Broad GDAC analyses__2014_04_16__lusc Run Status : LUSC

Cohort	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNASeq	miR	miRSeq	RPPA	MAF
LUSC	493	411	490	0	492	154	489	0	467	195	178

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	NotRunnable	Successful
1	TP-Aggregate_Gene_Status	0	1
2	TP-Aggregate_Molecular_Subtype_Clusters	0	1
3	TP-Append_CustomClinical	0	1
4	TP-CoMut1.5	0	1
5	TP-CoMut2.0	0	1
6	TP-CoMutCV	0	1
7	TP-CoMutMerged	0	1
8	TP-CopyNumber_Clustering_CNMF	0	1
9	TP-CopyNumber_Clustering_CNMF_thresholded	0	1
10	TP-CopyNumber_Gistic2	0	1
11	TP-CopyNumber_Gistic2_Postprocess_Focal	0	1
12	TP-CopyNumberLowPass_Gistic2	1	0
13	TP-Correlate_Clinical_vs_CopyNumber_Arm	0	1
14	TP-Correlate_Clinical_vs_CopyNumber_Focal	0	1
15	TP-Correlate_Clinical_vs_Methylation	0	1
16	TP-Correlate_Clinical_vs_miR	1	0
17	TP-Correlate_Clinical_vs_miRseq	0	1
18	TP-Correlate_Clinical_vs_Molecular_Subtypes	0	1
19	TP-Correlate_Clinical_vs_mRNA	0	1
20	TP-Correlate_Clinical_vs_mRNAseq	0	1
21	TP-Correlate_Clinical_vs_Mutation	0	1
22	TP-Correlate_Clinical_vs_RPPA	0	1
23	TP-Correlate_CopyNumber_vs_miR	1	0
24	TP-Correlate_CopyNumber_vs_mRNA	0	1
25	TP-Correlate_CopyNumber_vs_mRNAseq	0	1
26	TP-Correlate_Methylation_vs_mRNA	0	1
27	TP-Correlate_molecularSubtype_vs_CopyNumber_Arm	0	1
28	TP-Correlate_molecularSubtype_vs_CopyNumber_Focal	0	1
29	TP-Correlate_molecularSubtype_vs_Mutation	0	1
30	TP-GenerateStickFigures1.5	0	1
31	TP-GenerateStickFigures2.0	0	1
32	TP-GenerateStickFiguresCV	0	1
33	TP-GenerateStickFiguresMerged	0	1
34	TP-LegoPlotter1.5	0	1
35	TP-LegoPlotter2.0	0	1
36	TP-LegoPlotterCV	0	1
37	TP-LegoPlotterMerged	0	1
38	TP-MergeMutSigRunResults	0	1
39	TP-Methylation_Clustering_CNMF	0	1
40	TP-miR_Clustering_CNMF	1	0
41	TP-miR_Clustering_Consensus	1	0
42	TP-miR_FindDirectTargets	1	0
43	TP-miRseq_Clustering_CNMF	0	1
44	TP-miRseq_Clustering_Consensus	0	1
45	TP-miRseq_Mature_Clustering_CNMF	0	1
46	TP-miRseq_Mature_Clustering_Consensus	0	1
47	TP-mRNA_Clustering_CNMF	0	1
48	TP-mRNA_Clustering_Consensus	0	1
49	TP-mRNAseq_Clustering_CNMF	0	1
50	TP-mRNAseq_Clustering_Consensus	0	1
51	TP-Mutation_Assessor	0	1
52	TP-Mutation_CHASM	0	1
53	TP-MutSigNozzleReport1.5	0	1
54	TP-MutSigNozzleReport2.0	0	1
55	TP-MutSigNozzleReportCV	0	1
56	TP-MutSigNozzleReportMerged	0	1
57	TP-MutSigPreprocess1.5	0	1
58	TP-MutSigPreprocess2.0	0	1
59	TP-MutSigRun1.5	0	1
60	TP-MutSigRun2.0	0	1
61	TP-MutSigRunCV	0	1
62	TP-Paradigm_mRNA	0	1
63	TP-Paradigm_mRNA_And_CopyNumber	0	1
64	TP-Paradigm_Prepare_mRNA	0	1
65	TP-Paradigm_Prepare_mRNA_And_Copy_Number	0	1
66	TP-Paradigm_Prepare_RNASeq	0	1
67	TP-Paradigm_Prepare_RNASeq_And_Copy_Number	0	1
68	TP-Paradigm_Preprocess_mRNA	0	1
69	TP-ParadigmPreprocess_mRNA	0	1
70	TP-Paradigm_Preprocess_mRNA_And_Copy_Number	0	1
71	TP-Paradigm_Preprocess_RNASeq	0	1
72	TP-ParadigmPreprocess_RNASeq	0	1
73	TP-Paradigm_Preprocess_RNASeq_And_Copy_Number	0	1
74	TP-Paradigm_Report_Preprocess_mRNA	0	1
75	TP-Paradigm_Report_Preprocess_mRNA_And_CopyNumber	0	1
76	TP-Paradigm_Report_Preprocess_RNASeq	0	1
77	TP-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	0	1
78	TP-Paradigm_RNASeq	0	1
79	TP-Paradigm_RNASeq_And_Copy_Number	0	1
80	TP-Pathway_FindEnrichedGenes	0	1
81	TP-Pathway_Hotnet	0	1
82	TP-Pathway_Paradigm_mRNA	0	1
83	TP-Pathway_Paradigm_mRNA_And_Copy_Number	0	1
84	TP-Pathway_Paradigm_RNASeq	0	1
85	TP-Pathway_Paradigm_RNASeq_And_Copy_Number	0	1
86	TP-ProcessCoverageForMutSig1.5	0	1
87	TP-ProcessCoverageForMutSig2.0	0	1
88	TP-RPPA_Clustering_CNMF	0	1
89	TP-RPPA_Clustering_Consensus	0	1
	Total	6	83

This table generated on Mon May 12 10:15:23 2014

Broad GDAC Analyses Status analyses__2014_04_16__lusc Run for Tumor Type: LUSC

Broad GDAC Analyses Status
analyses__2014_04_16__lusc Run for Tumor Type: LUSC