Clinical Features MRNA_CNMF MRNA_CHIERARCHICAL CN_CNMF METHLYATION_CNMF RPPA_CNMF RPPA_CHIERARCHICAL MRNASEQ_CNMF MRNASEQ_CHIERARCHICAL MIRSEQ_CNMF MIRSEQ_CHIERARCHICAL MIRSEQ_MATURE_CNMF MIRSEQ_MATURE_CHIERARCHICAL nCNV (%) nWild-Type Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Chi-square test_P Chi-square test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q Fisher's exact test_P Fisher's exact test_Q 1p 67 (13%) 447 0.20638 1 0.13619 1 3.9801e-18 1.58e-15 1.2134e-08 3.32e-06 0.080723 1 0.055931 1 1.3563e-10 4.19e-08 2.2263e-08 5.9e-06 3.0935e-08 8.04e-06 8.3908e-10 2.51e-07 4.812e-05 0.00977 4.1535e-06 0.000947 1q 188 (37%) 326 0.093417 1 0.13322 1 0.0001233 0.0237 0.044906 1 0.15778 1 0.04584 1 0.019088 1 0.1057 1 0.029842 1 0.13624 1 0.65619 1 0.017218 1 2p 98 (19%) 416 0.85548 1 0.68288 1 1.6222e-34 7.38e-32 7.9797e-09 2.21e-06 0.056687 1 0.53502 1 4.7819e-10 1.44e-07 1.9878e-09 5.8e-07 3.2548e-07 8.04e-05 1.7621e-07 4.46e-05 0.00027068 0.0498 3.6764e-05 0.00768 2q 87 (17%) 427 0.28395 1 0.66714 1 4.0429e-32 1.83e-29 3.3437e-07 8.19e-05 0.046356 1 1 1 2.3875e-09 6.9e-07 4.2881e-09 1.22e-06 9.6e-08 2.46e-05 2.3091e-08 6.1e-06 0.00032096 0.0581 2.3944e-05 0.00505 3p 91 (18%) 423 0.036973 1 0.15766 1 1.2334e-31 5.56e-29 1.0213e-09 3.03e-07 0.058114 1 0.15707 1 7.044e-17 2.7e-14 3.0716e-14 1.1e-11 8.9995e-09 2.48e-06 1.3359e-08 3.63e-06 0.00011538 0.0224 2.5702e-07 6.4e-05 3q 105 (20%) 409 0.019232 1 0.042551 1 2.1713e-35 9.9e-33 1.2015e-14 4.35e-12 0.022046 1 0.013058 1 3.2795e-21 1.38e-18 3.5484e-19 1.43e-16 1.1567e-10 3.59e-08 1.3559e-11 4.31e-09 1.2267e-05 0.0027 3.0794e-10 9.36e-08 4p 110 (21%) 404 0.008879 1 0.00059461 0.102 9.9783e-44 4.65e-41 2.7071e-16 1.01e-13 0.0005054 0.0889 0.029669 1 3.7031e-26 1.62e-23 4.7683e-23 2.05e-20 8.6456e-21 3.6e-18 6.1755e-17 2.38e-14 4.5019e-07 0.000108 8.7369e-10 2.6e-07 4q 105 (20%) 409 0.17518 1 0.062329 1 1.9272e-42 8.94e-40 1.1053e-16 4.21e-14 0.012773 1 0.16823 1 1.6966e-26 7.48e-24 3.8333e-21 1.61e-18 2.8218e-16 1.05e-13 1.591e-16 6.05e-14 6.3423e-07 0.000151 2.1289e-09 6.17e-07 5p 103 (20%) 411 0.10137 1 0.0044673 0.657 5.1447e-39 2.37e-36 1.6206e-17 6.34e-15 0.0094198 1 0.13324 1 5.6064e-21 2.34e-18 3.7673e-20 1.56e-17 2.3496e-16 8.81e-14 5.1612e-14 1.82e-11 