82 48
'MS4A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0476 (Fisher's exact test), Q value = 1

Table S201.  Gene #21: 'MS4A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
MS4A2 MUTATED 3 1 9
MS4A2 WILD-TYPE 101 75 90

Figure S18.  Get High-res Image Gene #21: 'MS4A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MS4A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S202.  Gene #21: 'MS4A2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
MS4A2 MUTATED 2 5 6
MS4A2 WILD-TYPE 69 95 102
'MS4A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S203.  Gene #21: 'MS4A2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
MS4A2 MUTATED 3 3 1 2
MS4A2 WILD-TYPE 44 54 26 36
'MS4A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S204.  Gene #21: 'MS4A2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
MS4A2 MUTATED 4 3 2
MS4A2 WILD-TYPE 63 56 41
'MS4A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S205.  Gene #21: 'MS4A2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
MS4A2 MUTATED 3 4 6
MS4A2 WILD-TYPE 90 75 101
'MS4A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.514 (Fisher's exact test), Q value = 1

Table S206.  Gene #21: 'MS4A2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
MS4A2 MUTATED 4 7 2
MS4A2 WILD-TYPE 69 115 82
'MS4A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S207.  Gene #21: 'MS4A2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
MS4A2 MUTATED 2 6 5
MS4A2 WILD-TYPE 66 111 80
'MS4A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S208.  Gene #21: 'MS4A2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
MS4A2 MUTATED 0 1 5 7
MS4A2 WILD-TYPE 29 27 65 136
'MS4A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S209.  Gene #21: 'MS4A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
MS4A2 MUTATED 4 5 4
MS4A2 WILD-TYPE 84 97 76
'MS4A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S210.  Gene #21: 'MS4A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
MS4A2 MUTATED 0 6 5 2
MS4A2 WILD-TYPE 25 106 79 47
'RPS27 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S211.  Gene #22: 'RPS27 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
RPS27 MUTATED 12 4 8
RPS27 WILD-TYPE 92 72 91
'RPS27 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S212.  Gene #22: 'RPS27 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
RPS27 MUTATED 6 9 9
RPS27 WILD-TYPE 65 91 99
'RPS27 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S213.  Gene #22: 'RPS27 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
RPS27 MUTATED 5 6 2 4
RPS27 WILD-TYPE 42 51 25 34
'RPS27 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.838 (Fisher's exact test), Q value = 1

Table S214.  Gene #22: 'RPS27 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
RPS27 MUTATED 6 7 4
RPS27 WILD-TYPE 61 52 39
'RPS27 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.841 (Fisher's exact test), Q value = 1

Table S215.  Gene #22: 'RPS27 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
RPS27 MUTATED 7 8 9
RPS27 WILD-TYPE 86 71 98
'RPS27 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S216.  Gene #22: 'RPS27 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
RPS27 MUTATED 5 12 7
RPS27 WILD-TYPE 68 110 77
'RPS27 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S217.  Gene #22: 'RPS27 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
RPS27 MUTATED 7 10 6
RPS27 WILD-TYPE 61 107 79
'RPS27 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S218.  Gene #22: 'RPS27 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
RPS27 MUTATED 2 3 5 13
RPS27 WILD-TYPE 27 25 65 130
'RPS27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.707 (Fisher's exact test), Q value = 1

Table S219.  Gene #22: 'RPS27 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
RPS27 MUTATED 8 10 5
RPS27 WILD-TYPE 80 92 75
'RPS27 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S220.  Gene #22: 'RPS27 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
RPS27 MUTATED 1 12 8 2
RPS27 WILD-TYPE 24 100 76 47
'PPIAL4G MUTATION STATUS' versus 'CN_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S221.  Gene #23: 'PPIAL4G MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
PPIAL4G MUTATED 9 2 4
PPIAL4G WILD-TYPE 95 74 95
'PPIAL4G MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S222.  Gene #23: 'PPIAL4G MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
PPIAL4G MUTATED 5 5 5
PPIAL4G WILD-TYPE 66 95 103
'PPIAL4G MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S223.  Gene #23: 'PPIAL4G MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
PPIAL4G MUTATED 3 3 1 2
PPIAL4G WILD-TYPE 44 54 26 36
'PPIAL4G MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.754 (Fisher's exact test), Q value = 1

Table S224.  Gene #23: 'PPIAL4G MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
PPIAL4G MUTATED 4 2 3
PPIAL4G WILD-TYPE 63 57 40
'PPIAL4G MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.352 (Fisher's exact test), Q value = 1

Table S225.  Gene #23: 'PPIAL4G MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
PPIAL4G MUTATED 5 2 8
PPIAL4G WILD-TYPE 88 77 99
'PPIAL4G MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S226.  Gene #23: 'PPIAL4G MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
PPIAL4G MUTATED 5 3 7
PPIAL4G WILD-TYPE 68 119 77
'PPIAL4G MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S227.  Gene #23: 'PPIAL4G MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
PPIAL4G MUTATED 3 6 5
PPIAL4G WILD-TYPE 65 111 80
'PPIAL4G MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S228.  Gene #23: 'PPIAL4G MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
PPIAL4G MUTATED 0 0 5 9
PPIAL4G WILD-TYPE 29 28 65 134
'PPIAL4G MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S229.  Gene #23: 'PPIAL4G MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
PPIAL4G MUTATED 2 8 4
PPIAL4G WILD-TYPE 86 94 76
'PPIAL4G MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S230.  Gene #23: 'PPIAL4G MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
PPIAL4G MUTATED 0 8 5 1
PPIAL4G WILD-TYPE 25 104 79 48
'LUZP2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S231.  Gene #24: 'LUZP2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
LUZP2 MUTATED 11 7 9
LUZP2 WILD-TYPE 93 69 90
'LUZP2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0953 (Fisher's exact test), Q value = 1

Table S232.  Gene #24: 'LUZP2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
LUZP2 MUTATED 5 15 7
LUZP2 WILD-TYPE 66 85 101
'LUZP2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S233.  Gene #24: 'LUZP2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
LUZP2 MUTATED 4 6 3 3
LUZP2 WILD-TYPE 43 51 24 35
'LUZP2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S234.  Gene #24: 'LUZP2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
LUZP2 MUTATED 4 9 3
LUZP2 WILD-TYPE 63 50 40
'LUZP2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S235.  Gene #24: 'LUZP2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
LUZP2 MUTATED 8 4 15
LUZP2 WILD-TYPE 85 75 92
'LUZP2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S236.  Gene #24: 'LUZP2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
LUZP2 MUTATED 5 13 9
LUZP2 WILD-TYPE 68 109 75
'LUZP2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S237.  Gene #24: 'LUZP2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
LUZP2 MUTATED 3 12 11
LUZP2 WILD-TYPE 65 105 74
'LUZP2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S238.  Gene #24: 'LUZP2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
LUZP2 MUTATED 1 0 10 15
LUZP2 WILD-TYPE 28 28 60 128
'LUZP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S239.  Gene #24: 'LUZP2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
LUZP2 MUTATED 5 11 10
LUZP2 WILD-TYPE 83 91 70
'LUZP2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.751 (Fisher's exact test), Q value = 1

Table S240.  Gene #24: 'LUZP2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
LUZP2 MUTATED 1 11 10 4
LUZP2 WILD-TYPE 24 101 74 45
'FAM113B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S241.  Gene #25: 'FAM113B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
FAM113B MUTATED 9 7 12
FAM113B WILD-TYPE 95 69 87
'FAM113B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S242.  Gene #25: 'FAM113B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
FAM113B MUTATED 6 8 14
FAM113B WILD-TYPE 65 92 94
'FAM113B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.111 (Fisher's exact test), Q value = 1

Table S243.  Gene #25: 'FAM113B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
FAM113B MUTATED 2 10 3 2
FAM113B WILD-TYPE 45 47 24 36
'FAM113B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S244.  Gene #25: 'FAM113B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
FAM113B MUTATED 7 8 2
FAM113B WILD-TYPE 60 51 41
'FAM113B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.59 (Fisher's exact test), Q value = 1

Table S245.  Gene #25: 'FAM113B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
FAM113B MUTATED 7 9 12
FAM113B WILD-TYPE 86 70 95
'FAM113B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S246.  Gene #25: 'FAM113B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
FAM113B MUTATED 5 17 6
FAM113B WILD-TYPE 68 105 78
'FAM113B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S247.  Gene #25: 'FAM113B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
FAM113B MUTATED 8 14 4
FAM113B WILD-TYPE 60 103 81
'FAM113B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0992 (Fisher's exact test), Q value = 1

Table S248.  Gene #25: 'FAM113B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
FAM113B MUTATED 1 0 6 19
FAM113B WILD-TYPE 28 28 64 124
'FAM113B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S249.  Gene #25: 'FAM113B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
FAM113B MUTATED 8 14 4
FAM113B WILD-TYPE 80 88 76
'FAM113B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0937 (Fisher's exact test), Q value = 1

Table S250.  Gene #25: 'FAM113B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
FAM113B MUTATED 1 17 6 2
FAM113B WILD-TYPE 24 95 78 47
'IDH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S251.  Gene #26: 'IDH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
IDH1 MUTATED 6 3 7
IDH1 WILD-TYPE 98 73 92
'IDH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S252.  Gene #26: 'IDH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
IDH1 MUTATED 2 9 5
IDH1 WILD-TYPE 69 91 103
'IDH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.12 (Fisher's exact test), Q value = 1

Table S253.  Gene #26: 'IDH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
IDH1 MUTATED 0 4 1 4
IDH1 WILD-TYPE 47 53 26 34
'IDH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0971 (Fisher's exact test), Q value = 1

Table S254.  Gene #26: 'IDH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
IDH1 MUTATED 1 6 2
IDH1 WILD-TYPE 66 53 41
'IDH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.165 (Fisher's exact test), Q value = 1

Table S255.  Gene #26: 'IDH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
IDH1 MUTATED 2 6 8
IDH1 WILD-TYPE 91 73 99
'IDH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S256.  Gene #26: 'IDH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
IDH1 MUTATED 2 7 7
IDH1 WILD-TYPE 71 115 77
'IDH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.162 (Fisher's exact test), Q value = 1

Table S257.  Gene #26: 'IDH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
IDH1 MUTATED 3 10 2
IDH1 WILD-TYPE 65 107 83
'IDH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.168 (Fisher's exact test), Q value = 1

Table S258.  Gene #26: 'IDH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
IDH1 MUTATED 3 1 1 10
IDH1 WILD-TYPE 26 27 69 133
'IDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S259.  Gene #26: 'IDH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
IDH1 MUTATED 3 9 3
IDH1 WILD-TYPE 85 93 77
'IDH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S260.  Gene #26: 'IDH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
IDH1 MUTATED 3 8 2 2
IDH1 WILD-TYPE 22 104 82 47
'OR51S1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S261.  Gene #27: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
OR51S1 MUTATED 8 8 14
OR51S1 WILD-TYPE 96 68 85
'OR51S1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.783 (Fisher's exact test), Q value = 1

Table S262.  Gene #27: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
OR51S1 MUTATED 6 12 12
OR51S1 WILD-TYPE 65 88 96
'OR51S1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.517 (Fisher's exact test), Q value = 1

Table S263.  Gene #27: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
OR51S1 MUTATED 3 9 3 4
OR51S1 WILD-TYPE 44 48 24 34
'OR51S1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S264.  Gene #27: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
OR51S1 MUTATED 11 6 2
OR51S1 WILD-TYPE 56 53 41
'OR51S1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S265.  Gene #27: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
OR51S1 MUTATED 10 10 10
OR51S1 WILD-TYPE 83 69 97
'OR51S1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S266.  Gene #27: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
OR51S1 MUTATED 7 15 8
OR51S1 WILD-TYPE 66 107 76
'OR51S1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S267.  Gene #27: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
OR51S1 MUTATED 6 15 8
OR51S1 WILD-TYPE 62 102 77
'OR51S1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S268.  Gene #27: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
OR51S1 MUTATED 1 1 8 19
OR51S1 WILD-TYPE 28 27 62 124
'OR51S1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S269.  Gene #27: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
OR51S1 MUTATED 8 15 6
OR51S1 WILD-TYPE 80 87 74
'OR51S1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0358 (Fisher's exact test), Q value = 1

Table S270.  Gene #27: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
OR51S1 MUTATED 1 18 9 1
OR51S1 WILD-TYPE 24 94 75 48

Figure S19.  Get High-res Image Gene #27: 'OR51S1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'CYP4X1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S271.  Gene #28: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
CYP4X1 MUTATED 8 3 10
CYP4X1 WILD-TYPE 96 73 89
'CYP4X1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.461 (Fisher's exact test), Q value = 1

Table S272.  Gene #28: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
CYP4X1 MUTATED 3 8 10
CYP4X1 WILD-TYPE 68 92 98
'CYP4X1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S273.  Gene #28: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
CYP4X1 MUTATED 3 5 2 4
CYP4X1 WILD-TYPE 44 52 25 34
'CYP4X1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S274.  Gene #28: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
CYP4X1 MUTATED 3 7 4
CYP4X1 WILD-TYPE 64 52 39
'CYP4X1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S275.  Gene #28: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
CYP4X1 MUTATED 5 4 12
CYP4X1 WILD-TYPE 88 75 95
'CYP4X1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.908 (Fisher's exact test), Q value = 1

Table S276.  Gene #28: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
CYP4X1 MUTATED 5 9 7
CYP4X1 WILD-TYPE 68 113 77
'CYP4X1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.681 (Fisher's exact test), Q value = 1

Table S277.  Gene #28: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
CYP4X1 MUTATED 5 11 5
CYP4X1 WILD-TYPE 63 106 80
'CYP4X1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.405 (Fisher's exact test), Q value = 1

Table S278.  Gene #28: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
CYP4X1 MUTATED 3 0 6 12
CYP4X1 WILD-TYPE 26 28 64 131
'CYP4X1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S279.  Gene #28: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
CYP4X1 MUTATED 5 11 5
CYP4X1 WILD-TYPE 83 91 75
'CYP4X1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S280.  Gene #28: 'CYP4X1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
CYP4X1 MUTATED 3 10 6 2
CYP4X1 WILD-TYPE 22 102 78 47
'ARMC4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.273 (Fisher's exact test), Q value = 1

Table S281.  Gene #29: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
ARMC4 MUTATED 23 10 21
ARMC4 WILD-TYPE 81 66 78
'ARMC4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.5 (Fisher's exact test), Q value = 1

Table S282.  Gene #29: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
ARMC4 MUTATED 13 23 18
ARMC4 WILD-TYPE 58 77 90
'ARMC4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0932 (Fisher's exact test), Q value = 1

Table S283.  Gene #29: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
ARMC4 MUTATED 8 9 2 12
ARMC4 WILD-TYPE 39 48 25 26
'ARMC4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S284.  Gene #29: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
ARMC4 MUTATED 13 13 5
ARMC4 WILD-TYPE 54 46 38
'ARMC4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S285.  Gene #29: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
ARMC4 MUTATED 13 21 20
ARMC4 WILD-TYPE 80 58 87
'ARMC4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S286.  Gene #29: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
ARMC4 MUTATED 10 29 15
ARMC4 WILD-TYPE 63 93 69
'ARMC4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S287.  Gene #29: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
ARMC4 MUTATED 12 25 15
ARMC4 WILD-TYPE 56 92 70
'ARMC4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S288.  Gene #29: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
ARMC4 MUTATED 6 2 12 32
ARMC4 WILD-TYPE 23 26 58 111
'ARMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S289.  Gene #29: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
ARMC4 MUTATED 15 25 12
ARMC4 WILD-TYPE 73 77 68
'ARMC4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S290.  Gene #29: 'ARMC4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
ARMC4 MUTATED 5 28 12 7
ARMC4 WILD-TYPE 20 84 72 42
'TUBAL3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.084 (Fisher's exact test), Q value = 1

Table S291.  Gene #30: 'TUBAL3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
TUBAL3 MUTATED 6 0 4
TUBAL3 WILD-TYPE 98 76 95
'TUBAL3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S292.  Gene #30: 'TUBAL3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
TUBAL3 MUTATED 2 2 6
TUBAL3 WILD-TYPE 69 98 102
'TUBAL3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S293.  Gene #30: 'TUBAL3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
TUBAL3 MUTATED 3 1 1 3
TUBAL3 WILD-TYPE 44 56 26 35
'TUBAL3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S294.  Gene #30: 'TUBAL3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
TUBAL3 MUTATED 1 4 3
TUBAL3 WILD-TYPE 66 55 40
'TUBAL3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S295.  Gene #30: 'TUBAL3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
TUBAL3 MUTATED 3 4 3
TUBAL3 WILD-TYPE 90 75 104
'TUBAL3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S296.  Gene #30: 'TUBAL3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
TUBAL3 MUTATED 2 6 2
TUBAL3 WILD-TYPE 71 116 82
'TUBAL3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.711 (Fisher's exact test), Q value = 1

Table S297.  Gene #30: 'TUBAL3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
TUBAL3 MUTATED 3 3 4
TUBAL3 WILD-TYPE 65 114 81
'TUBAL3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.327 (Fisher's exact test), Q value = 1

Table S298.  Gene #30: 'TUBAL3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
TUBAL3 MUTATED 0 2 4 4
TUBAL3 WILD-TYPE 29 26 66 139
'TUBAL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S299.  Gene #30: 'TUBAL3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
TUBAL3 MUTATED 4 4 2
TUBAL3 WILD-TYPE 84 98 78
'TUBAL3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.869 (Fisher's exact test), Q value = 1

Table S300.  Gene #30: 'TUBAL3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
TUBAL3 MUTATED 0 4 4 2
TUBAL3 WILD-TYPE 25 108 80 47
'NMNAT3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S301.  Gene #31: 'NMNAT3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
NMNAT3 MUTATED 6 3 2
NMNAT3 WILD-TYPE 98 73 97
'NMNAT3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S302.  Gene #31: 'NMNAT3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
NMNAT3 MUTATED 1 7 3
NMNAT3 WILD-TYPE 70 93 105
'NMNAT3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S303.  Gene #31: 'NMNAT3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
NMNAT3 MUTATED 2 2 0 2
NMNAT3 WILD-TYPE 45 55 27 36
'NMNAT3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S304.  Gene #31: 'NMNAT3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
NMNAT3 MUTATED 3 2 1
NMNAT3 WILD-TYPE 64 57 42
'NMNAT3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S305.  Gene #31: 'NMNAT3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
NMNAT3 MUTATED 4 1 6
NMNAT3 WILD-TYPE 89 78 101
'NMNAT3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S306.  Gene #31: 'NMNAT3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
NMNAT3 MUTATED 3 6 2
NMNAT3 WILD-TYPE 70 116 82
'NMNAT3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S307.  Gene #31: 'NMNAT3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
NMNAT3 MUTATED 3 4 4
NMNAT3 WILD-TYPE 65 113 81
'NMNAT3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S308.  Gene #31: 'NMNAT3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
NMNAT3 MUTATED 2 0 5 4
NMNAT3 WILD-TYPE 27 28 65 139
'NMNAT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S309.  Gene #31: 'NMNAT3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
NMNAT3 MUTATED 3 4 4
NMNAT3 WILD-TYPE 85 98 76
'NMNAT3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S310.  Gene #31: 'NMNAT3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
NMNAT3 MUTATED 2 4 5 0
NMNAT3 WILD-TYPE 23 108 79 49
'AOAH MUTATION STATUS' versus 'CN_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S311.  Gene #32: 'AOAH MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
AOAH MUTATED 13 5 9
AOAH WILD-TYPE 91 71 90
'AOAH MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S312.  Gene #32: 'AOAH MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
AOAH MUTATED 9 7 11
AOAH WILD-TYPE 62 93 97
'AOAH MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S313.  Gene #32: 'AOAH MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
AOAH MUTATED 3 6 1 6
AOAH WILD-TYPE 44 51 26 32
'AOAH MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S314.  Gene #32: 'AOAH MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
AOAH MUTATED 5 7 4
AOAH WILD-TYPE 62 52 39
'AOAH MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S315.  Gene #32: 'AOAH MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
AOAH MUTATED 6 8 13
AOAH WILD-TYPE 87 71 94
'AOAH MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S316.  Gene #32: 'AOAH MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
AOAH MUTATED 4 11 12
AOAH WILD-TYPE 69 111 72
'AOAH MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.974 (Fisher's exact test), Q value = 1

Table S317.  Gene #32: 'AOAH MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
AOAH MUTATED 6 12 8
AOAH WILD-TYPE 62 105 77
'AOAH MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.31 (Fisher's exact test), Q value = 1

Table S318.  Gene #32: 'AOAH MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
AOAH MUTATED 1 3 4 18
AOAH WILD-TYPE 28 25 66 125
'AOAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.24 (Fisher's exact test), Q value = 1

Table S319.  Gene #32: 'AOAH MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
AOAH MUTATED 6 14 6
AOAH WILD-TYPE 82 88 74
'AOAH MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.237 (Fisher's exact test), Q value = 1

Table S320.  Gene #32: 'AOAH MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
AOAH MUTATED 1 16 6 3
AOAH WILD-TYPE 24 96 78 46
'THEMIS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S321.  Gene #33: 'THEMIS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
THEMIS MUTATED 14 6 14
THEMIS WILD-TYPE 90 70 85
'THEMIS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0464 (Fisher's exact test), Q value = 1

Table S322.  Gene #33: 'THEMIS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
THEMIS MUTATED 6 19 9
THEMIS WILD-TYPE 65 81 99

Figure S20.  Get High-res Image Gene #33: 'THEMIS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'THEMIS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.506 (Fisher's exact test), Q value = 1

Table S323.  Gene #33: 'THEMIS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
THEMIS MUTATED 6 7 1 6
THEMIS WILD-TYPE 41 50 26 32
'THEMIS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.853 (Fisher's exact test), Q value = 1

Table S324.  Gene #33: 'THEMIS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
THEMIS MUTATED 9 7 4
THEMIS WILD-TYPE 58 52 39
'THEMIS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.658 (Fisher's exact test), Q value = 1

Table S325.  Gene #33: 'THEMIS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
THEMIS MUTATED 9 11 14
THEMIS WILD-TYPE 84 68 93
'THEMIS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.408 (Fisher's exact test), Q value = 1

Table S326.  Gene #33: 'THEMIS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
THEMIS MUTATED 6 18 10
THEMIS WILD-TYPE 67 104 74
'THEMIS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.439 (Fisher's exact test), Q value = 1

Table S327.  Gene #33: 'THEMIS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
THEMIS MUTATED 5 16 10
THEMIS WILD-TYPE 63 101 75
'THEMIS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S328.  Gene #33: 'THEMIS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
THEMIS MUTATED 1 1 10 19
THEMIS WILD-TYPE 28 27 60 124
'THEMIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S329.  Gene #33: 'THEMIS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
THEMIS MUTATED 9 14 8
THEMIS WILD-TYPE 79 88 72
'THEMIS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.107 (Fisher's exact test), Q value = 1

Table S330.  Gene #33: 'THEMIS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
THEMIS MUTATED 1 18 10 2
THEMIS WILD-TYPE 24 94 74 47
'CYP4Z1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S331.  Gene #34: 'CYP4Z1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
CYP4Z1 MUTATED 13 6 8
CYP4Z1 WILD-TYPE 91 70 91
'CYP4Z1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S332.  Gene #34: 'CYP4Z1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
CYP4Z1 MUTATED 8 13 6
CYP4Z1 WILD-TYPE 63 87 102
'CYP4Z1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.025 (Fisher's exact test), Q value = 1

Table S333.  Gene #34: 'CYP4Z1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
CYP4Z1 MUTATED 1 10 1 6
CYP4Z1 WILD-TYPE 46 47 26 32

Figure S21.  Get High-res Image Gene #34: 'CYP4Z1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CYP4Z1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S334.  Gene #34: 'CYP4Z1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
CYP4Z1 MUTATED 10 4 4
CYP4Z1 WILD-TYPE 57 55 39
'CYP4Z1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.645 (Fisher's exact test), Q value = 1

Table S335.  Gene #34: 'CYP4Z1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
CYP4Z1 MUTATED 11 6 10
CYP4Z1 WILD-TYPE 82 73 97
'CYP4Z1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S336.  Gene #34: 'CYP4Z1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
CYP4Z1 MUTATED 9 13 5
CYP4Z1 WILD-TYPE 64 109 79
'CYP4Z1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S337.  Gene #34: 'CYP4Z1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
CYP4Z1 MUTATED 6 13 6
CYP4Z1 WILD-TYPE 62 104 79
'CYP4Z1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.868 (Fisher's exact test), Q value = 1

Table S338.  Gene #34: 'CYP4Z1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
CYP4Z1 MUTATED 3 3 5 14
CYP4Z1 WILD-TYPE 26 25 65 129
'CYP4Z1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S339.  Gene #34: 'CYP4Z1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
CYP4Z1 MUTATED 6 12 7
CYP4Z1 WILD-TYPE 82 90 73
'CYP4Z1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.58 (Fisher's exact test), Q value = 1

Table S340.  Gene #34: 'CYP4Z1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
CYP4Z1 MUTATED 3 12 5 5
CYP4Z1 WILD-TYPE 22 100 79 44
'CTAGE6P MUTATION STATUS' versus 'CN_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S341.  Gene #35: 'CTAGE6P MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
CTAGE6P MUTATED 2 2 3
CTAGE6P WILD-TYPE 102 74 96
'CTAGE6P MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.896 (Fisher's exact test), Q value = 1

Table S342.  Gene #35: 'CTAGE6P MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
CTAGE6P MUTATED 1 3 3
CTAGE6P WILD-TYPE 70 97 105
'CTAGE6P MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0144 (Fisher's exact test), Q value = 1

Table S343.  Gene #35: 'CTAGE6P MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
CTAGE6P MUTATED 0 0 0 3
CTAGE6P WILD-TYPE 47 57 27 35

Figure S22.  Get High-res Image Gene #35: 'CTAGE6P MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CTAGE6P MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0568 (Fisher's exact test), Q value = 1

Table S344.  Gene #35: 'CTAGE6P MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
CTAGE6P MUTATED 0 3 0
CTAGE6P WILD-TYPE 67 56 43
'CTAGE6P MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S345.  Gene #35: 'CTAGE6P MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
CTAGE6P MUTATED 1 4 2
CTAGE6P WILD-TYPE 92 75 105
'CTAGE6P MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S346.  Gene #35: 'CTAGE6P MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
CTAGE6P MUTATED 1 5 1
CTAGE6P WILD-TYPE 72 117 83
'CTAGE6P MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S347.  Gene #35: 'CTAGE6P MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
CTAGE6P MUTATED 2 2 2
CTAGE6P WILD-TYPE 66 115 83
'CTAGE6P MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.22 (Fisher's exact test), Q value = 1

Table S348.  Gene #35: 'CTAGE6P MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
CTAGE6P MUTATED 0 0 4 2
CTAGE6P WILD-TYPE 29 28 66 141
'CTAGE6P MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S349.  Gene #35: 'CTAGE6P MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
CTAGE6P MUTATED 2 2 2
CTAGE6P WILD-TYPE 86 100 78
'CTAGE6P MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S350.  Gene #35: 'CTAGE6P MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
CTAGE6P MUTATED 0 2 4 0
CTAGE6P WILD-TYPE 25 110 80 49
'TC2N MUTATION STATUS' versus 'CN_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S351.  Gene #36: 'TC2N MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
TC2N MUTATED 7 5 8
TC2N WILD-TYPE 97 71 91
'TC2N MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S352.  Gene #36: 'TC2N MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
TC2N MUTATED 5 10 5
TC2N WILD-TYPE 66 90 103
'TC2N MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.614 (Fisher's exact test), Q value = 1

Table S353.  Gene #36: 'TC2N MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
TC2N MUTATED 2 5 1 4
TC2N WILD-TYPE 45 52 26 34
'TC2N MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S354.  Gene #36: 'TC2N MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
TC2N MUTATED 5 6 1
TC2N WILD-TYPE 62 53 42
'TC2N MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S355.  Gene #36: 'TC2N MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
TC2N MUTATED 7 4 9
TC2N WILD-TYPE 86 75 98
'TC2N MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S356.  Gene #36: 'TC2N MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
TC2N MUTATED 5 10 5
TC2N WILD-TYPE 68 112 79
'TC2N MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S357.  Gene #36: 'TC2N MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
TC2N MUTATED 5 11 4
TC2N WILD-TYPE 63 106 81
'TC2N MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S358.  Gene #36: 'TC2N MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
TC2N MUTATED 2 3 4 11
TC2N WILD-TYPE 27 25 66 132
'TC2N MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S359.  Gene #36: 'TC2N MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
TC2N MUTATED 5 11 4
TC2N WILD-TYPE 83 91 76
'TC2N MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.845 (Fisher's exact test), Q value = 1

Table S360.  Gene #36: 'TC2N MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
TC2N MUTATED 2 10 5 3
TC2N WILD-TYPE 23 102 79 46
'MPP7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S361.  Gene #37: 'MPP7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
MPP7 MUTATED 12 5 13
MPP7 WILD-TYPE 92 71 86
'MPP7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 1

Table S362.  Gene #37: 'MPP7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
MPP7 MUTATED 5 15 10
MPP7 WILD-TYPE 66 85 98
'MPP7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S363.  Gene #37: 'MPP7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
MPP7 MUTATED 4 10 1 5
MPP7 WILD-TYPE 43 47 26 33
'MPP7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S364.  Gene #37: 'MPP7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
MPP7 MUTATED 6 10 4
MPP7 WILD-TYPE 61 49 39
'MPP7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.359 (Fisher's exact test), Q value = 1

Table S365.  Gene #37: 'MPP7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
MPP7 MUTATED 7 8 15
MPP7 WILD-TYPE 86 71 92
'MPP7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S366.  Gene #37: 'MPP7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
MPP7 MUTATED 5 14 11
MPP7 WILD-TYPE 68 108 73
'MPP7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S367.  Gene #37: 'MPP7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
MPP7 MUTATED 8 14 7
MPP7 WILD-TYPE 60 103 78
'MPP7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.518 (Fisher's exact test), Q value = 1

Table S368.  Gene #37: 'MPP7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
MPP7 MUTATED 3 1 10 15
MPP7 WILD-TYPE 26 27 60 128
'MPP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.697 (Fisher's exact test), Q value = 1

Table S369.  Gene #37: 'MPP7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
MPP7 MUTATED 8 13 8
MPP7 WILD-TYPE 80 89 72
'MPP7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.708 (Fisher's exact test), Q value = 1

Table S370.  Gene #37: 'MPP7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
MPP7 MUTATED 3 13 10 3
MPP7 WILD-TYPE 22 99 74 46
'C1QTNF9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S371.  Gene #38: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
C1QTNF9 MUTATED 6 2 8
C1QTNF9 WILD-TYPE 98 74 91
'C1QTNF9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.431 (Fisher's exact test), Q value = 1

Table S372.  Gene #38: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
C1QTNF9 MUTATED 2 6 8
C1QTNF9 WILD-TYPE 69 94 100
'C1QTNF9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S373.  Gene #38: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
C1QTNF9 MUTATED 2 5 2 1
C1QTNF9 WILD-TYPE 45 52 25 37
'C1QTNF9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S374.  Gene #38: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
C1QTNF9 MUTATED 3 4 3
C1QTNF9 WILD-TYPE 64 55 40
'C1QTNF9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S375.  Gene #38: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
C1QTNF9 MUTATED 5 4 7
C1QTNF9 WILD-TYPE 88 75 100
'C1QTNF9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.805 (Fisher's exact test), Q value = 1

Table S376.  Gene #38: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
C1QTNF9 MUTATED 3 8 5
C1QTNF9 WILD-TYPE 70 114 79
'C1QTNF9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S377.  Gene #38: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
C1QTNF9 MUTATED 3 4 8
C1QTNF9 WILD-TYPE 65 113 77
'C1QTNF9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S378.  Gene #38: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
C1QTNF9 MUTATED 0 2 6 7
C1QTNF9 WILD-TYPE 29 26 64 136
'C1QTNF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S379.  Gene #38: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
C1QTNF9 MUTATED 5 4 6
C1QTNF9 WILD-TYPE 83 98 74
'C1QTNF9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S380.  Gene #38: 'C1QTNF9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
C1QTNF9 MUTATED 0 5 9 1
C1QTNF9 WILD-TYPE 25 107 75 48
'CAPZA3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S381.  Gene #39: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
CAPZA3 MUTATED 8 7 11
CAPZA3 WILD-TYPE 96 69 88
'CAPZA3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S382.  Gene #39: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
CAPZA3 MUTATED 4 13 9
CAPZA3 WILD-TYPE 67 87 99
'CAPZA3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S383.  Gene #39: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
CAPZA3 MUTATED 2 4 2 4
CAPZA3 WILD-TYPE 45 53 25 34
'CAPZA3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S384.  Gene #39: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
CAPZA3 MUTATED 6 3 3
CAPZA3 WILD-TYPE 61 56 40
'CAPZA3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S385.  Gene #39: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
CAPZA3 MUTATED 8 7 11
CAPZA3 WILD-TYPE 85 72 96
'CAPZA3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S386.  Gene #39: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
CAPZA3 MUTATED 6 15 5
CAPZA3 WILD-TYPE 67 107 79
'CAPZA3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.886 (Fisher's exact test), Q value = 1

Table S387.  Gene #39: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
CAPZA3 MUTATED 7 10 7
CAPZA3 WILD-TYPE 61 107 78
'CAPZA3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S388.  Gene #39: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
CAPZA3 MUTATED 3 2 5 14
CAPZA3 WILD-TYPE 26 26 65 129
'CAPZA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S389.  Gene #39: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
CAPZA3 MUTATED 10 8 6
CAPZA3 WILD-TYPE 78 94 74
'CAPZA3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S390.  Gene #39: 'CAPZA3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
CAPZA3 MUTATED 3 12 5 4
CAPZA3 WILD-TYPE 22 100 79 45
'ITGA4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.32 (Fisher's exact test), Q value = 1

Table S391.  Gene #40: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
ITGA4 MUTATED 11 8 17
ITGA4 WILD-TYPE 93 68 82
'ITGA4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0132 (Fisher's exact test), Q value = 1

Table S392.  Gene #40: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
ITGA4 MUTATED 3 19 14
ITGA4 WILD-TYPE 68 81 94

Figure S23.  Get High-res Image Gene #40: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ITGA4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S393.  Gene #40: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
ITGA4 MUTATED 7 6 2 6
ITGA4 WILD-TYPE 40 51 25 32
'ITGA4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.946 (Fisher's exact test), Q value = 1

Table S394.  Gene #40: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
ITGA4 MUTATED 8 8 5
ITGA4 WILD-TYPE 59 51 38
'ITGA4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S395.  Gene #40: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
ITGA4 MUTATED 10 15 11
ITGA4 WILD-TYPE 83 64 96
'ITGA4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S396.  Gene #40: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
ITGA4 MUTATED 7 19 10
ITGA4 WILD-TYPE 66 103 74
'ITGA4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S397.  Gene #40: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
ITGA4 MUTATED 11 11 12
ITGA4 WILD-TYPE 57 106 73
'ITGA4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0776 (Fisher's exact test), Q value = 1

Table S398.  Gene #40: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
ITGA4 MUTATED 7 6 7 14
ITGA4 WILD-TYPE 22 22 63 129
'ITGA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S399.  Gene #40: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
ITGA4 MUTATED 11 10 13
ITGA4 WILD-TYPE 77 92 67
'ITGA4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S400.  Gene #40: 'ITGA4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
ITGA4 MUTATED 5 14 10 5
ITGA4 WILD-TYPE 20 98 74 44
'ZNF99 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0707 (Fisher's exact test), Q value = 1

