Broad GDAC analyses__2014_04_16__skcm Run Status : SKCM

Cohort	BCR	Clinical	CN	LowP	Methylation	mRNA	mRNASeq	miR	miRSeq	RPPA	MAF
SKCM	448	341	384	118	373	0	371	0	353	204	343

Note that the links below require Broad internal Firehose login credentials.

	Pipeline	NotRunnable	InProcess	Successful
1	TM-Aggregate_Gene_Status	0	0	1
2	TM-Aggregate_Molecular_Subtype_Clusters	0	0	1
3	TM-Append_CustomClinical	0	0	1
4	TM-CoMut1.5	0	0	1
5	TM-CoMut2.0	0	0	1
6	TM-CoMutCV	0	0	1
7	TM-CoMutMerged	0	0	1
8	TM-CopyNumber_Clustering_CNMF	0	0	1
9	TM-CopyNumber_Clustering_CNMF_thresholded	0	0	1
10	TM-CopyNumber_Gistic2	0	0	1
11	TM-CopyNumber_Gistic2_Postprocess_Focal	0	0	1
12	TM-CopyNumberLowPass_Gistic2	0	0	1
13	TM-Correlate_Clinical_vs_CopyNumber_Arm	0	0	1
14	TM-Correlate_Clinical_vs_CopyNumber_Focal	0	0	1
15	TM-Correlate_Clinical_vs_Methylation	0	0	1
16	TM-Correlate_Clinical_vs_miR	1	0	0
17	TM-Correlate_Clinical_vs_miRseq	0	0	1
18	TM-Correlate_Clinical_vs_Molecular_Subtypes	0	0	1
19	TM-Correlate_Clinical_vs_mRNA	1	0	0
20	TM-Correlate_Clinical_vs_mRNAseq	0	0	1
21	TM-Correlate_Clinical_vs_Mutation	0	0	1
22	TM-Correlate_Clinical_vs_RPPA	0	0	1
23	TM-Correlate_CopyNumber_vs_miR	1	0	0
24	TM-Correlate_CopyNumber_vs_mRNA	1	0	0
25	TM-Correlate_CopyNumber_vs_mRNAseq	0	0	1
26	TM-Correlate_Methylation_vs_mRNA	0	0	1
27	TM-Correlate_molecularSubtype_vs_CopyNumber_Arm	0	0	1
28	TM-Correlate_molecularSubtype_vs_CopyNumber_Focal	0	0	1
29	TM-Correlate_molecularSubtype_vs_Mutation	0	0	1
30	TM-GenerateStickFigures1.5	0	0	1
31	TM-GenerateStickFigures2.0	0	0	1
32	TM-GenerateStickFiguresCV	0	0	1
33	TM-GenerateStickFiguresMerged	0	0	1
34	TM-LegoPlotter1.5	0	0	1
35	TM-LegoPlotter2.0	0	0	1
36	TM-LegoPlotterCV	0	0	1
37	TM-LegoPlotterMerged	0	0	1
38	TM-MergeMutSigRunResults	0	0	1
39	TM-Methylation_Clustering_CNMF	0	0	1
40	TM-miR_Clustering_CNMF	1	0	0
41	TM-miR_Clustering_Consensus	1	0	0
42	TM-miR_FindDirectTargets	1	0	0
43	TM-miRseq_Clustering_CNMF	0	0	1
44	TM-miRseq_Clustering_Consensus	0	0	1
45	TM-miRseq_Mature_Clustering_CNMF	0	0	1
46	TM-miRseq_Mature_Clustering_Consensus	0	0	1
47	TM-mRNA_Clustering_CNMF	1	0	0
48	TM-mRNA_Clustering_Consensus	1	0	0
49	TM-mRNAseq_Clustering_CNMF	0	0	1
50	TM-mRNAseq_Clustering_Consensus	0	0	1
51	TM-Mutation_Assessor	0	0	1
52	TM-Mutation_CHASM	0	1	0
53	TM-MutSigNozzleReport1.5	0	0	1
54	TM-MutSigNozzleReport2.0	0	0	1
55	TM-MutSigNozzleReportCV	0	0	1
56	TM-MutSigNozzleReportMerged	0	0	1
57	TM-MutSigPreprocess1.5	0	0	1
58	TM-MutSigPreprocess2.0	0	0	1
59	TM-MutSigRun1.5	0	0	1
60	TM-MutSigRun2.0	0	0	1
61	TM-MutSigRunCV	0	0	1
62	TM-Paradigm_mRNA	1	0	0
63	TM-Paradigm_mRNA_And_CopyNumber	1	0	0
64	TM-Paradigm_Prepare_mRNA	1	0	0
65	TM-Paradigm_Prepare_mRNA_And_Copy_Number	1	0	0
66	TM-Paradigm_Prepare_RNASeq	0	0	1
67	TM-Paradigm_Prepare_RNASeq_And_Copy_Number	0	0	1
68	TM-Paradigm_Preprocess_mRNA	1	0	0
69	TM-ParadigmPreprocess_mRNA	1	0	0
70	TM-Paradigm_Preprocess_mRNA_And_Copy_Number	1	0	0
71	TM-Paradigm_Preprocess_RNASeq	0	0	1
72	TM-ParadigmPreprocess_RNASeq	0	0	1
73	TM-Paradigm_Preprocess_RNASeq_And_Copy_Number	0	0	1
74	TM-Paradigm_Report_Preprocess_mRNA	1	0	0
75	TM-Paradigm_Report_Preprocess_mRNA_And_CopyNumber	1	0	0
76	TM-Paradigm_Report_Preprocess_RNASeq	0	0	1
77	TM-Paradigm_Report_Preprocess_RNASeq_And_Copy_Number	0	0	1
78	TM-Paradigm_RNASeq	0	0	1
79	TM-Paradigm_RNASeq_And_Copy_Number	0	0	1
80	TM-Pathway_FindEnrichedGenes	1	0	0
81	TM-Pathway_Hotnet	0	1	0
82	TM-Pathway_Paradigm_mRNA	1	0	0
83	TM-Pathway_Paradigm_mRNA_And_Copy_Number	1	0	0
84	TM-Pathway_Paradigm_RNASeq	0	0	1
85	TM-Pathway_Paradigm_RNASeq_And_Copy_Number	0	0	1
86	TM-ProcessCoverageForMutSig1.5	0	0	1
87	TM-ProcessCoverageForMutSig2.0	0	0	1
88	TM-RPPA_Clustering_CNMF	0	0	1
89	TM-RPPA_Clustering_Consensus	0	0	1
	Total	21	2	66

This table generated on Mon May 12 10:15:25 2014

Broad GDAC Analyses Status analyses__2014_04_16__skcm Run for Tumor Type: SKCM

Broad GDAC Analyses Status
analyses__2014_04_16__skcm Run for Tumor Type: SKCM