1.3403e-08 3.63e-06 3.4216e-12 1.13e-09 5q 91 (18%) 423 0.012904 1 0.0019294 0.307 9.4512e-36 4.32e-33 7.8443e-16 2.89e-13 0.0062348 0.879 0.065286 1 1.8158e-18 7.25e-16 6.0466e-18 2.39e-15 1.9145e-13 6.62e-11 2.725e-13 9.37e-11 3.4393e-07 8.39e-05 2.3951e-10 7.33e-08 6p 90 (18%) 424 0.0872 1 0.042551 1 1.7145e-31 7.72e-29 6.3482e-09 1.76e-06 0.034132 1 0.048677 1 4.2689e-13 1.45e-10 5.6163e-11 1.77e-08 1.2141e-08 3.32e-06 5.48e-09 1.54e-06 0.0034518 0.525 0.00067922 0.113 6q 83 (16%) 431 0.0872 1 0.042551 1 2.0422e-27 9.05e-25 4.8037e-07 0.000115 0.019355 1 0.048677 1 2.2666e-10 6.96e-08 5.005e-09 1.41e-06 1.9404e-06 0.000452 2.0783e-07 5.24e-05 0.054032 1 0.0050856 0.743 7p 105 (20%) 409 0.11471 1 0.12833 1 9.078e-27 4.01e-24 0.00012203 0.0236 0.22989 1 0.66522 1 2.4738e-11 7.84e-09 1.1178e-07 2.85e-05 3.4581e-06 0.000792 1.8076e-05 0.00389 0.022379 1 0.039169 1 7q 101 (20%) 413 0.68227 1 0.88876 1 1.848e-26 8.13e-24 1.4798e-05 0.00324 0.77793 1 0.27402 1 9.7474e-12 3.13e-09 3.2931e-07 8.1e-05 3.4727e-07 8.44e-05 2.1988e-06 0.00051 0.0052393 0.76 0.0031209 0.477 8p 188 (37%) 326 0.0029503 0.457 0.0042068 0.631 1.3106e-36 6.02e-34 2.916e-08 7.61e-06 0.0003589 0.0642 0.6067 1 3.9036e-15 1.43e-12 4.1209e-13 1.41e-10 2.7286e-12 9.03e-10 3.6571e-09 1.05e-06 9.2314e-05 0.0183 1.8407e-05 0.00394 8q 174 (34%) 340 0.0029503 0.457 0.0042068 0.631 6.6814e-31 3e-28 0.00020288 0.0379 0.00019681 0.037 0.86379 1 6.1612e-09 1.72e-06 1.0617e-08 2.92e-06 2.1765e-08 5.79e-06 1.0236e-05 0.00226 0.00060453 0.103 0.0018952 0.303 9p 120 (23%) 394 0.00060132 0.103 3.9715e-05 0.00826 4.4459e-48 2.1e-45 1.5707e-13 5.47e-11 0.00061308 0.104 0.039529 1 7.1013e-21 2.96e-18 1.3616e-18 5.45e-16 5.1493e-20 2.12e-17 5.8468e-12 1.91e-09 0.00039118 0.0696 5.3874e-06 0.00122 9q 126 (25%) 388 2.3489e-05 0.00498 1.1294e-06 0.000265 3.0765e-51 1.46e-48 5.9321e-12 1.93e-09 0.00033736 0.0607 0.065608 1 5.3489e-22 2.27e-19 6.8848e-20 2.82e-17 5.1837e-25 2.26e-22 1.5435e-12 5.14e-10 0.00017787 0.0338 6.3369e-06 0.00143 10p 152 (30%) 362 0.033729 1 0.092875 1 4.1529e-14 1.47e-11 0.029345 1 0.11913 1 0.40608 1 0.00031374 0.0571 0.00028858 0.0528 0.0017425 0.281 0.19987 1 0.86356 1 0.24291 1 10q 142 (28%) 372 0.010073 1 0.036535 1 1.5163e-12 5.06e-10 0.049626 1 0.14218 1 