Table S401.  Gene #41: 'ZNF99 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
ZNF99 MUTATED 15 5 18
ZNF99 WILD-TYPE 89 71 81
'ZNF99 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S402.  Gene #41: 'ZNF99 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
ZNF99 MUTATED 10 15 13
ZNF99 WILD-TYPE 61 85 95
'ZNF99 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S403.  Gene #41: 'ZNF99 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
ZNF99 MUTATED 7 6 5 5
ZNF99 WILD-TYPE 40 51 22 33
'ZNF99 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.363 (Fisher's exact test), Q value = 1

Table S404.  Gene #41: 'ZNF99 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
ZNF99 MUTATED 11 5 7
ZNF99 WILD-TYPE 56 54 36
'ZNF99 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S405.  Gene #41: 'ZNF99 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
ZNF99 MUTATED 11 9 18
ZNF99 WILD-TYPE 82 70 89
'ZNF99 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S406.  Gene #41: 'ZNF99 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
ZNF99 MUTATED 12 12 14
ZNF99 WILD-TYPE 61 110 70
'ZNF99 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S407.  Gene #41: 'ZNF99 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
ZNF99 MUTATED 12 16 9
ZNF99 WILD-TYPE 56 101 76
'ZNF99 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S408.  Gene #41: 'ZNF99 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
ZNF99 MUTATED 2 3 9 23
ZNF99 WILD-TYPE 27 25 61 120
'ZNF99 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.562 (Fisher's exact test), Q value = 1

Table S409.  Gene #41: 'ZNF99 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
ZNF99 MUTATED 11 17 9
ZNF99 WILD-TYPE 77 85 71
'ZNF99 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0565 (Fisher's exact test), Q value = 1

Table S410.  Gene #41: 'ZNF99 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
ZNF99 MUTATED 2 23 9 3
ZNF99 WILD-TYPE 23 89 75 46
'GPR141 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.695 (Fisher's exact test), Q value = 1

Table S411.  Gene #42: 'GPR141 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
GPR141 MUTATED 6 3 7
GPR141 WILD-TYPE 98 73 92
'GPR141 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S412.  Gene #42: 'GPR141 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
GPR141 MUTATED 4 4 8
GPR141 WILD-TYPE 67 96 100
'GPR141 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0362 (Fisher's exact test), Q value = 1

Table S413.  Gene #42: 'GPR141 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
GPR141 MUTATED 7 2 0 1
GPR141 WILD-TYPE 40 55 27 37

Figure S24.  Get High-res Image Gene #42: 'GPR141 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'GPR141 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.114 (Fisher's exact test), Q value = 1

Table S414.  Gene #42: 'GPR141 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
GPR141 MUTATED 4 1 5
GPR141 WILD-TYPE 63 58 38
'GPR141 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S415.  Gene #42: 'GPR141 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
GPR141 MUTATED 4 6 6
GPR141 WILD-TYPE 89 73 101
'GPR141 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S416.  Gene #42: 'GPR141 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
GPR141 MUTATED 5 7 4
GPR141 WILD-TYPE 68 115 80
'GPR141 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S417.  Gene #42: 'GPR141 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
GPR141 MUTATED 3 5 8
GPR141 WILD-TYPE 65 112 77
'GPR141 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S418.  Gene #42: 'GPR141 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
GPR141 MUTATED 1 3 5 7
GPR141 WILD-TYPE 28 25 65 136
'GPR141 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0876 (Fisher's exact test), Q value = 1

Table S419.  Gene #42: 'GPR141 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
GPR141 MUTATED 3 4 9
GPR141 WILD-TYPE 85 98 71
'GPR141 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.939 (Fisher's exact test), Q value = 1

Table S420.  Gene #42: 'GPR141 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
GPR141 MUTATED 1 6 6 3
GPR141 WILD-TYPE 24 106 78 46
'PROL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0199 (Fisher's exact test), Q value = 1

Table S421.  Gene #43: 'PROL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
PROL1 MUTATED 11 1 11
PROL1 WILD-TYPE 93 75 88

Figure S25.  Get High-res Image Gene #43: 'PROL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'PROL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S422.  Gene #43: 'PROL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
PROL1 MUTATED 5 6 12
PROL1 WILD-TYPE 66 94 96
'PROL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S423.  Gene #43: 'PROL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
PROL1 MUTATED 4 5 2 6
PROL1 WILD-TYPE 43 52 25 32
'PROL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S424.  Gene #43: 'PROL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
PROL1 MUTATED 7 8 2
PROL1 WILD-TYPE 60 51 41
'PROL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.654 (Fisher's exact test), Q value = 1

Table S425.  Gene #43: 'PROL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
PROL1 MUTATED 6 8 9
PROL1 WILD-TYPE 87 71 98
'PROL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S426.  Gene #43: 'PROL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
PROL1 MUTATED 4 13 6
PROL1 WILD-TYPE 69 109 78
'PROL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S427.  Gene #43: 'PROL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
PROL1 MUTATED 9 6 6
PROL1 WILD-TYPE 59 111 79
'PROL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S428.  Gene #43: 'PROL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
PROL1 MUTATED 4 0 7 10
PROL1 WILD-TYPE 25 28 63 133
'PROL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S429.  Gene #43: 'PROL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
PROL1 MUTATED 9 8 4
PROL1 WILD-TYPE 79 94 76
'PROL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S430.  Gene #43: 'PROL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
PROL1 MUTATED 3 9 7 2
PROL1 WILD-TYPE 22 103 77 47
'EMG1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S431.  Gene #44: 'EMG1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
EMG1 MUTATED 4 1 4
EMG1 WILD-TYPE 100 75 95
'EMG1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S432.  Gene #44: 'EMG1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
EMG1 MUTATED 2 4 3
EMG1 WILD-TYPE 69 96 105
'EMG1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S433.  Gene #44: 'EMG1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
EMG1 MUTATED 2 1 1 0
EMG1 WILD-TYPE 45 56 26 38
'EMG1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S434.  Gene #44: 'EMG1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
EMG1 MUTATED 0 2 2
EMG1 WILD-TYPE 67 57 41
'EMG1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S435.  Gene #44: 'EMG1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
EMG1 MUTATED 4 2 3
EMG1 WILD-TYPE 89 77 104
'EMG1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S436.  Gene #44: 'EMG1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
EMG1 MUTATED 4 2 3
EMG1 WILD-TYPE 69 120 81
'EMG1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S437.  Gene #44: 'EMG1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
EMG1 MUTATED 3 2 4
EMG1 WILD-TYPE 65 115 81
'EMG1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S438.  Gene #44: 'EMG1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
EMG1 MUTATED 1 1 2 5
EMG1 WILD-TYPE 28 27 68 138
'EMG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S439.  Gene #44: 'EMG1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
EMG1 MUTATED 3 3 3
EMG1 WILD-TYPE 85 99 77
'EMG1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S440.  Gene #44: 'EMG1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
EMG1 MUTATED 1 2 3 3
EMG1 WILD-TYPE 24 110 81 46
'RQCD1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0623 (Fisher's exact test), Q value = 1

Table S441.  Gene #45: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
RQCD1 MUTATED 7 1 1
RQCD1 WILD-TYPE 97 75 98
'RQCD1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S442.  Gene #45: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
RQCD1 MUTATED 3 5 1
RQCD1 WILD-TYPE 68 95 107
'RQCD1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0901 (Fisher's exact test), Q value = 1

Table S443.  Gene #45: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
RQCD1 MUTATED 0 3 2 0
RQCD1 WILD-TYPE 47 54 25 38
'RQCD1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S444.  Gene #45: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
RQCD1 MUTATED 2 2 1
RQCD1 WILD-TYPE 65 57 42
'RQCD1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S445.  Gene #45: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
RQCD1 MUTATED 2 2 5
RQCD1 WILD-TYPE 91 77 102
'RQCD1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S446.  Gene #45: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
RQCD1 MUTATED 2 4 3
RQCD1 WILD-TYPE 71 118 81
'RQCD1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S447.  Gene #45: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
RQCD1 MUTATED 1 5 3
RQCD1 WILD-TYPE 67 112 82
'RQCD1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 1

Table S448.  Gene #45: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
RQCD1 MUTATED 1 2 2 4
RQCD1 WILD-TYPE 28 26 68 139
'RQCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S449.  Gene #45: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
RQCD1 MUTATED 4 4 1
RQCD1 WILD-TYPE 84 98 79
'RQCD1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S450.  Gene #45: 'RQCD1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
RQCD1 MUTATED 1 4 2 2
RQCD1 WILD-TYPE 24 108 82 47
'TMPRSS11B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S451.  Gene #46: 'TMPRSS11B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
TMPRSS11B MUTATED 6 4 12
TMPRSS11B WILD-TYPE 98 72 87
'TMPRSS11B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.257 (Fisher's exact test), Q value = 1

Table S452.  Gene #46: 'TMPRSS11B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
TMPRSS11B MUTATED 3 7 12
TMPRSS11B WILD-TYPE 68 93 96
'TMPRSS11B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.109 (Fisher's exact test), Q value = 1

Table S453.  Gene #46: 'TMPRSS11B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
TMPRSS11B MUTATED 2 4 4 7
TMPRSS11B WILD-TYPE 45 53 23 31
'TMPRSS11B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S454.  Gene #46: 'TMPRSS11B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
TMPRSS11B MUTATED 7 5 5
TMPRSS11B WILD-TYPE 60 54 38
'TMPRSS11B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S455.  Gene #46: 'TMPRSS11B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
TMPRSS11B MUTATED 6 8 8
TMPRSS11B WILD-TYPE 87 71 99
'TMPRSS11B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S456.  Gene #46: 'TMPRSS11B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
TMPRSS11B MUTATED 2 13 7
TMPRSS11B WILD-TYPE 71 109 77
'TMPRSS11B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.272 (Fisher's exact test), Q value = 1

Table S457.  Gene #46: 'TMPRSS11B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
TMPRSS11B MUTATED 8 10 4
TMPRSS11B WILD-TYPE 60 107 81
'TMPRSS11B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S458.  Gene #46: 'TMPRSS11B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
TMPRSS11B MUTATED 4 1 3 14
TMPRSS11B WILD-TYPE 25 27 67 129
'TMPRSS11B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 1

Table S459.  Gene #46: 'TMPRSS11B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
TMPRSS11B MUTATED 7 11 4
TMPRSS11B WILD-TYPE 81 91 76
'TMPRSS11B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0742 (Fisher's exact test), Q value = 1

Table S460.  Gene #46: 'TMPRSS11B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
TMPRSS11B MUTATED 3 14 3 2
TMPRSS11B WILD-TYPE 22 98 81 47
'OR4E2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.148 (Fisher's exact test), Q value = 1

Table S461.  Gene #47: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
OR4E2 MUTATED 7 4 13
OR4E2 WILD-TYPE 97 72 86
'OR4E2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S462.  Gene #47: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
OR4E2 MUTATED 5 9 10
OR4E2 WILD-TYPE 66 91 98
'OR4E2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S463.  Gene #47: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
OR4E2 MUTATED 4 5 1 4
OR4E2 WILD-TYPE 43 52 26 34
'OR4E2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S464.  Gene #47: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
OR4E2 MUTATED 7 4 3
OR4E2 WILD-TYPE 60 55 40
'OR4E2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S465.  Gene #47: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
OR4E2 MUTATED 5 8 11
OR4E2 WILD-TYPE 88 71 96
'OR4E2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S466.  Gene #47: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
OR4E2 MUTATED 4 14 6
OR4E2 WILD-TYPE 69 108 78
'OR4E2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S467.  Gene #47: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
OR4E2 MUTATED 4 11 7
OR4E2 WILD-TYPE 64 106 78
'OR4E2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S468.  Gene #47: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
OR4E2 MUTATED 2 3 5 12
OR4E2 WILD-TYPE 27 25 65 131
'OR4E2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S469.  Gene #47: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
OR4E2 MUTATED 5 10 7
OR4E2 WILD-TYPE 83 92 73
'OR4E2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S470.  Gene #47: 'OR4E2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
OR4E2 MUTATED 1 14 6 1
OR4E2 WILD-TYPE 24 98 78 48
'TCHHL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0272 (Fisher's exact test), Q value = 1

Table S471.  Gene #48: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
TCHHL1 MUTATED 18 4 17
TCHHL1 WILD-TYPE 86 72 82

Figure S26.  Get High-res Image Gene #48: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'TCHHL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S472.  Gene #48: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
TCHHL1 MUTATED 6 16 17
TCHHL1 WILD-TYPE 65 84 91
'TCHHL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0557 (Fisher's exact test), Q value = 1

Table S473.  Gene #48: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
TCHHL1 MUTATED 10 3 4 8
TCHHL1 WILD-TYPE 37 54 23 30
'TCHHL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.2 (Fisher's exact test), Q value = 1

Table S474.  Gene #48: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
TCHHL1 MUTATED 6 11 8
TCHHL1 WILD-TYPE 61 48 35
'TCHHL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S475.  Gene #48: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
TCHHL1 MUTATED 11 16 12
TCHHL1 WILD-TYPE 82 63 95
'TCHHL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.298 (Fisher's exact test), Q value = 1

Table S476.  Gene #48: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
TCHHL1 MUTATED 10 21 8
TCHHL1 WILD-TYPE 63 101 76
'TCHHL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.641 (Fisher's exact test), Q value = 1

Table S477.  Gene #48: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
TCHHL1 MUTATED 12 15 12
TCHHL1 WILD-TYPE 56 102 73
'TCHHL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.269 (Fisher's exact test), Q value = 1

Table S478.  Gene #48: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
TCHHL1 MUTATED 6 1 11 21
TCHHL1 WILD-TYPE 23 27 59 122
'TCHHL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S479.  Gene #48: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
TCHHL1 MUTATED 14 15 10
TCHHL1 WILD-TYPE 74 87 70
'TCHHL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S480.  Gene #48: 'TCHHL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
TCHHL1 MUTATED 5 17 12 5
TCHHL1 WILD-TYPE 20 95 72 44
'LOC649330 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S481.  Gene #49: 'LOC649330 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
LOC649330 MUTATED 11 4 13
LOC649330 WILD-TYPE 93 72 86
'LOC649330 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.65 (Fisher's exact test), Q value = 1

Table S482.  Gene #49: 'LOC649330 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
LOC649330 MUTATED 5 11 12
LOC649330 WILD-TYPE 66 89 96
'LOC649330 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.76 (Fisher's exact test), Q value = 1

Table S483.  Gene #49: 'LOC649330 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
LOC649330 MUTATED 6 6 2 6
LOC649330 WILD-TYPE 41 51 25 32
'LOC649330 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S484.  Gene #49: 'LOC649330 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
LOC649330 MUTATED 6 9 5
LOC649330 WILD-TYPE 61 50 38
'LOC649330 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S485.  Gene #49: 'LOC649330 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
LOC649330 MUTATED 5 12 11
LOC649330 WILD-TYPE 88 67 96
'LOC649330 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0793 (Fisher's exact test), Q value = 1

Table S486.  Gene #49: 'LOC649330 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
LOC649330 MUTATED 3 17 8
LOC649330 WILD-TYPE 70 105 76
'LOC649330 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.945 (Fisher's exact test), Q value = 1

Table S487.  Gene #49: 'LOC649330 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
LOC649330 MUTATED 7 13 8
LOC649330 WILD-TYPE 61 104 77
'LOC649330 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S488.  Gene #49: 'LOC649330 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
LOC649330 MUTATED 3 3 5 17
LOC649330 WILD-TYPE 26 25 65 126
'LOC649330 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.865 (Fisher's exact test), Q value = 1

Table S489.  Gene #49: 'LOC649330 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
LOC649330 MUTATED 10 11 7
LOC649330 WILD-TYPE 78 91 73
'LOC649330 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.655 (Fisher's exact test), Q value = 1

Table S490.  Gene #49: 'LOC649330 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
LOC649330 MUTATED 2 15 7 4
LOC649330 WILD-TYPE 23 97 77 45
'PCSK1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S491.  Gene #50: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
PCSK1 MUTATED 8 7 11
PCSK1 WILD-TYPE 96 69 88
'PCSK1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S492.  Gene #50: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
PCSK1 MUTATED 5 13 8
PCSK1 WILD-TYPE 66 87 100
'PCSK1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.141 (Fisher's exact test), Q value = 1

Table S493.  Gene #50: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
PCSK1 MUTATED 3 5 0 6
PCSK1 WILD-TYPE 44 52 27 32
'PCSK1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.455 (Fisher's exact test), Q value = 1

Table S494.  Gene #50: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
PCSK1 MUTATED 4 7 3
PCSK1 WILD-TYPE 63 52 40
'PCSK1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.848 (Fisher's exact test), Q value = 1

Table S495.  Gene #50: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
PCSK1 MUTATED 9 6 11
PCSK1 WILD-TYPE 84 73 96
'PCSK1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S496.  Gene #50: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
PCSK1 MUTATED 9 10 7
PCSK1 WILD-TYPE 64 112 77
'PCSK1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S497.  Gene #50: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
PCSK1 MUTATED 7 10 6
PCSK1 WILD-TYPE 61 107 79
'PCSK1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.523 (Fisher's exact test), Q value = 1

Table S498.  Gene #50: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
PCSK1 MUTATED 4 1 7 11
PCSK1 WILD-TYPE 25 27 63 132
'PCSK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S499.  Gene #50: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
PCSK1 MUTATED 7 10 6
PCSK1 WILD-TYPE 81 92 74
'PCSK1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S500.  Gene #50: 'PCSK1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
PCSK1 MUTATED 4 9 9 1
PCSK1 WILD-TYPE 21 103 75 48
'ELF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S501.  Gene #51: 'ELF5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
ELF5 MUTATED 4 2 3
ELF5 WILD-TYPE 100 74 96
'ELF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S502.  Gene #51: 'ELF5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
ELF5 MUTATED 4 2 3
ELF5 WILD-TYPE 67 98 105
'ELF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S503.  Gene #51: 'ELF5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
ELF5 MUTATED 1 1 1 2
ELF5 WILD-TYPE 46 56 26 36
'ELF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.371 (Fisher's exact test), Q value = 1

Table S504.  Gene #51: 'ELF5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
ELF5 MUTATED 2 3 0
ELF5 WILD-TYPE 65 56 43
'ELF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.394 (Fisher's exact test), Q value = 1

Table S505.  Gene #51: 'ELF5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
ELF5 MUTATED 5 2 2
ELF5 WILD-TYPE 88 77 105
'ELF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S506.  Gene #51: 'ELF5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
ELF5 MUTATED 4 3 2
ELF5 WILD-TYPE 69 119 82
'ELF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S507.  Gene #51: 'ELF5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
ELF5 MUTATED 2 2 5
ELF5 WILD-TYPE 66 115 80
'ELF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S508.  Gene #51: 'ELF5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
ELF5 MUTATED 0 1 5 3
ELF5 WILD-TYPE 29 27 65 140
'ELF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S509.  Gene #51: 'ELF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
ELF5 MUTATED 5 1 3
ELF5 WILD-TYPE 83 101 77
'ELF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S510.  Gene #51: 'ELF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
ELF5 MUTATED 0 3 6 0
ELF5 WILD-TYPE 25 109 78 49
'OGDHL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.229 (Fisher's exact test), Q value = 1

Table S511.  Gene #52: 'OGDHL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
OGDHL MUTATED 15 5 13
OGDHL WILD-TYPE 89 71 86
'OGDHL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0645 (Fisher's exact test), Q value = 1

Table S512.  Gene #52: 'OGDHL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
OGDHL MUTATED 5 18 10
OGDHL WILD-TYPE 66 82 98
'OGDHL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.933 (Fisher's exact test), Q value = 1

Table S513.  Gene #52: 'OGDHL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
OGDHL MUTATED 7 7 3 4
OGDHL WILD-TYPE 40 50 24 34
'OGDHL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S514.  Gene #52: 'OGDHL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
OGDHL MUTATED 7 8 6
OGDHL WILD-TYPE 60 51 37
'OGDHL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S515.  Gene #52: 'OGDHL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
OGDHL MUTATED 8 10 15
OGDHL WILD-TYPE 85 69 92
'OGDHL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.767 (Fisher's exact test), Q value = 1

Table S516.  Gene #52: 'OGDHL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
OGDHL MUTATED 7 16 10
OGDHL WILD-TYPE 66 106 74
'OGDHL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0638 (Fisher's exact test), Q value = 1

Table S517.  Gene #52: 'OGDHL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
OGDHL MUTATED 12 16 5
OGDHL WILD-TYPE 56 101 80
'OGDHL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.55 (Fisher's exact test), Q value = 1

Table S518.  Gene #52: 'OGDHL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
OGDHL MUTATED 4 1 9 19
OGDHL WILD-TYPE 25 27 61 124
'OGDHL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0496 (Fisher's exact test), Q value = 1

Table S519.  Gene #52: 'OGDHL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
OGDHL MUTATED 13 16 4
OGDHL WILD-TYPE 75 86 76

Figure S27.  Get High-res Image Gene #52: 'OGDHL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'OGDHL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S520.  Gene #52: 'OGDHL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
OGDHL MUTATED 3 18 10 2
OGDHL WILD-TYPE 22 94 74 47
'PCDP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S521.  Gene #53: 'PCDP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
PCDP1 MUTATED 5 7 6
PCDP1 WILD-TYPE 99 69 93
'PCDP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S522.  Gene #53: 'PCDP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
PCDP1 MUTATED 2 10 6
PCDP1 WILD-TYPE 69 90 102
'PCDP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.479 (Fisher's exact test), Q value = 1

Table S523.  Gene #53: 'PCDP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
PCDP1 MUTATED 3 5 0 3
PCDP1 WILD-TYPE 44 52 27 35
'PCDP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S524.  Gene #53: 'PCDP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
PCDP1 MUTATED 2 6 3
PCDP1 WILD-TYPE 65 53 40
'PCDP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.284 (Fisher's exact test), Q value = 1

Table S525.  Gene #53: 'PCDP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
PCDP1 MUTATED 9 3 6
PCDP1 WILD-TYPE 84 76 101
'PCDP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S526.  Gene #53: 'PCDP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
PCDP1 MUTATED 7 8 3
PCDP1 WILD-TYPE 66 114 81
'PCDP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.472 (Fisher's exact test), Q value = 1

Table S527.  Gene #53: 'PCDP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
PCDP1 MUTATED 5 5 7
PCDP1 WILD-TYPE 63 112 78
'PCDP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S528.  Gene #53: 'PCDP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
PCDP1 MUTATED 2 1 7 7
PCDP1 WILD-TYPE 27 27 63 136
'PCDP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.709 (Fisher's exact test), Q value = 1

Table S529.  Gene #53: 'PCDP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
PCDP1 MUTATED 6 5 6
PCDP1 WILD-TYPE 82 97 74
'PCDP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S530.  Gene #53: 'PCDP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
PCDP1 MUTATED 2 7 8 0
PCDP1 WILD-TYPE 23 105 76 49
'FUT9 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.463 (Fisher's exact test), Q value = 1

Table S531.  Gene #54: 'FUT9 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
FUT9 MUTATED 14 7 8
FUT9 WILD-TYPE 90 69 91
'FUT9 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0318 (Fisher's exact test), Q value = 1

Table S532.  Gene #54: 'FUT9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
FUT9 MUTATED 10 14 5
FUT9 WILD-TYPE 61 86 103

Figure S28.  Get High-res Image Gene #54: 'FUT9 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'FUT9 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S533.  Gene #54: 'FUT9 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
FUT9 MUTATED 4 9 1 6
FUT9 WILD-TYPE 43 48 26 32
'FUT9 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S534.  Gene #54: 'FUT9 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
FUT9 MUTATED 8 9 3
FUT9 WILD-TYPE 59 50 40
'FUT9 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S535.  Gene #54: 'FUT9 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
FUT9 MUTATED 12 5 12
FUT9 WILD-TYPE 81 74 95
'FUT9 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S536.  Gene #54: 'FUT9 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
FUT9 MUTATED 10 9 10
FUT9 WILD-TYPE 63 113 74
'FUT9 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.219 (Fisher's exact test), Q value = 1

Table S537.  Gene #54: 'FUT9 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
FUT9 MUTATED 4 16 7
FUT9 WILD-TYPE 64 101 78
'FUT9 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S538.  Gene #54: 'FUT9 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
FUT9 MUTATED 1 0 8 18
FUT9 WILD-TYPE 28 28 62 125
'FUT9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.255 (Fisher's exact test), Q value = 1

Table S539.  Gene #54: 'FUT9 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
FUT9 MUTATED 8 14 5
FUT9 WILD-TYPE 80 88 75
'FUT9 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S540.  Gene #54: 'FUT9 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
FUT9 MUTATED 1 15 9 2
FUT9 WILD-TYPE 24 97 75 47
'GCOM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S541.  Gene #55: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
GCOM1 MUTATED 9 6 9
GCOM1 WILD-TYPE 95 70 90
'GCOM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S542.  Gene #55: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
GCOM1 MUTATED 4 12 8
GCOM1 WILD-TYPE 67 88 100
'GCOM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S543.  Gene #55: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
GCOM1 MUTATED 1 5 1 3
GCOM1 WILD-TYPE 46 52 26 35
'GCOM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S544.  Gene #55: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
GCOM1 MUTATED 4 5 1
GCOM1 WILD-TYPE 63 54 42
'GCOM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0234 (Fisher's exact test), Q value = 1

Table S545.  Gene #55: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
GCOM1 MUTATED 8 12 4
GCOM1 WILD-TYPE 85 67 103

Figure S29.  Get High-res Image Gene #55: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'GCOM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.118 (Fisher's exact test), Q value = 1

Table S546.  Gene #55: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
GCOM1 MUTATED 7 14 3
GCOM1 WILD-TYPE 66 108 81
'GCOM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S547.  Gene #55: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
GCOM1 MUTATED 6 12 5
GCOM1 WILD-TYPE 62 105 80
'GCOM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.221 (Fisher's exact test), Q value = 1

Table S548.  Gene #55: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
GCOM1 MUTATED 1 0 8 14
GCOM1 WILD-TYPE 28 28 62 129
'GCOM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S549.  Gene #55: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
GCOM1 MUTATED 8 11 4
GCOM1 WILD-TYPE 80 91 76
'GCOM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S550.  Gene #55: 'GCOM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
GCOM1 MUTATED 1 12 9 1
GCOM1 WILD-TYPE 24 100 75 48
'SIRPB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.925 (Fisher's exact test), Q value = 1

Table S551.  Gene #56: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
SIRPB1 MUTATED 9 5 8
SIRPB1 WILD-TYPE 95 71 91
'SIRPB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S552.  Gene #56: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
SIRPB1 MUTATED 5 7 10
SIRPB1 WILD-TYPE 66 93 98
'SIRPB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S553.  Gene #56: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
SIRPB1 MUTATED 4 5 0 6
SIRPB1 WILD-TYPE 43 52 27 32
'SIRPB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S554.  Gene #56: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
SIRPB1 MUTATED 5 8 2
SIRPB1 WILD-TYPE 62 51 41
'SIRPB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S555.  Gene #56: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
SIRPB1 MUTATED 7 9 6
SIRPB1 WILD-TYPE 86 70 101
'SIRPB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.174 (Fisher's exact test), Q value = 1

Table S556.  Gene #56: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
SIRPB1 MUTATED 6 13 3
SIRPB1 WILD-TYPE 67 109 81
'SIRPB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S557.  Gene #56: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
SIRPB1 MUTATED 8 7 6
SIRPB1 WILD-TYPE 60 110 79
'SIRPB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.183 (Fisher's exact test), Q value = 1

Table S558.  Gene #56: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
SIRPB1 MUTATED 2 0 9 10
SIRPB1 WILD-TYPE 27 28 61 133
'SIRPB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S559.  Gene #56: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
SIRPB1 MUTATED 8 8 5
SIRPB1 WILD-TYPE 80 94 75
'SIRPB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0779 (Fisher's exact test), Q value = 1

Table S560.  Gene #56: 'SIRPB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
SIRPB1 MUTATED 2 10 9 0
SIRPB1 WILD-TYPE 23 102 75 49
'PENK MUTATION STATUS' versus 'CN_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S561.  Gene #57: 'PENK MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
PENK MUTATED 8 4 11
PENK WILD-TYPE 96 72 88
'PENK MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0815 (Fisher's exact test), Q value = 1

Table S562.  Gene #57: 'PENK MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
PENK MUTATED 3 6 14
PENK WILD-TYPE 68 94 94
'PENK MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S563.  Gene #57: 'PENK MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
PENK MUTATED 7 7 1 2
PENK WILD-TYPE 40 50 26 36
'PENK MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.813 (Fisher's exact test), Q value = 1

Table S564.  Gene #57: 'PENK MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
PENK MUTATED 8 5 4
PENK WILD-TYPE 59 54 39
'PENK MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S565.  Gene #57: 'PENK MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
PENK MUTATED 4 10 9
PENK WILD-TYPE 89 69 98
'PENK MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S566.  Gene #57: 'PENK MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
PENK MUTATED 4 13 6
PENK WILD-TYPE 69 109 78
'PENK MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S567.  Gene #57: 'PENK MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
PENK MUTATED 4 10 9
PENK WILD-TYPE 64 107 76
'PENK MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S568.  Gene #57: 'PENK MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
PENK MUTATED 1 2 7 13
PENK WILD-TYPE 28 26 63 130
'PENK MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S569.  Gene #57: 'PENK MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
PENK MUTATED 4 10 9
PENK WILD-TYPE 84 92 71
'PENK MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S570.  Gene #57: 'PENK MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
PENK MUTATED 0 12 7 4
PENK WILD-TYPE 25 100 77 45
'CHGB MUTATION STATUS' versus 'CN_CNMF'

P value = 0.676 (Fisher's exact test), Q value = 1

Table S571.  Gene #58: 'CHGB MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
CHGB MUTATED 11 6 12
CHGB WILD-TYPE 93 70 87
'CHGB MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S572.  Gene #58: 'CHGB MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
CHGB MUTATED 4 11 14
CHGB WILD-TYPE 67 89 94
'CHGB MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.066 (Fisher's exact test), Q value = 1

Table S573.  Gene #58: 'CHGB MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
CHGB MUTATED 8 4 0 2
CHGB WILD-TYPE 39 53 27 36
'CHGB MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.00639 (Fisher's exact test), Q value = 1

Table S574.  Gene #58: 'CHGB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
CHGB MUTATED 1 10 3
CHGB WILD-TYPE 66 49 40

Figure S30.  Get High-res Image Gene #58: 'CHGB MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'CHGB MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S575.  Gene #58: 'CHGB MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
CHGB MUTATED 11 11 7
CHGB WILD-TYPE 82 68 100
'CHGB MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.094 (Fisher's exact test), Q value = 1

Table S576.  Gene #58: 'CHGB MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
CHGB MUTATED 8 17 4
CHGB WILD-TYPE 65 105 80
'CHGB MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.324 (Fisher's exact test), Q value = 1

Table S577.  Gene #58: 'CHGB MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
CHGB MUTATED 7 9 12
CHGB WILD-TYPE 61 108 73
'CHGB MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.83 (Fisher's exact test), Q value = 1

Table S578.  Gene #58: 'CHGB MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
CHGB MUTATED 2 2 9 15
CHGB WILD-TYPE 27 26 61 128
'CHGB MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S579.  Gene #58: 'CHGB MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
CHGB MUTATED 9 8 11
CHGB WILD-TYPE 79 94 69
'CHGB MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S580.  Gene #58: 'CHGB MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
CHGB MUTATED 2 12 9 5
CHGB WILD-TYPE 23 100 75 44
'C8ORF34 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.75 (Fisher's exact test), Q value = 1

Table S581.  Gene #59: 'C8ORF34 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
C8ORF34 MUTATED 9 9 11
C8ORF34 WILD-TYPE 95 67 88
'C8ORF34 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S582.  Gene #59: 'C8ORF34 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
C8ORF34 MUTATED 6 14 9
C8ORF34 WILD-TYPE 65 86 99
'C8ORF34 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.348 (Fisher's exact test), Q value = 1

Table S583.  Gene #59: 'C8ORF34 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
C8ORF34 MUTATED 8 6 1 3
C8ORF34 WILD-TYPE 39 51 26 35
'C8ORF34 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S584.  Gene #59: 'C8ORF34 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
C8ORF34 MUTATED 7 5 6
C8ORF34 WILD-TYPE 60 54 37
'C8ORF34 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0995 (Fisher's exact test), Q value = 1

Table S585.  Gene #59: 'C8ORF34 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
C8ORF34 MUTATED 15 6 8
C8ORF34 WILD-TYPE 78 73 99
'C8ORF34 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0918 (Fisher's exact test), Q value = 1

Table S586.  Gene #59: 'C8ORF34 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
C8ORF34 MUTATED 12 8 9
C8ORF34 WILD-TYPE 61 114 75
'C8ORF34 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0919 (Fisher's exact test), Q value = 1

Table S587.  Gene #59: 'C8ORF34 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
C8ORF34 MUTATED 7 7 13
C8ORF34 WILD-TYPE 61 110 72
'C8ORF34 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.296 (Fisher's exact test), Q value = 1

Table S588.  Gene #59: 'C8ORF34 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
C8ORF34 MUTATED 4 4 9 10
C8ORF34 WILD-TYPE 25 24 61 133
'C8ORF34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0989 (Fisher's exact test), Q value = 1

Table S589.  Gene #59: 'C8ORF34 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
C8ORF34 MUTATED 7 7 13
C8ORF34 WILD-TYPE 81 95 67
'C8ORF34 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.251 (Fisher's exact test), Q value = 1

Table S590.  Gene #59: 'C8ORF34 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
C8ORF34 MUTATED 4 7 11 5
C8ORF34 WILD-TYPE 21 105 73 44
'GALNTL5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0887 (Fisher's exact test), Q value = 1

Table S591.  Gene #60: 'GALNTL5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
GALNTL5 MUTATED 9 1 5
GALNTL5 WILD-TYPE 95 75 94
'GALNTL5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S592.  Gene #60: 'GALNTL5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
GALNTL5 MUTATED 4 8 3
GALNTL5 WILD-TYPE 67 92 105
'GALNTL5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S593.  Gene #60: 'GALNTL5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
GALNTL5 MUTATED 5 2 1 1
GALNTL5 WILD-TYPE 42 55 26 37
'GALNTL5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S594.  Gene #60: 'GALNTL5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
GALNTL5 MUTATED 3 3 3
GALNTL5 WILD-TYPE 64 56 40
'GALNTL5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.717 (Fisher's exact test), Q value = 1

Table S595.  Gene #60: 'GALNTL5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
GALNTL5 MUTATED 5 3 7
GALNTL5 WILD-TYPE 88 76 100
'GALNTL5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S596.  Gene #60: 'GALNTL5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
GALNTL5 MUTATED 5 5 5
GALNTL5 WILD-TYPE 68 117 79
'GALNTL5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S597.  Gene #60: 'GALNTL5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
GALNTL5 MUTATED 2 7 6
GALNTL5 WILD-TYPE 66 110 79
'GALNTL5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S598.  Gene #60: 'GALNTL5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
GALNTL5 MUTATED 1 1 4 9
GALNTL5 WILD-TYPE 28 27 66 134
'GALNTL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S599.  Gene #60: 'GALNTL5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
GALNTL5 MUTATED 3 6 6
GALNTL5 WILD-TYPE 85 96 74
'GALNTL5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S600.  Gene #60: 'GALNTL5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
GALNTL5 MUTATED 1 9 4 1
GALNTL5 WILD-TYPE 24 103 80 48
'TCEB3C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0847 (Fisher's exact test), Q value = 1

Table S601.  Gene #61: 'TCEB3C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
TCEB3C MUTATED 15 4 7
TCEB3C WILD-TYPE 89 72 92
'TCEB3C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.524 (Fisher's exact test), Q value = 1

