
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/ACC-TP/8282697/ACC-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/ACC-TP/8142726/ACC-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=.05", "-cQ=0.25", "-MF=ALL", "-oT=ACC-TP", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oT=ACC-TP"
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/ACC-TP/8142726/ACC-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/ACC-TP/8282697/ACC-TP.mergedcluster.txt"

nPatients in clinical file=34, in cluster file=92, common to both=34
[1]  8 34
[1] "CN_CNMF"
[1] 3
 1  2  3  4  5 
10  9  3  8  3 
 1  2  3  4  5 
10  9  3  8  3 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3  4  5 
 6  2 12 11  3 
 1  3  4  5 
 6 12 11  3 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3  4 
 9  4 10 11 
 1  2  3  4 
 9  4 10 11 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
 1  2  3 
 8 17  9 
 1  2  3 
 8 17  9 
[1] "MIRSEQ_CNMF"
[1] 3
 1  2  3 
13  7 14 
 1  2  3 
13  7 14 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
 1  2  3 
14  5 15 
 1  2  3 
14  5 15 
[1] "MIRSEQ_MATURE_CNMF"
[1] 3
 1  2  3 
14  7 13 
 1  2  3 
14  7 13 
[1] "MIRSEQ_MATURE_CHIERARCHICAL"
[1] 3
 1  2  3 
14  6 14 
 1  2  3 
14  6 14 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "NEOPLASM.DISEASESTAGE"                 
 [6] "PATHOLOGY.T.STAGE"                     
 [7] "PATHOLOGY.N.STAGE"                     
 [8] "PATHOLOGY.M.STAGE"                     
 [9] "DCCUPLOADDATE"                         
[10] "GENDER"                                
[11] "RADIATIONTHERAPY"                      
[12] "RADIATIONS.RADIATION.REGIMENINDICATION"
[13] "GLEASON_SCORE"                         
[14] "PSA_VALUE"                             
[15] "DAYS_TO_PSA"                           
[16] "BATCHNUMBER"                           

Input Data has 16 rows and 34 columns.

[1] "Batch" "16"   
[1] "Last Follow UP"
TCGA-OR-A5JA TCGA-OR-A5JB TCGA-OR-A5JC TCGA-OR-A5JF TCGA-OR-A5JG TCGA-OR-A5JI 
          NA           NA           NA         1259           NA         1424 
TCGA-OR-A5JJ TCGA-OR-A5JK TCGA-OR-A5JL TCGA-OR-A5JM TCGA-OR-A5JO TCGA-OR-A5JQ 
         309         1255          670           NA          889          674 
TCGA-OR-A5JR TCGA-OR-A5JS TCGA-OR-A5JT TCGA-OR-A5JV TCGA-OR-A5JW TCGA-OR-A5JX 
        3688          383          488         1541         1924          950 
TCGA-OR-A5JY TCGA-OR-A5JZ TCGA-OR-A5K0 TCGA-OR-A5K1 TCGA-OR-A5K2 TCGA-OR-A5K3 
          NA          211         1029         2723           NA         2842 
TCGA-OR-A5K4 TCGA-OR-A5K5 TCGA-OR-A5K6 TCGA-OR-A5K9 TCGA-OR-A5LK TCGA-OU-A5PI 
         528          253         1130           NA         2222          709 
TCGA-PK-A5H8 TCGA-PK-A5H9 TCGA-PK-A5HA TCGA-PK-A5HB 
        3240          307          830         1293 
Variable 1:'AGE':	nDistinctValues=26,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=8,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=26,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'NEOPLASM.DISEASESTAGE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'PATHOLOGY.T.STAGE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY.N.STAGE':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.M.STAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 9:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 13:'GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 16:'BATCH.NUMBER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                   "NEOPLASM.DISEASESTAGE" "PATHOLOGY.T.STAGE"    
[4] "PATHOLOGY.N.STAGE"     "GENDER"               
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 34 columns, 1 survival variables, and 5 non-survival variables.
AGE, nv=26, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=4, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T1 T2 T3 T4 
 4 14  2  9 
[1] "table(vv)"
vv
   T1 T2+T3    T4 
    4    16     9 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
T1 T2 T3 T4 
 4 14  2  9 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


