Broad GDAC Analyses Status
analyses__2014_04_16__laml Run for Tumor Type: LAML

CohortBCRClinicalCNLowPMethylationmRNAmRNASeqmiRmiRSeqRPPAMAF
LAML2002001970194017901880197

Note that the links below require Broad internal Firehose login credentials.

PipelineNotRunnableRunnableInProcessSuccessfulUnsuccessful
1TB-Aggregate_Gene_Status00010
2TB-Aggregate_Molecular_Subtype_Clusters00010
3TB-Append_CustomClinical00010
4TB-CoMut1.500010
5TB-CoMut2.000010
6TB-CoMutCV00001
7TB-CoMutMerged00010
8TB-CopyNumber_Clustering_CNMF00010
9TB-CopyNumber_Clustering_CNMF_thresholded00010
10TB-CopyNumber_Gistic200010
11TB-CopyNumber_Gistic2_Postprocess_Focal00010
12TB-CopyNumberLowPass_Gistic210000
13TB-Correlate_Clinical_vs_CopyNumber_Arm00010
14TB-Correlate_Clinical_vs_CopyNumber_Focal00010
15TB-Correlate_Clinical_vs_Methylation00010
16TB-Correlate_Clinical_vs_miR10000
17TB-Correlate_Clinical_vs_miRseq00010
18TB-Correlate_Clinical_vs_Molecular_Subtypes00010
19TB-Correlate_Clinical_vs_mRNA10000
20TB-Correlate_Clinical_vs_mRNAseq00010
21TB-Correlate_Clinical_vs_Mutation00010
22TB-Correlate_Clinical_vs_RPPA10000
23TB-Correlate_CopyNumber_vs_miR10000
24TB-Correlate_CopyNumber_vs_mRNA10000
25TB-Correlate_CopyNumber_vs_mRNAseq00010
26TB-Correlate_Methylation_vs_mRNA00010
27TB-Correlate_molecularSubtype_vs_CopyNumber_Arm00010
28TB-Correlate_molecularSubtype_vs_CopyNumber_Focal00010
29TB-Correlate_molecularSubtype_vs_Mutation00010
30TB-GenerateStickFigures1.500010
31TB-GenerateStickFigures2.000010
32TB-GenerateStickFiguresCV00010
33TB-GenerateStickFiguresMerged00010
34TB-LegoPlotter1.500010
35TB-LegoPlotter2.000010
36TB-LegoPlotterCV00010
37TB-LegoPlotterMerged00010
38TB-MergeMutSigRunResults00010
39TB-Methylation_Clustering_CNMF00010
40TB-miR_Clustering_CNMF10000
41TB-miR_Clustering_Consensus10000
42TB-miR_FindDirectTargets10000
43TB-miRseq_Clustering_CNMF00010
44TB-miRseq_Clustering_Consensus00010
45TB-miRseq_Mature_Clustering_CNMF10000
46TB-miRseq_Mature_Clustering_Consensus10000
47TB-mRNA_Clustering_CNMF10000
48TB-mRNA_Clustering_Consensus10000
49TB-mRNAseq_Clustering_CNMF00010
50TB-mRNAseq_Clustering_Consensus00010
51TB-Mutation_Assessor00010
52TB-Mutation_CHASM00010
53TB-MutSigNozzleReport1.500010
54TB-MutSigNozzleReport2.000010
55TB-MutSigNozzleReportCV00010
56TB-MutSigNozzleReportMerged00010
57TB-MutSigPreprocess1.500010
58TB-MutSigPreprocess2.000010
59TB-MutSigRun1.500010
60TB-MutSigRun2.000010
61TB-MutSigRunCV00010
62TB-Paradigm_mRNA10000
63TB-Paradigm_mRNA_And_CopyNumber10000
64TB-Paradigm_Prepare_mRNA10000
65TB-Paradigm_Prepare_mRNA_And_Copy_Number10000
66TB-Paradigm_Prepare_RNASeq00010
67TB-Paradigm_Prepare_RNASeq_And_Copy_Number00010
68TB-Paradigm_Preprocess_mRNA10000
69TB-ParadigmPreprocess_mRNA10000
70TB-Paradigm_Preprocess_mRNA_And_Copy_Number10000
71TB-Paradigm_Preprocess_RNASeq00010
72TB-ParadigmPreprocess_RNASeq00010
73TB-Paradigm_Preprocess_RNASeq_And_Copy_Number00010
74TB-Paradigm_Report_Preprocess_mRNA10000
75TB-Paradigm_Report_Preprocess_mRNA_And_CopyNumber10000
76TB-Paradigm_Report_Preprocess_RNASeq00010
77TB-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number00010
78TB-Paradigm_RNASeq00010
79TB-Paradigm_RNASeq_And_Copy_Number00010
80TB-Pathway_FindEnrichedGenes10000
81TB-Pathway_Hotnet00010
82TB-Pathway_Paradigm_mRNA10000
83TB-Pathway_Paradigm_mRNA_And_Copy_Number10000
84TB-Pathway_Paradigm_RNASeq00010
85TB-Pathway_Paradigm_RNASeq_And_Copy_Number00010
86TB-ProcessCoverageForMutSig1.500010
87TB-ProcessCoverageForMutSig2.000010
88TB-RPPA_Clustering_CNMF10000
89TB-RPPA_Clustering_Consensus10000
Total2700611

This table generated on Mon May 12 10:15:22 2014