Table S602.  Gene #61: 'TCEB3C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
TCEB3C MUTATED 6 12 8
TCEB3C WILD-TYPE 65 88 100
'TCEB3C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S603.  Gene #61: 'TCEB3C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
TCEB3C MUTATED 7 5 3 5
TCEB3C WILD-TYPE 40 52 24 33
'TCEB3C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S604.  Gene #61: 'TCEB3C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
TCEB3C MUTATED 10 5 5
TCEB3C WILD-TYPE 57 54 38
'TCEB3C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.682 (Fisher's exact test), Q value = 1

Table S605.  Gene #61: 'TCEB3C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
TCEB3C MUTATED 8 6 12
TCEB3C WILD-TYPE 85 73 95
'TCEB3C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S606.  Gene #61: 'TCEB3C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
TCEB3C MUTATED 6 8 12
TCEB3C WILD-TYPE 67 114 72
'TCEB3C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.932 (Fisher's exact test), Q value = 1

Table S607.  Gene #61: 'TCEB3C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
TCEB3C MUTATED 7 10 8
TCEB3C WILD-TYPE 61 107 77
'TCEB3C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.463 (Fisher's exact test), Q value = 1

Table S608.  Gene #61: 'TCEB3C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
TCEB3C MUTATED 5 2 5 13
TCEB3C WILD-TYPE 24 26 65 130
'TCEB3C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.958 (Fisher's exact test), Q value = 1

Table S609.  Gene #61: 'TCEB3C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
TCEB3C MUTATED 8 9 8
TCEB3C WILD-TYPE 80 93 72
'TCEB3C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S610.  Gene #61: 'TCEB3C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
TCEB3C MUTATED 5 9 5 6
TCEB3C WILD-TYPE 20 103 79 43
'LRRC4C MUTATION STATUS' versus 'CN_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S611.  Gene #62: 'LRRC4C MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
LRRC4C MUTATED 19 8 14
LRRC4C WILD-TYPE 85 68 85
'LRRC4C MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.186 (Fisher's exact test), Q value = 1

Table S612.  Gene #62: 'LRRC4C MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
LRRC4C MUTATED 8 20 13
LRRC4C WILD-TYPE 63 80 95
'LRRC4C MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.201 (Fisher's exact test), Q value = 1

Table S613.  Gene #62: 'LRRC4C MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
LRRC4C MUTATED 6 8 2 10
LRRC4C WILD-TYPE 41 49 25 28
'LRRC4C MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.615 (Fisher's exact test), Q value = 1

Table S614.  Gene #62: 'LRRC4C MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
LRRC4C MUTATED 12 7 7
LRRC4C WILD-TYPE 55 52 36
'LRRC4C MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S615.  Gene #62: 'LRRC4C MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
LRRC4C MUTATED 10 13 18
LRRC4C WILD-TYPE 83 66 89
'LRRC4C MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0663 (Fisher's exact test), Q value = 1

Table S616.  Gene #62: 'LRRC4C MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
LRRC4C MUTATED 6 17 18
LRRC4C WILD-TYPE 67 105 66
'LRRC4C MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.585 (Fisher's exact test), Q value = 1

Table S617.  Gene #62: 'LRRC4C MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
LRRC4C MUTATED 12 17 10
LRRC4C WILD-TYPE 56 100 75
'LRRC4C MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S618.  Gene #62: 'LRRC4C MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
LRRC4C MUTATED 6 2 9 22
LRRC4C WILD-TYPE 23 26 61 121
'LRRC4C MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.907 (Fisher's exact test), Q value = 1

Table S619.  Gene #62: 'LRRC4C MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
LRRC4C MUTATED 12 16 11
LRRC4C WILD-TYPE 76 86 69
'LRRC4C MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0995 (Fisher's exact test), Q value = 1

Table S620.  Gene #62: 'LRRC4C MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
LRRC4C MUTATED 5 22 8 4
LRRC4C WILD-TYPE 20 90 76 45
'SYCP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.153 (Fisher's exact test), Q value = 1

Table S621.  Gene #63: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
SYCP1 MUTATED 10 4 14
SYCP1 WILD-TYPE 94 72 85
'SYCP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0349 (Fisher's exact test), Q value = 1

Table S622.  Gene #63: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
SYCP1 MUTATED 3 16 9
SYCP1 WILD-TYPE 68 84 99

Figure S31.  Get High-res Image Gene #63: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SYCP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S623.  Gene #63: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
SYCP1 MUTATED 7 4 0 4
SYCP1 WILD-TYPE 40 53 27 34
'SYCP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S624.  Gene #63: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
SYCP1 MUTATED 5 7 3
SYCP1 WILD-TYPE 62 52 40
'SYCP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0381 (Fisher's exact test), Q value = 1

Table S625.  Gene #63: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
SYCP1 MUTATED 6 14 8
SYCP1 WILD-TYPE 87 65 99

Figure S32.  Get High-res Image Gene #63: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'SYCP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.347 (Fisher's exact test), Q value = 1

Table S626.  Gene #63: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
SYCP1 MUTATED 5 16 7
SYCP1 WILD-TYPE 68 106 77
'SYCP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.714 (Fisher's exact test), Q value = 1

Table S627.  Gene #63: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
SYCP1 MUTATED 5 13 8
SYCP1 WILD-TYPE 63 104 77
'SYCP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.438 (Fisher's exact test), Q value = 1

Table S628.  Gene #63: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
SYCP1 MUTATED 2 1 5 18
SYCP1 WILD-TYPE 27 27 65 125
'SYCP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S629.  Gene #63: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
SYCP1 MUTATED 8 12 6
SYCP1 WILD-TYPE 80 90 74
'SYCP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S630.  Gene #63: 'SYCP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
SYCP1 MUTATED 2 14 5 5
SYCP1 WILD-TYPE 23 98 79 44
'RCAN2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0468 (Fisher's exact test), Q value = 1

Table S631.  Gene #64: 'RCAN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
RCAN2 MUTATED 10 1 4
RCAN2 WILD-TYPE 94 75 95

Figure S33.  Get High-res Image Gene #64: 'RCAN2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RCAN2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S632.  Gene #64: 'RCAN2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
RCAN2 MUTATED 2 7 6
RCAN2 WILD-TYPE 69 93 102
'RCAN2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S633.  Gene #64: 'RCAN2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
RCAN2 MUTATED 3 3 0 3
RCAN2 WILD-TYPE 44 54 27 35
'RCAN2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S634.  Gene #64: 'RCAN2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
RCAN2 MUTATED 2 6 1
RCAN2 WILD-TYPE 65 53 42
'RCAN2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S635.  Gene #64: 'RCAN2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
RCAN2 MUTATED 3 4 8
RCAN2 WILD-TYPE 90 75 99
'RCAN2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.89 (Fisher's exact test), Q value = 1

Table S636.  Gene #64: 'RCAN2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
RCAN2 MUTATED 3 7 5
RCAN2 WILD-TYPE 70 115 79
'RCAN2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.217 (Fisher's exact test), Q value = 1

Table S637.  Gene #64: 'RCAN2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
RCAN2 MUTATED 2 10 3
RCAN2 WILD-TYPE 66 107 82
'RCAN2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S638.  Gene #64: 'RCAN2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
RCAN2 MUTATED 0 0 4 11
RCAN2 WILD-TYPE 29 28 66 132
'RCAN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.209 (Fisher's exact test), Q value = 1

Table S639.  Gene #64: 'RCAN2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
RCAN2 MUTATED 3 9 3
RCAN2 WILD-TYPE 85 93 77
'RCAN2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S640.  Gene #64: 'RCAN2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
RCAN2 MUTATED 0 10 4 1
RCAN2 WILD-TYPE 25 102 80 48
'APCS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.879 (Fisher's exact test), Q value = 1

Table S641.  Gene #65: 'APCS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
APCS MUTATED 4 4 5
APCS WILD-TYPE 100 72 94
'APCS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S642.  Gene #65: 'APCS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
APCS MUTATED 4 7 2
APCS WILD-TYPE 67 93 106
'APCS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S643.  Gene #65: 'APCS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
APCS MUTATED 2 4 1 1
APCS WILD-TYPE 45 53 26 37
'APCS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S644.  Gene #65: 'APCS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
APCS MUTATED 3 4 1
APCS WILD-TYPE 64 55 42
'APCS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S645.  Gene #65: 'APCS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
APCS MUTATED 6 2 5
APCS WILD-TYPE 87 77 102
'APCS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S646.  Gene #65: 'APCS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
APCS MUTATED 6 4 3
APCS WILD-TYPE 67 118 81
'APCS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S647.  Gene #65: 'APCS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
APCS MUTATED 5 5 3
APCS WILD-TYPE 63 112 82
'APCS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S648.  Gene #65: 'APCS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
APCS MUTATED 2 0 5 6
APCS WILD-TYPE 27 28 65 137
'APCS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S649.  Gene #65: 'APCS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
APCS MUTATED 6 4 3
APCS WILD-TYPE 82 98 77
'APCS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S650.  Gene #65: 'APCS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
APCS MUTATED 1 6 6 0
APCS WILD-TYPE 24 106 78 49
'CYP3A7 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S651.  Gene #66: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
CYP3A7 MUTATED 10 4 11
CYP3A7 WILD-TYPE 94 72 88
'CYP3A7 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0914 (Fisher's exact test), Q value = 1

Table S652.  Gene #66: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
CYP3A7 MUTATED 2 11 12
CYP3A7 WILD-TYPE 69 89 96
'CYP3A7 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S653.  Gene #66: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
CYP3A7 MUTATED 5 3 3 4
CYP3A7 WILD-TYPE 42 54 24 34
'CYP3A7 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.773 (Fisher's exact test), Q value = 1

Table S654.  Gene #66: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
CYP3A7 MUTATED 7 4 4
CYP3A7 WILD-TYPE 60 55 39
'CYP3A7 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S655.  Gene #66: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
CYP3A7 MUTATED 4 10 11
CYP3A7 WILD-TYPE 89 69 96
'CYP3A7 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S656.  Gene #66: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
CYP3A7 MUTATED 4 15 6
CYP3A7 WILD-TYPE 69 107 78
'CYP3A7 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S657.  Gene #66: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
CYP3A7 MUTATED 4 13 7
CYP3A7 WILD-TYPE 64 104 78
'CYP3A7 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S658.  Gene #66: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
CYP3A7 MUTATED 1 2 5 16
CYP3A7 WILD-TYPE 28 26 65 127
'CYP3A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S659.  Gene #66: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
CYP3A7 MUTATED 7 13 4
CYP3A7 WILD-TYPE 81 89 76
'CYP3A7 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S660.  Gene #66: 'CYP3A7 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
CYP3A7 MUTATED 0 14 7 3
CYP3A7 WILD-TYPE 25 98 77 46
'STXBP5L MUTATION STATUS' versus 'CN_CNMF'

P value = 0.965 (Fisher's exact test), Q value = 1

Table S661.  Gene #67: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
STXBP5L MUTATED 21 14 20
STXBP5L WILD-TYPE 83 62 79
'STXBP5L MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S662.  Gene #67: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
STXBP5L MUTATED 11 19 25
STXBP5L WILD-TYPE 60 81 83
'STXBP5L MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S663.  Gene #67: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
STXBP5L MUTATED 12 11 4 8
STXBP5L WILD-TYPE 35 46 23 30
'STXBP5L MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S664.  Gene #67: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
STXBP5L MUTATED 13 17 5
STXBP5L WILD-TYPE 54 42 38
'STXBP5L MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.042 (Fisher's exact test), Q value = 1

Table S665.  Gene #67: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
STXBP5L MUTATED 19 22 14
STXBP5L WILD-TYPE 74 57 93

Figure S34.  Get High-res Image Gene #67: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'STXBP5L MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0921 (Fisher's exact test), Q value = 1

Table S666.  Gene #67: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
STXBP5L MUTATED 17 28 10
STXBP5L WILD-TYPE 56 94 74
'STXBP5L MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S667.  Gene #67: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
STXBP5L MUTATED 14 24 15
STXBP5L WILD-TYPE 54 93 70
'STXBP5L MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S668.  Gene #67: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
STXBP5L MUTATED 7 3 13 30
STXBP5L WILD-TYPE 22 25 57 113
'STXBP5L MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S669.  Gene #67: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
STXBP5L MUTATED 18 21 14
STXBP5L WILD-TYPE 70 81 66
'STXBP5L MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0462 (Fisher's exact test), Q value = 1

Table S670.  Gene #67: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
STXBP5L MUTATED 6 29 14 4
STXBP5L WILD-TYPE 19 83 70 45

Figure S35.  Get High-res Image Gene #67: 'STXBP5L MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'LCE1B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0852 (Fisher's exact test), Q value = 1

Table S671.  Gene #68: 'LCE1B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
LCE1B MUTATED 9 3 2
LCE1B WILD-TYPE 95 73 97
'LCE1B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 1

Table S672.  Gene #68: 'LCE1B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
LCE1B MUTATED 6 3 5
LCE1B WILD-TYPE 65 97 103
'LCE1B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S673.  Gene #68: 'LCE1B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
LCE1B MUTATED 3 3 2 3
LCE1B WILD-TYPE 44 54 25 35
'LCE1B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S674.  Gene #68: 'LCE1B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
LCE1B MUTATED 5 5 1
LCE1B WILD-TYPE 62 54 42
'LCE1B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S675.  Gene #68: 'LCE1B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
LCE1B MUTATED 6 1 7
LCE1B WILD-TYPE 87 78 100
'LCE1B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S676.  Gene #68: 'LCE1B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
LCE1B MUTATED 5 4 5
LCE1B WILD-TYPE 68 118 79
'LCE1B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S677.  Gene #68: 'LCE1B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
LCE1B MUTATED 3 7 3
LCE1B WILD-TYPE 65 110 82
'LCE1B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S678.  Gene #68: 'LCE1B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
LCE1B MUTATED 1 1 3 8
LCE1B WILD-TYPE 28 27 67 135
'LCE1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.568 (Fisher's exact test), Q value = 1

Table S679.  Gene #68: 'LCE1B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
LCE1B MUTATED 3 7 3
LCE1B WILD-TYPE 85 95 77
'LCE1B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S680.  Gene #68: 'LCE1B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
LCE1B MUTATED 1 7 3 2
LCE1B WILD-TYPE 24 105 81 47
'SCN5A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.976 (Fisher's exact test), Q value = 1

Table S681.  Gene #69: 'SCN5A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
SCN5A MUTATED 26 18 25
SCN5A WILD-TYPE 78 58 74
'SCN5A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.316 (Fisher's exact test), Q value = 1

Table S682.  Gene #69: 'SCN5A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
SCN5A MUTATED 15 30 24
SCN5A WILD-TYPE 56 70 84
'SCN5A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S683.  Gene #69: 'SCN5A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
SCN5A MUTATED 12 11 4 14
SCN5A WILD-TYPE 35 46 23 24
'SCN5A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.358 (Fisher's exact test), Q value = 1

Table S684.  Gene #69: 'SCN5A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
SCN5A MUTATED 13 18 10
SCN5A WILD-TYPE 54 41 33
'SCN5A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S685.  Gene #69: 'SCN5A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
SCN5A MUTATED 22 19 28
SCN5A WILD-TYPE 71 60 79
'SCN5A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.513 (Fisher's exact test), Q value = 1

Table S686.  Gene #69: 'SCN5A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
SCN5A MUTATED 15 30 24
SCN5A WILD-TYPE 58 92 60
'SCN5A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.643 (Fisher's exact test), Q value = 1

Table S687.  Gene #69: 'SCN5A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
SCN5A MUTATED 14 29 23
SCN5A WILD-TYPE 54 88 62
'SCN5A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.94 (Fisher's exact test), Q value = 1

Table S688.  Gene #69: 'SCN5A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
SCN5A MUTATED 6 6 17 37
SCN5A WILD-TYPE 23 22 53 106
'SCN5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S689.  Gene #69: 'SCN5A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
SCN5A MUTATED 20 28 18
SCN5A WILD-TYPE 68 74 62
'SCN5A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S690.  Gene #69: 'SCN5A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
SCN5A MUTATED 5 31 18 12
SCN5A WILD-TYPE 20 81 66 37
'TPTE2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.559 (Fisher's exact test), Q value = 1

Table S691.  Gene #70: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
TPTE2 MUTATED 15 7 11
TPTE2 WILD-TYPE 89 69 88
'TPTE2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S692.  Gene #70: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
TPTE2 MUTATED 7 15 11
TPTE2 WILD-TYPE 64 85 97
'TPTE2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.213 (Fisher's exact test), Q value = 1

Table S693.  Gene #70: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
TPTE2 MUTATED 3 11 3 7
TPTE2 WILD-TYPE 44 46 24 31
'TPTE2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S694.  Gene #70: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
TPTE2 MUTATED 11 9 4
TPTE2 WILD-TYPE 56 50 39
'TPTE2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.685 (Fisher's exact test), Q value = 1

Table S695.  Gene #70: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
TPTE2 MUTATED 10 8 15
TPTE2 WILD-TYPE 83 71 92
'TPTE2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.973 (Fisher's exact test), Q value = 1

Table S696.  Gene #70: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
TPTE2 MUTATED 8 15 10
TPTE2 WILD-TYPE 65 107 74
'TPTE2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.102 (Fisher's exact test), Q value = 1

Table S697.  Gene #70: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
TPTE2 MUTATED 10 17 5
TPTE2 WILD-TYPE 58 100 80
'TPTE2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.858 (Fisher's exact test), Q value = 1

Table S698.  Gene #70: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
TPTE2 MUTATED 2 3 8 19
TPTE2 WILD-TYPE 27 25 62 124
'TPTE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0565 (Fisher's exact test), Q value = 1

Table S699.  Gene #70: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
TPTE2 MUTATED 12 16 4
TPTE2 WILD-TYPE 76 86 76
'TPTE2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S700.  Gene #70: 'TPTE2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
TPTE2 MUTATED 2 18 8 4
TPTE2 WILD-TYPE 23 94 76 45
'LRTM1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S701.  Gene #71: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
LRTM1 MUTATED 8 7 11
LRTM1 WILD-TYPE 96 69 88
'LRTM1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S702.  Gene #71: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
LRTM1 MUTATED 4 11 11
LRTM1 WILD-TYPE 67 89 97
'LRTM1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.549 (Fisher's exact test), Q value = 1

Table S703.  Gene #71: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
LRTM1 MUTATED 7 6 3 2
LRTM1 WILD-TYPE 40 51 24 36
'LRTM1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S704.  Gene #71: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
LRTM1 MUTATED 8 5 5
LRTM1 WILD-TYPE 59 54 38
'LRTM1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.949 (Fisher's exact test), Q value = 1

Table S705.  Gene #71: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
LRTM1 MUTATED 8 8 10
LRTM1 WILD-TYPE 85 71 97
'LRTM1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.551 (Fisher's exact test), Q value = 1

Table S706.  Gene #71: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
LRTM1 MUTATED 5 11 10
LRTM1 WILD-TYPE 68 111 74
'LRTM1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.675 (Fisher's exact test), Q value = 1

Table S707.  Gene #71: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
LRTM1 MUTATED 5 13 7
LRTM1 WILD-TYPE 63 104 78
'LRTM1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 1

Table S708.  Gene #71: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
LRTM1 MUTATED 4 0 6 15
LRTM1 WILD-TYPE 25 28 64 128
'LRTM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S709.  Gene #71: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
LRTM1 MUTATED 9 10 6
LRTM1 WILD-TYPE 79 92 74
'LRTM1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.571 (Fisher's exact test), Q value = 1

Table S710.  Gene #71: 'LRTM1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
LRTM1 MUTATED 3 13 6 3
LRTM1 WILD-TYPE 22 99 78 46
'SLC10A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S711.  Gene #72: 'SLC10A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
SLC10A2 MUTATED 5 9 10
SLC10A2 WILD-TYPE 99 67 89
'SLC10A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S712.  Gene #72: 'SLC10A2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
SLC10A2 MUTATED 2 11 11
SLC10A2 WILD-TYPE 69 89 97
'SLC10A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S713.  Gene #72: 'SLC10A2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
SLC10A2 MUTATED 6 2 1 6
SLC10A2 WILD-TYPE 41 55 26 32
'SLC10A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.35 (Fisher's exact test), Q value = 1

Table S714.  Gene #72: 'SLC10A2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
SLC10A2 MUTATED 4 5 6
SLC10A2 WILD-TYPE 63 54 37
'SLC10A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.127 (Fisher's exact test), Q value = 1

Table S715.  Gene #72: 'SLC10A2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
SLC10A2 MUTATED 4 10 10
SLC10A2 WILD-TYPE 89 69 97
'SLC10A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S716.  Gene #72: 'SLC10A2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
SLC10A2 MUTATED 3 14 7
SLC10A2 WILD-TYPE 70 108 77
'SLC10A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.578 (Fisher's exact test), Q value = 1

Table S717.  Gene #72: 'SLC10A2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
SLC10A2 MUTATED 7 10 5
SLC10A2 WILD-TYPE 61 107 80
'SLC10A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S718.  Gene #72: 'SLC10A2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
SLC10A2 MUTATED 5 2 4 11
SLC10A2 WILD-TYPE 24 26 66 132
'SLC10A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S719.  Gene #72: 'SLC10A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
SLC10A2 MUTATED 9 7 6
SLC10A2 WILD-TYPE 79 95 74
'SLC10A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S720.  Gene #72: 'SLC10A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
SLC10A2 MUTATED 5 9 4 4
SLC10A2 WILD-TYPE 20 103 80 45
'OR2W1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0762 (Fisher's exact test), Q value = 1

Table S721.  Gene #73: 'OR2W1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
OR2W1 MUTATED 5 3 12
OR2W1 WILD-TYPE 99 73 87
'OR2W1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S722.  Gene #73: 'OR2W1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
OR2W1 MUTATED 3 9 8
OR2W1 WILD-TYPE 68 91 100
'OR2W1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S723.  Gene #73: 'OR2W1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
OR2W1 MUTATED 2 3 1 4
OR2W1 WILD-TYPE 45 54 26 34
'OR2W1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S724.  Gene #73: 'OR2W1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
OR2W1 MUTATED 2 5 3
OR2W1 WILD-TYPE 65 54 40
'OR2W1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S725.  Gene #73: 'OR2W1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
OR2W1 MUTATED 5 8 7
OR2W1 WILD-TYPE 88 71 100
'OR2W1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.522 (Fisher's exact test), Q value = 1

Table S726.  Gene #73: 'OR2W1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
OR2W1 MUTATED 3 10 7
OR2W1 WILD-TYPE 70 112 77
'OR2W1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.268 (Fisher's exact test), Q value = 1

Table S727.  Gene #73: 'OR2W1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
OR2W1 MUTATED 6 5 8
OR2W1 WILD-TYPE 62 112 77
'OR2W1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S728.  Gene #73: 'OR2W1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
OR2W1 MUTATED 2 1 6 10
OR2W1 WILD-TYPE 27 27 64 133
'OR2W1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.787 (Fisher's exact test), Q value = 1

Table S729.  Gene #73: 'OR2W1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
OR2W1 MUTATED 6 6 7
OR2W1 WILD-TYPE 82 96 73
'OR2W1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S730.  Gene #73: 'OR2W1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
OR2W1 MUTATED 2 8 6 3
OR2W1 WILD-TYPE 23 104 78 46
'NF1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0984 (Fisher's exact test), Q value = 1

Table S731.  Gene #74: 'NF1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
NF1 MUTATED 17 5 16
NF1 WILD-TYPE 87 71 83
'NF1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.26 (Fisher's exact test), Q value = 1

Table S732.  Gene #74: 'NF1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
NF1 MUTATED 9 18 11
NF1 WILD-TYPE 62 82 97
'NF1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S733.  Gene #74: 'NF1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
NF1 MUTATED 6 9 3 9
NF1 WILD-TYPE 41 48 24 29
'NF1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.208 (Fisher's exact test), Q value = 1

Table S734.  Gene #74: 'NF1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
NF1 MUTATED 15 7 5
NF1 WILD-TYPE 52 52 38
'NF1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S735.  Gene #74: 'NF1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
NF1 MUTATED 9 11 18
NF1 WILD-TYPE 84 68 89
'NF1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S736.  Gene #74: 'NF1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
NF1 MUTATED 8 15 15
NF1 WILD-TYPE 65 107 69
'NF1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S737.  Gene #74: 'NF1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
NF1 MUTATED 14 16 8
NF1 WILD-TYPE 54 101 77
'NF1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0889 (Fisher's exact test), Q value = 1

Table S738.  Gene #74: 'NF1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
NF1 MUTATED 5 0 10 23
NF1 WILD-TYPE 24 28 60 120
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S739.  Gene #74: 'NF1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
NF1 MUTATED 15 17 6
NF1 WILD-TYPE 73 85 74
'NF1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.242 (Fisher's exact test), Q value = 1

Table S740.  Gene #74: 'NF1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
NF1 MUTATED 4 21 9 4
NF1 WILD-TYPE 21 91 75 45
'ANGPT1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.504 (Fisher's exact test), Q value = 1

Table S741.  Gene #75: 'ANGPT1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
ANGPT1 MUTATED 14 6 10
ANGPT1 WILD-TYPE 90 70 89
'ANGPT1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0173 (Fisher's exact test), Q value = 1

Table S742.  Gene #75: 'ANGPT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
ANGPT1 MUTATED 4 18 8
ANGPT1 WILD-TYPE 67 82 100

Figure S36.  Get High-res Image Gene #75: 'ANGPT1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'ANGPT1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S743.  Gene #75: 'ANGPT1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
ANGPT1 MUTATED 6 3 1 3
ANGPT1 WILD-TYPE 41 54 26 35
'ANGPT1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S744.  Gene #75: 'ANGPT1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
ANGPT1 MUTATED 4 5 4
ANGPT1 WILD-TYPE 63 54 39
'ANGPT1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S745.  Gene #75: 'ANGPT1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
ANGPT1 MUTATED 10 10 10
ANGPT1 WILD-TYPE 83 69 97
'ANGPT1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.95 (Fisher's exact test), Q value = 1

Table S746.  Gene #75: 'ANGPT1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
ANGPT1 MUTATED 7 14 9
ANGPT1 WILD-TYPE 66 108 75
'ANGPT1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.703 (Fisher's exact test), Q value = 1

Table S747.  Gene #75: 'ANGPT1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
ANGPT1 MUTATED 7 11 11
ANGPT1 WILD-TYPE 61 106 74
'ANGPT1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.984 (Fisher's exact test), Q value = 1

Table S748.  Gene #75: 'ANGPT1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
ANGPT1 MUTATED 3 3 8 15
ANGPT1 WILD-TYPE 26 25 62 128
'ANGPT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S749.  Gene #75: 'ANGPT1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
ANGPT1 MUTATED 9 11 9
ANGPT1 WILD-TYPE 79 91 71
'ANGPT1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.837 (Fisher's exact test), Q value = 1

Table S750.  Gene #75: 'ANGPT1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
ANGPT1 MUTATED 3 10 10 6
ANGPT1 WILD-TYPE 22 102 74 43
'C18ORF26 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.146 (Fisher's exact test), Q value = 1

Table S751.  Gene #76: 'C18ORF26 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
C18ORF26 MUTATED 10 2 5
C18ORF26 WILD-TYPE 94 74 94
'C18ORF26 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S752.  Gene #76: 'C18ORF26 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
C18ORF26 MUTATED 4 5 8
C18ORF26 WILD-TYPE 67 95 100
'C18ORF26 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.611 (Fisher's exact test), Q value = 1

Table S753.  Gene #76: 'C18ORF26 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
C18ORF26 MUTATED 6 4 1 3
C18ORF26 WILD-TYPE 41 53 26 35
'C18ORF26 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S754.  Gene #76: 'C18ORF26 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
C18ORF26 MUTATED 3 7 4
C18ORF26 WILD-TYPE 64 52 39
'C18ORF26 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S755.  Gene #76: 'C18ORF26 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
C18ORF26 MUTATED 3 7 7
C18ORF26 WILD-TYPE 90 72 100
'C18ORF26 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S756.  Gene #76: 'C18ORF26 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
C18ORF26 MUTATED 2 10 5
C18ORF26 WILD-TYPE 71 112 79
'C18ORF26 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.893 (Fisher's exact test), Q value = 1

Table S757.  Gene #76: 'C18ORF26 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
C18ORF26 MUTATED 3 8 5
C18ORF26 WILD-TYPE 65 109 80
'C18ORF26 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S758.  Gene #76: 'C18ORF26 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
C18ORF26 MUTATED 0 4 3 9
C18ORF26 WILD-TYPE 29 24 67 134
'C18ORF26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S759.  Gene #76: 'C18ORF26 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
C18ORF26 MUTATED 2 9 5
C18ORF26 WILD-TYPE 86 93 75
'C18ORF26 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S760.  Gene #76: 'C18ORF26 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
C18ORF26 MUTATED 0 8 3 5
C18ORF26 WILD-TYPE 25 104 81 44
'STK31 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S761.  Gene #77: 'STK31 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
STK31 MUTATED 14 5 17
STK31 WILD-TYPE 90 71 82
'STK31 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0261 (Fisher's exact test), Q value = 1

Table S762.  Gene #77: 'STK31 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
STK31 MUTATED 3 15 18
STK31 WILD-TYPE 68 85 90

Figure S37.  Get High-res Image Gene #77: 'STK31 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'STK31 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S763.  Gene #77: 'STK31 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
STK31 MUTATED 6 8 2 9
STK31 WILD-TYPE 41 49 25 29
'STK31 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S764.  Gene #77: 'STK31 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
STK31 MUTATED 10 11 4
STK31 WILD-TYPE 57 48 39
'STK31 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00225 (Fisher's exact test), Q value = 1

Table S765.  Gene #77: 'STK31 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
STK31 MUTATED 4 17 15
STK31 WILD-TYPE 89 62 92

Figure S38.  Get High-res Image Gene #77: 'STK31 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'STK31 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.00516 (Fisher's exact test), Q value = 1

Table S766.  Gene #77: 'STK31 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
STK31 MUTATED 3 24 9
STK31 WILD-TYPE 70 98 75

Figure S39.  Get High-res Image Gene #77: 'STK31 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'STK31 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.308 (Fisher's exact test), Q value = 1

Table S767.  Gene #77: 'STK31 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
STK31 MUTATED 12 14 8
STK31 WILD-TYPE 56 103 77
'STK31 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S768.  Gene #77: 'STK31 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
STK31 MUTATED 4 1 9 20
STK31 WILD-TYPE 25 27 61 123
'STK31 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.72 (Fisher's exact test), Q value = 1

Table S769.  Gene #77: 'STK31 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
STK31 MUTATED 12 14 8
STK31 WILD-TYPE 76 88 72
'STK31 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0275 (Fisher's exact test), Q value = 1

Table S770.  Gene #77: 'STK31 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
STK31 MUTATED 2 20 11 1
STK31 WILD-TYPE 23 92 73 48

Figure S40.  Get High-res Image Gene #77: 'STK31 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'VSNL1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S771.  Gene #78: 'VSNL1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
VSNL1 MUTATED 2 0 2
VSNL1 WILD-TYPE 102 76 97
'VSNL1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.456 (Fisher's exact test), Q value = 1

Table S772.  Gene #78: 'VSNL1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
VSNL1 MUTATED 0 1 3
VSNL1 WILD-TYPE 71 99 105
'VSNL1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.159 (Fisher's exact test), Q value = 1

Table S773.  Gene #78: 'VSNL1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
VSNL1 MUTATED 2 0 1 0
VSNL1 WILD-TYPE 45 57 26 38
'VSNL1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S774.  Gene #78: 'VSNL1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
VSNL1 MUTATED 2 0 1
VSNL1 WILD-TYPE 65 59 42
'VSNL1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.388 (Fisher's exact test), Q value = 1

Table S775.  Gene #78: 'VSNL1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
VSNL1 MUTATED 0 2 2
VSNL1 WILD-TYPE 93 77 105
'VSNL1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S776.  Gene #78: 'VSNL1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
VSNL1 MUTATED 0 2 2
VSNL1 WILD-TYPE 73 120 82
'VSNL1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S777.  Gene #78: 'VSNL1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
VSNL1 MUTATED 2 2 0
VSNL1 WILD-TYPE 66 115 85
'VSNL1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.468 (Fisher's exact test), Q value = 1

Table S778.  Gene #78: 'VSNL1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
VSNL1 MUTATED 1 0 0 3
VSNL1 WILD-TYPE 28 28 70 140
'VSNL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S779.  Gene #78: 'VSNL1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
VSNL1 MUTATED 1 3 0
VSNL1 WILD-TYPE 87 99 80
'VSNL1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.782 (Fisher's exact test), Q value = 1

Table S780.  Gene #78: 'VSNL1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
VSNL1 MUTATED 0 3 1 0
VSNL1 WILD-TYPE 25 109 83 49
'CRB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0361 (Fisher's exact test), Q value = 1

Table S781.  Gene #79: 'CRB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
CRB1 MUTATED 24 7 21
CRB1 WILD-TYPE 80 69 78

Figure S41.  Get High-res Image Gene #79: 'CRB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'CRB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S782.  Gene #79: 'CRB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
CRB1 MUTATED 10 21 21
CRB1 WILD-TYPE 61 79 87
'CRB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.373 (Fisher's exact test), Q value = 1

Table S783.  Gene #79: 'CRB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
CRB1 MUTATED 8 8 8 8
CRB1 WILD-TYPE 39 49 19 30
'CRB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S784.  Gene #79: 'CRB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
CRB1 MUTATED 14 10 8
CRB1 WILD-TYPE 53 49 35
'CRB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0185 (Fisher's exact test), Q value = 1

Table S785.  Gene #79: 'CRB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
CRB1 MUTATED 9 18 25
CRB1 WILD-TYPE 84 61 82

Figure S42.  Get High-res Image Gene #79: 'CRB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'CRB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0151 (Fisher's exact test), Q value = 1

Table S786.  Gene #79: 'CRB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
CRB1 MUTATED 6 25 21
CRB1 WILD-TYPE 67 97 63

Figure S43.  Get High-res Image Gene #79: 'CRB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CRB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S787.  Gene #79: 'CRB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
CRB1 MUTATED 13 26 10
CRB1 WILD-TYPE 55 91 75
'CRB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S788.  Gene #79: 'CRB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
CRB1 MUTATED 3 5 9 32
CRB1 WILD-TYPE 26 23 61 111
'CRB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0386 (Fisher's exact test), Q value = 1

Table S789.  Gene #79: 'CRB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
CRB1 MUTATED 16 25 8
CRB1 WILD-TYPE 72 77 72

Figure S44.  Get High-res Image Gene #79: 'CRB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'CRB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S790.  Gene #79: 'CRB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
CRB1 MUTATED 2 26 11 10
CRB1 WILD-TYPE 23 86 73 39
'PREX2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S791.  Gene #80: 'PREX2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
PREX2 MUTATED 29 15 24
PREX2 WILD-TYPE 75 61 75
'PREX2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00339 (Fisher's exact test), Q value = 1

Table S792.  Gene #80: 'PREX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
PREX2 MUTATED 11 36 21
PREX2 WILD-TYPE 60 64 87

Figure S45.  Get High-res Image Gene #80: 'PREX2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'PREX2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.756 (Fisher's exact test), Q value = 1

Table S793.  Gene #80: 'PREX2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
PREX2 MUTATED 12 12 8 11
PREX2 WILD-TYPE 35 45 19 27
'PREX2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S794.  Gene #80: 'PREX2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
PREX2 MUTATED 20 12 11
PREX2 WILD-TYPE 47 47 32
'PREX2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S795.  Gene #80: 'PREX2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
PREX2 MUTATED 20 26 22
PREX2 WILD-TYPE 73 53 85
'PREX2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S796.  Gene #80: 'PREX2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
PREX2 MUTATED 14 34 20
PREX2 WILD-TYPE 59 88 64
'PREX2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S797.  Gene #80: 'PREX2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
PREX2 MUTATED 18 27 18
PREX2 WILD-TYPE 50 90 67
'PREX2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S798.  Gene #80: 'PREX2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
PREX2 MUTATED 9 7 10 37
PREX2 WILD-TYPE 20 21 60 106
'PREX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S799.  Gene #80: 'PREX2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
PREX2 MUTATED 20 26 17
PREX2 WILD-TYPE 68 76 63
'PREX2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.052 (Fisher's exact test), Q value = 1