   T1 T2+T3    T4 
    4    16     9 
PATHOLOGY.N.STAGE, nv=2, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = CN_CNMF
D1V1, survival
          sevent
clus2      0 1
  subtype1 6 4
  subtype2 9 0
  subtype3 2 1
  subtype4 5 3
  subtype5 3 0
subtype1 subtype2 subtype3 subtype4 subtype5 
      10        9        3        8        3 
subtype1 subtype2 subtype3 subtype4 subtype5 
       4        0        1        3        0 
$subtype1
TCGA-OR-A5JB TCGA-OR-A5JM TCGA-OR-A5JO TCGA-OR-A5JV TCGA-OR-A5JY TCGA-OR-A5K0 
       18.12        18.48        29.23        50.66        18.15        33.83 
TCGA-OR-A5K2 TCGA-OR-A5K5 TCGA-OR-A5K6 TCGA-PK-A5H9 
       32.68         8.32        37.15        10.09 

$subtype2
TCGA-OR-A5JF TCGA-OR-A5JK TCGA-OR-A5JR TCGA-OR-A5JT TCGA-OR-A5JX TCGA-OR-A5JZ 
       41.39        41.26       121.25        16.04        31.23         6.94 
TCGA-OR-A5K1 TCGA-OR-A5K3 TCGA-OR-A5K4 
       89.52        93.44        17.36 

$subtype3
TCGA-OR-A5JG TCGA-OR-A5JJ TCGA-OU-A5PI 
       17.79        10.16        23.31 

$subtype4
TCGA-OR-A5JA TCGA-OR-A5JC TCGA-OR-A5JL TCGA-OR-A5JS TCGA-OR-A5JW TCGA-OR-A5K9 
       30.31        57.53        22.03        12.59        63.25        11.31 
TCGA-PK-A5HA TCGA-PK-A5HB 
       27.29        42.51 

$subtype5
TCGA-OR-A5JI TCGA-OR-A5JQ TCGA-OR-A5LK 
       46.82        22.16        73.05 

subtype1 subtype2 subtype3 subtype4 subtype5 
    8.32     6.94    10.16    11.31    22.16 
subtype1 subtype2 subtype3 subtype4 subtype5 
   50.66   121.25    23.31    63.25    73.05 
subtype1 subtype2 subtype3 subtype4 subtype5 
  23.855   41.260   17.790   28.800   46.820 
[1] "8.3 - 50.7 (23.9)"  "6.9 - 121.2 (41.3)" "10.2 - 23.3 (17.8)"
[4] "11.3 - 63.2 (28.8)" "22.2 - 73.0 (46.8)"
 [1] "subtype4" "subtype1" "subtype4" "subtype2" "subtype3" "subtype5"
 [7] "subtype3" "subtype2" "subtype4" "subtype1" "subtype1" "subtype5"
[13] "subtype2" "subtype4" "subtype2" "subtype1" "subtype4" "subtype2"
[19] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[25] "subtype2" "subtype1" "subtype1" "subtype4" "subtype5" "subtype3"
[31] "subtype1" "subtype4" "subtype4"
 [1] "subtype4" "subtype1" "subtype4" "subtype2" "subtype3" "subtype5"
 [7] "subtype3" "subtype2" "subtype4" "subtype1" "subtype1" "subtype5"
[13] "subtype2" "subtype4" "subtype2" "subtype1" "subtype4" "subtype2"
[19] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[25] "subtype2" "subtype1" "subtype1" "subtype4" "subtype5" "subtype3"
[31] "subtype1" "subtype4" "subtype4"
 [1] "subtype4" "subtype1" "subtype4" "subtype2" "subtype3" "subtype5"
 [7] "subtype3" "subtype2" "subtype4" "subtype1" "subtype1" "subtype5"
[13] "subtype2" "subtype4" "subtype2" "subtype1" "subtype4" "subtype2"
[19] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[25] "subtype2" "subtype1" "subtype1" "subtype4" "subtype5" "subtype3"
[31] "subtype1" "subtype4" "subtype4"
D1V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1       1        3         2        3
  subtype2       1        5         2        1
  subtype3       0        0         0        3
  subtype4       1        3         0        1
  subtype5       1        2         0        0
D1V3, multiclass
          vv
clus       T1 T2+T3 T4
  subtype1  1     4  4
  subtype2  1     6  2
  subtype3  0     1  2
  subtype4  1     3  1
  subtype5  1     2  0
D1V4, multiclass
D1V5, binary
          cls
clus       0 1
  subtype1 8 1
  subtype2 9 0
  subtype3 0 3
  subtype4 6 0
  subtype5 3 0
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    8    1
  subtype2    9    0
  subtype3    0    3
  subtype4    6    0
  subtype5    3    0
D1V6, binary
          cls
clus       0 1
  subtype1 8 2
  subtype2 3 6
  subtype3 1 2
  subtype4 4 4
  subtype5 1 2
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    8    2
  subtype2    3    6
  subtype3    1    2
  subtype4    4    4
  subtype5    1    2