0.24703 1 0.0010015 0.164 0.0059103 0.839 0.0091029 1 0.49685 1 0.44483 1 0.095842 1 11p 93 (18%) 421 0.0020193 0.317 0.0075524 1 5.9872e-36 2.74e-33 6.0916e-12 1.97e-09 0.31268 1 0.63769 1 3.4382e-17 1.33e-14 1.9293e-16 7.27e-14 1.5061e-14 5.41e-12 3.4424e-09 9.88e-07 9.407e-05 0.0185 2.8393e-08 7.44e-06 11q 87 (17%) 427 NA NA NA NA 2.525e-32 1.15e-29 8.0636e-11 2.52e-08 0.4987 1 0.8017 1 1.2808e-14 4.61e-12 9.1095e-14 3.2e-11 1.8637e-13 6.47e-11 2.2001e-07 5.52e-05 0.00012658 0.0242 3.476e-10 1.05e-07 12p 107 (21%) 407 0.15709 1 0.17536 1 1.2613e-27 5.6e-25 5.352e-10 1.61e-07 0.092689 1 0.22491 1 2.4608e-15 9.06e-13 1.2921e-11 4.12e-09 1.4924e-09 4.42e-07 5.4155e-08 1.39e-05 2.4688e-07 6.17e-05 2.5589e-08 6.73e-06 12q 85 (17%) 429 0.25494 1 0.43447 1 7.7141e-18 3.05e-15 4.219e-07 0.000102 0.22184 1 0.13324 1 2.4822e-10 7.57e-08 2.0434e-08 5.48e-06 6.5715e-05 0.0133 8.9305e-06 0.002 2.6457e-05 0.00556 4.5739e-06 0.00104 13q 114 (22%) 400 0.15397 1 0.027594 1 1.6002e-39 7.39e-37 1.0729e-10 3.34e-08 0.0052403 0.76 0.090054 1 2.1159e-16 7.96e-14 6.0643e-17 2.34e-14 4.804e-14 1.7e-11 6.0489e-11 1.89e-08 0.0042558 0.631 8.1828e-05 0.0164 14q 95 (18%) 419 0.019232 1 0.042551 1 3.198e-32 1.45e-29 2.8024e-13 9.61e-11 0.018513 1 0.013058 1 1.2488e-25 5.46e-23 2.8812e-19 1.17e-16 2.5351e-13 8.75e-11 1.0333e-13 3.62e-11 1.4797e-05 0.00324 4.7931e-08 1.24e-05 15q 112 (22%) 402 0.0005666 0.0992 4.1747e-05 0.00864 1.4683e-44 6.87e-42 4.4986e-13 1.52e-10 0.0010399 0.17 0.15707 1 8.4112e-23 3.61e-20 7.7451e-22 3.28e-19 9.6765e-20 3.96e-17 3.9745e-15 1.45e-12 3.0544e-06 0.000703 3.7859e-08 9.81e-06 16p 116 (23%) 398 0.0005666 0.0992 4.1747e-05 0.00864 5.5853e-45 2.63e-42 2.4372e-12 8.09e-10 0.1155 1 0.41073 1 1.1747e-22 5.03e-20 9.6581e-18 3.81e-15 2.2973e-17 8.94e-15 5.6298e-11 1.77e-08 8.3466e-05 0.0167 2.6726e-07 6.63e-05 16q 144 (28%) 370 0.00077129 0.128 9.7998e-05 0.0192 5.2974e-51 2.52e-48 3.4954e-14 1.24e-11 0.20249 1 0.69807 1 2.9558e-26 1.3e-23 5.1201e-20 2.11e-17 3.1323e-19 1.27e-16 8.5069e-12 2.74e-09 2.7952e-06 0.000646 3.8241e-09 1.09e-06 17p 132 (26%) 382 0.00077129 0.128 9.7998e-05 0.0192 1.3059e-62 6.24e-60 1.0221e-16 3.9e-14 0.0056777 0.812 0.53502 1 1.0145e-29 4.52e-27 1.7244e-22 7.35e-20 4.5528e-23 1.96e-20 6.1479e-12 1.99e-09 