Table S800.  Gene #80: 'PREX2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
PREX2 MUTATED 8 33 12 10
PREX2 WILD-TYPE 17 79 72 39
'COPG2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S801.  Gene #81: 'COPG2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
COPG2 MUTATED 3 1 5
COPG2 WILD-TYPE 101 75 94
'COPG2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.476 (Fisher's exact test), Q value = 1

Table S802.  Gene #81: 'COPG2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
COPG2 MUTATED 1 5 3
COPG2 WILD-TYPE 70 95 105
'COPG2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S803.  Gene #81: 'COPG2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
COPG2 MUTATED 2 2 1 0
COPG2 WILD-TYPE 45 55 26 38
'COPG2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S804.  Gene #81: 'COPG2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
COPG2 MUTATED 2 1 2
COPG2 WILD-TYPE 65 58 41
'COPG2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.835 (Fisher's exact test), Q value = 1

Table S805.  Gene #81: 'COPG2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
COPG2 MUTATED 4 2 3
COPG2 WILD-TYPE 89 77 104
'COPG2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.758 (Fisher's exact test), Q value = 1

Table S806.  Gene #81: 'COPG2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
COPG2 MUTATED 3 3 3
COPG2 WILD-TYPE 70 119 81
'COPG2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.428 (Fisher's exact test), Q value = 1

Table S807.  Gene #81: 'COPG2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
COPG2 MUTATED 3 5 1
COPG2 WILD-TYPE 65 112 84
'COPG2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S808.  Gene #81: 'COPG2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
COPG2 MUTATED 0 1 4 4
COPG2 WILD-TYPE 29 27 66 139
'COPG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S809.  Gene #81: 'COPG2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
COPG2 MUTATED 3 5 1
COPG2 WILD-TYPE 85 97 79
'COPG2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S810.  Gene #81: 'COPG2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
COPG2 MUTATED 0 4 4 1
COPG2 WILD-TYPE 25 108 80 48
'SPANXN5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.356 (Fisher's exact test), Q value = 1

Table S811.  Gene #82: 'SPANXN5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
SPANXN5 MUTATED 2 1 5
SPANXN5 WILD-TYPE 102 75 94
'SPANXN5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S812.  Gene #82: 'SPANXN5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
SPANXN5 MUTATED 0 3 5
SPANXN5 WILD-TYPE 71 97 103
'SPANXN5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.375 (Fisher's exact test), Q value = 1

Table S813.  Gene #82: 'SPANXN5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
SPANXN5 MUTATED 2 0 1 1
SPANXN5 WILD-TYPE 45 57 26 37
'SPANXN5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S814.  Gene #82: 'SPANXN5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
SPANXN5 MUTATED 1 1 2
SPANXN5 WILD-TYPE 66 58 41
'SPANXN5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S815.  Gene #82: 'SPANXN5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
SPANXN5 MUTATED 2 3 3
SPANXN5 WILD-TYPE 91 76 104
'SPANXN5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S816.  Gene #82: 'SPANXN5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
SPANXN5 MUTATED 1 5 2
SPANXN5 WILD-TYPE 72 117 82
'SPANXN5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.594 (Fisher's exact test), Q value = 1

Table S817.  Gene #82: 'SPANXN5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
SPANXN5 MUTATED 1 3 4
SPANXN5 WILD-TYPE 67 114 81
'SPANXN5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.897 (Fisher's exact test), Q value = 1

Table S818.  Gene #82: 'SPANXN5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
SPANXN5 MUTATED 0 1 2 5
SPANXN5 WILD-TYPE 29 27 68 138
'SPANXN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.445 (Fisher's exact test), Q value = 1

Table S819.  Gene #82: 'SPANXN5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
SPANXN5 MUTATED 1 4 3
SPANXN5 WILD-TYPE 87 98 77
'SPANXN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.829 (Fisher's exact test), Q value = 1

Table S820.  Gene #82: 'SPANXN5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
SPANXN5 MUTATED 0 4 2 2
SPANXN5 WILD-TYPE 25 108 82 47
'NMS MUTATION STATUS' versus 'CN_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S821.  Gene #83: 'NMS MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
NMS MUTATED 3 3 7
NMS WILD-TYPE 101 73 92
'NMS MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 1

Table S822.  Gene #83: 'NMS MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
NMS MUTATED 1 5 7
NMS WILD-TYPE 70 95 101
'NMS MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S823.  Gene #83: 'NMS MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
NMS MUTATED 4 1 2 3
NMS WILD-TYPE 43 56 25 35
'NMS MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S824.  Gene #83: 'NMS MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
NMS MUTATED 4 4 2
NMS WILD-TYPE 63 55 41
'NMS MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00678 (Fisher's exact test), Q value = 1

Table S825.  Gene #83: 'NMS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
NMS MUTATED 2 9 2
NMS WILD-TYPE 91 70 105

Figure S46.  Get High-res Image Gene #83: 'NMS MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'NMS MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S826.  Gene #83: 'NMS MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
NMS MUTATED 2 8 3
NMS WILD-TYPE 71 114 81
'NMS MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.878 (Fisher's exact test), Q value = 1

Table S827.  Gene #83: 'NMS MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
NMS MUTATED 3 5 5
NMS WILD-TYPE 65 112 80
'NMS MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S828.  Gene #83: 'NMS MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
NMS MUTATED 1 0 3 9
NMS WILD-TYPE 28 28 67 134
'NMS MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S829.  Gene #83: 'NMS MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
NMS MUTATED 5 5 3
NMS WILD-TYPE 83 97 77
'NMS MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.901 (Fisher's exact test), Q value = 1

Table S830.  Gene #83: 'NMS MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
NMS MUTATED 1 7 3 2
NMS WILD-TYPE 24 105 81 47
'RERG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S831.  Gene #84: 'RERG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
RERG MUTATED 6 1 4
RERG WILD-TYPE 98 75 95
'RERG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S832.  Gene #84: 'RERG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
RERG MUTATED 2 4 5
RERG WILD-TYPE 69 96 103
'RERG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.668 (Fisher's exact test), Q value = 1

Table S833.  Gene #84: 'RERG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
RERG MUTATED 1 3 1 3
RERG WILD-TYPE 46 54 26 35
'RERG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.197 (Fisher's exact test), Q value = 1

Table S834.  Gene #84: 'RERG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
RERG MUTATED 5 3 0
RERG WILD-TYPE 62 56 43
'RERG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.741 (Fisher's exact test), Q value = 1

Table S835.  Gene #84: 'RERG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
RERG MUTATED 4 4 3
RERG WILD-TYPE 89 75 104
'RERG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.679 (Fisher's exact test), Q value = 1

Table S836.  Gene #84: 'RERG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
RERG MUTATED 3 6 2
RERG WILD-TYPE 70 116 82
'RERG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.055 (Fisher's exact test), Q value = 1

Table S837.  Gene #84: 'RERG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
RERG MUTATED 0 8 3
RERG WILD-TYPE 68 109 82
'RERG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S838.  Gene #84: 'RERG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
RERG MUTATED 0 1 2 8
RERG WILD-TYPE 29 27 68 135
'RERG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S839.  Gene #84: 'RERG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
RERG MUTATED 1 7 3
RERG WILD-TYPE 87 95 77
'RERG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S840.  Gene #84: 'RERG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
RERG MUTATED 0 8 3 0
RERG WILD-TYPE 25 104 81 49
'GLYATL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.108 (Fisher's exact test), Q value = 1

Table S841.  Gene #85: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
GLYATL2 MUTATED 5 7 13
GLYATL2 WILD-TYPE 99 69 86
'GLYATL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0786 (Fisher's exact test), Q value = 1

Table S842.  Gene #85: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
GLYATL2 MUTATED 2 12 11
GLYATL2 WILD-TYPE 69 88 97
'GLYATL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S843.  Gene #85: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
GLYATL2 MUTATED 5 4 2 2
GLYATL2 WILD-TYPE 42 53 25 36
'GLYATL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S844.  Gene #85: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
GLYATL2 MUTATED 4 7 2
GLYATL2 WILD-TYPE 63 52 41
'GLYATL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.156 (Fisher's exact test), Q value = 1

Table S845.  Gene #85: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
GLYATL2 MUTATED 8 11 6
GLYATL2 WILD-TYPE 85 68 101
'GLYATL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S846.  Gene #85: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
GLYATL2 MUTATED 6 15 4
GLYATL2 WILD-TYPE 67 107 80
'GLYATL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.296 (Fisher's exact test), Q value = 1

Table S847.  Gene #85: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
GLYATL2 MUTATED 9 8 6
GLYATL2 WILD-TYPE 59 109 79
'GLYATL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.704 (Fisher's exact test), Q value = 1

Table S848.  Gene #85: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
GLYATL2 MUTATED 2 1 8 12
GLYATL2 WILD-TYPE 27 27 62 131
'GLYATL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0991 (Fisher's exact test), Q value = 1

Table S849.  Gene #85: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
GLYATL2 MUTATED 12 5 6
GLYATL2 WILD-TYPE 76 97 74
'GLYATL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.624 (Fisher's exact test), Q value = 1

Table S850.  Gene #85: 'GLYATL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
GLYATL2 MUTATED 2 8 10 3
GLYATL2 WILD-TYPE 23 104 74 46
'POTEG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0966 (Fisher's exact test), Q value = 1

Table S851.  Gene #86: 'POTEG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
POTEG MUTATED 16 4 11
POTEG WILD-TYPE 88 72 88
'POTEG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.03 (Fisher's exact test), Q value = 1

Table S852.  Gene #86: 'POTEG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
POTEG MUTATED 8 17 6
POTEG WILD-TYPE 63 83 102

Figure S47.  Get High-res Image Gene #86: 'POTEG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'POTEG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S853.  Gene #86: 'POTEG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
POTEG MUTATED 3 5 2 7
POTEG WILD-TYPE 44 52 25 31
'POTEG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S854.  Gene #86: 'POTEG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
POTEG MUTATED 4 9 4
POTEG WILD-TYPE 63 50 39
'POTEG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S855.  Gene #86: 'POTEG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
POTEG MUTATED 10 6 15
POTEG WILD-TYPE 83 73 92
'POTEG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.115 (Fisher's exact test), Q value = 1

Table S856.  Gene #86: 'POTEG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
POTEG MUTATED 8 9 14
POTEG WILD-TYPE 65 113 70
'POTEG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.196 (Fisher's exact test), Q value = 1

Table S857.  Gene #86: 'POTEG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
POTEG MUTATED 4 17 9
POTEG WILD-TYPE 64 100 76
'POTEG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S858.  Gene #86: 'POTEG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
POTEG MUTATED 1 2 6 21
POTEG WILD-TYPE 28 26 64 122
'POTEG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0855 (Fisher's exact test), Q value = 1

Table S859.  Gene #86: 'POTEG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
POTEG MUTATED 5 16 9
POTEG WILD-TYPE 83 86 71
'POTEG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S860.  Gene #86: 'POTEG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
POTEG MUTATED 1 16 7 6
POTEG WILD-TYPE 24 96 77 43
'AREG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S861.  Gene #87: 'AREG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
AREG MUTATED 3 1 3
AREG WILD-TYPE 101 75 96
'AREG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S862.  Gene #87: 'AREG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
AREG MUTATED 2 2 3
AREG WILD-TYPE 69 98 105
'AREG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.713 (Fisher's exact test), Q value = 1

Table S863.  Gene #87: 'AREG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
AREG MUTATED 1 1 1 2
AREG WILD-TYPE 46 56 26 36
'AREG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S864.  Gene #87: 'AREG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
AREG MUTATED 2 2 1
AREG WILD-TYPE 65 57 42
'AREG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.892 (Fisher's exact test), Q value = 1

Table S865.  Gene #87: 'AREG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
AREG MUTATED 3 2 2
AREG WILD-TYPE 90 77 105
'AREG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.158 (Fisher's exact test), Q value = 1

Table S866.  Gene #87: 'AREG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
AREG MUTATED 3 4 0
AREG WILD-TYPE 70 118 84
'AREG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S867.  Gene #87: 'AREG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
AREG MUTATED 1 3 3
AREG WILD-TYPE 67 114 82
'AREG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.501 (Fisher's exact test), Q value = 1

Table S868.  Gene #87: 'AREG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
AREG MUTATED 0 1 3 3
AREG WILD-TYPE 29 27 67 140
'AREG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S869.  Gene #87: 'AREG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
AREG MUTATED 3 1 3
AREG WILD-TYPE 85 101 77
'AREG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S870.  Gene #87: 'AREG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
AREG MUTATED 0 3 3 1
AREG WILD-TYPE 25 109 81 48
'ACD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.173 (Fisher's exact test), Q value = 1

Table S871.  Gene #88: 'ACD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
ACD MUTATED 1 4 5
ACD WILD-TYPE 103 72 94
'ACD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S872.  Gene #88: 'ACD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
ACD MUTATED 3 3 4
ACD WILD-TYPE 68 97 104
'ACD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S873.  Gene #88: 'ACD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
ACD MUTATED 3 3 1 1
ACD WILD-TYPE 44 54 26 37
'ACD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S874.  Gene #88: 'ACD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
ACD MUTATED 2 5 1
ACD WILD-TYPE 65 54 42
'ACD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S875.  Gene #88: 'ACD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
ACD MUTATED 5 2 3
ACD WILD-TYPE 88 77 104
'ACD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S876.  Gene #88: 'ACD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
ACD MUTATED 5 4 1
ACD WILD-TYPE 68 118 83
'ACD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.167 (Fisher's exact test), Q value = 1

Table S877.  Gene #88: 'ACD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
ACD MUTATED 5 2 3
ACD WILD-TYPE 63 115 82
'ACD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S878.  Gene #88: 'ACD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
ACD MUTATED 0 0 6 4
ACD WILD-TYPE 29 28 64 139
'ACD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.92 (Fisher's exact test), Q value = 1

Table S879.  Gene #88: 'ACD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
ACD MUTATED 4 3 3
ACD WILD-TYPE 84 99 77
'ACD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S880.  Gene #88: 'ACD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
ACD MUTATED 0 4 6 0
ACD WILD-TYPE 25 108 78 49
'STARD6 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S881.  Gene #89: 'STARD6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
STARD6 MUTATED 5 3 4
STARD6 WILD-TYPE 99 73 95
'STARD6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S882.  Gene #89: 'STARD6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
STARD6 MUTATED 1 7 4
STARD6 WILD-TYPE 70 93 104
'STARD6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.415 (Fisher's exact test), Q value = 1

Table S883.  Gene #89: 'STARD6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
STARD6 MUTATED 2 1 2 3
STARD6 WILD-TYPE 45 56 25 35
'STARD6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S884.  Gene #89: 'STARD6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
STARD6 MUTATED 3 3 2
STARD6 WILD-TYPE 64 56 41
'STARD6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S885.  Gene #89: 'STARD6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
STARD6 MUTATED 3 5 4
STARD6 WILD-TYPE 90 74 103
'STARD6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S886.  Gene #89: 'STARD6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
STARD6 MUTATED 4 6 2
STARD6 WILD-TYPE 69 116 82
'STARD6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S887.  Gene #89: 'STARD6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
STARD6 MUTATED 4 3 5
STARD6 WILD-TYPE 64 114 80
'STARD6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.086 (Fisher's exact test), Q value = 1

Table S888.  Gene #89: 'STARD6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
STARD6 MUTATED 1 0 7 4
STARD6 WILD-TYPE 28 28 63 139
'STARD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S889.  Gene #89: 'STARD6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
STARD6 MUTATED 7 2 3
STARD6 WILD-TYPE 81 100 77
'STARD6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S890.  Gene #89: 'STARD6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
STARD6 MUTATED 1 4 7 0
STARD6 WILD-TYPE 24 108 77 49
'FAM58A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S891.  Gene #90: 'FAM58A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
FAM58A MUTATED 2 0 3
FAM58A WILD-TYPE 102 76 96
'FAM58A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S892.  Gene #90: 'FAM58A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
FAM58A MUTATED 1 1 3
FAM58A WILD-TYPE 70 99 105
'FAM58A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.913 (Fisher's exact test), Q value = 1

Table S893.  Gene #90: 'FAM58A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
FAM58A MUTATED 1 1 1 1
FAM58A WILD-TYPE 46 56 26 37
'FAM58A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S894.  Gene #90: 'FAM58A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
FAM58A MUTATED 3 1 0
FAM58A WILD-TYPE 64 58 43
'FAM58A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S895.  Gene #90: 'FAM58A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
FAM58A MUTATED 0 3 2
FAM58A WILD-TYPE 93 76 105
'FAM58A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S896.  Gene #90: 'FAM58A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
FAM58A MUTATED 0 3 2
FAM58A WILD-TYPE 73 119 82
'FAM58A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S897.  Gene #90: 'FAM58A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
FAM58A MUTATED 1 2 2
FAM58A WILD-TYPE 67 115 83
'FAM58A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.331 (Fisher's exact test), Q value = 1

Table S898.  Gene #90: 'FAM58A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
FAM58A MUTATED 0 0 0 5
FAM58A WILD-TYPE 29 28 70 138
'FAM58A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.195 (Fisher's exact test), Q value = 1

Table S899.  Gene #90: 'FAM58A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
FAM58A MUTATED 1 4 0
FAM58A WILD-TYPE 87 98 80
'FAM58A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S900.  Gene #90: 'FAM58A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
FAM58A MUTATED 0 4 0 1
FAM58A WILD-TYPE 25 108 84 48
'CDK4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.797 (Fisher's exact test), Q value = 1

Table S901.  Gene #91: 'CDK4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
CDK4 MUTATED 3 1 3
CDK4 WILD-TYPE 101 75 96
'CDK4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.437 (Fisher's exact test), Q value = 1

Table S902.  Gene #91: 'CDK4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
CDK4 MUTATED 3 1 3
CDK4 WILD-TYPE 68 99 105
'CDK4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0469 (Fisher's exact test), Q value = 1

Table S903.  Gene #91: 'CDK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
CDK4 MUTATED 2 0 2 0
CDK4 WILD-TYPE 45 57 25 38

Figure S48.  Get High-res Image Gene #91: 'CDK4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CDK4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S904.  Gene #91: 'CDK4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
CDK4 MUTATED 1 1 2
CDK4 WILD-TYPE 66 58 41
'CDK4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S905.  Gene #91: 'CDK4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
CDK4 MUTATED 2 2 3
CDK4 WILD-TYPE 91 77 104
'CDK4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S906.  Gene #91: 'CDK4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
CDK4 MUTATED 2 2 3
CDK4 WILD-TYPE 71 120 81
'CDK4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.386 (Fisher's exact test), Q value = 1

Table S907.  Gene #91: 'CDK4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
CDK4 MUTATED 2 1 3
CDK4 WILD-TYPE 66 116 82
'CDK4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S908.  Gene #91: 'CDK4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
CDK4 MUTATED 1 0 3 2
CDK4 WILD-TYPE 28 28 67 141
'CDK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S909.  Gene #91: 'CDK4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
CDK4 MUTATED 2 2 2
CDK4 WILD-TYPE 86 100 78
'CDK4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S910.  Gene #91: 'CDK4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
CDK4 MUTATED 1 1 3 1
CDK4 WILD-TYPE 24 111 81 48
'PRSS48 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0784 (Fisher's exact test), Q value = 1

Table S911.  Gene #92: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
PRSS48 MUTATED 5 0 1
PRSS48 WILD-TYPE 99 76 98
'PRSS48 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S912.  Gene #92: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
PRSS48 MUTATED 2 3 1
PRSS48 WILD-TYPE 69 97 107
'PRSS48 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.342 (Fisher's exact test), Q value = 1

Table S913.  Gene #92: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
PRSS48 MUTATED 0 1 1 2
PRSS48 WILD-TYPE 47 56 26 36
'PRSS48 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S914.  Gene #92: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
PRSS48 MUTATED 3 0 1
PRSS48 WILD-TYPE 64 59 42
'PRSS48 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00459 (Fisher's exact test), Q value = 1

Table S915.  Gene #92: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
PRSS48 MUTATED 0 0 6
PRSS48 WILD-TYPE 93 79 101

Figure S49.  Get High-res Image Gene #92: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PRSS48 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0156 (Fisher's exact test), Q value = 1

Table S916.  Gene #92: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
PRSS48 MUTATED 0 1 5
PRSS48 WILD-TYPE 73 121 79

Figure S50.  Get High-res Image Gene #92: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'PRSS48 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S917.  Gene #92: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
PRSS48 MUTATED 1 4 1
PRSS48 WILD-TYPE 67 113 84
'PRSS48 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.724 (Fisher's exact test), Q value = 1

Table S918.  Gene #92: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
PRSS48 MUTATED 0 0 1 5
PRSS48 WILD-TYPE 29 28 69 138
'PRSS48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0667 (Fisher's exact test), Q value = 1

Table S919.  Gene #92: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
PRSS48 MUTATED 1 5 0
PRSS48 WILD-TYPE 87 97 80
'PRSS48 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.226 (Fisher's exact test), Q value = 1

Table S920.  Gene #92: 'PRSS48 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
PRSS48 MUTATED 0 4 0 2
PRSS48 WILD-TYPE 25 108 84 47
'TBC1D3B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.381 (Fisher's exact test), Q value = 1

Table S921.  Gene #93: 'TBC1D3B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
TBC1D3B MUTATED 2 0 3
TBC1D3B WILD-TYPE 102 76 96
'TBC1D3B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.851 (Fisher's exact test), Q value = 1

Table S922.  Gene #93: 'TBC1D3B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
TBC1D3B MUTATED 1 1 3
TBC1D3B WILD-TYPE 70 99 105
'TBC1D3B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S923.  Gene #93: 'TBC1D3B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
TBC1D3B MUTATED 2 0 0 2
TBC1D3B WILD-TYPE 45 57 27 36
'TBC1D3B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S924.  Gene #93: 'TBC1D3B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
TBC1D3B MUTATED 0 2 2
TBC1D3B WILD-TYPE 67 57 41
'TBC1D3B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.859 (Fisher's exact test), Q value = 1

Table S925.  Gene #93: 'TBC1D3B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
TBC1D3B MUTATED 1 2 2
TBC1D3B WILD-TYPE 92 77 105
'TBC1D3B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S926.  Gene #93: 'TBC1D3B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
TBC1D3B MUTATED 1 3 1
TBC1D3B WILD-TYPE 72 119 83
'TBC1D3B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S927.  Gene #93: 'TBC1D3B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
TBC1D3B MUTATED 1 3 1
TBC1D3B WILD-TYPE 67 114 84
'TBC1D3B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S928.  Gene #93: 'TBC1D3B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
TBC1D3B MUTATED 1 0 1 3
TBC1D3B WILD-TYPE 28 28 69 140
'TBC1D3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.863 (Fisher's exact test), Q value = 1

Table S929.  Gene #93: 'TBC1D3B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
TBC1D3B MUTATED 1 2 2
TBC1D3B WILD-TYPE 87 100 78
'TBC1D3B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.757 (Fisher's exact test), Q value = 1

Table S930.  Gene #93: 'TBC1D3B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
TBC1D3B MUTATED 1 2 1 1
TBC1D3B WILD-TYPE 24 110 83 48
'COL4A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S931.  Gene #94: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
COL4A4 MUTATED 27 14 31
COL4A4 WILD-TYPE 77 62 68
'COL4A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S932.  Gene #94: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
COL4A4 MUTATED 12 28 32
COL4A4 WILD-TYPE 59 72 76
'COL4A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S933.  Gene #94: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
COL4A4 MUTATED 14 12 6 11
COL4A4 WILD-TYPE 33 45 21 27
'COL4A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.535 (Fisher's exact test), Q value = 1

Table S934.  Gene #94: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
COL4A4 MUTATED 16 18 9
COL4A4 WILD-TYPE 51 41 34
'COL4A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0794 (Fisher's exact test), Q value = 1

Table S935.  Gene #94: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
COL4A4 MUTATED 20 28 24
COL4A4 WILD-TYPE 73 51 83
'COL4A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0168 (Fisher's exact test), Q value = 1

Table S936.  Gene #94: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
COL4A4 MUTATED 14 42 16
COL4A4 WILD-TYPE 59 80 68

Figure S51.  Get High-res Image Gene #94: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'COL4A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.249 (Fisher's exact test), Q value = 1

Table S937.  Gene #94: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
COL4A4 MUTATED 21 33 17
COL4A4 WILD-TYPE 47 84 68
'COL4A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.877 (Fisher's exact test), Q value = 1

Table S938.  Gene #94: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
COL4A4 MUTATED 8 7 16 40
COL4A4 WILD-TYPE 21 21 54 103
'COL4A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S939.  Gene #94: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
COL4A4 MUTATED 25 30 16
COL4A4 WILD-TYPE 63 72 64
'COL4A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.181 (Fisher's exact test), Q value = 1

Table S940.  Gene #94: 'COL4A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
COL4A4 MUTATED 5 36 22 8
COL4A4 WILD-TYPE 20 76 62 41
'LPAR1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S941.  Gene #95: 'LPAR1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
LPAR1 MUTATED 6 1 6
LPAR1 WILD-TYPE 98 75 93
'LPAR1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0647 (Fisher's exact test), Q value = 1

Table S942.  Gene #95: 'LPAR1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
LPAR1 MUTATED 0 6 7
LPAR1 WILD-TYPE 71 94 101
'LPAR1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S943.  Gene #95: 'LPAR1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
LPAR1 MUTATED 2 4 2 1
LPAR1 WILD-TYPE 45 53 25 37
'LPAR1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.465 (Fisher's exact test), Q value = 1

Table S944.  Gene #95: 'LPAR1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
LPAR1 MUTATED 3 5 1
LPAR1 WILD-TYPE 64 54 42
'LPAR1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.103 (Fisher's exact test), Q value = 1

Table S945.  Gene #95: 'LPAR1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
LPAR1 MUTATED 1 5 7
LPAR1 WILD-TYPE 92 74 100
'LPAR1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S946.  Gene #95: 'LPAR1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
LPAR1 MUTATED 1 7 5
LPAR1 WILD-TYPE 72 115 79
'LPAR1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.808 (Fisher's exact test), Q value = 1

Table S947.  Gene #95: 'LPAR1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
LPAR1 MUTATED 4 5 3
LPAR1 WILD-TYPE 64 112 82
'LPAR1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.494 (Fisher's exact test), Q value = 1

Table S948.  Gene #95: 'LPAR1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
LPAR1 MUTATED 2 0 2 8
LPAR1 WILD-TYPE 27 28 68 135
'LPAR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.574 (Fisher's exact test), Q value = 1

Table S949.  Gene #95: 'LPAR1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
LPAR1 MUTATED 4 6 2
LPAR1 WILD-TYPE 84 96 78
'LPAR1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S950.  Gene #95: 'LPAR1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
LPAR1 MUTATED 2 6 2 2
LPAR1 WILD-TYPE 23 106 82 47
'GNAI2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S951.  Gene #96: 'GNAI2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
GNAI2 MUTATED 3 1 1
GNAI2 WILD-TYPE 101 75 98
'GNAI2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S952.  Gene #96: 'GNAI2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
GNAI2 MUTATED 1 3 1
GNAI2 WILD-TYPE 70 97 107
'GNAI2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S953.  Gene #96: 'GNAI2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
GNAI2 MUTATED 2 0 0 1
GNAI2 WILD-TYPE 45 57 27 37
'GNAI2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S954.  Gene #96: 'GNAI2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
GNAI2 MUTATED 1 2 0
GNAI2 WILD-TYPE 66 57 43
'GNAI2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S955.  Gene #96: 'GNAI2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
GNAI2 MUTATED 2 1 2
GNAI2 WILD-TYPE 91 78 105
'GNAI2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.729 (Fisher's exact test), Q value = 1

Table S956.  Gene #96: 'GNAI2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
GNAI2 MUTATED 2 2 1
GNAI2 WILD-TYPE 71 120 83
'GNAI2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S957.  Gene #96: 'GNAI2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
GNAI2 MUTATED 2 1 2
GNAI2 WILD-TYPE 66 116 83
'GNAI2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S958.  Gene #96: 'GNAI2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
GNAI2 MUTATED 0 0 3 2
GNAI2 WILD-TYPE 29 28 67 141
'GNAI2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.163 (Fisher's exact test), Q value = 1

Table S959.  Gene #96: 'GNAI2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
GNAI2 MUTATED 3 0 2
GNAI2 WILD-TYPE 85 102 78
'GNAI2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.649 (Fisher's exact test), Q value = 1

Table S960.  Gene #96: 'GNAI2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
GNAI2 MUTATED 0 2 3 0
GNAI2 WILD-TYPE 25 110 81 49
'RPGRIP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0104 (Fisher's exact test), Q value = 1

Table S961.  Gene #97: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
RPGRIP1 MUTATED 13 1 11
RPGRIP1 WILD-TYPE 91 75 88

Figure S52.  Get High-res Image Gene #97: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'RPGRIP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S962.  Gene #97: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
RPGRIP1 MUTATED 8 9 8
RPGRIP1 WILD-TYPE 63 91 100
'RPGRIP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.351 (Fisher's exact test), Q value = 1

Table S963.  Gene #97: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
RPGRIP1 MUTATED 6 4 3 1
RPGRIP1 WILD-TYPE 41 53 24 37
'RPGRIP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.448 (Fisher's exact test), Q value = 1

Table S964.  Gene #97: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
RPGRIP1 MUTATED 6 3 5
RPGRIP1 WILD-TYPE 61 56 38
'RPGRIP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.055 (Fisher's exact test), Q value = 1

Table S965.  Gene #97: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
RPGRIP1 MUTATED 4 6 15
RPGRIP1 WILD-TYPE 89 73 92
'RPGRIP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0394 (Fisher's exact test), Q value = 1

Table S966.  Gene #97: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
RPGRIP1 MUTATED 3 9 13
RPGRIP1 WILD-TYPE 70 113 71

Figure S53.  Get High-res Image Gene #97: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'RPGRIP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.239 (Fisher's exact test), Q value = 1

Table S967.  Gene #97: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
RPGRIP1 MUTATED 4 15 6
RPGRIP1 WILD-TYPE 64 102 79
'RPGRIP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.166 (Fisher's exact test), Q value = 1

Table S968.  Gene #97: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
RPGRIP1 MUTATED 1 1 4 19
RPGRIP1 WILD-TYPE 28 27 66 124
'RPGRIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0678 (Fisher's exact test), Q value = 1

Table S969.  Gene #97: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
RPGRIP1 MUTATED 5 15 5
RPGRIP1 WILD-TYPE 83 87 75
'RPGRIP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0313 (Fisher's exact test), Q value = 1

Table S970.  Gene #97: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
RPGRIP1 MUTATED 0 17 4 4
RPGRIP1 WILD-TYPE 25 95 80 45

Figure S54.  Get High-res Image Gene #97: 'RPGRIP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PTPRT MUTATION STATUS' versus 'CN_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S971.  Gene #98: 'PTPRT MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
PTPRT MUTATED 32 18 31
PTPRT WILD-TYPE 72 58 68
'PTPRT MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0858 (Fisher's exact test), Q value = 1

Table S972.  Gene #98: 'PTPRT MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
PTPRT MUTATED 16 37 28
PTPRT WILD-TYPE 55 63 80
'PTPRT MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S973.  Gene #98: 'PTPRT MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
PTPRT MUTATED 14 21 5 12
PTPRT WILD-TYPE 33 36 22 26
'PTPRT MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S974.  Gene #98: 'PTPRT MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
PTPRT MUTATED 21 21 10
PTPRT WILD-TYPE 46 38 33
'PTPRT MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S975.  Gene #98: 'PTPRT MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
PTPRT MUTATED 25 25 31
PTPRT WILD-TYPE 68 54 76
'PTPRT MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S976.  Gene #98: 'PTPRT MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
PTPRT MUTATED 21 39 21
PTPRT WILD-TYPE 52 83 63
'PTPRT MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.25 (Fisher's exact test), Q value = 1

Table S977.  Gene #98: 'PTPRT MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
PTPRT MUTATED 19 40 20
PTPRT WILD-TYPE 49 77 65
'PTPRT MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S978.  Gene #98: 'PTPRT MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
PTPRT MUTATED 7 10 17 45
PTPRT WILD-TYPE 22 18 53 98
'PTPRT MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S979.  Gene #98: 'PTPRT MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
PTPRT MUTATED 27 34 18
PTPRT WILD-TYPE 61 68 62
'PTPRT MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0372 (Fisher's exact test), Q value = 1

Table S980.  Gene #98: 'PTPRT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
PTPRT MUTATED 5 43 22 9
PTPRT WILD-TYPE 20 69 62 40

Figure S55.  Get High-res Image Gene #98: 'PTPRT MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'PDE1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S981.  Gene #99: 'PDE1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
PDE1A MUTATED 15 6 18
PDE1A WILD-TYPE 89 70 81
'PDE1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S982.  Gene #99: 'PDE1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
PDE1A MUTATED 8 17 14
PDE1A WILD-TYPE 63 83 94
'PDE1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S983.  Gene #99: 'PDE1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
PDE1A MUTATED 7 8 6 7
PDE1A WILD-TYPE 40 49 21 31
'PDE1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.731 (Fisher's exact test), Q value = 1

Table S984.  Gene #99: 'PDE1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
PDE1A MUTATED 12 8 8
PDE1A WILD-TYPE 55 51 35
'PDE1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0253 (Fisher's exact test), Q value = 1

Table S985.  Gene #99: 'PDE1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
PDE1A MUTATED 6 15 18
PDE1A WILD-TYPE 87 64 89

Figure S56.  Get High-res Image Gene #99: 'PDE1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'PDE1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S986.  Gene #99: 'PDE1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
PDE1A MUTATED 5 20 14
PDE1A WILD-TYPE 68 102 70
'PDE1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S987.  Gene #99: 'PDE1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
PDE1A MUTATED 8 20 10
PDE1A WILD-TYPE 60 97 75
'PDE1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S988.  Gene #99: 'PDE1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
PDE1A MUTATED 4 5 5 24
PDE1A WILD-TYPE 25 23 65 119
'PDE1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0681 (Fisher's exact test), Q value = 1

Table S989.  Gene #99: 'PDE1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
PDE1A MUTATED 7 20 11
PDE1A WILD-TYPE 81 82 69
'PDE1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 1

Table S990.  Gene #99: 'PDE1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
PDE1A MUTATED 4 20 7 7
PDE1A WILD-TYPE 21 92 77 42
'KIAA2022 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S991.  Gene #100: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
KIAA2022 MUTATED 18 13 23
KIAA2022 WILD-TYPE 86 63 76
'KIAA2022 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S992.  Gene #100: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
KIAA2022 MUTATED 9 25 20
KIAA2022 WILD-TYPE 62 75 88
'KIAA2022 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.45 (Fisher's exact test), Q value = 1

Table S993.  Gene #100: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
KIAA2022 MUTATED 7 8 5 10
KIAA2022 WILD-TYPE 40 49 22 28
'KIAA2022 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S994.  Gene #100: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
KIAA2022 MUTATED 13 12 5
KIAA2022 WILD-TYPE 54 47 38
'KIAA2022 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S995.  Gene #100: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
KIAA2022 MUTATED 14 20 20
KIAA2022 WILD-TYPE 79 59 87
'KIAA2022 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S996.  Gene #100: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
KIAA2022 MUTATED 11 24 19
KIAA2022 WILD-TYPE 62 98 65
'KIAA2022 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.662 (Fisher's exact test), Q value = 1

Table S997.  Gene #100: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
KIAA2022 MUTATED 12 25 14
KIAA2022 WILD-TYPE 56 92 71
'KIAA2022 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.346 (Fisher's exact test), Q value = 1