Clustering(2) Variable = METHLYATION_CNMF
D2V1, survival
          sevent
clus2       0  1
  subtype1  2  4
  subtype3  9  3
  subtype4 10  1
  subtype5  3  0
subtype1 subtype3 subtype4 subtype5 
       6       12       11        3 
subtype1 subtype3 subtype4 subtype5 
       4        3        1        0 
$subtype1
TCGA-OR-A5JM TCGA-OR-A5JY TCGA-OR-A5K0 TCGA-OR-A5K2 TCGA-OR-A5K5 TCGA-OR-A5K9 
       18.48        18.15        33.83        32.68         8.32        11.31 

$subtype3
TCGA-OR-A5JA TCGA-OR-A5JC TCGA-OR-A5JG TCGA-OR-A5JI TCGA-OR-A5JJ TCGA-OR-A5JW 
       30.31        57.53        17.79        46.82        10.16        63.25 
TCGA-OR-A5JX TCGA-OR-A5K3 TCGA-OU-A5PI TCGA-PK-A5H8 TCGA-PK-A5HA TCGA-PK-A5HB 
       31.23        93.44        23.31       106.52        27.29        42.51 

$subtype4
TCGA-OR-A5JB TCGA-OR-A5JK TCGA-OR-A5JO TCGA-OR-A5JR TCGA-OR-A5JT TCGA-OR-A5JV 
       18.12        41.26        29.23       121.25        16.04        50.66 
TCGA-OR-A5JZ TCGA-OR-A5K1 TCGA-OR-A5K4 TCGA-OR-A5LK TCGA-PK-A5H9 
        6.94        89.52        17.36        73.05        10.09 

$subtype5
TCGA-OR-A5JL TCGA-OR-A5JQ TCGA-OR-A5JS 
       22.03        22.16        12.59 