0.00026314 0.0487 7.4973e-07 0.000178 17q 114 (22%) 400 0.0005666 0.0992 4.1747e-05 0.00864 1.9037e-49 9e-47 8.3449e-13 2.8e-10 0.11461 1 0.37819 1 4.1854e-22 1.78e-19 4.5221e-16 1.67e-13 4.1469e-16 1.54e-13 1.8643e-08 5.03e-06 0.00063128 0.106 2.1867e-05 0.00466 18p 117 (23%) 397 0.18818 1 0.095096 1 1.4971e-45 7.05e-43 3.971e-19 1.59e-16 0.029142 1 0.13324 1 4.0915e-23 1.77e-20 3.8054e-21 1.6e-18 2.1553e-20 8.94e-18 7.9011e-17 3.03e-14 2.5049e-09 7.21e-07 2.9399e-12 9.7e-10 18q 105 (20%) 409 0.051477 1 0.027594 1 3.958e-38 1.82e-35 8.9071e-15 3.23e-12 0.14504 1 0.18627 1 5.3545e-18 2.13e-15 1.8597e-19 7.57e-17 3.6665e-17 1.42e-14 8.3229e-15 3.04e-12 1.7383e-07 4.42e-05 1.9341e-09 5.67e-07 19p 107 (21%) 407 0.0020193 0.317 0.00021801 0.0406 6.4892e-44 3.03e-41 1.7849e-16 6.75e-14 0.062102 1 0.10245 1 5.1246e-24 2.23e-21 1.6323e-22 6.97e-20 4.0071e-20 1.65e-17 4.3934e-12 1.44e-09 1.3558e-06 0.000317 5.6611e-09 1.59e-06 19q 107 (21%) 407 0.036973 1 0.0075524 1 3.6868e-43 1.71e-40 5.257e-13 1.77e-10 0.016952 1 0.34594 1 3.5239e-23 1.53e-20 5.7405e-24 2.49e-21 3.2218e-19 1.3e-16 6.2843e-13 2.11e-10 9.6595e-06 0.00215 1.5227e-09 4.49e-07 20p 124 (24%) 390 0.051454 1 0.0075524 1 6.3594e-45 2.98e-42 4.949e-12 1.62e-09 0.056295 1 0.27402 1 2.1443e-17 8.36e-15 1.6808e-16 6.37e-14 6.1077e-14 2.15e-11 1.7274e-10 5.32e-08 1.5886e-05 0.00345 1.9601e-08 5.27e-06 20q 133 (26%) 381 0.012904 1 0.0019294 0.307 1.7304e-50 8.2e-48 4.2532e-13 1.45e-10 0.033931 1 0.30119 1 2.362e-19 9.59e-17 1.2889e-17 5.05e-15 1.2186e-14 4.4e-12 5.2572e-11 1.66e-08 1.7292e-05 0.00374 2.0159e-09 5.87e-07 21q 87 (17%) 427 0.051454 1 0.0075524 1 4.1429e-30 1.85e-27 1.7195e-09 5.06e-07 0.037974 1 0.069774 1 1.0458e-17 4.11e-15 8.7189e-15 3.17e-12 3.1805e-16 1.18e-13 1.3233e-13 4.62e-11 3.8485e-07 9.31e-05 4.9858e-10 1.5e-07 22q 136 (26%) 378 0.0038145 0.576 0.0004537 0.0803 2.3007e-58 1.1e-55 1.8547e-19 7.57e-17 0.011646 1 0.65949 1 2.5601e-30 1.15e-27 8.7858e-28 3.91e-25 1.3221e-21 5.58e-19 3.1856e-14 1.14e-11 1.1112e-06 0.000262 4.2745e-13 1.45e-10 xq 130 (25%) 384 0.033593 1 0.0072233 1 1.515e-40 7.01e-38 1.0027e-05 0.00223 0.0016351 0.265 0.47114 1 1.0705e-11 3.43e-09 2.0502e-08 5.48e-06 4.7065e-09 1.33e-06 9.1073e-05 0.0181 0.00018576 0.0351 4.7585e-05 0.00971