Table S998.  Gene #100: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
KIAA2022 MUTATED 7 3 10 31
KIAA2022 WILD-TYPE 22 25 60 112
'KIAA2022 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S999.  Gene #100: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
KIAA2022 MUTATED 16 24 11
KIAA2022 WILD-TYPE 72 78 69
'KIAA2022 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0135 (Fisher's exact test), Q value = 1

Table S1000.  Gene #100: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
KIAA2022 MUTATED 6 30 11 4
KIAA2022 WILD-TYPE 19 82 73 45

Figure S57.  Get High-res Image Gene #100: 'KIAA2022 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'HRNR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.292 (Fisher's exact test), Q value = 1

Table S1001.  Gene #101: 'HRNR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
HRNR MUTATED 25 11 20
HRNR WILD-TYPE 79 65 79
'HRNR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.215 (Fisher's exact test), Q value = 1

Table S1002.  Gene #101: 'HRNR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
HRNR MUTATED 10 25 21
HRNR WILD-TYPE 61 75 87
'HRNR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.687 (Fisher's exact test), Q value = 1

Table S1003.  Gene #101: 'HRNR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
HRNR MUTATED 8 12 7 10
HRNR WILD-TYPE 39 45 20 28
'HRNR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.573 (Fisher's exact test), Q value = 1

Table S1004.  Gene #101: 'HRNR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
HRNR MUTATED 12 15 10
HRNR WILD-TYPE 55 44 33
'HRNR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.345 (Fisher's exact test), Q value = 1

Table S1005.  Gene #101: 'HRNR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
HRNR MUTATED 15 15 26
HRNR WILD-TYPE 78 64 81
'HRNR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.305 (Fisher's exact test), Q value = 1

Table S1006.  Gene #101: 'HRNR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
HRNR MUTATED 11 24 21
HRNR WILD-TYPE 62 98 63
'HRNR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.19 (Fisher's exact test), Q value = 1

Table S1007.  Gene #101: 'HRNR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
HRNR MUTATED 17 26 12
HRNR WILD-TYPE 51 91 73
'HRNR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S1008.  Gene #101: 'HRNR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
HRNR MUTATED 7 3 12 33
HRNR WILD-TYPE 22 25 58 110
'HRNR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.367 (Fisher's exact test), Q value = 1

Table S1009.  Gene #101: 'HRNR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
HRNR MUTATED 20 23 12
HRNR WILD-TYPE 68 79 68
'HRNR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S1010.  Gene #101: 'HRNR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
HRNR MUTATED 5 28 15 7
HRNR WILD-TYPE 20 84 69 42
'EIF3D MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1011.  Gene #102: 'EIF3D MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
EIF3D MUTATED 2 1 1
EIF3D WILD-TYPE 102 75 98
'EIF3D MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.834 (Fisher's exact test), Q value = 1

Table S1012.  Gene #102: 'EIF3D MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
EIF3D MUTATED 1 2 1
EIF3D WILD-TYPE 70 98 107
'EIF3D MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S1013.  Gene #102: 'EIF3D MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
EIF3D MUTATED 0 1 0 2
EIF3D WILD-TYPE 47 56 27 36
'EIF3D MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S1014.  Gene #102: 'EIF3D MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
EIF3D MUTATED 1 2 0
EIF3D WILD-TYPE 66 57 43
'EIF3D MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1015.  Gene #102: 'EIF3D MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
EIF3D MUTATED 1 1 2
EIF3D WILD-TYPE 92 78 105
'EIF3D MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.817 (Fisher's exact test), Q value = 1

Table S1016.  Gene #102: 'EIF3D MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
EIF3D MUTATED 1 1 2
EIF3D WILD-TYPE 72 121 82
'EIF3D MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.471 (Fisher's exact test), Q value = 1

Table S1017.  Gene #102: 'EIF3D MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
EIF3D MUTATED 0 3 1
EIF3D WILD-TYPE 68 114 84
'EIF3D MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.545 (Fisher's exact test), Q value = 1

Table S1018.  Gene #102: 'EIF3D MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
EIF3D MUTATED 0 0 0 4
EIF3D WILD-TYPE 29 28 70 139
'EIF3D MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.321 (Fisher's exact test), Q value = 1

Table S1019.  Gene #102: 'EIF3D MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
EIF3D MUTATED 0 3 1
EIF3D WILD-TYPE 88 99 79
'EIF3D MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S1020.  Gene #102: 'EIF3D MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
EIF3D MUTATED 0 3 0 1
EIF3D WILD-TYPE 25 109 84 48
'SLC15A2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.529 (Fisher's exact test), Q value = 1

Table S1021.  Gene #103: 'SLC15A2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
SLC15A2 MUTATED 13 6 13
SLC15A2 WILD-TYPE 91 70 86
'SLC15A2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S1022.  Gene #103: 'SLC15A2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
SLC15A2 MUTATED 6 14 12
SLC15A2 WILD-TYPE 65 86 96
'SLC15A2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S1023.  Gene #103: 'SLC15A2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
SLC15A2 MUTATED 7 6 5 5
SLC15A2 WILD-TYPE 40 51 22 33
'SLC15A2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.93 (Fisher's exact test), Q value = 1

Table S1024.  Gene #103: 'SLC15A2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
SLC15A2 MUTATED 10 8 5
SLC15A2 WILD-TYPE 57 51 38
'SLC15A2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.555 (Fisher's exact test), Q value = 1

Table S1025.  Gene #103: 'SLC15A2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
SLC15A2 MUTATED 8 10 14
SLC15A2 WILD-TYPE 85 69 93
'SLC15A2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.491 (Fisher's exact test), Q value = 1

Table S1026.  Gene #103: 'SLC15A2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
SLC15A2 MUTATED 6 14 12
SLC15A2 WILD-TYPE 67 108 72
'SLC15A2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S1027.  Gene #103: 'SLC15A2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
SLC15A2 MUTATED 7 16 8
SLC15A2 WILD-TYPE 61 101 77
'SLC15A2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S1028.  Gene #103: 'SLC15A2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
SLC15A2 MUTATED 3 2 5 21
SLC15A2 WILD-TYPE 26 26 65 122
'SLC15A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S1029.  Gene #103: 'SLC15A2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
SLC15A2 MUTATED 10 14 7
SLC15A2 WILD-TYPE 78 88 73
'SLC15A2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.262 (Fisher's exact test), Q value = 1

Table S1030.  Gene #103: 'SLC15A2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
SLC15A2 MUTATED 1 18 7 5
SLC15A2 WILD-TYPE 24 94 77 44
'ST6GAL2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S1031.  Gene #104: 'ST6GAL2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
ST6GAL2 MUTATED 13 11 18
ST6GAL2 WILD-TYPE 91 65 81
'ST6GAL2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S1032.  Gene #104: 'ST6GAL2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
ST6GAL2 MUTATED 7 20 15
ST6GAL2 WILD-TYPE 64 80 93
'ST6GAL2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S1033.  Gene #104: 'ST6GAL2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
ST6GAL2 MUTATED 8 7 1 4
ST6GAL2 WILD-TYPE 39 50 26 34
'ST6GAL2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.565 (Fisher's exact test), Q value = 1

Table S1034.  Gene #104: 'ST6GAL2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
ST6GAL2 MUTATED 6 9 5
ST6GAL2 WILD-TYPE 61 50 38
'ST6GAL2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.915 (Fisher's exact test), Q value = 1

Table S1035.  Gene #104: 'ST6GAL2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
ST6GAL2 MUTATED 15 12 15
ST6GAL2 WILD-TYPE 78 67 92
'ST6GAL2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.484 (Fisher's exact test), Q value = 1

Table S1036.  Gene #104: 'ST6GAL2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
ST6GAL2 MUTATED 13 15 14
ST6GAL2 WILD-TYPE 60 107 70
'ST6GAL2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.597 (Fisher's exact test), Q value = 1

Table S1037.  Gene #104: 'ST6GAL2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
ST6GAL2 MUTATED 9 15 15
ST6GAL2 WILD-TYPE 59 102 70
'ST6GAL2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.36 (Fisher's exact test), Q value = 1

Table S1038.  Gene #104: 'ST6GAL2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
ST6GAL2 MUTATED 2 2 13 22
ST6GAL2 WILD-TYPE 27 26 57 121
'ST6GAL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S1039.  Gene #104: 'ST6GAL2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
ST6GAL2 MUTATED 11 13 15
ST6GAL2 WILD-TYPE 77 89 65
'ST6GAL2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S1040.  Gene #104: 'ST6GAL2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
ST6GAL2 MUTATED 2 15 14 8
ST6GAL2 WILD-TYPE 23 97 70 41
'DNAJC5B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 1

Table S1041.  Gene #105: 'DNAJC5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
DNAJC5B MUTATED 9 0 4
DNAJC5B WILD-TYPE 95 76 95

Figure S58.  Get High-res Image Gene #105: 'DNAJC5B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'DNAJC5B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S1042.  Gene #105: 'DNAJC5B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
DNAJC5B MUTATED 3 6 4
DNAJC5B WILD-TYPE 68 94 104
'DNAJC5B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.825 (Fisher's exact test), Q value = 1

Table S1043.  Gene #105: 'DNAJC5B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
DNAJC5B MUTATED 2 3 2 1
DNAJC5B WILD-TYPE 45 54 25 37
'DNAJC5B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S1044.  Gene #105: 'DNAJC5B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
DNAJC5B MUTATED 5 2 1
DNAJC5B WILD-TYPE 62 57 42
'DNAJC5B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S1045.  Gene #105: 'DNAJC5B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
DNAJC5B MUTATED 3 4 6
DNAJC5B WILD-TYPE 90 75 101
'DNAJC5B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S1046.  Gene #105: 'DNAJC5B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
DNAJC5B MUTATED 2 5 6
DNAJC5B WILD-TYPE 71 117 78
'DNAJC5B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.00774 (Fisher's exact test), Q value = 1

Table S1047.  Gene #105: 'DNAJC5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
DNAJC5B MUTATED 3 10 0
DNAJC5B WILD-TYPE 65 107 85

Figure S59.  Get High-res Image Gene #105: 'DNAJC5B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'DNAJC5B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.338 (Fisher's exact test), Q value = 1

Table S1048.  Gene #105: 'DNAJC5B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
DNAJC5B MUTATED 1 1 1 10
DNAJC5B WILD-TYPE 28 27 69 133
'DNAJC5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.014 (Fisher's exact test), Q value = 1

Table S1049.  Gene #105: 'DNAJC5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
DNAJC5B MUTATED 4 9 0
DNAJC5B WILD-TYPE 84 93 80

Figure S60.  Get High-res Image Gene #105: 'DNAJC5B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'DNAJC5B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0592 (Fisher's exact test), Q value = 1

Table S1050.  Gene #105: 'DNAJC5B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
DNAJC5B MUTATED 1 10 1 1
DNAJC5B WILD-TYPE 24 102 83 48
'TAF1A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.62 (Fisher's exact test), Q value = 1

Table S1051.  Gene #106: 'TAF1A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
TAF1A MUTATED 7 3 4
TAF1A WILD-TYPE 97 73 95
'TAF1A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.943 (Fisher's exact test), Q value = 1

Table S1052.  Gene #106: 'TAF1A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
TAF1A MUTATED 4 5 5
TAF1A WILD-TYPE 67 95 103
'TAF1A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S1053.  Gene #106: 'TAF1A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
TAF1A MUTATED 4 3 1 3
TAF1A WILD-TYPE 43 54 26 35
'TAF1A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.277 (Fisher's exact test), Q value = 1

Table S1054.  Gene #106: 'TAF1A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
TAF1A MUTATED 7 2 2
TAF1A WILD-TYPE 60 57 41
'TAF1A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1055.  Gene #106: 'TAF1A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
TAF1A MUTATED 5 4 5
TAF1A WILD-TYPE 88 75 102
'TAF1A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.884 (Fisher's exact test), Q value = 1

Table S1056.  Gene #106: 'TAF1A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
TAF1A MUTATED 3 6 5
TAF1A WILD-TYPE 70 116 79
'TAF1A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.248 (Fisher's exact test), Q value = 1

Table S1057.  Gene #106: 'TAF1A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
TAF1A MUTATED 3 9 2
TAF1A WILD-TYPE 65 108 83
'TAF1A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.894 (Fisher's exact test), Q value = 1

Table S1058.  Gene #106: 'TAF1A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
TAF1A MUTATED 1 2 3 8
TAF1A WILD-TYPE 28 26 67 135
'TAF1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.143 (Fisher's exact test), Q value = 1

Table S1059.  Gene #106: 'TAF1A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
TAF1A MUTATED 3 9 2
TAF1A WILD-TYPE 85 93 78
'TAF1A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S1060.  Gene #106: 'TAF1A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
TAF1A MUTATED 1 6 3 4
TAF1A WILD-TYPE 24 106 81 45
'TRHDE MUTATION STATUS' versus 'CN_CNMF'

P value = 0.112 (Fisher's exact test), Q value = 1

Table S1061.  Gene #107: 'TRHDE MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
TRHDE MUTATED 15 9 23
TRHDE WILD-TYPE 89 67 76
'TRHDE MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S1062.  Gene #107: 'TRHDE MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
TRHDE MUTATED 7 21 19
TRHDE WILD-TYPE 64 79 89
'TRHDE MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.314 (Fisher's exact test), Q value = 1

Table S1063.  Gene #107: 'TRHDE MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
TRHDE MUTATED 10 8 4 11
TRHDE WILD-TYPE 37 49 23 27
'TRHDE MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S1064.  Gene #107: 'TRHDE MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
TRHDE MUTATED 14 10 9
TRHDE WILD-TYPE 53 49 34
'TRHDE MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.241 (Fisher's exact test), Q value = 1

Table S1065.  Gene #107: 'TRHDE MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
TRHDE MUTATED 11 14 22
TRHDE WILD-TYPE 82 65 85
'TRHDE MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.538 (Fisher's exact test), Q value = 1

Table S1066.  Gene #107: 'TRHDE MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
TRHDE MUTATED 10 24 13
TRHDE WILD-TYPE 63 98 71
'TRHDE MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S1067.  Gene #107: 'TRHDE MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
TRHDE MUTATED 11 23 11
TRHDE WILD-TYPE 57 94 74
'TRHDE MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S1068.  Gene #107: 'TRHDE MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
TRHDE MUTATED 3 2 14 26
TRHDE WILD-TYPE 26 26 56 117
'TRHDE MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.288 (Fisher's exact test), Q value = 1

Table S1069.  Gene #107: 'TRHDE MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
TRHDE MUTATED 16 20 9
TRHDE WILD-TYPE 72 82 71
'TRHDE MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.045 (Fisher's exact test), Q value = 1

Table S1070.  Gene #107: 'TRHDE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
TRHDE MUTATED 2 25 15 3
TRHDE WILD-TYPE 23 87 69 46

Figure S61.  Get High-res Image Gene #107: 'TRHDE MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'COL19A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.298 (Fisher's exact test), Q value = 1

Table S1071.  Gene #108: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
COL19A1 MUTATED 16 6 14
COL19A1 WILD-TYPE 88 70 85
'COL19A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0933 (Fisher's exact test), Q value = 1

Table S1072.  Gene #108: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
COL19A1 MUTATED 7 19 10
COL19A1 WILD-TYPE 64 81 98
'COL19A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0942 (Fisher's exact test), Q value = 1

Table S1073.  Gene #108: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
COL19A1 MUTATED 10 3 3 6
COL19A1 WILD-TYPE 37 54 24 32
'COL19A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S1074.  Gene #108: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
COL19A1 MUTATED 6 10 6
COL19A1 WILD-TYPE 61 49 37
'COL19A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.745 (Fisher's exact test), Q value = 1

Table S1075.  Gene #108: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
COL19A1 MUTATED 10 11 15
COL19A1 WILD-TYPE 83 68 92
'COL19A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S1076.  Gene #108: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
COL19A1 MUTATED 10 15 11
COL19A1 WILD-TYPE 63 107 73
'COL19A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.694 (Fisher's exact test), Q value = 1

Table S1077.  Gene #108: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
COL19A1 MUTATED 7 17 10
COL19A1 WILD-TYPE 61 100 75
'COL19A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.82 (Fisher's exact test), Q value = 1

Table S1078.  Gene #108: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
COL19A1 MUTATED 2 3 10 19
COL19A1 WILD-TYPE 27 25 60 124
'COL19A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.508 (Fisher's exact test), Q value = 1

Table S1079.  Gene #108: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
COL19A1 MUTATED 9 16 9
COL19A1 WILD-TYPE 79 86 71
'COL19A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S1080.  Gene #108: 'COL19A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
COL19A1 MUTATED 1 15 12 6
COL19A1 WILD-TYPE 24 97 72 43
'OR4K1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.661 (Fisher's exact test), Q value = 1

Table S1081.  Gene #109: 'OR4K1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
OR4K1 MUTATED 10 7 13
OR4K1 WILD-TYPE 94 69 86
'OR4K1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S1082.  Gene #109: 'OR4K1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
OR4K1 MUTATED 9 12 9
OR4K1 WILD-TYPE 62 88 99
'OR4K1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.171 (Fisher's exact test), Q value = 1

Table S1083.  Gene #109: 'OR4K1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
OR4K1 MUTATED 5 5 1 8
OR4K1 WILD-TYPE 42 52 26 30
'OR4K1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.581 (Fisher's exact test), Q value = 1

Table S1084.  Gene #109: 'OR4K1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
OR4K1 MUTATED 8 8 3
OR4K1 WILD-TYPE 59 51 40
'OR4K1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.904 (Fisher's exact test), Q value = 1

Table S1085.  Gene #109: 'OR4K1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
OR4K1 MUTATED 11 8 11
OR4K1 WILD-TYPE 82 71 96
'OR4K1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S1086.  Gene #109: 'OR4K1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
OR4K1 MUTATED 10 11 9
OR4K1 WILD-TYPE 63 111 75
'OR4K1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S1087.  Gene #109: 'OR4K1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
OR4K1 MUTATED 6 10 12
OR4K1 WILD-TYPE 62 107 73
'OR4K1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.207 (Fisher's exact test), Q value = 1

Table S1088.  Gene #109: 'OR4K1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
OR4K1 MUTATED 5 1 10 12
OR4K1 WILD-TYPE 24 27 60 131
'OR4K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S1089.  Gene #109: 'OR4K1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
OR4K1 MUTATED 9 9 10
OR4K1 WILD-TYPE 79 93 70
'OR4K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.42 (Fisher's exact test), Q value = 1

Table S1090.  Gene #109: 'OR4K1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
OR4K1 MUTATED 4 10 11 3
OR4K1 WILD-TYPE 21 102 73 46
'FASLG MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0186 (Fisher's exact test), Q value = 1

Table S1091.  Gene #110: 'FASLG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
FASLG MUTATED 2 1 9
FASLG WILD-TYPE 102 75 90

Figure S62.  Get High-res Image Gene #110: 'FASLG MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FASLG MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S1092.  Gene #110: 'FASLG MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
FASLG MUTATED 1 7 4
FASLG WILD-TYPE 70 93 104
'FASLG MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.425 (Fisher's exact test), Q value = 1

Table S1093.  Gene #110: 'FASLG MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
FASLG MUTATED 2 5 0 3
FASLG WILD-TYPE 45 52 27 35
'FASLG MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S1094.  Gene #110: 'FASLG MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
FASLG MUTATED 4 5 1
FASLG WILD-TYPE 63 54 42
'FASLG MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S1095.  Gene #110: 'FASLG MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
FASLG MUTATED 2 3 7
FASLG WILD-TYPE 91 76 100
'FASLG MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S1096.  Gene #110: 'FASLG MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
FASLG MUTATED 2 7 3
FASLG WILD-TYPE 71 115 81
'FASLG MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.325 (Fisher's exact test), Q value = 1

Table S1097.  Gene #110: 'FASLG MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
FASLG MUTATED 5 4 2
FASLG WILD-TYPE 63 113 83
'FASLG MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S1098.  Gene #110: 'FASLG MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
FASLG MUTATED 1 0 5 5
FASLG WILD-TYPE 28 28 65 138
'FASLG MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.087 (Fisher's exact test), Q value = 1

Table S1099.  Gene #110: 'FASLG MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
FASLG MUTATED 7 3 1
FASLG WILD-TYPE 81 99 79
'FASLG MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S1100.  Gene #110: 'FASLG MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
FASLG MUTATED 1 6 4 0
FASLG WILD-TYPE 24 106 80 49
'TMC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.61 (Fisher's exact test), Q value = 1

Table S1101.  Gene #111: 'TMC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
TMC5 MUTATED 15 11 19
TMC5 WILD-TYPE 89 65 80
'TMC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0115 (Fisher's exact test), Q value = 1

Table S1102.  Gene #111: 'TMC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
TMC5 MUTATED 4 21 20
TMC5 WILD-TYPE 67 79 88

Figure S63.  Get High-res Image Gene #111: 'TMC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TMC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S1103.  Gene #111: 'TMC5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
TMC5 MUTATED 10 8 2 7
TMC5 WILD-TYPE 37 49 25 31
'TMC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S1104.  Gene #111: 'TMC5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
TMC5 MUTATED 8 11 8
TMC5 WILD-TYPE 59 48 35
'TMC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.000714 (Fisher's exact test), Q value = 1

Table S1105.  Gene #111: 'TMC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
TMC5 MUTATED 6 22 17
TMC5 WILD-TYPE 87 57 90

Figure S64.  Get High-res Image Gene #111: 'TMC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'TMC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0161 (Fisher's exact test), Q value = 1

Table S1106.  Gene #111: 'TMC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
TMC5 MUTATED 5 27 13
TMC5 WILD-TYPE 68 95 71

Figure S65.  Get High-res Image Gene #111: 'TMC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'TMC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.1 (Fisher's exact test), Q value = 1

Table S1107.  Gene #111: 'TMC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
TMC5 MUTATED 9 25 9
TMC5 WILD-TYPE 59 92 76
'TMC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.00601 (Fisher's exact test), Q value = 1

Table S1108.  Gene #111: 'TMC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
TMC5 MUTATED 3 0 8 32
TMC5 WILD-TYPE 26 28 62 111

Figure S66.  Get High-res Image Gene #111: 'TMC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'TMC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0755 (Fisher's exact test), Q value = 1

Table S1109.  Gene #111: 'TMC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
TMC5 MUTATED 11 23 9
TMC5 WILD-TYPE 77 79 71
'TMC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00995 (Fisher's exact test), Q value = 1

Table S1110.  Gene #111: 'TMC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
TMC5 MUTATED 3 28 8 4
TMC5 WILD-TYPE 22 84 76 45

Figure S67.  Get High-res Image Gene #111: 'TMC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'NOP10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S1111.  Gene #112: 'NOP10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
NOP10 MUTATED 2 0 1
NOP10 WILD-TYPE 102 76 98
'NOP10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S1112.  Gene #112: 'NOP10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
NOP10 MUTATED 0 1 2
NOP10 WILD-TYPE 71 99 106
'NOP10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.395 (Fisher's exact test), Q value = 1

Table S1113.  Gene #112: 'NOP10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
NOP10 MUTATED 0 2 1 0
NOP10 WILD-TYPE 47 55 26 38
'NOP10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.117 (Fisher's exact test), Q value = 1

Table S1114.  Gene #112: 'NOP10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
NOP10 MUTATED 3 0 0
NOP10 WILD-TYPE 64 59 43
'NOP10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1115.  Gene #112: 'NOP10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
NOP10 MUTATED 1 1 1
NOP10 WILD-TYPE 92 78 106
'NOP10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S1116.  Gene #112: 'NOP10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
NOP10 MUTATED 0 1 2
NOP10 WILD-TYPE 73 121 82
'NOP10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1117.  Gene #112: 'NOP10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
NOP10 MUTATED 1 1 1
NOP10 WILD-TYPE 67 116 84
'NOP10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0426 (Fisher's exact test), Q value = 1

Table S1118.  Gene #112: 'NOP10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
NOP10 MUTATED 0 2 0 1
NOP10 WILD-TYPE 29 26 70 142

Figure S68.  Get High-res Image Gene #112: 'NOP10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

'NOP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S1119.  Gene #112: 'NOP10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
NOP10 MUTATED 0 2 1
NOP10 WILD-TYPE 88 100 79
'NOP10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.839 (Fisher's exact test), Q value = 1

Table S1120.  Gene #112: 'NOP10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
NOP10 MUTATED 0 1 1 1
NOP10 WILD-TYPE 25 111 83 48
'CTNNB1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S1121.  Gene #113: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
CTNNB1 MUTATED 3 6 5
CTNNB1 WILD-TYPE 101 70 94
'CTNNB1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.753 (Fisher's exact test), Q value = 1

Table S1122.  Gene #113: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
CTNNB1 MUTATED 4 6 4
CTNNB1 WILD-TYPE 67 94 104
'CTNNB1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.301 (Fisher's exact test), Q value = 1

Table S1123.  Gene #113: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
CTNNB1 MUTATED 1 5 0 2
CTNNB1 WILD-TYPE 46 52 27 36
'CTNNB1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S1124.  Gene #113: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
CTNNB1 MUTATED 2 3 3
CTNNB1 WILD-TYPE 65 56 40
'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.336 (Fisher's exact test), Q value = 1

Table S1125.  Gene #113: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
CTNNB1 MUTATED 4 2 8
CTNNB1 WILD-TYPE 89 77 99
'CTNNB1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S1126.  Gene #113: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
CTNNB1 MUTATED 4 4 6
CTNNB1 WILD-TYPE 69 118 78
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S1127.  Gene #113: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
CTNNB1 MUTATED 5 5 3
CTNNB1 WILD-TYPE 63 112 82
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S1128.  Gene #113: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
CTNNB1 MUTATED 2 0 4 7
CTNNB1 WILD-TYPE 27 28 66 136
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S1129.  Gene #113: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
CTNNB1 MUTATED 5 5 3
CTNNB1 WILD-TYPE 83 97 77
'CTNNB1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.236 (Fisher's exact test), Q value = 1

Table S1130.  Gene #113: 'CTNNB1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
CTNNB1 MUTATED 2 6 5 0
CTNNB1 WILD-TYPE 23 106 79 49
'SNCAIP MUTATION STATUS' versus 'CN_CNMF'

P value = 0.722 (Fisher's exact test), Q value = 1

Table S1131.  Gene #114: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
SNCAIP MUTATED 19 11 19
SNCAIP WILD-TYPE 85 65 80
'SNCAIP MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S1132.  Gene #114: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
SNCAIP MUTATED 10 18 21
SNCAIP WILD-TYPE 61 82 87
'SNCAIP MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.499 (Fisher's exact test), Q value = 1

Table S1133.  Gene #114: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
SNCAIP MUTATED 10 9 2 6
SNCAIP WILD-TYPE 37 48 25 32
'SNCAIP MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.777 (Fisher's exact test), Q value = 1

Table S1134.  Gene #114: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
SNCAIP MUTATED 10 11 6
SNCAIP WILD-TYPE 57 48 37
'SNCAIP MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S1135.  Gene #114: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
SNCAIP MUTATED 15 15 19
SNCAIP WILD-TYPE 78 64 88
'SNCAIP MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.37 (Fisher's exact test), Q value = 1

Table S1136.  Gene #114: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
SNCAIP MUTATED 11 26 12
SNCAIP WILD-TYPE 62 96 72
'SNCAIP MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.398 (Fisher's exact test), Q value = 1

Table S1137.  Gene #114: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
SNCAIP MUTATED 14 22 11
SNCAIP WILD-TYPE 54 95 74
'SNCAIP MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.413 (Fisher's exact test), Q value = 1

Table S1138.  Gene #114: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
SNCAIP MUTATED 5 2 11 29
SNCAIP WILD-TYPE 24 26 59 114
'SNCAIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S1139.  Gene #114: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
SNCAIP MUTATED 17 20 10
SNCAIP WILD-TYPE 71 82 70
'SNCAIP MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.232 (Fisher's exact test), Q value = 1

Table S1140.  Gene #114: 'SNCAIP MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
SNCAIP MUTATED 5 25 12 5
SNCAIP WILD-TYPE 20 87 72 44
'CD2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.177 (Fisher's exact test), Q value = 1

Table S1141.  Gene #115: 'CD2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
CD2 MUTATED 12 4 5
CD2 WILD-TYPE 92 72 94
'CD2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S1142.  Gene #115: 'CD2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
CD2 MUTATED 3 12 6
CD2 WILD-TYPE 68 88 102
'CD2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.486 (Fisher's exact test), Q value = 1

Table S1143.  Gene #115: 'CD2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
CD2 MUTATED 4 5 0 3
CD2 WILD-TYPE 43 52 27 35
'CD2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.752 (Fisher's exact test), Q value = 1

Table S1144.  Gene #115: 'CD2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
CD2 MUTATED 6 4 2
CD2 WILD-TYPE 61 55 41
'CD2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.619 (Fisher's exact test), Q value = 1

Table S1145.  Gene #115: 'CD2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
CD2 MUTATED 8 7 6
CD2 WILD-TYPE 85 72 101
'CD2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.671 (Fisher's exact test), Q value = 1

Table S1146.  Gene #115: 'CD2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
CD2 MUTATED 4 11 6
CD2 WILD-TYPE 69 111 78
'CD2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S1147.  Gene #115: 'CD2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
CD2 MUTATED 6 9 5
CD2 WILD-TYPE 62 108 80
'CD2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.666 (Fisher's exact test), Q value = 1

Table S1148.  Gene #115: 'CD2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
CD2 MUTATED 3 3 4 10
CD2 WILD-TYPE 26 25 66 133
'CD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S1149.  Gene #115: 'CD2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
CD2 MUTATED 7 8 5
CD2 WILD-TYPE 81 94 75
'CD2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 1

Table S1150.  Gene #115: 'CD2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
CD2 MUTATED 3 10 5 2
CD2 WILD-TYPE 22 102 79 47
'SLC38A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.798 (Fisher's exact test), Q value = 1

Table S1151.  Gene #116: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
SLC38A1 MUTATED 8 4 8
SLC38A1 WILD-TYPE 96 72 91
'SLC38A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.683 (Fisher's exact test), Q value = 1

Table S1152.  Gene #116: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
SLC38A1 MUTATED 4 9 7
SLC38A1 WILD-TYPE 67 91 101
'SLC38A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.432 (Fisher's exact test), Q value = 1

Table S1153.  Gene #116: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
SLC38A1 MUTATED 3 1 2 3
SLC38A1 WILD-TYPE 44 56 25 35
'SLC38A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1154.  Gene #116: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
SLC38A1 MUTATED 4 3 2
SLC38A1 WILD-TYPE 63 56 41
'SLC38A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S1155.  Gene #116: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
SLC38A1 MUTATED 6 4 10
SLC38A1 WILD-TYPE 87 75 97
'SLC38A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S1156.  Gene #116: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
SLC38A1 MUTATED 5 7 8
SLC38A1 WILD-TYPE 68 115 76
'SLC38A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.759 (Fisher's exact test), Q value = 1

Table S1157.  Gene #116: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
SLC38A1 MUTATED 3 9 6
SLC38A1 WILD-TYPE 65 108 79
'SLC38A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.633 (Fisher's exact test), Q value = 1

Table S1158.  Gene #116: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
SLC38A1 MUTATED 1 1 7 9
SLC38A1 WILD-TYPE 28 27 63 134
'SLC38A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.291 (Fisher's exact test), Q value = 1

Table S1159.  Gene #116: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
SLC38A1 MUTATED 3 9 6
SLC38A1 WILD-TYPE 85 93 74
'SLC38A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.815 (Fisher's exact test), Q value = 1

Table S1160.  Gene #116: 'SLC38A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
SLC38A1 MUTATED 1 8 7 2
SLC38A1 WILD-TYPE 24 104 77 47
'LIPI MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0471 (Fisher's exact test), Q value = 1

Table S1161.  Gene #117: 'LIPI MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
LIPI MUTATED 13 2 10
LIPI WILD-TYPE 91 74 89

Figure S69.  Get High-res Image Gene #117: 'LIPI MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'LIPI MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.941 (Fisher's exact test), Q value = 1

Table S1162.  Gene #117: 'LIPI MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
LIPI MUTATED 7 9 9
LIPI WILD-TYPE 64 91 99
'LIPI MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.856 (Fisher's exact test), Q value = 1

Table S1163.  Gene #117: 'LIPI MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
LIPI MUTATED 3 6 3 3
LIPI WILD-TYPE 44 51 24 35
'LIPI MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.622 (Fisher's exact test), Q value = 1

Table S1164.  Gene #117: 'LIPI MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
LIPI MUTATED 5 7 3
LIPI WILD-TYPE 62 52 40
'LIPI MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.297 (Fisher's exact test), Q value = 1

Table S1165.  Gene #117: 'LIPI MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
LIPI MUTATED 5 9 11
LIPI WILD-TYPE 88 70 96
'LIPI MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.194 (Fisher's exact test), Q value = 1

Table S1166.  Gene #117: 'LIPI MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
LIPI MUTATED 3 12 10
LIPI WILD-TYPE 70 110 74
'LIPI MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S1167.  Gene #117: 'LIPI MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
LIPI MUTATED 6 12 6
LIPI WILD-TYPE 62 105 79
'LIPI MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0627 (Fisher's exact test), Q value = 1

Table S1168.  Gene #117: 'LIPI MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
LIPI MUTATED 4 0 3 17
LIPI WILD-TYPE 25 28 67 126
'LIPI MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.189 (Fisher's exact test), Q value = 1

Table S1169.  Gene #117: 'LIPI MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
LIPI MUTATED 7 13 4
LIPI WILD-TYPE 81 89 76
'LIPI MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0777 (Fisher's exact test), Q value = 1

Table S1170.  Gene #117: 'LIPI MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
LIPI MUTATED 3 15 3 3
LIPI WILD-TYPE 22 97 81 46
'C7ORF58 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0737 (Fisher's exact test), Q value = 1

Table S1171.  Gene #118: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
C7ORF58 MUTATED 12 15 8
C7ORF58 WILD-TYPE 92 61 91
'C7ORF58 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.281 (Fisher's exact test), Q value = 1

Table S1172.  Gene #118: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
C7ORF58 MUTATED 7 17 11
C7ORF58 WILD-TYPE 64 83 97
'C7ORF58 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0674 (Fisher's exact test), Q value = 1

Table S1173.  Gene #118: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
C7ORF58 MUTATED 7 8 0 8
C7ORF58 WILD-TYPE 40 49 27 30
'C7ORF58 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S1174.  Gene #118: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
C7ORF58 MUTATED 5 12 6
C7ORF58 WILD-TYPE 62 47 37
'C7ORF58 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.702 (Fisher's exact test), Q value = 1

Table S1175.  Gene #118: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
C7ORF58 MUTATED 11 12 12
C7ORF58 WILD-TYPE 82 67 95
'C7ORF58 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.909 (Fisher's exact test), Q value = 1

Table S1176.  Gene #118: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
C7ORF58 MUTATED 8 16 11
C7ORF58 WILD-TYPE 65 106 73
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S1177.  Gene #118: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
C7ORF58 MUTATED 11 14 8
C7ORF58 WILD-TYPE 57 103 77
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S1178.  Gene #118: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
C7ORF58 MUTATED 6 3 7 17
C7ORF58 WILD-TYPE 23 25 63 126
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S1179.  Gene #118: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
C7ORF58 MUTATED 12 12 9
C7ORF58 WILD-TYPE 76 90 71
'C7ORF58 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.541 (Fisher's exact test), Q value = 1

Table S1180.  Gene #118: 'C7ORF58 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
C7ORF58 MUTATED 5 14 8 6
C7ORF58 WILD-TYPE 20 98 76 43
'COL5A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00621 (Fisher's exact test), Q value = 1

Table S1181.  Gene #119: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
COL5A1 MUTATED 21 7 28
COL5A1 WILD-TYPE 83 69 71