subtype1 subtype3 subtype4 subtype5 
    8.32    10.16     6.94    12.59 
subtype1 subtype3 subtype4 subtype5 
   33.83   106.52   121.25    22.16 
subtype1 subtype3 subtype4 subtype5 
  18.315   36.870   29.230   22.030 
[1] "8.3 - 33.8 (18.3)"   "10.2 - 106.5 (36.9)" "6.9 - 121.2 (29.2)" 
[4] "12.6 - 22.2 (22.0)" 
 [1] "subtype3" "subtype4" "subtype3" "subtype3" "subtype3" "subtype3"
 [7] "subtype4" "subtype5" "subtype1" "subtype4" "subtype5" "subtype4"
[13] "subtype5" "subtype4" "subtype4" "subtype3" "subtype3" "subtype1"
[19] "subtype4" "subtype1" "subtype4" "subtype1" "subtype3" "subtype4"
[25] "subtype1" "subtype1" "subtype4" "subtype3" "subtype3" "subtype4"
[31] "subtype3" "subtype3"
 [1] "subtype3" "subtype4" "subtype3" "subtype3" "subtype3" "subtype3"
 [7] "subtype4" "subtype5" "subtype1" "subtype4" "subtype5" "subtype4"
[13] "subtype5" "subtype4" "subtype4" "subtype3" "subtype3" "subtype1"
[19] "subtype4" "subtype1" "subtype4" "subtype1" "subtype3" "subtype4"
[25] "subtype1" "subtype1" "subtype4" "subtype3" "subtype3" "subtype4"
[31] "subtype3" "subtype3"
 [1] "subtype3" "subtype4" "subtype3" "subtype3" "subtype3" "subtype3"
 [7] "subtype4" "subtype5" "subtype1" "subtype4" "subtype5" "subtype4"
[13] "subtype5" "subtype4" "subtype4" "subtype3" "subtype3" "subtype1"
[19] "subtype4" "subtype1" "subtype4" "subtype1" "subtype3" "subtype4"
[25] "subtype1" "subtype1" "subtype4" "subtype3" "subtype3" "subtype4"
[31] "subtype3" "subtype3"
D2V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1       0        2         2        2
  subtype3       1        2         1        4
  subtype4       2        5         1        2
  subtype5       1        2         0        0
D2V3, multiclass
          vv
clus       T1 T2+T3 T4
  subtype1  0     3  3
  subtype3  1     4  3
  subtype4  2     5  3
  subtype5  1     2  0
D2V4, multiclass
D2V5, binary
          cls
clus        0  1
  subtype1  5  1
  subtype3  6  3
  subtype4 10  0
  subtype5  3  0
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    5    1
  subtype3    6    3
  subtype4   10    0
  subtype5    3    0
   clus
vv  subtype1 subtype3 subtype4 subtype5
  0        5        6       10        3
  1        1        3        0        0
D2V6, binary
          cls
clus        0  1
  subtype1  6  0
  subtype3  2 10
  subtype4  4  7
  subtype5  3  0
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    6    0
  subtype3    2   10
  subtype4    4    7
  subtype5    3    0
        clus
vv       subtype1 subtype3 subtype4 subtype5
  FEMALE        6        2        4        3
  MALE          0       10        7        0

Clustering(3) Variable = MRNASEQ_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1  4  5
  subtype2  4  0
  subtype3  7  3
  subtype4 11  0
subtype1 subtype2 subtype3 subtype4 
       9        4       10       11 
subtype1 subtype2 subtype3 subtype4 
       5        0        3        0 
$subtype1
TCGA-OR-A5JB TCGA-OR-A5JM TCGA-OR-A5JS TCGA-OR-A5JY TCGA-OR-A5K0 TCGA-OR-A5K2 
       18.12        18.48        12.59        18.15        33.83        32.68 
TCGA-OR-A5K5 TCGA-OR-A5K6 TCGA-OR-A5K9 
        8.32        37.15        11.31 

$subtype2
TCGA-OR-A5JF TCGA-OR-A5JJ TCGA-OR-A5JX TCGA-OU-A5PI 
       41.39        10.16        31.23        23.31 

$subtype3
TCGA-OR-A5JA TCGA-OR-A5JC TCGA-OR-A5JG TCGA-OR-A5JL TCGA-OR-A5JV TCGA-OR-A5JW 
       30.31        57.53        17.79        22.03        50.66        63.25 
TCGA-OR-A5K3 TCGA-OR-A5K4 TCGA-PK-A5H8 TCGA-PK-A5HB 
       93.44        17.36       106.52        42.51 

