Broad GDAC Analyses Status
analyses__2014_04_16__blca Run for Tumor Type: BLCA

CohortBCRClinicalCNLowPMethylationmRNAmRNASeqmiRmiRSeqRPPAMAF
BLCA31119825211225302410252127130

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1TP-Aggregate_Gene_Status00010
2TP-Aggregate_Molecular_Subtype_Clusters00010
3TP-Append_CustomClinical00010
4TP-CoMut1.500010
5TP-CoMut2.000010
6TP-CoMutCV00010
7TP-CoMutMerged00010
8TP-CopyNumber_Clustering_CNMF00010
9TP-CopyNumber_Clustering_CNMF_thresholded00010
10TP-CopyNumber_Gistic200010
11TP-CopyNumber_Gistic2_Postprocess_Focal00010
12TP-CopyNumberLowPass_Gistic200010
13TP-Correlate_Clinical_vs_CopyNumber_Arm00010
14TP-Correlate_Clinical_vs_CopyNumber_Focal00010
15TP-Correlate_Clinical_vs_Methylation00010
16TP-Correlate_Clinical_vs_miR10000
17TP-Correlate_Clinical_vs_miRseq00010
18TP-Correlate_Clinical_vs_Molecular_Subtypes00010
19TP-Correlate_Clinical_vs_mRNA10000
20TP-Correlate_Clinical_vs_mRNAseq00010
21TP-Correlate_Clinical_vs_Mutation00010
22TP-Correlate_Clinical_vs_RPPA00010
23TP-Correlate_CopyNumber_vs_miR10000
24TP-Correlate_CopyNumber_vs_mRNA10000
25TP-Correlate_CopyNumber_vs_mRNAseq00010
26TP-Correlate_Methylation_vs_mRNA00010
27TP-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
28TP-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
29TP-Correlate_molecularSubtype_vs_Mutation00010
30TP-GenerateStickFigures1.500010
31TP-GenerateStickFigures2.000010
32TP-GenerateStickFiguresCV00010
33TP-GenerateStickFiguresMerged00010
34TP-LegoPlotter1.500010
35TP-LegoPlotter2.000010
36TP-LegoPlotterCV00010
37TP-LegoPlotterMerged00010
38TP-MergeMutSigRunResults00010
39TP-Methylation_Clustering_CNMF00010
40TP-miR_Clustering_CNMF10000
41TP-miR_Clustering_Consensus10000
42TP-miR_FindDirectTargets10000
43TP-miRseq_Clustering_CNMF00010
44TP-miRseq_Clustering_Consensus00010
45TP-miRseq_Mature_Clustering_CNMF00010
46TP-miRseq_Mature_Clustering_Consensus00010
47TP-mRNA_Clustering_CNMF10000
48TP-mRNA_Clustering_Consensus10000
49TP-mRNAseq_Clustering_CNMF00010
50TP-mRNAseq_Clustering_Consensus00010
51TP-Mutation_Assessor00010
52TP-Mutation_CHASM00010
53TP-MutSigNozzleReport1.500010
54TP-MutSigNozzleReport2.000010
55TP-MutSigNozzleReportCV00010
56TP-MutSigNozzleReportMerged00010
57TP-MutSigPreprocess1.500010
58TP-MutSigPreprocess2.000010
59TP-MutSigRun1.500010
60TP-MutSigRun2.000010
61TP-MutSigRunCV00010
62TP-Paradigm_mRNA10000
63TP-Paradigm_mRNA_And_CopyNumber10000
64TP-Paradigm_Prepare_mRNA10000
65TP-Paradigm_Prepare_mRNA_And_Copy_Number10000
66TP-Paradigm_Prepare_RNASeq00010
67TP-Paradigm_Prepare_RNASeq_And_Copy_Number00010
68TP-Paradigm_Preprocess_mRNA10000
69TP-ParadigmPreprocess_mRNA10000
70TP-Paradigm_Preprocess_mRNA_And_Copy_Number10000
71TP-Paradigm_Preprocess_RNASeq00010
72TP-ParadigmPreprocess_RNASeq00010
73TP-Paradigm_Preprocess_RNASeq_And_Copy_Number00010
74TP-Paradigm_Report_Preprocess_mRNA10000
75TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
76TP-Paradigm_Report_Preprocess_RNASeq00010
77TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number00010
78TP-Paradigm_RNASeq00010
79TP-Paradigm_RNASeq_And_Copy_Number00010
80TP-Pathway_FindEnrichedGenes10000
81TP-Pathway_Hotnet00010
82TP-Pathway_Paradigm_mRNA10000
83TP-Pathway_Paradigm_mRNA_And_Copy_Number10000
84TP-Pathway_Paradigm_RNASeq00010
85TP-Pathway_Paradigm_RNASeq_And_Copy_Number00010
86TP-ProcessCoverageForMutSig1.500010
87TP-ProcessCoverageForMutSig2.000010
88TP-RPPA_Clustering_CNMF00010
89TP-RPPA_Clustering_Consensus00010
Total2100680

This table generated on Mon May 12 10:15:19 2014