Figure S70.  Get High-res Image Gene #119: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'COL5A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S1182.  Gene #119: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
COL5A1 MUTATED 11 22 23
COL5A1 WILD-TYPE 60 78 85
'COL5A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 1

Table S1183.  Gene #119: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
COL5A1 MUTATED 10 10 3 12
COL5A1 WILD-TYPE 37 47 24 26
'COL5A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.326 (Fisher's exact test), Q value = 1

Table S1184.  Gene #119: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
COL5A1 MUTATED 12 16 7
COL5A1 WILD-TYPE 55 43 36
'COL5A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.172 (Fisher's exact test), Q value = 1

Table S1185.  Gene #119: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
COL5A1 MUTATED 13 17 26
COL5A1 WILD-TYPE 80 62 81
'COL5A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.151 (Fisher's exact test), Q value = 1

Table S1186.  Gene #119: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
COL5A1 MUTATED 9 28 19
COL5A1 WILD-TYPE 64 94 65
'COL5A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.665 (Fisher's exact test), Q value = 1

Table S1187.  Gene #119: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
COL5A1 MUTATED 12 26 15
COL5A1 WILD-TYPE 56 91 70
'COL5A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S1188.  Gene #119: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
COL5A1 MUTATED 6 2 13 32
COL5A1 WILD-TYPE 23 26 57 111
'COL5A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.139 (Fisher's exact test), Q value = 1

Table S1189.  Gene #119: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
COL5A1 MUTATED 21 22 10
COL5A1 WILD-TYPE 67 80 70
'COL5A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0622 (Fisher's exact test), Q value = 1

Table S1190.  Gene #119: 'COL5A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
COL5A1 MUTATED 5 29 15 4
COL5A1 WILD-TYPE 20 83 69 45
'SERPINA10 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.967 (Fisher's exact test), Q value = 1

Table S1191.  Gene #120: 'SERPINA10 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
SERPINA10 MUTATED 11 7 10
SERPINA10 WILD-TYPE 93 69 89
'SERPINA10 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0349 (Fisher's exact test), Q value = 1

Table S1192.  Gene #120: 'SERPINA10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
SERPINA10 MUTATED 3 16 9
SERPINA10 WILD-TYPE 68 84 99

Figure S71.  Get High-res Image Gene #120: 'SERPINA10 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SERPINA10 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.231 (Fisher's exact test), Q value = 1

Table S1193.  Gene #120: 'SERPINA10 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
SERPINA10 MUTATED 6 3 1 6
SERPINA10 WILD-TYPE 41 54 26 32
'SERPINA10 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S1194.  Gene #120: 'SERPINA10 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
SERPINA10 MUTATED 3 8 5
SERPINA10 WILD-TYPE 64 51 38
'SERPINA10 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.737 (Fisher's exact test), Q value = 1

Table S1195.  Gene #120: 'SERPINA10 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
SERPINA10 MUTATED 11 8 9
SERPINA10 WILD-TYPE 82 71 98
'SERPINA10 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.743 (Fisher's exact test), Q value = 1

Table S1196.  Gene #120: 'SERPINA10 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
SERPINA10 MUTATED 9 11 8
SERPINA10 WILD-TYPE 64 111 76
'SERPINA10 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S1197.  Gene #120: 'SERPINA10 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
SERPINA10 MUTATED 6 11 10
SERPINA10 WILD-TYPE 62 106 75
'SERPINA10 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S1198.  Gene #120: 'SERPINA10 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
SERPINA10 MUTATED 2 4 9 12
SERPINA10 WILD-TYPE 27 24 61 131
'SERPINA10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.322 (Fisher's exact test), Q value = 1

Table S1199.  Gene #120: 'SERPINA10 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
SERPINA10 MUTATED 6 10 11
SERPINA10 WILD-TYPE 82 92 69
'SERPINA10 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S1200.  Gene #120: 'SERPINA10 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
SERPINA10 MUTATED 2 10 11 4
SERPINA10 WILD-TYPE 23 102 73 45
'C1ORF127 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.238 (Fisher's exact test), Q value = 1

Table S1201.  Gene #121: 'C1ORF127 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
C1ORF127 MUTATED 11 3 6
C1ORF127 WILD-TYPE 93 73 93
'C1ORF127 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.785 (Fisher's exact test), Q value = 1

Table S1202.  Gene #121: 'C1ORF127 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
C1ORF127 MUTATED 5 6 9
C1ORF127 WILD-TYPE 66 94 99
'C1ORF127 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S1203.  Gene #121: 'C1ORF127 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
C1ORF127 MUTATED 5 4 1 5
C1ORF127 WILD-TYPE 42 53 26 33
'C1ORF127 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0509 (Fisher's exact test), Q value = 1

Table S1204.  Gene #121: 'C1ORF127 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
C1ORF127 MUTATED 2 9 4
C1ORF127 WILD-TYPE 65 50 39
'C1ORF127 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.47 (Fisher's exact test), Q value = 1

Table S1205.  Gene #121: 'C1ORF127 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
C1ORF127 MUTATED 5 8 7
C1ORF127 WILD-TYPE 88 71 100
'C1ORF127 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.452 (Fisher's exact test), Q value = 1

Table S1206.  Gene #121: 'C1ORF127 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
C1ORF127 MUTATED 3 11 6
C1ORF127 WILD-TYPE 70 111 78
'C1ORF127 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S1207.  Gene #121: 'C1ORF127 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
C1ORF127 MUTATED 7 7 5
C1ORF127 WILD-TYPE 61 110 80
'C1ORF127 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.836 (Fisher's exact test), Q value = 1

Table S1208.  Gene #121: 'C1ORF127 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
C1ORF127 MUTATED 1 1 6 11
C1ORF127 WILD-TYPE 28 27 64 132
'C1ORF127 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.942 (Fisher's exact test), Q value = 1

Table S1209.  Gene #121: 'C1ORF127 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
C1ORF127 MUTATED 6 8 5
C1ORF127 WILD-TYPE 82 94 75
'C1ORF127 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.947 (Fisher's exact test), Q value = 1

Table S1210.  Gene #121: 'C1ORF127 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
C1ORF127 MUTATED 1 8 6 4
C1ORF127 WILD-TYPE 24 104 78 45
'TTN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S1211.  Gene #122: 'TTN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
TTN MUTATED 69 59 74
TTN WILD-TYPE 35 17 25
'TTN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.000497 (Fisher's exact test), Q value = 0.84

Table S1212.  Gene #122: 'TTN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
TTN MUTATED 39 82 81
TTN WILD-TYPE 32 18 27

Figure S72.  Get High-res Image Gene #122: 'TTN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'TTN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S1213.  Gene #122: 'TTN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
TTN MUTATED 35 37 21 30
TTN WILD-TYPE 12 20 6 8
'TTN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.175 (Fisher's exact test), Q value = 1

Table S1214.  Gene #122: 'TTN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
TTN MUTATED 45 48 30
TTN WILD-TYPE 22 11 13
'TTN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.429 (Fisher's exact test), Q value = 1

Table S1215.  Gene #122: 'TTN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
TTN MUTATED 71 58 73
TTN WILD-TYPE 22 21 34
'TTN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.233 (Fisher's exact test), Q value = 1

Table S1216.  Gene #122: 'TTN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
TTN MUTATED 56 91 55
TTN WILD-TYPE 17 31 29
'TTN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0739 (Fisher's exact test), Q value = 1

Table S1217.  Gene #122: 'TTN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
TTN MUTATED 56 79 59
TTN WILD-TYPE 12 38 26
'TTN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.299 (Fisher's exact test), Q value = 1

Table S1218.  Gene #122: 'TTN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
TTN MUTATED 24 17 52 101
TTN WILD-TYPE 5 11 18 42
'TTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.138 (Fisher's exact test), Q value = 1

Table S1219.  Gene #122: 'TTN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
TTN MUTATED 70 70 54
TTN WILD-TYPE 18 32 26
'TTN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.387 (Fisher's exact test), Q value = 1

Table S1220.  Gene #122: 'TTN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
TTN MUTATED 21 82 59 32
TTN WILD-TYPE 4 30 25 17
'DGAT2L6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S1221.  Gene #123: 'DGAT2L6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
DGAT2L6 MUTATED 4 2 5
DGAT2L6 WILD-TYPE 100 74 94
'DGAT2L6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.536 (Fisher's exact test), Q value = 1

Table S1222.  Gene #123: 'DGAT2L6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
DGAT2L6 MUTATED 2 6 3
DGAT2L6 WILD-TYPE 69 94 105
'DGAT2L6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.492 (Fisher's exact test), Q value = 1

Table S1223.  Gene #123: 'DGAT2L6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
DGAT2L6 MUTATED 2 2 1 4
DGAT2L6 WILD-TYPE 45 55 26 34
'DGAT2L6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S1224.  Gene #123: 'DGAT2L6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
DGAT2L6 MUTATED 5 2 2
DGAT2L6 WILD-TYPE 62 57 41
'DGAT2L6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.267 (Fisher's exact test), Q value = 1

Table S1225.  Gene #123: 'DGAT2L6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
DGAT2L6 MUTATED 2 2 7
DGAT2L6 WILD-TYPE 91 77 100
'DGAT2L6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.458 (Fisher's exact test), Q value = 1

Table S1226.  Gene #123: 'DGAT2L6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
DGAT2L6 MUTATED 1 6 4
DGAT2L6 WILD-TYPE 72 116 80
'DGAT2L6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.792 (Fisher's exact test), Q value = 1

Table S1227.  Gene #123: 'DGAT2L6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
DGAT2L6 MUTATED 2 6 3
DGAT2L6 WILD-TYPE 66 111 82
'DGAT2L6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S1228.  Gene #123: 'DGAT2L6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
DGAT2L6 MUTATED 1 0 2 8
DGAT2L6 WILD-TYPE 28 28 68 135
'DGAT2L6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.134 (Fisher's exact test), Q value = 1

Table S1229.  Gene #123: 'DGAT2L6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
DGAT2L6 MUTATED 1 7 3
DGAT2L6 WILD-TYPE 87 95 77
'DGAT2L6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.519 (Fisher's exact test), Q value = 1

Table S1230.  Gene #123: 'DGAT2L6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
DGAT2L6 MUTATED 1 7 2 1
DGAT2L6 WILD-TYPE 24 105 82 48
'C3ORF71 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.145 (Fisher's exact test), Q value = 1

Table S1231.  Gene #124: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
C3ORF71 MUTATED 0 1 3
C3ORF71 WILD-TYPE 104 75 96
'C3ORF71 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.244 (Fisher's exact test), Q value = 1

Table S1232.  Gene #124: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
C3ORF71 MUTATED 2 0 2
C3ORF71 WILD-TYPE 69 100 106
'C3ORF71 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S1233.  Gene #124: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
C3ORF71 MUTATED 1 3 0 0
C3ORF71 WILD-TYPE 46 54 27 38
'C3ORF71 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S1234.  Gene #124: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
C3ORF71 MUTATED 0 3 1
C3ORF71 WILD-TYPE 67 56 42
'C3ORF71 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S1235.  Gene #124: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
C3ORF71 MUTATED 3 1 0
C3ORF71 WILD-TYPE 90 78 107
'C3ORF71 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0922 (Fisher's exact test), Q value = 1

Table S1236.  Gene #124: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
C3ORF71 MUTATED 3 1 0
C3ORF71 WILD-TYPE 70 121 84
'C3ORF71 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.819 (Fisher's exact test), Q value = 1

Table S1237.  Gene #124: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
C3ORF71 MUTATED 1 1 2
C3ORF71 WILD-TYPE 67 116 83
'C3ORF71 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.176 (Fisher's exact test), Q value = 1

Table S1238.  Gene #124: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
C3ORF71 MUTATED 0 0 3 1
C3ORF71 WILD-TYPE 29 28 67 142
'C3ORF71 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.688 (Fisher's exact test), Q value = 1

Table S1239.  Gene #124: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
C3ORF71 MUTATED 1 1 2
C3ORF71 WILD-TYPE 87 101 78
'C3ORF71 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S1240.  Gene #124: 'C3ORF71 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
C3ORF71 MUTATED 0 1 3 0
C3ORF71 WILD-TYPE 25 111 81 49
'SLC9A4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S1241.  Gene #125: 'SLC9A4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
SLC9A4 MUTATED 12 4 13
SLC9A4 WILD-TYPE 92 72 86
'SLC9A4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0208 (Fisher's exact test), Q value = 1

Table S1242.  Gene #125: 'SLC9A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
SLC9A4 MUTATED 3 17 9
SLC9A4 WILD-TYPE 68 83 99

Figure S73.  Get High-res Image Gene #125: 'SLC9A4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'SLC9A4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.786 (Fisher's exact test), Q value = 1

Table S1243.  Gene #125: 'SLC9A4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
SLC9A4 MUTATED 5 8 2 3
SLC9A4 WILD-TYPE 42 49 25 35
'SLC9A4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S1244.  Gene #125: 'SLC9A4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
SLC9A4 MUTATED 6 8 4
SLC9A4 WILD-TYPE 61 51 39
'SLC9A4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.617 (Fisher's exact test), Q value = 1

Table S1245.  Gene #125: 'SLC9A4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
SLC9A4 MUTATED 10 10 9
SLC9A4 WILD-TYPE 83 69 98
'SLC9A4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.746 (Fisher's exact test), Q value = 1

Table S1246.  Gene #125: 'SLC9A4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
SLC9A4 MUTATED 8 14 7
SLC9A4 WILD-TYPE 65 108 77
'SLC9A4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.733 (Fisher's exact test), Q value = 1

Table S1247.  Gene #125: 'SLC9A4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
SLC9A4 MUTATED 8 13 7
SLC9A4 WILD-TYPE 60 104 78
'SLC9A4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.971 (Fisher's exact test), Q value = 1

Table S1248.  Gene #125: 'SLC9A4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
SLC9A4 MUTATED 3 2 7 16
SLC9A4 WILD-TYPE 26 26 63 127
'SLC9A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S1249.  Gene #125: 'SLC9A4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
SLC9A4 MUTATED 9 14 5
SLC9A4 WILD-TYPE 79 88 75
'SLC9A4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.742 (Fisher's exact test), Q value = 1

Table S1250.  Gene #125: 'SLC9A4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
SLC9A4 MUTATED 3 14 7 4
SLC9A4 WILD-TYPE 22 98 77 45
'MKX MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0831 (Fisher's exact test), Q value = 1

Table S1251.  Gene #126: 'MKX MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
MKX MUTATED 7 1 9
MKX WILD-TYPE 97 75 90
'MKX MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.152 (Fisher's exact test), Q value = 1

Table S1252.  Gene #126: 'MKX MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
MKX MUTATED 1 8 8
MKX WILD-TYPE 70 92 100
'MKX MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1253.  Gene #126: 'MKX MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
MKX MUTATED 3 4 2 3
MKX WILD-TYPE 44 53 25 35
'MKX MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.515 (Fisher's exact test), Q value = 1

Table S1254.  Gene #126: 'MKX MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
MKX MUTATED 3 6 3
MKX WILD-TYPE 64 53 40
'MKX MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0245 (Fisher's exact test), Q value = 1

Table S1255.  Gene #126: 'MKX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
MKX MUTATED 1 6 10
MKX WILD-TYPE 92 73 97

Figure S74.  Get High-res Image Gene #126: 'MKX MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MKX MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0501 (Fisher's exact test), Q value = 1

Table S1256.  Gene #126: 'MKX MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
MKX MUTATED 1 12 4
MKX WILD-TYPE 72 110 80
'MKX MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S1257.  Gene #126: 'MKX MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
MKX MUTATED 6 9 2
MKX WILD-TYPE 62 108 83
'MKX MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.157 (Fisher's exact test), Q value = 1

Table S1258.  Gene #126: 'MKX MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
MKX MUTATED 3 0 2 12
MKX WILD-TYPE 26 28 68 131
'MKX MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0705 (Fisher's exact test), Q value = 1

Table S1259.  Gene #126: 'MKX MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
MKX MUTATED 4 11 2
MKX WILD-TYPE 84 91 78
'MKX MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00938 (Fisher's exact test), Q value = 1

Table S1260.  Gene #126: 'MKX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
MKX MUTATED 3 12 2 0
MKX WILD-TYPE 22 100 82 49

Figure S75.  Get High-res Image Gene #126: 'MKX MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'FAM19A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.029 (Fisher's exact test), Q value = 1

Table S1261.  Gene #127: 'FAM19A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
FAM19A1 MUTATED 8 0 5
FAM19A1 WILD-TYPE 96 76 94

Figure S76.  Get High-res Image Gene #127: 'FAM19A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'FAM19A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1262.  Gene #127: 'FAM19A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
FAM19A1 MUTATED 3 5 5
FAM19A1 WILD-TYPE 68 95 103
'FAM19A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S1263.  Gene #127: 'FAM19A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
FAM19A1 MUTATED 3 1 1 2
FAM19A1 WILD-TYPE 44 56 26 36
'FAM19A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0397 (Fisher's exact test), Q value = 1

Table S1264.  Gene #127: 'FAM19A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
FAM19A1 MUTATED 0 5 2
FAM19A1 WILD-TYPE 67 54 41

Figure S77.  Get High-res Image Gene #127: 'FAM19A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'FAM19A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.637 (Fisher's exact test), Q value = 1

Table S1265.  Gene #127: 'FAM19A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
FAM19A1 MUTATED 3 5 5
FAM19A1 WILD-TYPE 90 74 102
'FAM19A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.768 (Fisher's exact test), Q value = 1

Table S1266.  Gene #127: 'FAM19A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
FAM19A1 MUTATED 3 7 3
FAM19A1 WILD-TYPE 70 115 81
'FAM19A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.769 (Fisher's exact test), Q value = 1

Table S1267.  Gene #127: 'FAM19A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
FAM19A1 MUTATED 3 7 3
FAM19A1 WILD-TYPE 65 110 82
'FAM19A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 1

Table S1268.  Gene #127: 'FAM19A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
FAM19A1 MUTATED 2 0 3 8
FAM19A1 WILD-TYPE 27 28 67 135
'FAM19A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.937 (Fisher's exact test), Q value = 1

Table S1269.  Gene #127: 'FAM19A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
FAM19A1 MUTATED 5 5 3
FAM19A1 WILD-TYPE 83 97 77
'FAM19A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S1270.  Gene #127: 'FAM19A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
FAM19A1 MUTATED 2 8 3 0
FAM19A1 WILD-TYPE 23 104 81 49
'CERKL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S1271.  Gene #128: 'CERKL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
CERKL MUTATED 10 5 3
CERKL WILD-TYPE 94 71 96
'CERKL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0254 (Fisher's exact test), Q value = 1

Table S1272.  Gene #128: 'CERKL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
CERKL MUTATED 3 12 3
CERKL WILD-TYPE 68 88 105

Figure S78.  Get High-res Image Gene #128: 'CERKL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'CERKL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.771 (Fisher's exact test), Q value = 1

Table S1273.  Gene #128: 'CERKL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
CERKL MUTATED 3 2 2 3
CERKL WILD-TYPE 44 55 25 35
'CERKL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.651 (Fisher's exact test), Q value = 1

Table S1274.  Gene #128: 'CERKL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
CERKL MUTATED 5 2 3
CERKL WILD-TYPE 62 57 40
'CERKL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.629 (Fisher's exact test), Q value = 1

Table S1275.  Gene #128: 'CERKL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
CERKL MUTATED 8 4 6
CERKL WILD-TYPE 85 75 101
'CERKL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S1276.  Gene #128: 'CERKL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
CERKL MUTATED 8 7 3
CERKL WILD-TYPE 65 115 81
'CERKL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S1277.  Gene #128: 'CERKL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
CERKL MUTATED 5 8 4
CERKL WILD-TYPE 63 109 81
'CERKL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.88 (Fisher's exact test), Q value = 1

Table S1278.  Gene #128: 'CERKL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
CERKL MUTATED 2 2 5 8
CERKL WILD-TYPE 27 26 65 135
'CERKL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1279.  Gene #128: 'CERKL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
CERKL MUTATED 6 6 5
CERKL WILD-TYPE 82 96 75
'CERKL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.563 (Fisher's exact test), Q value = 1

Table S1280.  Gene #128: 'CERKL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
CERKL MUTATED 2 8 6 1
CERKL WILD-TYPE 23 104 78 48
'OR4K2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0732 (Fisher's exact test), Q value = 1

Table S1281.  Gene #129: 'OR4K2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
OR4K2 MUTATED 11 3 14
OR4K2 WILD-TYPE 93 73 85
'OR4K2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00558 (Fisher's exact test), Q value = 1

Table S1282.  Gene #129: 'OR4K2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
OR4K2 MUTATED 1 15 12
OR4K2 WILD-TYPE 70 85 96

Figure S79.  Get High-res Image Gene #129: 'OR4K2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'OR4K2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.984 (Fisher's exact test), Q value = 1

Table S1283.  Gene #129: 'OR4K2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
OR4K2 MUTATED 5 7 2 4
OR4K2 WILD-TYPE 42 50 25 34
'OR4K2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0107 (Fisher's exact test), Q value = 1

Table S1284.  Gene #129: 'OR4K2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
OR4K2 MUTATED 5 12 1
OR4K2 WILD-TYPE 62 47 42

Figure S80.  Get High-res Image Gene #129: 'OR4K2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'OR4K2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.23 (Fisher's exact test), Q value = 1

Table S1285.  Gene #129: 'OR4K2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
OR4K2 MUTATED 7 12 9
OR4K2 WILD-TYPE 86 67 98
'OR4K2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S1286.  Gene #129: 'OR4K2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
OR4K2 MUTATED 5 17 6
OR4K2 WILD-TYPE 68 105 78
'OR4K2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.266 (Fisher's exact test), Q value = 1

Table S1287.  Gene #129: 'OR4K2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
OR4K2 MUTATED 10 10 6
OR4K2 WILD-TYPE 58 107 79
'OR4K2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.625 (Fisher's exact test), Q value = 1

Table S1288.  Gene #129: 'OR4K2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
OR4K2 MUTATED 4 1 7 14
OR4K2 WILD-TYPE 25 27 63 129
'OR4K2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.689 (Fisher's exact test), Q value = 1

Table S1289.  Gene #129: 'OR4K2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
OR4K2 MUTATED 10 10 6
OR4K2 WILD-TYPE 78 92 74
'OR4K2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S1290.  Gene #129: 'OR4K2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
OR4K2 MUTATED 4 11 8 3
OR4K2 WILD-TYPE 21 101 76 46
'GALNT14 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.137 (Fisher's exact test), Q value = 1

Table S1291.  Gene #130: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
GALNT14 MUTATED 9 2 10
GALNT14 WILD-TYPE 95 74 89
'GALNT14 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S1292.  Gene #130: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
GALNT14 MUTATED 4 9 8
GALNT14 WILD-TYPE 67 91 100
'GALNT14 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.419 (Fisher's exact test), Q value = 1

Table S1293.  Gene #130: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
GALNT14 MUTATED 5 4 0 3
GALNT14 WILD-TYPE 42 53 27 35
'GALNT14 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S1294.  Gene #130: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
GALNT14 MUTATED 4 5 3
GALNT14 WILD-TYPE 63 54 40
'GALNT14 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.403 (Fisher's exact test), Q value = 1

Table S1295.  Gene #130: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
GALNT14 MUTATED 6 4 11
GALNT14 WILD-TYPE 87 75 96
'GALNT14 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S1296.  Gene #130: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
GALNT14 MUTATED 5 8 8
GALNT14 WILD-TYPE 68 114 76
'GALNT14 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.744 (Fisher's exact test), Q value = 1

Table S1297.  Gene #130: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
GALNT14 MUTATED 6 9 5
GALNT14 WILD-TYPE 62 108 80
'GALNT14 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S1298.  Gene #130: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
GALNT14 MUTATED 2 0 4 14
GALNT14 WILD-TYPE 27 28 66 129
'GALNT14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.436 (Fisher's exact test), Q value = 1

Table S1299.  Gene #130: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
GALNT14 MUTATED 4 9 7
GALNT14 WILD-TYPE 84 93 73
'GALNT14 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.631 (Fisher's exact test), Q value = 1

Table S1300.  Gene #130: 'GALNT14 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
GALNT14 MUTATED 2 9 4 5
GALNT14 WILD-TYPE 23 103 80 44
'C12ORF50 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S1301.  Gene #131: 'C12ORF50 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
C12ORF50 MUTATED 12 3 8
C12ORF50 WILD-TYPE 92 73 91
'C12ORF50 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.466 (Fisher's exact test), Q value = 1

Table S1302.  Gene #131: 'C12ORF50 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
C12ORF50 MUTATED 5 11 7
C12ORF50 WILD-TYPE 66 89 101
'C12ORF50 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.621 (Fisher's exact test), Q value = 1

Table S1303.  Gene #131: 'C12ORF50 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
C12ORF50 MUTATED 5 4 4 5
C12ORF50 WILD-TYPE 42 53 23 33
'C12ORF50 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.719 (Fisher's exact test), Q value = 1

Table S1304.  Gene #131: 'C12ORF50 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
C12ORF50 MUTATED 6 6 6
C12ORF50 WILD-TYPE 61 53 37
'C12ORF50 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.87 (Fisher's exact test), Q value = 1

Table S1305.  Gene #131: 'C12ORF50 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
C12ORF50 MUTATED 7 6 10
C12ORF50 WILD-TYPE 86 73 97
'C12ORF50 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.664 (Fisher's exact test), Q value = 1

Table S1306.  Gene #131: 'C12ORF50 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
C12ORF50 MUTATED 6 12 5
C12ORF50 WILD-TYPE 67 110 79
'C12ORF50 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.567 (Fisher's exact test), Q value = 1

Table S1307.  Gene #131: 'C12ORF50 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
C12ORF50 MUTATED 4 9 9
C12ORF50 WILD-TYPE 64 108 76
'C12ORF50 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.583 (Fisher's exact test), Q value = 1

Table S1308.  Gene #131: 'C12ORF50 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
C12ORF50 MUTATED 2 4 6 10
C12ORF50 WILD-TYPE 27 24 64 133
'C12ORF50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S1309.  Gene #131: 'C12ORF50 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
C12ORF50 MUTATED 4 11 7
C12ORF50 WILD-TYPE 84 91 73
'C12ORF50 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.675 (Fisher's exact test), Q value = 1

Table S1310.  Gene #131: 'C12ORF50 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
C12ORF50 MUTATED 2 8 6 6
C12ORF50 WILD-TYPE 23 104 78 43
'GK2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.638 (Fisher's exact test), Q value = 1

Table S1311.  Gene #132: 'GK2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
GK2 MUTATED 11 11 10
GK2 WILD-TYPE 93 65 89
'GK2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.227 (Fisher's exact test), Q value = 1

Table S1312.  Gene #132: 'GK2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
GK2 MUTATED 6 16 10
GK2 WILD-TYPE 65 84 98
'GK2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S1313.  Gene #132: 'GK2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
GK2 MUTATED 8 5 1 5
GK2 WILD-TYPE 39 52 26 33
'GK2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0722 (Fisher's exact test), Q value = 1

Table S1314.  Gene #132: 'GK2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
GK2 MUTATED 9 9 1
GK2 WILD-TYPE 58 50 42
'GK2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1315.  Gene #132: 'GK2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
GK2 MUTATED 11 9 12
GK2 WILD-TYPE 82 70 95
'GK2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.678 (Fisher's exact test), Q value = 1

Table S1316.  Gene #132: 'GK2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
GK2 MUTATED 10 12 10
GK2 WILD-TYPE 63 110 74
'GK2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.424 (Fisher's exact test), Q value = 1

Table S1317.  Gene #132: 'GK2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
GK2 MUTATED 5 16 11
GK2 WILD-TYPE 63 101 74
'GK2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.882 (Fisher's exact test), Q value = 1

Table S1318.  Gene #132: 'GK2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
GK2 MUTATED 2 3 9 18
GK2 WILD-TYPE 27 25 61 125
'GK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.628 (Fisher's exact test), Q value = 1

Table S1319.  Gene #132: 'GK2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
GK2 MUTATED 8 14 10
GK2 WILD-TYPE 80 88 70
'GK2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.27 (Fisher's exact test), Q value = 1

Table S1320.  Gene #132: 'GK2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
GK2 MUTATED 1 17 11 3
GK2 WILD-TYPE 24 95 73 46
'RPAP1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S1321.  Gene #133: 'RPAP1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
RPAP1 MUTATED 6 3 4
RPAP1 WILD-TYPE 98 73 95
'RPAP1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S1322.  Gene #133: 'RPAP1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
RPAP1 MUTATED 2 4 7
RPAP1 WILD-TYPE 69 96 101
'RPAP1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.52 (Fisher's exact test), Q value = 1

Table S1323.  Gene #133: 'RPAP1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
RPAP1 MUTATED 2 2 3 2
RPAP1 WILD-TYPE 45 55 24 36
'RPAP1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S1324.  Gene #133: 'RPAP1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
RPAP1 MUTATED 5 1 3
RPAP1 WILD-TYPE 62 58 40
'RPAP1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1325.  Gene #133: 'RPAP1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
RPAP1 MUTATED 4 4 5
RPAP1 WILD-TYPE 89 75 102
'RPAP1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1326.  Gene #133: 'RPAP1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
RPAP1 MUTATED 3 6 4
RPAP1 WILD-TYPE 70 116 80
'RPAP1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.867 (Fisher's exact test), Q value = 1

Table S1327.  Gene #133: 'RPAP1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
RPAP1 MUTATED 2 6 4
RPAP1 WILD-TYPE 66 111 81
'RPAP1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.962 (Fisher's exact test), Q value = 1

Table S1328.  Gene #133: 'RPAP1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
RPAP1 MUTATED 1 1 4 6
RPAP1 WILD-TYPE 28 27 66 137
'RPAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S1329.  Gene #133: 'RPAP1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
RPAP1 MUTATED 2 7 3
RPAP1 WILD-TYPE 86 95 77
'RPAP1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.871 (Fisher's exact test), Q value = 1

Table S1330.  Gene #133: 'RPAP1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
RPAP1 MUTATED 1 4 4 3
RPAP1 WILD-TYPE 24 108 80 46
'IDO2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.531 (Fisher's exact test), Q value = 1

Table S1331.  Gene #134: 'IDO2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
IDO2 MUTATED 6 3 8
IDO2 WILD-TYPE 98 73 91
'IDO2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S1332.  Gene #134: 'IDO2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
IDO2 MUTATED 2 6 9
IDO2 WILD-TYPE 69 94 99
'IDO2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0969 (Fisher's exact test), Q value = 1

Table S1333.  Gene #134: 'IDO2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
IDO2 MUTATED 5 3 0 0
IDO2 WILD-TYPE 42 54 27 38
'IDO2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.533 (Fisher's exact test), Q value = 1

Table S1334.  Gene #134: 'IDO2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
IDO2 MUTATED 2 3 3
IDO2 WILD-TYPE 65 56 40
'IDO2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.312 (Fisher's exact test), Q value = 1

Table S1335.  Gene #134: 'IDO2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
IDO2 MUTATED 3 7 7
IDO2 WILD-TYPE 90 72 100
'IDO2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.684 (Fisher's exact test), Q value = 1

Table S1336.  Gene #134: 'IDO2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
IDO2 MUTATED 3 9 5
IDO2 WILD-TYPE 70 113 79
'IDO2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S1337.  Gene #134: 'IDO2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
IDO2 MUTATED 2 8 7
IDO2 WILD-TYPE 66 109 78
'IDO2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S1338.  Gene #134: 'IDO2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
IDO2 MUTATED 1 0 6 10
IDO2 WILD-TYPE 28 28 64 133
'IDO2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.6 (Fisher's exact test), Q value = 1

Table S1339.  Gene #134: 'IDO2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
IDO2 MUTATED 5 5 7
IDO2 WILD-TYPE 83 97 73
'IDO2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.265 (Fisher's exact test), Q value = 1

Table S1340.  Gene #134: 'IDO2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
IDO2 MUTATED 0 5 7 5
IDO2 WILD-TYPE 25 107 77 44
'ZIM3 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.119 (Fisher's exact test), Q value = 1

Table S1341.  Gene #135: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
ZIM3 MUTATED 8 4 14
ZIM3 WILD-TYPE 96 72 85
'ZIM3 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S1342.  Gene #135: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
ZIM3 MUTATED 3 10 13
ZIM3 WILD-TYPE 68 90 95
'ZIM3 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S1343.  Gene #135: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
ZIM3 MUTATED 6 4 2 2
ZIM3 WILD-TYPE 41 53 25 36
'ZIM3 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S1344.  Gene #135: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
ZIM3 MUTATED 3 7 4
ZIM3 WILD-TYPE 64 52 39
'ZIM3 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S1345.  Gene #135: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
ZIM3 MUTATED 9 11 6
ZIM3 WILD-TYPE 84 68 101
'ZIM3 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.921 (Fisher's exact test), Q value = 1

Table S1346.  Gene #135: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
ZIM3 MUTATED 7 12 7
ZIM3 WILD-TYPE 66 110 77
'ZIM3 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.144 (Fisher's exact test), Q value = 1

Table S1347.  Gene #135: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
ZIM3 MUTATED 7 7 12
ZIM3 WILD-TYPE 61 110 73
'ZIM3 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S1348.  Gene #135: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
ZIM3 MUTATED 2 3 10 11
ZIM3 WILD-TYPE 27 25 60 132
'ZIM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.293 (Fisher's exact test), Q value = 1

Table S1349.  Gene #135: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
ZIM3 MUTATED 8 7 11
ZIM3 WILD-TYPE 80 95 69
'ZIM3 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.123 (Fisher's exact test), Q value = 1

Table S1350.  Gene #135: 'ZIM3 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
ZIM3 MUTATED 2 6 13 5
ZIM3 WILD-TYPE 23 106 71 44
'MAP2K1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0353 (Fisher's exact test), Q value = 1

Table S1351.  Gene #136: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
MAP2K1 MUTATED 1 5 8
MAP2K1 WILD-TYPE 103 71 91

Figure S81.  Get High-res Image Gene #136: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'MAP2K1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00977 (Fisher's exact test), Q value = 1

Table S1352.  Gene #136: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
MAP2K1 MUTATED 1 2 11
MAP2K1 WILD-TYPE 70 98 97

Figure S82.  Get High-res Image Gene #136: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'MAP2K1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.389 (Fisher's exact test), Q value = 1

Table S1353.  Gene #136: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
MAP2K1 MUTATED 5 2 1 1
MAP2K1 WILD-TYPE 42 55 26 37
'MAP2K1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0861 (Fisher's exact test), Q value = 1

Table S1354.  Gene #136: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
MAP2K1 MUTATED 3 1 5
MAP2K1 WILD-TYPE 64 58 38
'MAP2K1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.382 (Fisher's exact test), Q value = 1

Table S1355.  Gene #136: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
MAP2K1 MUTATED 6 5 3
MAP2K1 WILD-TYPE 87 74 104
'MAP2K1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.245 (Fisher's exact test), Q value = 1

Table S1356.  Gene #136: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
MAP2K1 MUTATED 6 6 2
MAP2K1 WILD-TYPE 67 116 82
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S1357.  Gene #136: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
MAP2K1 MUTATED 2 4 8
MAP2K1 WILD-TYPE 66 113 77
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.066 (Fisher's exact test), Q value = 1

Table S1358.  Gene #136: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
MAP2K1 MUTATED 2 4 4 4
MAP2K1 WILD-TYPE 27 24 66 139
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.182 (Fisher's exact test), Q value = 1

Table S1359.  Gene #136: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
MAP2K1 MUTATED 2 5 7
MAP2K1 WILD-TYPE 86 97 73
'MAP2K1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.554 (Fisher's exact test), Q value = 1

Table S1360.  Gene #136: 'MAP2K1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
MAP2K1 MUTATED 2 4 6 2
MAP2K1 WILD-TYPE 23 108 78 47
'GZMA MUTATION STATUS' versus 'CN_CNMF'