$subtype4
TCGA-OR-A5JI TCGA-OR-A5JK TCGA-OR-A5JO TCGA-OR-A5JQ TCGA-OR-A5JR TCGA-OR-A5JT 
       46.82        41.26        29.23        22.16       121.25        16.04 
TCGA-OR-A5JZ TCGA-OR-A5K1 TCGA-OR-A5LK TCGA-PK-A5H9 TCGA-PK-A5HA 
        6.94        89.52        73.05        10.09        27.29 

subtype1 subtype2 subtype3 subtype4 
    8.32    10.16    17.36     6.94 
subtype1 subtype2 subtype3 subtype4 
   37.15    41.39   106.52   121.25 
subtype1 subtype2 subtype3 subtype4 
  18.150   27.270   46.585   29.230 
[1] "8.3 - 37.1 (18.1)"   "10.2 - 41.4 (27.3)"  "17.4 - 106.5 (46.6)"
[4] "6.9 - 121.2 (29.2)" 
 [1] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype4"
 [7] "subtype2" "subtype4" "subtype3" "subtype1" "subtype4" "subtype4"
[13] "subtype4" "subtype1" "subtype4" "subtype3" "subtype3" "subtype2"
[19] "subtype1" "subtype4" "subtype1" "subtype4" "subtype1" "subtype3"
[25] "subtype3" "subtype1" "subtype1" "subtype1" "subtype4" "subtype2"
[31] "subtype3" "subtype4" "subtype4" "subtype3"
 [1] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype4"
 [7] "subtype2" "subtype4" "subtype3" "subtype1" "subtype4" "subtype4"
[13] "subtype4" "subtype1" "subtype4" "subtype3" "subtype3" "subtype2"
[19] "subtype1" "subtype4" "subtype1" "subtype4" "subtype1" "subtype3"
[25] "subtype3" "subtype1" "subtype1" "subtype1" "subtype4" "subtype2"
[31] "subtype3" "subtype4" "subtype4" "subtype3"
 [1] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype4"
 [7] "subtype2" "subtype4" "subtype3" "subtype1" "subtype4" "subtype4"
[13] "subtype4" "subtype1" "subtype4" "subtype3" "subtype3" "subtype2"
[19] "subtype1" "subtype4" "subtype1" "subtype4" "subtype1" "subtype3"
[25] "subtype3" "subtype1" "subtype1" "subtype1" "subtype4" "subtype2"
[31] "subtype3" "subtype4" "subtype4" "subtype3"
D3V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1       0        4         2        3
  subtype2       0        1         1        2
  subtype3       1        3         1        2
  subtype4       3        5         0        1
D3V3, multiclass
          vv
clus       T1 T2+T3 T4
  subtype1  0     5  4
  subtype2  0     3  1
  subtype3  1     3  3
  subtype4  3     5  1
D3V4, multiclass
D3V5, binary
          cls
clus        0  1
  subtype1  8  1
  subtype2  2  2
  subtype3  6  1
  subtype4 10  0
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    8    1
  subtype2    2    2
  subtype3    6    1
  subtype4   10    0
   clus
vv  subtype1 subtype2 subtype3 subtype4
  0        8        2        6       10
  1        1        2        1        0
D3V6, binary
          cls
clus       0 1
  subtype1 8 1
  subtype2 2 2
  subtype3 3 7
  subtype4 4 7
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    8    1
  subtype2    2    2
  subtype3    3    7
  subtype4    4    7
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE        8        2        3        4
  MALE          1        2        7        7