P value = 0.803 (Fisher's exact test), Q value = 1

Table S1361.  Gene #137: 'GZMA MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
GZMA MUTATED 4 2 5
GZMA WILD-TYPE 100 74 94
'GZMA MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.364 (Fisher's exact test), Q value = 1

Table S1362.  Gene #137: 'GZMA MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
GZMA MUTATED 1 6 4
GZMA WILD-TYPE 70 94 104
'GZMA MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.748 (Fisher's exact test), Q value = 1

Table S1363.  Gene #137: 'GZMA MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
GZMA MUTATED 4 2 1 2
GZMA WILD-TYPE 43 55 26 36
'GZMA MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1364.  Gene #137: 'GZMA MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
GZMA MUTATED 4 3 2
GZMA WILD-TYPE 63 56 41
'GZMA MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S1365.  Gene #137: 'GZMA MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
GZMA MUTATED 3 3 5
GZMA WILD-TYPE 90 76 102
'GZMA MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.796 (Fisher's exact test), Q value = 1

Table S1366.  Gene #137: 'GZMA MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
GZMA MUTATED 2 6 3
GZMA WILD-TYPE 71 116 81
'GZMA MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.579 (Fisher's exact test), Q value = 1

Table S1367.  Gene #137: 'GZMA MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
GZMA MUTATED 4 5 2
GZMA WILD-TYPE 64 112 83
'GZMA MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.891 (Fisher's exact test), Q value = 1

Table S1368.  Gene #137: 'GZMA MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
GZMA MUTATED 1 0 3 7
GZMA WILD-TYPE 28 28 67 136
'GZMA MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.547 (Fisher's exact test), Q value = 1

Table S1369.  Gene #137: 'GZMA MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
GZMA MUTATED 3 6 2
GZMA WILD-TYPE 85 96 78
'GZMA MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S1370.  Gene #137: 'GZMA MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
GZMA MUTATED 1 7 3 0
GZMA WILD-TYPE 24 105 81 49
'ACTC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0229 (Fisher's exact test), Q value = 1

Table S1371.  Gene #138: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
ACTC1 MUTATED 7 0 8
ACTC1 WILD-TYPE 97 76 91

Figure S83.  Get High-res Image Gene #138: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'ACTC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.328 (Fisher's exact test), Q value = 1

Table S1372.  Gene #138: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
ACTC1 MUTATED 2 8 5
ACTC1 WILD-TYPE 69 92 103
'ACTC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S1373.  Gene #138: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
ACTC1 MUTATED 5 2 1 2
ACTC1 WILD-TYPE 42 55 26 36
'ACTC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S1374.  Gene #138: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
ACTC1 MUTATED 2 5 3
ACTC1 WILD-TYPE 65 54 40
'ACTC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.202 (Fisher's exact test), Q value = 1

Table S1375.  Gene #138: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
ACTC1 MUTATED 2 6 7
ACTC1 WILD-TYPE 91 73 100
'ACTC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.133 (Fisher's exact test), Q value = 1

Table S1376.  Gene #138: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
ACTC1 MUTATED 1 7 7
ACTC1 WILD-TYPE 72 115 77
'ACTC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.449 (Fisher's exact test), Q value = 1

Table S1377.  Gene #138: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
ACTC1 MUTATED 3 5 7
ACTC1 WILD-TYPE 65 112 78
'ACTC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S1378.  Gene #138: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
ACTC1 MUTATED 3 0 3 9
ACTC1 WILD-TYPE 26 28 67 134
'ACTC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.485 (Fisher's exact test), Q value = 1

Table S1379.  Gene #138: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
ACTC1 MUTATED 3 6 6
ACTC1 WILD-TYPE 85 96 74
'ACTC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.0255 (Fisher's exact test), Q value = 1

Table S1380.  Gene #138: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
ACTC1 MUTATED 2 3 3 7
ACTC1 WILD-TYPE 23 109 81 42

Figure S84.  Get High-res Image Gene #138: 'ACTC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'KCNB2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.222 (Fisher's exact test), Q value = 1

Table S1381.  Gene #139: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
KCNB2 MUTATED 17 16 26
KCNB2 WILD-TYPE 87 60 73
'KCNB2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.00426 (Fisher's exact test), Q value = 1

Table S1382.  Gene #139: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
KCNB2 MUTATED 6 28 25
KCNB2 WILD-TYPE 65 72 83

Figure S85.  Get High-res Image Gene #139: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'KCNB2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.235 (Fisher's exact test), Q value = 1

Table S1383.  Gene #139: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
KCNB2 MUTATED 13 10 10 8
KCNB2 WILD-TYPE 34 47 17 30
'KCNB2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.656 (Fisher's exact test), Q value = 1

Table S1384.  Gene #139: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
KCNB2 MUTATED 17 12 12
KCNB2 WILD-TYPE 50 47 31
'KCNB2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S1385.  Gene #139: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
KCNB2 MUTATED 15 19 25
KCNB2 WILD-TYPE 78 60 82
'KCNB2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.481 (Fisher's exact test), Q value = 1

Table S1386.  Gene #139: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
KCNB2 MUTATED 12 29 18
KCNB2 WILD-TYPE 61 93 66
'KCNB2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.264 (Fisher's exact test), Q value = 1

Table S1387.  Gene #139: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
KCNB2 MUTATED 19 21 17
KCNB2 WILD-TYPE 49 96 68
'KCNB2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S1388.  Gene #139: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
KCNB2 MUTATED 9 4 13 31
KCNB2 WILD-TYPE 20 24 57 112
'KCNB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.493 (Fisher's exact test), Q value = 1

Table S1389.  Gene #139: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
KCNB2 MUTATED 22 21 14
KCNB2 WILD-TYPE 66 81 66
'KCNB2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.161 (Fisher's exact test), Q value = 1

Table S1390.  Gene #139: 'KCNB2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
KCNB2 MUTATED 7 29 15 6
KCNB2 WILD-TYPE 18 83 69 43
'ADAMTS2 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0648 (Fisher's exact test), Q value = 1

Table S1391.  Gene #140: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
ADAMTS2 MUTATED 12 3 14
ADAMTS2 WILD-TYPE 92 73 85
'ADAMTS2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.184 (Fisher's exact test), Q value = 1

Table S1392.  Gene #140: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
ADAMTS2 MUTATED 5 15 9
ADAMTS2 WILD-TYPE 66 85 99
'ADAMTS2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.18 (Fisher's exact test), Q value = 1

Table S1393.  Gene #140: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
ADAMTS2 MUTATED 6 10 1 2
ADAMTS2 WILD-TYPE 41 47 26 36
'ADAMTS2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S1394.  Gene #140: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
ADAMTS2 MUTATED 8 7 4
ADAMTS2 WILD-TYPE 59 52 39
'ADAMTS2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.778 (Fisher's exact test), Q value = 1

Table S1395.  Gene #140: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
ADAMTS2 MUTATED 8 9 12
ADAMTS2 WILD-TYPE 85 70 95
'ADAMTS2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.528 (Fisher's exact test), Q value = 1

Table S1396.  Gene #140: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
ADAMTS2 MUTATED 5 14 10
ADAMTS2 WILD-TYPE 68 108 74
'ADAMTS2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.453 (Fisher's exact test), Q value = 1

Table S1397.  Gene #140: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
ADAMTS2 MUTATED 9 12 6
ADAMTS2 WILD-TYPE 59 105 79
'ADAMTS2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S1398.  Gene #140: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
ADAMTS2 MUTATED 3 4 4 16
ADAMTS2 WILD-TYPE 26 24 66 127
'ADAMTS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.368 (Fisher's exact test), Q value = 1

Table S1399.  Gene #140: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
ADAMTS2 MUTATED 11 11 5
ADAMTS2 WILD-TYPE 77 91 75
'ADAMTS2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.285 (Fisher's exact test), Q value = 1

Table S1400.  Gene #140: 'ADAMTS2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
ADAMTS2 MUTATED 2 16 5 4
ADAMTS2 WILD-TYPE 23 96 79 45
'IL7R MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1401.  Gene #141: 'IL7R MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
IL7R MUTATED 11 8 11
IL7R WILD-TYPE 93 68 88
'IL7R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0258 (Fisher's exact test), Q value = 1

Table S1402.  Gene #141: 'IL7R MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
IL7R MUTATED 3 17 10
IL7R WILD-TYPE 68 83 98

Figure S86.  Get High-res Image Gene #141: 'IL7R MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'IL7R MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.309 (Fisher's exact test), Q value = 1

Table S1403.  Gene #141: 'IL7R MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
IL7R MUTATED 4 7 1 7
IL7R WILD-TYPE 43 50 26 31
'IL7R MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0304 (Fisher's exact test), Q value = 1

Table S1404.  Gene #141: 'IL7R MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
IL7R MUTATED 5 12 2
IL7R WILD-TYPE 62 47 41

Figure S87.  Get High-res Image Gene #141: 'IL7R MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'IL7R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.582 (Fisher's exact test), Q value = 1

Table S1405.  Gene #141: 'IL7R MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
IL7R MUTATED 9 11 10
IL7R WILD-TYPE 84 68 97
'IL7R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S1406.  Gene #141: 'IL7R MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
IL7R MUTATED 8 16 6
IL7R WILD-TYPE 65 106 78
'IL7R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0048 (Fisher's exact test), Q value = 1

Table S1407.  Gene #141: 'IL7R MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
IL7R MUTATED 14 9 4
IL7R WILD-TYPE 54 108 81

Figure S88.  Get High-res Image Gene #141: 'IL7R MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'IL7R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.414 (Fisher's exact test), Q value = 1

Table S1408.  Gene #141: 'IL7R MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
IL7R MUTATED 5 1 7 14
IL7R WILD-TYPE 24 27 63 129
'IL7R MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0282 (Fisher's exact test), Q value = 1

Table S1409.  Gene #141: 'IL7R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
IL7R MUTATED 15 8 4
IL7R WILD-TYPE 73 94 76

Figure S89.  Get High-res Image Gene #141: 'IL7R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

'IL7R MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.193 (Fisher's exact test), Q value = 1

Table S1410.  Gene #141: 'IL7R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
IL7R MUTATED 5 12 8 2
IL7R WILD-TYPE 20 100 76 47
'DAAM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1411.  Gene #142: 'DAAM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
DAAM2 MUTATED 3 2 2
DAAM2 WILD-TYPE 101 74 97
'DAAM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0433 (Fisher's exact test), Q value = 1

Table S1412.  Gene #142: 'DAAM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
DAAM2 MUTATED 2 5 0
DAAM2 WILD-TYPE 69 95 108

Figure S90.  Get High-res Image Gene #142: 'DAAM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'DAAM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.441 (Fisher's exact test), Q value = 1

Table S1413.  Gene #142: 'DAAM2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
DAAM2 MUTATED 4 1 2
DAAM2 WILD-TYPE 89 78 105
'DAAM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S1414.  Gene #142: 'DAAM2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
DAAM2 MUTATED 4 1 2
DAAM2 WILD-TYPE 69 121 82
'DAAM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S1415.  Gene #142: 'DAAM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
DAAM2 MUTATED 3 3 1
DAAM2 WILD-TYPE 65 114 84
'DAAM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S1416.  Gene #142: 'DAAM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
DAAM2 MUTATED 1 1 2 3
DAAM2 WILD-TYPE 28 27 68 140
'DAAM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.442 (Fisher's exact test), Q value = 1

Table S1417.  Gene #142: 'DAAM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
DAAM2 MUTATED 4 2 1
DAAM2 WILD-TYPE 84 100 79
'DAAM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S1418.  Gene #142: 'DAAM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
DAAM2 MUTATED 1 3 2 1
DAAM2 WILD-TYPE 24 109 82 48
'OR4N4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.00826 (Fisher's exact test), Q value = 1

Table S1419.  Gene #143: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
OR4N4 MUTATED 3 1 11
OR4N4 WILD-TYPE 101 75 88

Figure S91.  Get High-res Image Gene #143: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'OR4N4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.451 (Fisher's exact test), Q value = 1

Table S1420.  Gene #143: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
OR4N4 MUTATED 2 5 8
OR4N4 WILD-TYPE 69 95 100
'OR4N4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.311 (Fisher's exact test), Q value = 1

Table S1421.  Gene #143: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
OR4N4 MUTATED 4 3 1 0
OR4N4 WILD-TYPE 43 54 26 38
'OR4N4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.418 (Fisher's exact test), Q value = 1

Table S1422.  Gene #143: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
OR4N4 MUTATED 4 1 3
OR4N4 WILD-TYPE 63 58 40
'OR4N4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.00176 (Fisher's exact test), Q value = 1

Table S1423.  Gene #143: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
OR4N4 MUTATED 0 9 6
OR4N4 WILD-TYPE 93 70 101

Figure S92.  Get High-res Image Gene #143: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'OR4N4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.11 (Fisher's exact test), Q value = 1

Table S1424.  Gene #143: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
OR4N4 MUTATED 1 10 4
OR4N4 WILD-TYPE 72 112 80
'OR4N4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.169 (Fisher's exact test), Q value = 1

Table S1425.  Gene #143: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
OR4N4 MUTATED 3 3 7
OR4N4 WILD-TYPE 65 114 78
'OR4N4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.86 (Fisher's exact test), Q value = 1

Table S1426.  Gene #143: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
OR4N4 MUTATED 1 2 4 6
OR4N4 WILD-TYPE 28 26 66 137
'OR4N4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.881 (Fisher's exact test), Q value = 1

Table S1427.  Gene #143: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
OR4N4 MUTATED 5 4 4
OR4N4 WILD-TYPE 83 98 76
'OR4N4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.842 (Fisher's exact test), Q value = 1

Table S1428.  Gene #143: 'OR4N4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
OR4N4 MUTATED 1 4 5 3
OR4N4 WILD-TYPE 24 108 79 46
'BMP5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.17 (Fisher's exact test), Q value = 1

Table S1429.  Gene #144: 'BMP5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
BMP5 MUTATED 14 4 8
BMP5 WILD-TYPE 90 72 91
'BMP5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.000206 (Fisher's exact test), Q value = 0.35

Table S1430.  Gene #144: 'BMP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
BMP5 MUTATED 4 19 3
BMP5 WILD-TYPE 67 81 105

Figure S93.  Get High-res Image Gene #144: 'BMP5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'BMP5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.113 (Fisher's exact test), Q value = 1

Table S1431.  Gene #144: 'BMP5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
BMP5 MUTATED 2 7 0 1
BMP5 WILD-TYPE 45 50 27 37
'BMP5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0331 (Fisher's exact test), Q value = 1

Table S1432.  Gene #144: 'BMP5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
BMP5 MUTATED 3 7 0
BMP5 WILD-TYPE 64 52 43

Figure S94.  Get High-res Image Gene #144: 'BMP5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'BMP5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.669 (Fisher's exact test), Q value = 1

Table S1433.  Gene #144: 'BMP5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
BMP5 MUTATED 10 8 8
BMP5 WILD-TYPE 83 71 99
'BMP5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1434.  Gene #144: 'BMP5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
BMP5 MUTATED 7 11 8
BMP5 WILD-TYPE 66 111 76
'BMP5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.738 (Fisher's exact test), Q value = 1

Table S1435.  Gene #144: 'BMP5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
BMP5 MUTATED 6 12 6
BMP5 WILD-TYPE 62 105 79
'BMP5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.677 (Fisher's exact test), Q value = 1

Table S1436.  Gene #144: 'BMP5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
BMP5 MUTATED 3 1 5 15
BMP5 WILD-TYPE 26 27 65 128
'BMP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.807 (Fisher's exact test), Q value = 1

Table S1437.  Gene #144: 'BMP5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
BMP5 MUTATED 9 9 6
BMP5 WILD-TYPE 79 93 74
'BMP5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.804 (Fisher's exact test), Q value = 1

Table S1438.  Gene #144: 'BMP5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
BMP5 MUTATED 3 11 6 4
BMP5 WILD-TYPE 22 101 78 45
'RAPGEF5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.652 (Fisher's exact test), Q value = 1

Table S1439.  Gene #145: 'RAPGEF5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
RAPGEF5 MUTATED 4 5 6
RAPGEF5 WILD-TYPE 100 71 93
'RAPGEF5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1440.  Gene #145: 'RAPGEF5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
RAPGEF5 MUTATED 4 5 6
RAPGEF5 WILD-TYPE 67 95 102
'RAPGEF5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.794 (Fisher's exact test), Q value = 1

Table S1441.  Gene #145: 'RAPGEF5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
RAPGEF5 MUTATED 3 2 1 3
RAPGEF5 WILD-TYPE 44 55 26 35
'RAPGEF5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.831 (Fisher's exact test), Q value = 1

Table S1442.  Gene #145: 'RAPGEF5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
RAPGEF5 MUTATED 3 3 3
RAPGEF5 WILD-TYPE 64 56 40
'RAPGEF5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S1443.  Gene #145: 'RAPGEF5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
RAPGEF5 MUTATED 7 4 4
RAPGEF5 WILD-TYPE 86 75 103
'RAPGEF5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.475 (Fisher's exact test), Q value = 1

Table S1444.  Gene #145: 'RAPGEF5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
RAPGEF5 MUTATED 2 7 6
RAPGEF5 WILD-TYPE 71 115 78
'RAPGEF5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.319 (Fisher's exact test), Q value = 1

Table S1445.  Gene #145: 'RAPGEF5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
RAPGEF5 MUTATED 6 5 3
RAPGEF5 WILD-TYPE 62 112 82
'RAPGEF5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S1446.  Gene #145: 'RAPGEF5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
RAPGEF5 MUTATED 4 1 3 6
RAPGEF5 WILD-TYPE 25 27 67 137
'RAPGEF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.391 (Fisher's exact test), Q value = 1

Table S1447.  Gene #145: 'RAPGEF5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
RAPGEF5 MUTATED 7 4 3
RAPGEF5 WILD-TYPE 81 98 77
'RAPGEF5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.343 (Fisher's exact test), Q value = 1

Table S1448.  Gene #145: 'RAPGEF5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
RAPGEF5 MUTATED 3 6 4 1
RAPGEF5 WILD-TYPE 22 106 80 48
'HNF4G MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0379 (Fisher's exact test), Q value = 1

Table S1449.  Gene #146: 'HNF4G MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
HNF4G MUTATED 11 2 13
HNF4G WILD-TYPE 93 74 86

Figure S95.  Get High-res Image Gene #146: 'HNF4G MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'HNF4G MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.234 (Fisher's exact test), Q value = 1

Table S1450.  Gene #146: 'HNF4G MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
HNF4G MUTATED 6 6 14
HNF4G WILD-TYPE 65 94 94
'HNF4G MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.44 (Fisher's exact test), Q value = 1

Table S1451.  Gene #146: 'HNF4G MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
HNF4G MUTATED 2 7 1 2
HNF4G WILD-TYPE 45 50 26 36
'HNF4G MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.698 (Fisher's exact test), Q value = 1

Table S1452.  Gene #146: 'HNF4G MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
HNF4G MUTATED 6 3 3
HNF4G WILD-TYPE 61 56 40
'HNF4G MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S1453.  Gene #146: 'HNF4G MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
HNF4G MUTATED 9 10 7
HNF4G WILD-TYPE 84 69 100
'HNF4G MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S1454.  Gene #146: 'HNF4G MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
HNF4G MUTATED 4 11 11
HNF4G WILD-TYPE 69 111 73
'HNF4G MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.178 (Fisher's exact test), Q value = 1

Table S1455.  Gene #146: 'HNF4G MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
HNF4G MUTATED 4 9 12
HNF4G WILD-TYPE 64 108 73
'HNF4G MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S1456.  Gene #146: 'HNF4G MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
HNF4G MUTATED 1 4 6 14
HNF4G WILD-TYPE 28 24 64 129
'HNF4G MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.353 (Fisher's exact test), Q value = 1

Table S1457.  Gene #146: 'HNF4G MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
HNF4G MUTATED 5 11 9
HNF4G WILD-TYPE 83 91 71
'HNF4G MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.821 (Fisher's exact test), Q value = 1

Table S1458.  Gene #146: 'HNF4G MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
HNF4G MUTATED 1 10 9 5
HNF4G WILD-TYPE 24 102 75 44
'C8B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S1459.  Gene #147: 'C8B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
C8B MUTATED 12 13 13
C8B WILD-TYPE 92 63 86
'C8B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1460.  Gene #147: 'C8B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
C8B MUTATED 9 14 15
C8B WILD-TYPE 62 86 93
'C8B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0598 (Fisher's exact test), Q value = 1

Table S1461.  Gene #147: 'C8B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
C8B MUTATED 12 5 2 8
C8B WILD-TYPE 35 52 25 30
'C8B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.341 (Fisher's exact test), Q value = 1

Table S1462.  Gene #147: 'C8B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
C8B MUTATED 9 8 10
C8B WILD-TYPE 58 51 33
'C8B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.595 (Fisher's exact test), Q value = 1

Table S1463.  Gene #147: 'C8B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
C8B MUTATED 15 11 12
C8B WILD-TYPE 78 68 95
'C8B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.188 (Fisher's exact test), Q value = 1

Table S1464.  Gene #147: 'C8B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
C8B MUTATED 13 18 7
C8B WILD-TYPE 60 104 77
'C8B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1465.  Gene #147: 'C8B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
C8B MUTATED 9 16 12
C8B WILD-TYPE 59 101 73
'C8B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.349 (Fisher's exact test), Q value = 1

Table S1466.  Gene #147: 'C8B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
C8B MUTATED 6 2 12 17
C8B WILD-TYPE 23 26 58 126
'C8B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.516 (Fisher's exact test), Q value = 1

Table S1467.  Gene #147: 'C8B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
C8B MUTATED 9 16 12
C8B WILD-TYPE 79 86 68
'C8B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.247 (Fisher's exact test), Q value = 1

Table S1468.  Gene #147: 'C8B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
C8B MUTATED 5 15 14 3
C8B WILD-TYPE 20 97 70 46
'CRNN MUTATION STATUS' versus 'CN_CNMF'

P value = 0.487 (Fisher's exact test), Q value = 1

Table S1469.  Gene #148: 'CRNN MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
CRNN MUTATED 10 5 5
CRNN WILD-TYPE 94 71 94
'CRNN MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.122 (Fisher's exact test), Q value = 1

Table S1470.  Gene #148: 'CRNN MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
CRNN MUTATED 2 11 7
CRNN WILD-TYPE 69 89 101
'CRNN MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.00275 (Fisher's exact test), Q value = 1

Table S1471.  Gene #148: 'CRNN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
CRNN MUTATED 1 1 5 6
CRNN WILD-TYPE 46 56 22 32

Figure S96.  Get High-res Image Gene #148: 'CRNN MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

'CRNN MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S1472.  Gene #148: 'CRNN MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
CRNN MUTATED 8 3 2
CRNN WILD-TYPE 59 56 41
'CRNN MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.154 (Fisher's exact test), Q value = 1

Table S1473.  Gene #148: 'CRNN MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
CRNN MUTATED 3 6 11
CRNN WILD-TYPE 90 73 96
'CRNN MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.179 (Fisher's exact test), Q value = 1

Table S1474.  Gene #148: 'CRNN MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
CRNN MUTATED 2 12 6
CRNN WILD-TYPE 71 110 78
'CRNN MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.263 (Fisher's exact test), Q value = 1

Table S1475.  Gene #148: 'CRNN MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
CRNN MUTATED 2 11 6
CRNN WILD-TYPE 66 106 79
'CRNN MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.69 (Fisher's exact test), Q value = 1

Table S1476.  Gene #148: 'CRNN MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
CRNN MUTATED 1 1 4 13
CRNN WILD-TYPE 28 27 66 130
'CRNN MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S1477.  Gene #148: 'CRNN MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
CRNN MUTATED 5 9 5
CRNN WILD-TYPE 83 93 75
'CRNN MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.585 (Fisher's exact test), Q value = 1

Table S1478.  Gene #148: 'CRNN MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
CRNN MUTATED 1 11 4 3
CRNN WILD-TYPE 24 101 80 46
'DACH1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.41 (Fisher's exact test), Q value = 1

Table S1479.  Gene #149: 'DACH1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
DACH1 MUTATED 8 5 12
DACH1 WILD-TYPE 96 71 87
'DACH1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0786 (Fisher's exact test), Q value = 1

Table S1480.  Gene #149: 'DACH1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
DACH1 MUTATED 2 12 11
DACH1 WILD-TYPE 69 88 97
'DACH1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.185 (Fisher's exact test), Q value = 1

Table S1481.  Gene #149: 'DACH1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
DACH1 MUTATED 7 3 2 1
DACH1 WILD-TYPE 40 54 25 37
'DACH1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1482.  Gene #149: 'DACH1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
DACH1 MUTATED 5 5 3
DACH1 WILD-TYPE 62 54 40
'DACH1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.43 (Fisher's exact test), Q value = 1

Table S1483.  Gene #149: 'DACH1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
DACH1 MUTATED 7 10 8
DACH1 WILD-TYPE 86 69 99
'DACH1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.49 (Fisher's exact test), Q value = 1

Table S1484.  Gene #149: 'DACH1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
DACH1 MUTATED 5 14 6
DACH1 WILD-TYPE 68 108 78
'DACH1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.488 (Fisher's exact test), Q value = 1

Table S1485.  Gene #149: 'DACH1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
DACH1 MUTATED 8 8 7
DACH1 WILD-TYPE 60 109 78
'DACH1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.0797 (Fisher's exact test), Q value = 1

Table S1486.  Gene #149: 'DACH1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
DACH1 MUTATED 5 0 8 10
DACH1 WILD-TYPE 24 28 62 133
'DACH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S1487.  Gene #149: 'DACH1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
DACH1 MUTATED 11 7 5
DACH1 WILD-TYPE 77 95 75
'DACH1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.274 (Fisher's exact test), Q value = 1

Table S1488.  Gene #149: 'DACH1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
DACH1 MUTATED 4 8 9 2
DACH1 WILD-TYPE 21 104 75 47
'OPN5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.824 (Fisher's exact test), Q value = 1

Table S1489.  Gene #150: 'OPN5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
OPN5 MUTATED 3 3 2
OPN5 WILD-TYPE 101 73 97
'OPN5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1490.  Gene #150: 'OPN5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
OPN5 MUTATED 2 3 3
OPN5 WILD-TYPE 69 97 105
'OPN5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.929 (Fisher's exact test), Q value = 1

Table S1491.  Gene #150: 'OPN5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
OPN5 MUTATED 2 2 0 1
OPN5 WILD-TYPE 45 55 27 37
'OPN5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1492.  Gene #150: 'OPN5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
OPN5 MUTATED 2 2 1
OPN5 WILD-TYPE 65 57 42
'OPN5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.739 (Fisher's exact test), Q value = 1

Table S1493.  Gene #150: 'OPN5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
OPN5 MUTATED 3 3 2
OPN5 WILD-TYPE 90 76 105
'OPN5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.596 (Fisher's exact test), Q value = 1

Table S1494.  Gene #150: 'OPN5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
OPN5 MUTATED 3 4 1
OPN5 WILD-TYPE 70 118 83
'OPN5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1495.  Gene #150: 'OPN5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
OPN5 MUTATED 2 3 2
OPN5 WILD-TYPE 66 114 83
'OPN5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.723 (Fisher's exact test), Q value = 1

Table S1496.  Gene #150: 'OPN5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
OPN5 MUTATED 1 1 2 3
OPN5 WILD-TYPE 28 27 68 140
'OPN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1497.  Gene #150: 'OPN5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
OPN5 MUTATED 2 3 2
OPN5 WILD-TYPE 86 99 78
'OPN5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.889 (Fisher's exact test), Q value = 1

Table S1498.  Gene #150: 'OPN5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
OPN5 MUTATED 1 3 2 1
OPN5 WILD-TYPE 24 109 82 48
'ZSWIM2 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1499.  Gene #151: 'ZSWIM2 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
ZSWIM2 MUTATED 11 8 11
ZSWIM2 WILD-TYPE 93 68 88
'ZSWIM2 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.639 (Fisher's exact test), Q value = 1

Table S1500.  Gene #151: 'ZSWIM2 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
ZSWIM2 MUTATED 6 13 11
ZSWIM2 WILD-TYPE 65 87 97
'ZSWIM2 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.467 (Fisher's exact test), Q value = 1

Table S1501.  Gene #151: 'ZSWIM2 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
ZSWIM2 MUTATED 5 5 2 7
ZSWIM2 WILD-TYPE 42 52 25 31
'ZSWIM2 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.125 (Fisher's exact test), Q value = 1

Table S1502.  Gene #151: 'ZSWIM2 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
ZSWIM2 MUTATED 11 3 5
ZSWIM2 WILD-TYPE 56 56 38
'ZSWIM2 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.862 (Fisher's exact test), Q value = 1

Table S1503.  Gene #151: 'ZSWIM2 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
ZSWIM2 MUTATED 9 8 13
ZSWIM2 WILD-TYPE 84 71 94
'ZSWIM2 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.129 (Fisher's exact test), Q value = 1

Table S1504.  Gene #151: 'ZSWIM2 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
ZSWIM2 MUTATED 4 13 13
ZSWIM2 WILD-TYPE 69 109 71
'ZSWIM2 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S1505.  Gene #151: 'ZSWIM2 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
ZSWIM2 MUTATED 7 14 9
ZSWIM2 WILD-TYPE 61 103 76
'ZSWIM2 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.648 (Fisher's exact test), Q value = 1

Table S1506.  Gene #151: 'ZSWIM2 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
ZSWIM2 MUTATED 3 1 8 18
ZSWIM2 WILD-TYPE 26 27 62 125
'ZSWIM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.556 (Fisher's exact test), Q value = 1

Table S1507.  Gene #151: 'ZSWIM2 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
ZSWIM2 MUTATED 9 14 7
ZSWIM2 WILD-TYPE 79 88 73
'ZSWIM2 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.105 (Fisher's exact test), Q value = 1

Table S1508.  Gene #151: 'ZSWIM2 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
ZSWIM2 MUTATED 1 18 9 2
ZSWIM2 WILD-TYPE 24 94 75 47
'MPP6 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.435 (Fisher's exact test), Q value = 1

Table S1509.  Gene #152: 'MPP6 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
MPP6 MUTATED 6 2 7
MPP6 WILD-TYPE 98 74 92
'MPP6 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.498 (Fisher's exact test), Q value = 1

Table S1510.  Gene #152: 'MPP6 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
MPP6 MUTATED 2 7 6
MPP6 WILD-TYPE 69 93 102
'MPP6 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.503 (Fisher's exact test), Q value = 1

Table S1511.  Gene #152: 'MPP6 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
MPP6 MUTATED 5 2 1 2
MPP6 WILD-TYPE 42 55 26 36
'MPP6 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.706 (Fisher's exact test), Q value = 1

Table S1512.  Gene #152: 'MPP6 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
MPP6 MUTATED 3 5 2
MPP6 WILD-TYPE 64 54 41
'MPP6 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0332 (Fisher's exact test), Q value = 1

Table S1513.  Gene #152: 'MPP6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
MPP6 MUTATED 3 9 3
MPP6 WILD-TYPE 90 70 104

Figure S97.  Get High-res Image Gene #152: 'MPP6 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

'MPP6 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.4 (Fisher's exact test), Q value = 1

Table S1514.  Gene #152: 'MPP6 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
MPP6 MUTATED 2 9 4
MPP6 WILD-TYPE 71 113 80
'MPP6 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.3 (Fisher's exact test), Q value = 1

Table S1515.  Gene #152: 'MPP6 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
MPP6 MUTATED 6 4 5
MPP6 WILD-TYPE 62 113 80
'MPP6 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.355 (Fisher's exact test), Q value = 1

Table S1516.  Gene #152: 'MPP6 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
MPP6 MUTATED 3 0 3 9
MPP6 WILD-TYPE 26 28 67 134
'MPP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.644 (Fisher's exact test), Q value = 1

Table S1517.  Gene #152: 'MPP6 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
MPP6 MUTATED 6 4 5
MPP6 WILD-TYPE 82 98 75
'MPP6 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.393 (Fisher's exact test), Q value = 1

Table S1518.  Gene #152: 'MPP6 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
MPP6 MUTATED 3 7 3 2
MPP6 WILD-TYPE 22 105 81 47
'UNC119B MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0638 (Fisher's exact test), Q value = 1

Table S1519.  Gene #153: 'UNC119B MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
UNC119B MUTATED 1 0 5
UNC119B WILD-TYPE 103 76 94
'UNC119B MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.397 (Fisher's exact test), Q value = 1

Table S1520.  Gene #153: 'UNC119B MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
UNC119B MUTATED 0 3 3
UNC119B WILD-TYPE 71 97 105
'UNC119B MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S1521.  Gene #153: 'UNC119B MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
UNC119B MUTATED 1 4 0 0
UNC119B WILD-TYPE 46 53 27 38
'UNC119B MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1522.  Gene #153: 'UNC119B MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
UNC119B MUTATED 2 2 1
UNC119B WILD-TYPE 65 57 42
'UNC119B MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.586 (Fisher's exact test), Q value = 1

Table S1523.  Gene #153: 'UNC119B MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
UNC119B MUTATED 3 2 1
UNC119B WILD-TYPE 90 77 106
'UNC119B MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.21 (Fisher's exact test), Q value = 1

Table S1524.  Gene #153: 'UNC119B MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
UNC119B MUTATED 3 3 0
UNC119B WILD-TYPE 70 119 84
'UNC119B MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.857 (Fisher's exact test), Q value = 1

Table S1525.  Gene #153: 'UNC119B MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
UNC119B MUTATED 1 3 1
UNC119B WILD-TYPE 67 114 84
'UNC119B MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.899 (Fisher's exact test), Q value = 1

Table S1526.  Gene #153: 'UNC119B MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
UNC119B MUTATED 0 0 2 3
UNC119B WILD-TYPE 29 28 68 140
'UNC119B MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.632 (Fisher's exact test), Q value = 1

Table S1527.  Gene #153: 'UNC119B MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
UNC119B MUTATED 1 3 1
UNC119B WILD-TYPE 87 99 79
'UNC119B MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.826 (Fisher's exact test), Q value = 1

Table S1528.  Gene #153: 'UNC119B MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
UNC119B MUTATED 0 3 2 0
UNC119B WILD-TYPE 25 109 82 49
'DCDC1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.116 (Fisher's exact test), Q value = 1

Table S1529.  Gene #154: 'DCDC1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
DCDC1 MUTATED 2 0 5
DCDC1 WILD-TYPE 102 76 94
'DCDC1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.155 (Fisher's exact test), Q value = 1

Table S1530.  Gene #154: 'DCDC1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
DCDC1 MUTATED 0 2 5
DCDC1 WILD-TYPE 71 98 103
'DCDC1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S1531.  Gene #154: 'DCDC1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
DCDC1 MUTATED 2 0 0 1
DCDC1 WILD-TYPE 45 57 27 37
'DCDC1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0568 (Fisher's exact test), Q value = 1

Table S1532.  Gene #154: 'DCDC1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
DCDC1 MUTATED 0 3 0
DCDC1 WILD-TYPE 67 56 43
'DCDC1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.302 (Fisher's exact test), Q value = 1

Table S1533.  Gene #154: 'DCDC1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
DCDC1 MUTATED 1 4 2
DCDC1 WILD-TYPE 92 75 105
'DCDC1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S1534.  Gene #154: 'DCDC1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
DCDC1 MUTATED 1 4 2
DCDC1 WILD-TYPE 72 118 82
'DCDC1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.15 (Fisher's exact test), Q value = 1

Table S1535.  Gene #154: 'DCDC1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
DCDC1 MUTATED 0 2 4
DCDC1 WILD-TYPE 68 115 81
'DCDC1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S1536.  Gene #154: 'DCDC1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
DCDC1 MUTATED 0 1 1 4
DCDC1 WILD-TYPE 29 27 69 139
'DCDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.591 (Fisher's exact test), Q value = 1

Table S1537.  Gene #154: 'DCDC1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
DCDC1 MUTATED 1 2 3
DCDC1 WILD-TYPE 87 100 77
'DCDC1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.764 (Fisher's exact test), Q value = 1

Table S1538.  Gene #154: 'DCDC1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
DCDC1 MUTATED 0 2 2 2
DCDC1 WILD-TYPE 25 110 82 47
'WDR65 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.473 (Fisher's exact test), Q value = 1

Table S1539.  Gene #155: 'WDR65 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
WDR65 MUTATED 7 4 10
WDR65 WILD-TYPE 97 72 89
'WDR65 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.73 (Fisher's exact test), Q value = 1

Table S1540.  Gene #155: 'WDR65 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
WDR65 MUTATED 4 9 8
WDR65 WILD-TYPE 67 91 100
'WDR65 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.788 (Fisher's exact test), Q value = 1

Table S1541.  Gene #155: 'WDR65 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
WDR65 MUTATED 3 5 1 4
WDR65 WILD-TYPE 44 52 26 34
'WDR65 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.587 (Fisher's exact test), Q value = 1

Table S1542.  Gene #155: 'WDR65 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
WDR65 MUTATED 5 6 2
WDR65 WILD-TYPE 62 53 41
'WDR65 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S1543.  Gene #155: 'WDR65 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
WDR65 MUTATED 10 5 6
WDR65 WILD-TYPE 83 74 101
'WDR65 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.726 (Fisher's exact test), Q value = 1

Table S1544.  Gene #155: 'WDR65 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
WDR65 MUTATED 7 8 6
WDR65 WILD-TYPE 66 114 78
'WDR65 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0315 (Fisher's exact test), Q value = 1

Table S1545.  Gene #155: 'WDR65 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
WDR65 MUTATED 10 7 3
WDR65 WILD-TYPE 58 110 82

Figure S98.  Get High-res Image Gene #155: 'WDR65 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'WDR65 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.426 (Fisher's exact test), Q value = 1

Table S1546.  Gene #155: 'WDR65 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
WDR65 MUTATED 2 0 7 11
WDR65 WILD-TYPE 27 28 63 132
'WDR65 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.258 (Fisher's exact test), Q value = 1

Table S1547.  Gene #155: 'WDR65 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
WDR65 MUTATED 9 8 3
WDR65 WILD-TYPE 79 94 77
'WDR65 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.806 (Fisher's exact test), Q value = 1

Table S1548.  Gene #155: 'WDR65 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
WDR65 MUTATED 2 9 7 2
WDR65 WILD-TYPE 23 103 77 47
'PTPN22 MUTATION STATUS' versus 'CN_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1549.  Gene #156: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
PTPN22 MUTATED 9 6 9
PTPN22 WILD-TYPE 95 70 90
'PTPN22 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.106 (Fisher's exact test), Q value = 1

Table S1550.  Gene #156: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
PTPN22 MUTATED 2 10 12
PTPN22 WILD-TYPE 69 90 96
'PTPN22 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.392 (Fisher's exact test), Q value = 1

Table S1551.  Gene #156: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
PTPN22 MUTATED 3 5 0 4
PTPN22 WILD-TYPE 44 52 27 34
'PTPN22 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.0148 (Fisher's exact test), Q value = 1

Table S1552.  Gene #156: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
PTPN22 MUTATED 2 9 1
PTPN22 WILD-TYPE 65 50 42

Figure S99.  Get High-res Image Gene #156: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

'PTPN22 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.383 (Fisher's exact test), Q value = 1

Table S1553.  Gene #156: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
PTPN22 MUTATED 5 8 11
PTPN22 WILD-TYPE 88 71 96
'PTPN22 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.332 (Fisher's exact test), Q value = 1

Table S1554.  Gene #156: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
PTPN22 MUTATED 4 14 6
PTPN22 WILD-TYPE 69 108 78
'PTPN22 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.337 (Fisher's exact test), Q value = 1

Table S1555.  Gene #156: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
PTPN22 MUTATED 7 11 4
PTPN22 WILD-TYPE 61 106 81
'PTPN22 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.569 (Fisher's exact test), Q value = 1

Table S1556.  Gene #156: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
PTPN22 MUTATED 4 1 6 11
PTPN22 WILD-TYPE 25 27 64 132
'PTPN22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S1557.  Gene #156: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
PTPN22 MUTATED 11 7 4
PTPN22 WILD-TYPE 77 95 76
'PTPN22 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.612 (Fisher's exact test), Q value = 1

Table S1558.  Gene #156: 'PTPN22 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
PTPN22 MUTATED 3 10 7 2
PTPN22 WILD-TYPE 22 102 77 47
'TFEC MUTATION STATUS' versus 'CN_CNMF'

P value = 0.564 (Fisher's exact test), Q value = 1

Table S1559.  Gene #157: 'TFEC MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
TFEC MUTATED 9 6 5
TFEC WILD-TYPE 95 70 94
'TFEC MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.168 (Fisher's exact test), Q value = 1

Table S1560.  Gene #157: 'TFEC MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
TFEC MUTATED 6 10 4
TFEC WILD-TYPE 65 90 104
'TFEC MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S1561.  Gene #157: 'TFEC MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
TFEC MUTATED 4 3 0 3
TFEC WILD-TYPE 43 54 27 35
'TFEC MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.315 (Fisher's exact test), Q value = 1

Table S1562.  Gene #157: 'TFEC MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
TFEC MUTATED 2 4 4
TFEC WILD-TYPE 65 55 39
'TFEC MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1563.  Gene #157: 'TFEC MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
TFEC MUTATED 7 5 8
TFEC WILD-TYPE 86 74 99
'TFEC MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.919 (Fisher's exact test), Q value = 1

Table S1564.  Gene #157: 'TFEC MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
TFEC MUTATED 6 8 6
TFEC WILD-TYPE 67 114 78
'TFEC MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.801 (Fisher's exact test), Q value = 1

Table S1565.  Gene #157: 'TFEC MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
TFEC MUTATED 4 10 6
TFEC WILD-TYPE 64 107 79
'TFEC MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.543 (Fisher's exact test), Q value = 1

Table S1566.  Gene #157: 'TFEC MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
TFEC MUTATED 3 3 3 11
TFEC WILD-TYPE 26 25 67 132
'TFEC MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.927 (Fisher's exact test), Q value = 1

Table S1567.  Gene #157: 'TFEC MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
TFEC MUTATED 7 8 5
TFEC WILD-TYPE 81 94 75
'TFEC MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.524 (Fisher's exact test), Q value = 1

Table S1568.  Gene #157: 'TFEC MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
TFEC MUTATED 3 10 5 2
TFEC WILD-TYPE 22 102 79 47
'COL1A1 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0966 (Fisher's exact test), Q value = 1

Table S1569.  Gene #158: 'COL1A1 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
COL1A1 MUTATED 13 6 19
COL1A1 WILD-TYPE 91 70 80
'COL1A1 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.0394 (Fisher's exact test), Q value = 1

Table S1570.  Gene #158: 'COL1A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
COL1A1 MUTATED 4 14 20
COL1A1 WILD-TYPE 67 86 88

Figure S100.  Get High-res Image Gene #158: 'COL1A1 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

'COL1A1 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.228 (Fisher's exact test), Q value = 1

Table S1571.  Gene #158: 'COL1A1 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
COL1A1 MUTATED 11 7 2 4
COL1A1 WILD-TYPE 36 50 25 34
'COL1A1 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.313 (Fisher's exact test), Q value = 1

Table S1572.  Gene #158: 'COL1A1 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
COL1A1 MUTATED 7 8 9
COL1A1 WILD-TYPE 60 51 34
'COL1A1 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0903 (Fisher's exact test), Q value = 1

Table S1573.  Gene #158: 'COL1A1 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
COL1A1 MUTATED 7 14 17
COL1A1 WILD-TYPE 86 65 90
'COL1A1 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.206 (Fisher's exact test), Q value = 1

Table S1574.  Gene #158: 'COL1A1 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
COL1A1 MUTATED 6 21 11
COL1A1 WILD-TYPE 67 101 73
'COL1A1 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.457 (Fisher's exact test), Q value = 1

Table S1575.  Gene #158: 'COL1A1 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
COL1A1 MUTATED 6 17 13
COL1A1 WILD-TYPE 62 100 72
'COL1A1 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.721 (Fisher's exact test), Q value = 1

Table S1576.  Gene #158: 'COL1A1 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
COL1A1 MUTATED 3 4 7 22
COL1A1 WILD-TYPE 26 24 63 121
'COL1A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.142 (Fisher's exact test), Q value = 1

Table S1577.  Gene #158: 'COL1A1 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
COL1A1 MUTATED 7 18 11
COL1A1 WILD-TYPE 81 84 69
'COL1A1 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.646 (Fisher's exact test), Q value = 1

Table S1578.  Gene #158: 'COL1A1 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
COL1A1 MUTATED 2 18 9 7
COL1A1 WILD-TYPE 23 94 75 42
'CAPSL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.225 (Fisher's exact test), Q value = 1

Table S1579.  Gene #159: 'CAPSL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
CAPSL MUTATED 6 2 9
CAPSL WILD-TYPE 98 74 90
'CAPSL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.131 (Fisher's exact test), Q value = 1

Table S1580.  Gene #159: 'CAPSL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
CAPSL MUTATED 1 7 9
CAPSL WILD-TYPE 70 93 99
'CAPSL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.793 (Fisher's exact test), Q value = 1

Table S1581.  Gene #159: 'CAPSL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
CAPSL MUTATED 3 4 2 1
CAPSL WILD-TYPE 44 53 25 37
'CAPSL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.423 (Fisher's exact test), Q value = 1

Table S1582.  Gene #159: 'CAPSL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
CAPSL MUTATED 6 2 2
CAPSL WILD-TYPE 61 57 41
'CAPSL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0898 (Fisher's exact test), Q value = 1

Table S1583.  Gene #159: 'CAPSL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
CAPSL MUTATED 2 8 7
CAPSL WILD-TYPE 91 71 100
'CAPSL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.0242 (Fisher's exact test), Q value = 1

Table S1584.  Gene #159: 'CAPSL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
CAPSL MUTATED 2 13 2
CAPSL WILD-TYPE 71 109 82

Figure S101.  Get High-res Image Gene #159: 'CAPSL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

'CAPSL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.734 (Fisher's exact test), Q value = 1

Table S1585.  Gene #159: 'CAPSL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
CAPSL MUTATED 5 8 4
CAPSL WILD-TYPE 63 109 81
'CAPSL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.613 (Fisher's exact test), Q value = 1

Table S1586.  Gene #159: 'CAPSL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
CAPSL MUTATED 2 0 5 10
CAPSL WILD-TYPE 27 28 65 133
'CAPSL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.876 (Fisher's exact test), Q value = 1

Table S1587.  Gene #159: 'CAPSL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
CAPSL MUTATED 6 7 4
CAPSL WILD-TYPE 82 95 76
'CAPSL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.546 (Fisher's exact test), Q value = 1

Table S1588.  Gene #159: 'CAPSL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
CAPSL MUTATED 1 9 6 1
CAPSL WILD-TYPE 24 103 78 48
'DDX3X MUTATION STATUS' versus 'CN_CNMF'

P value = 0.781 (Fisher's exact test), Q value = 1

Table S1589.  Gene #160: 'DDX3X MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
DDX3X MUTATED 6 5 8
DDX3X WILD-TYPE 98 71 91
'DDX3X MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1590.  Gene #160: 'DDX3X MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
DDX3X MUTATED 5 7 7
DDX3X WILD-TYPE 66 93 101
'DDX3X MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.928 (Fisher's exact test), Q value = 1

Table S1591.  Gene #160: 'DDX3X MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
DDX3X MUTATED 5 4 2 4
DDX3X WILD-TYPE 42 53 25 34
'DDX3X MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.686 (Fisher's exact test), Q value = 1

Table S1592.  Gene #160: 'DDX3X MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
DDX3X MUTATED 6 4 5
DDX3X WILD-TYPE 61 55 38
'DDX3X MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.636 (Fisher's exact test), Q value = 1

Table S1593.  Gene #160: 'DDX3X MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
DDX3X MUTATED 5 7 7
DDX3X WILD-TYPE 88 72 100
'DDX3X MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.572 (Fisher's exact test), Q value = 1

Table S1594.  Gene #160: 'DDX3X MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
DDX3X MUTATED 3 9 7
DDX3X WILD-TYPE 70 113 77
'DDX3X MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.935 (Fisher's exact test), Q value = 1

Table S1595.  Gene #160: 'DDX3X MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
DDX3X MUTATED 4 9 6
DDX3X WILD-TYPE 64 108 79
'DDX3X MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.409 (Fisher's exact test), Q value = 1

Table S1596.  Gene #160: 'DDX3X MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
DDX3X MUTATED 4 2 3 10
DDX3X WILD-TYPE 25 26 67 133
'DDX3X MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.521 (Fisher's exact test), Q value = 1

Table S1597.  Gene #160: 'DDX3X MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
DDX3X MUTATED 4 8 7
DDX3X WILD-TYPE 84 94 73
'DDX3X MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.705 (Fisher's exact test), Q value = 1

Table S1598.  Gene #160: 'DDX3X MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
DDX3X MUTATED 2 10 4 3
DDX3X WILD-TYPE 23 102 80 46
'ACMSD MUTATION STATUS' versus 'CN_CNMF'

P value = 0.823 (Fisher's exact test), Q value = 1

Table S1599.  Gene #161: 'ACMSD MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
ACMSD MUTATED 6 3 4
ACMSD WILD-TYPE 98 73 95
'ACMSD MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.77 (Fisher's exact test), Q value = 1

Table S1600.  Gene #161: 'ACMSD MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
ACMSD MUTATED 3 6 4
ACMSD WILD-TYPE 68 94 104
'ACMSD MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.692 (Fisher's exact test), Q value = 1

Table S1601.  Gene #161: 'ACMSD MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
ACMSD MUTATED 3 3 0 2
ACMSD WILD-TYPE 44 54 27 36
'ACMSD MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.814 (Fisher's exact test), Q value = 1

Table S1602.  Gene #161: 'ACMSD MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
ACMSD MUTATED 4 3 1
ACMSD WILD-TYPE 63 56 42
'ACMSD MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.489 (Fisher's exact test), Q value = 1

Table S1603.  Gene #161: 'ACMSD MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
ACMSD MUTATED 6 2 5
ACMSD WILD-TYPE 87 77 102
'ACMSD MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.627 (Fisher's exact test), Q value = 1

Table S1604.  Gene #161: 'ACMSD MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
ACMSD MUTATED 5 5 3
ACMSD WILD-TYPE 68 117 81
'ACMSD MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.718 (Fisher's exact test), Q value = 1

Table S1605.  Gene #161: 'ACMSD MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
ACMSD MUTATED 2 6 5
ACMSD WILD-TYPE 66 111 80
'ACMSD MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.601 (Fisher's exact test), Q value = 1

Table S1606.  Gene #161: 'ACMSD MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
ACMSD MUTATED 1 0 5 7
ACMSD WILD-TYPE 28 28 65 136
'ACMSD MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.725 (Fisher's exact test), Q value = 1

Table S1607.  Gene #161: 'ACMSD MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
ACMSD MUTATED 3 6 4
ACMSD WILD-TYPE 85 96 76
'ACMSD MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S1608.  Gene #161: 'ACMSD MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
ACMSD MUTATED 1 6 5 1
ACMSD WILD-TYPE 24 106 79 48
'TIMD4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.833 (Fisher's exact test), Q value = 1

Table S1609.  Gene #162: 'TIMD4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
TIMD4 MUTATED 5 5 6
TIMD4 WILD-TYPE 99 71 93
'TIMD4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.512 (Fisher's exact test), Q value = 1

Table S1610.  Gene #162: 'TIMD4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
TIMD4 MUTATED 2 7 7
TIMD4 WILD-TYPE 69 93 101
'TIMD4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.887 (Fisher's exact test), Q value = 1

Table S1611.  Gene #162: 'TIMD4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
TIMD4 MUTATED 4 3 1 2
TIMD4 WILD-TYPE 43 54 26 36
'TIMD4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.844 (Fisher's exact test), Q value = 1

Table S1612.  Gene #162: 'TIMD4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
TIMD4 MUTATED 5 3 2
TIMD4 WILD-TYPE 62 56 41
'TIMD4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.406 (Fisher's exact test), Q value = 1

Table S1613.  Gene #162: 'TIMD4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
TIMD4 MUTATED 4 7 5
TIMD4 WILD-TYPE 89 72 102
'TIMD4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.34 (Fisher's exact test), Q value = 1

Table S1614.  Gene #162: 'TIMD4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
TIMD4 MUTATED 3 10 3
TIMD4 WILD-TYPE 70 112 81
'TIMD4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.715 (Fisher's exact test), Q value = 1

Table S1615.  Gene #162: 'TIMD4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
TIMD4 MUTATED 4 5 6
TIMD4 WILD-TYPE 64 112 79
'TIMD4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.443 (Fisher's exact test), Q value = 1

Table S1616.  Gene #162: 'TIMD4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
TIMD4 MUTATED 3 1 5 6
TIMD4 WILD-TYPE 26 27 65 137
'TIMD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.576 (Fisher's exact test), Q value = 1

Table S1617.  Gene #162: 'TIMD4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
TIMD4 MUTATED 5 4 6
TIMD4 WILD-TYPE 83 98 74
'TIMD4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.74 (Fisher's exact test), Q value = 1

Table S1618.  Gene #162: 'TIMD4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
TIMD4 MUTATED 2 5 6 2
TIMD4 WILD-TYPE 23 107 78 47
'NOTCH4 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.379 (Fisher's exact test), Q value = 1

Table S1619.  Gene #163: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
NOTCH4 MUTATED 20 10 21
NOTCH4 WILD-TYPE 84 66 78
'NOTCH4 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.888 (Fisher's exact test), Q value = 1

Table S1620.  Gene #163: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
NOTCH4 MUTATED 13 17 21
NOTCH4 WILD-TYPE 58 83 87
'NOTCH4 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.454 (Fisher's exact test), Q value = 1

Table S1621.  Gene #163: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
NOTCH4 MUTATED 7 16 6 8
NOTCH4 WILD-TYPE 40 41 21 30
'NOTCH4 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.203 (Fisher's exact test), Q value = 1

Table S1622.  Gene #163: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
NOTCH4 MUTATED 14 17 6
NOTCH4 WILD-TYPE 53 42 37
'NOTCH4 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.214 (Fisher's exact test), Q value = 1

Table S1623.  Gene #163: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
NOTCH4 MUTATED 12 18 21
NOTCH4 WILD-TYPE 81 61 86
'NOTCH4 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.287 (Fisher's exact test), Q value = 1

Table S1624.  Gene #163: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
NOTCH4 MUTATED 9 26 16
NOTCH4 WILD-TYPE 64 96 68
'NOTCH4 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.0402 (Fisher's exact test), Q value = 1

Table S1625.  Gene #163: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
NOTCH4 MUTATED 19 21 10
NOTCH4 WILD-TYPE 49 96 75

Figure S102.  Get High-res Image Gene #163: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

'NOTCH4 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.135 (Fisher's exact test), Q value = 1

Table S1626.  Gene #163: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
NOTCH4 MUTATED 5 1 13 31
NOTCH4 WILD-TYPE 24 27 57 112
'NOTCH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.121 (Fisher's exact test), Q value = 1

Table S1627.  Gene #163: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
NOTCH4 MUTATED 18 23 9
NOTCH4 WILD-TYPE 70 79 71
'NOTCH4 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.00216 (Fisher's exact test), Q value = 1

Table S1628.  Gene #163: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
NOTCH4 MUTATED 4 31 13 2
NOTCH4 WILD-TYPE 21 81 71 47

Figure S103.  Get High-res Image Gene #163: 'NOTCH4 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

'C12ORF36 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S1629.  Gene #164: 'C12ORF36 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
C12ORF36 MUTATED 4 4 2
C12ORF36 WILD-TYPE 100 72 97
'C12ORF36 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.295 (Fisher's exact test), Q value = 1

Table S1630.  Gene #164: 'C12ORF36 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
C12ORF36 MUTATED 1 6 3
C12ORF36 WILD-TYPE 70 94 105
'C12ORF36 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.623 (Fisher's exact test), Q value = 1

Table S1631.  Gene #164: 'C12ORF36 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
C12ORF36 MUTATED 3 1 1 1
C12ORF36 WILD-TYPE 44 56 26 37
'C12ORF36 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.199 (Fisher's exact test), Q value = 1

Table S1632.  Gene #164: 'C12ORF36 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
C12ORF36 MUTATED 2 4 0
C12ORF36 WILD-TYPE 65 55 43
'C12ORF36 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.558 (Fisher's exact test), Q value = 1

Table S1633.  Gene #164: 'C12ORF36 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
C12ORF36 MUTATED 5 2 3
C12ORF36 WILD-TYPE 88 77 104
'C12ORF36 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.164 (Fisher's exact test), Q value = 1

Table S1634.  Gene #164: 'C12ORF36 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
C12ORF36 MUTATED 5 2 3
C12ORF36 WILD-TYPE 68 120 81
'C12ORF36 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.223 (Fisher's exact test), Q value = 1

Table S1635.  Gene #164: 'C12ORF36 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
C12ORF36 MUTATED 5 3 2
C12ORF36 WILD-TYPE 63 114 83
'C12ORF36 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S1636.  Gene #164: 'C12ORF36 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
C12ORF36 MUTATED 1 0 5 4
C12ORF36 WILD-TYPE 28 28 65 139
'C12ORF36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.0994 (Fisher's exact test), Q value = 1

Table S1637.  Gene #164: 'C12ORF36 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
C12ORF36 MUTATED 6 1 3
C12ORF36 WILD-TYPE 82 101 77
'C12ORF36 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.811 (Fisher's exact test), Q value = 1

Table S1638.  Gene #164: 'C12ORF36 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
C12ORF36 MUTATED 1 3 4 2
C12ORF36 WILD-TYPE 24 109 80 47
'SDPR MUTATION STATUS' versus 'CN_CNMF'

P value = 0.462 (Fisher's exact test), Q value = 1

Table S1639.  Gene #165: 'SDPR MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
SDPR MUTATED 9 3 7
SDPR WILD-TYPE 95 73 92
'SDPR MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.14 (Fisher's exact test), Q value = 1

Table S1640.  Gene #165: 'SDPR MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
SDPR MUTATED 3 11 5
SDPR WILD-TYPE 68 89 103
'SDPR MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.952 (Fisher's exact test), Q value = 1

Table S1641.  Gene #165: 'SDPR MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
SDPR MUTATED 3 5 2 2
SDPR WILD-TYPE 44 52 25 36
'SDPR MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.192 (Fisher's exact test), Q value = 1

Table S1642.  Gene #165: 'SDPR MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
SDPR MUTATED 4 7 1
SDPR WILD-TYPE 63 52 42
'SDPR MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.333 (Fisher's exact test), Q value = 1

Table S1643.  Gene #165: 'SDPR MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
SDPR MUTATED 6 3 10
SDPR WILD-TYPE 87 76 97
'SDPR MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.66 (Fisher's exact test), Q value = 1

Table S1644.  Gene #165: 'SDPR MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
SDPR MUTATED 6 9 4
SDPR WILD-TYPE 67 113 80
'SDPR MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.728 (Fisher's exact test), Q value = 1

Table S1645.  Gene #165: 'SDPR MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
SDPR MUTATED 6 7 6
SDPR WILD-TYPE 62 110 79
'SDPR MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.526 (Fisher's exact test), Q value = 1

Table S1646.  Gene #165: 'SDPR MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
SDPR MUTATED 2 0 6 11
SDPR WILD-TYPE 27 28 64 132
'SDPR MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.672 (Fisher's exact test), Q value = 1

Table S1647.  Gene #165: 'SDPR MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
SDPR MUTATED 5 9 5
SDPR WILD-TYPE 83 93 75
'SDPR MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.447 (Fisher's exact test), Q value = 1

Table S1648.  Gene #165: 'SDPR MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
SDPR MUTATED 2 10 6 1
SDPR WILD-TYPE 23 102 78 48
'GPC5 MUTATION STATUS' versus 'CN_CNMF'

P value = 0.561 (Fisher's exact test), Q value = 1

Table S1649.  Gene #166: 'GPC5 MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
GPC5 MUTATED 12 6 13
GPC5 WILD-TYPE 92 70 86
'GPC5 MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S1650.  Gene #166: 'GPC5 MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
GPC5 MUTATED 6 11 14
GPC5 WILD-TYPE 65 89 94
'GPC5 MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.71 (Fisher's exact test), Q value = 1

Table S1651.  Gene #166: 'GPC5 MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
GPC5 MUTATED 5 5 2 6
GPC5 WILD-TYPE 42 52 25 32
'GPC5 MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.642 (Fisher's exact test), Q value = 1

Table S1652.  Gene #166: 'GPC5 MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
GPC5 MUTATED 9 5 4
GPC5 WILD-TYPE 58 54 39
'GPC5 MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.0717 (Fisher's exact test), Q value = 1

Table S1653.  Gene #166: 'GPC5 MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
GPC5 MUTATED 5 12 14
GPC5 WILD-TYPE 88 67 93
'GPC5 MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.318 (Fisher's exact test), Q value = 1

Table S1654.  Gene #166: 'GPC5 MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
GPC5 MUTATED 5 17 9
GPC5 WILD-TYPE 68 105 75
'GPC5 MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.667 (Fisher's exact test), Q value = 1

Table S1655.  Gene #166: 'GPC5 MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
GPC5 MUTATED 9 11 10
GPC5 WILD-TYPE 59 106 75
'GPC5 MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.959 (Fisher's exact test), Q value = 1

Table S1656.  Gene #166: 'GPC5 MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
GPC5 MUTATED 3 2 8 17
GPC5 WILD-TYPE 26 26 62 126
'GPC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.818 (Fisher's exact test), Q value = 1

Table S1657.  Gene #166: 'GPC5 MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
GPC5 MUTATED 10 10 10
GPC5 WILD-TYPE 78 92 70
'GPC5 MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.852 (Fisher's exact test), Q value = 1

Table S1658.  Gene #166: 'GPC5 MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
GPC5 MUTATED 2 13 11 4
GPC5 WILD-TYPE 23 99 73 45
'CCDC28A MUTATION STATUS' versus 'CN_CNMF'

P value = 0.147 (Fisher's exact test), Q value = 1

Table S1659.  Gene #167: 'CCDC28A MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
CCDC28A MUTATED 1 3 6
CCDC28A WILD-TYPE 103 73 93
'CCDC28A MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.56 (Fisher's exact test), Q value = 1

Table S1660.  Gene #167: 'CCDC28A MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
CCDC28A MUTATED 1 4 5
CCDC28A WILD-TYPE 70 96 103
'CCDC28A MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.905 (Fisher's exact test), Q value = 1

Table S1661.  Gene #167: 'CCDC28A MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
CCDC28A MUTATED 3 2 1 1
CCDC28A WILD-TYPE 44 55 26 37
'CCDC28A MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.339 (Fisher's exact test), Q value = 1

Table S1662.  Gene #167: 'CCDC28A MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
CCDC28A MUTATED 1 3 3
CCDC28A WILD-TYPE 66 56 40
'CCDC28A MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.278 (Fisher's exact test), Q value = 1

Table S1663.  Gene #167: 'CCDC28A MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
CCDC28A MUTATED 3 5 2
CCDC28A WILD-TYPE 90 74 105
'CCDC28A MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.922 (Fisher's exact test), Q value = 1

Table S1664.  Gene #167: 'CCDC28A MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
CCDC28A MUTATED 2 5 3
CCDC28A WILD-TYPE 71 117 81
'CCDC28A MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.422 (Fisher's exact test), Q value = 1

Table S1665.  Gene #167: 'CCDC28A MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
CCDC28A MUTATED 2 3 5
CCDC28A WILD-TYPE 66 114 80
'CCDC28A MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.48 (Fisher's exact test), Q value = 1

Table S1666.  Gene #167: 'CCDC28A MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
CCDC28A MUTATED 0 2 3 5
CCDC28A WILD-TYPE 29 26 67 138
'CCDC28A MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1667.  Gene #167: 'CCDC28A MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
CCDC28A MUTATED 3 4 3
CCDC28A WILD-TYPE 85 98 77
'CCDC28A MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.784 (Fisher's exact test), Q value = 1

Table S1668.  Gene #167: 'CCDC28A MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
CCDC28A MUTATED 0 5 4 1
CCDC28A WILD-TYPE 25 107 80 48
'MC2R MUTATION STATUS' versus 'CN_CNMF'

P value = 0.104 (Fisher's exact test), Q value = 1

Table S1669.  Gene #168: 'MC2R MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
MC2R MUTATED 4 1 0
MC2R WILD-TYPE 100 75 99
'MC2R MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.54 (Fisher's exact test), Q value = 1

Table S1670.  Gene #168: 'MC2R MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
MC2R MUTATED 1 3 1
MC2R WILD-TYPE 70 97 107
'MC2R MUTATION STATUS' versus 'RPPA_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1671.  Gene #168: 'MC2R MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
MC2R MUTATED 1 2 1 1
MC2R WILD-TYPE 46 55 26 37
'MC2R MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.259 (Fisher's exact test), Q value = 1

Table S1672.  Gene #168: 'MC2R MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
MC2R MUTATED 4 1 0
MC2R WILD-TYPE 63 58 43
'MC2R MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 1 (Fisher's exact test), Q value = 1

Table S1673.  Gene #168: 'MC2R MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
MC2R MUTATED 2 1 2
MC2R WILD-TYPE 91 78 105
'MC2R MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.609 (Fisher's exact test), Q value = 1

Table S1674.  Gene #168: 'MC2R MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
MC2R MUTATED 2 1 2
MC2R WILD-TYPE 71 121 82
'MC2R MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.323 (Fisher's exact test), Q value = 1

Table S1675.  Gene #168: 'MC2R MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
MC2R MUTATED 0 4 1
MC2R WILD-TYPE 68 113 84
'MC2R MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 1 (Fisher's exact test), Q value = 1

Table S1676.  Gene #168: 'MC2R MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
MC2R MUTATED 0 0 1 4
MC2R WILD-TYPE 29 28 69 139
'MC2R MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.132 (Fisher's exact test), Q value = 1

Table S1677.  Gene #168: 'MC2R MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
MC2R MUTATED 0 4 1
MC2R WILD-TYPE 88 98 79
'MC2R MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.505 (Fisher's exact test), Q value = 1

Table S1678.  Gene #168: 'MC2R MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
MC2R MUTATED 0 4 1 0
MC2R WILD-TYPE 25 108 83 49
'KL MUTATION STATUS' versus 'CN_CNMF'

P value = 0.0379 (Fisher's exact test), Q value = 1

Table S1679.  Gene #169: 'KL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 104 76 99
KL MUTATED 11 2 13
KL WILD-TYPE 93 74 86

Figure S104.  Get High-res Image Gene #169: 'KL MUTATION STATUS' versus Molecular Subtype #1: 'CN_CNMF'

'KL MUTATION STATUS' versus 'METHLYATION_CNMF'

P value = 0.28 (Fisher's exact test), Q value = 1

Table S1680.  Gene #169: 'KL MUTATION STATUS' versus Molecular Subtype #2: 'METHLYATION_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 71 100 108
KL MUTATED 5 7 14
KL WILD-TYPE 66 93 94
'KL MUTATION STATUS' versus 'RPPA_CNMF'

P value = 0.0881 (Fisher's exact test), Q value = 1

Table S1681.  Gene #169: 'KL MUTATION STATUS' versus Molecular Subtype #3: 'RPPA_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 47 57 27 38
KL MUTATED 9 3 1 3
KL WILD-TYPE 38 54 26 35
'KL MUTATION STATUS' versus 'RPPA_CHIERARCHICAL'

P value = 0.407 (Fisher's exact test), Q value = 1

Table S1682.  Gene #169: 'KL MUTATION STATUS' versus Molecular Subtype #4: 'RPPA_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 67 59 43
KL MUTATED 4 7 5
KL WILD-TYPE 63 52 38
'KL MUTATION STATUS' versus 'MRNASEQ_CNMF'

P value = 0.469 (Fisher's exact test), Q value = 1

Table S1683.  Gene #169: 'KL MUTATION STATUS' versus Molecular Subtype #5: 'MRNASEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 93 79 107
KL MUTATED 6 9 11
KL WILD-TYPE 87 70 96
'KL MUTATION STATUS' versus 'MRNASEQ_CHIERARCHICAL'

P value = 0.861 (Fisher's exact test), Q value = 1

Table S1684.  Gene #169: 'KL MUTATION STATUS' versus Molecular Subtype #6: 'MRNASEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 73 122 84
KL MUTATED 6 11 9
KL WILD-TYPE 67 111 75
'KL MUTATION STATUS' versus 'MIRSEQ_CNMF'

P value = 0.334 (Fisher's exact test), Q value = 1

Table S1685.  Gene #169: 'KL MUTATION STATUS' versus Molecular Subtype #7: 'MIRSEQ_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 68 117 85
KL MUTATED 6 8 11
KL WILD-TYPE 62 109 74
'KL MUTATION STATUS' versus 'MIRSEQ_CHIERARCHICAL'

P value = 0.304 (Fisher's exact test), Q value = 1

Table S1686.  Gene #169: 'KL MUTATION STATUS' versus Molecular Subtype #8: 'MIRSEQ_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 29 28 70 143
KL MUTATED 1 1 10 13
KL WILD-TYPE 28 27 60 130
'KL MUTATION STATUS' versus 'MIRSEQ_MATURE_CNMF'

P value = 0.434 (Fisher's exact test), Q value = 1

Table S1687.  Gene #169: 'KL MUTATION STATUS' versus Molecular Subtype #9: 'MIRSEQ_MATURE_CNMF'

nPatients CLUS_1 CLUS_2 CLUS_3
ALL 88 102 80
KL MUTATED 6 9 10
KL WILD-TYPE 82 93 70
'KL MUTATION STATUS' versus 'MIRSEQ_MATURE_CHIERARCHICAL'

P value = 0.128 (Fisher's exact test), Q value = 1

Table S1688.  Gene #169: 'KL MUTATION STATUS' versus Molecular Subtype #10: 'MIRSEQ_MATURE_CHIERARCHICAL'

nPatients CLUS_1 CLUS_2 CLUS_3 CLUS_4
ALL 25 112 84 49
KL MUTATED 1 12 11 1
KL WILD-TYPE 24 100 73 48
Methods & Data
Input

  • Mutation data file = transformed.cor.cli.txt

  • Molecular subtypes file = SKCM-TM.transferedmergedcluster.txt

  • Number of patients = 279

  • Number of significantly mutated genes = 169

  • Number of Molecular subtypes = 10

  • Exclude genes that fewer than K tumors have mutations, K = 3

Fisher's exact test

For binary or multi-class clinical features (nominal or ordinal), two-tailed Fisher's exact tests (Fisher 1922) were used to estimate the P values using the 'fisher.test' function in R

Q value calculation

For multiple hypothesis correction, Q value is the False Discovery Rate (FDR) analogue of the P value (Benjamini and Hochberg 1995), defined as the minimum FDR at which the test may be called significant. We used the 'Benjamini and Hochberg' method of 'p.adjust' function in R to convert P values into Q values.

Download Results

In addition to the links below, the full results of the analysis summarized in this report can also be downloaded programmatically using firehose_get, or interactively from either the Broad GDAC website or TCGA Data Coordination Center Portal.

References
[1] Fisher, R.A., On the interpretation of chi-square from contingency tables, and the calculation of P, Journal of the Royal Statistical Society 85(1):87-94 (1922)
[2] Benjamini and Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, Journal of the Royal Statistical Society Series B 59:289-300 (1995)
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