Clustering(4) Variable = MRNASEQ_CHIERARCHICAL
D4V1, survival
          sevent
clus2       0  1
  subtype1  4  4
  subtype2 16  1
  subtype3  6  3
subtype1 subtype2 subtype3 
       8       17        9 
subtype1 subtype2 subtype3 
       4        1        3 
$subtype1
TCGA-OR-A5JM TCGA-OR-A5JS TCGA-OR-A5JY TCGA-OR-A5K0 TCGA-OR-A5K2 TCGA-OR-A5K5 
       18.48        12.59        18.15        33.83        32.68         8.32 
TCGA-OR-A5K6 TCGA-OR-A5K9 
       37.15        11.31 

$subtype2
TCGA-OR-A5JB TCGA-OR-A5JI TCGA-OR-A5JK TCGA-OR-A5JL TCGA-OR-A5JO TCGA-OR-A5JQ 
       18.12        46.82        41.26        22.03        29.23        22.16 
TCGA-OR-A5JR TCGA-OR-A5JT TCGA-OR-A5JV TCGA-OR-A5JZ TCGA-OR-A5K1 TCGA-OR-A5K3 
      121.25        16.04        50.66         6.94        89.52        93.44 
TCGA-OR-A5K4 TCGA-OR-A5LK TCGA-PK-A5H8 TCGA-PK-A5H9 TCGA-PK-A5HA 
       17.36        73.05       106.52        10.09        27.29 

$subtype3
TCGA-OR-A5JA TCGA-OR-A5JC TCGA-OR-A5JF TCGA-OR-A5JG TCGA-OR-A5JJ TCGA-OR-A5JW 
       30.31        57.53        41.39        17.79        10.16        63.25 
TCGA-OR-A5JX TCGA-OU-A5PI TCGA-PK-A5HB 
       31.23        23.31        42.51 

subtype1 subtype2 subtype3 
    8.32     6.94    10.16 
subtype1 subtype2 subtype3 
   37.15   121.25    63.25 
subtype1 subtype2 subtype3 
  18.315   29.230   31.230 
[1] "8.3 - 37.1 (18.3)"  "6.9 - 121.2 (29.2)" "10.2 - 63.2 (31.2)"
 [1] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [7] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[13] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[19] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[31] "subtype2" "subtype2" "subtype2" "subtype3"
 [1] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [7] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[13] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[19] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[31] "subtype2" "subtype2" "subtype2" "subtype3"
 [1] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [7] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[13] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[19] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
[25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[31] "subtype2" "subtype2" "subtype2" "subtype3"
D4V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1       0        4         2        2
  subtype2       4        7         1        2
  subtype3       0        2         1        4
D4V3, multiclass
          vv
clus       T1 T2+T3 T4
  subtype1  0     5  3
  subtype2  4     7  3
  subtype3  0     4  3
D4V4, multiclass
D4V5, binary
          cls
clus        0  1
  subtype1  7  1
  subtype2 15  0
  subtype3  4  3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    7    1
  subtype2   15    0
  subtype3    4    3
   clus
vv  subtype1 subtype2 subtype3
  0        7       15        4
  1        1        0        3
D4V6, binary
          cls
clus        0  1
  subtype1  8  0
  subtype2  6 11
  subtype3  3  6
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    8    0
  subtype2    6   11
  subtype3    3    6
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        8        6        3
  MALE          0       11        6

Clustering(5) Variable = MIRSEQ_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1  9  4
  subtype2  4  3
  subtype3 13  1
subtype1 subtype2 subtype3 
      13        7       14 
subtype1 subtype2 subtype3 
       4        3        1 
$subtype1
TCGA-OR-A5JA TCGA-OR-A5JG TCGA-OR-A5JJ TCGA-OR-A5JK TCGA-OR-A5JL TCGA-OR-A5JS 
       30.31        17.79        10.16        41.26        22.03        12.59 
TCGA-OR-A5K2 TCGA-OR-A5K4 TCGA-OR-A5K6 TCGA-OR-A5K9 TCGA-OU-A5PI TCGA-PK-A5H8 
       32.68        17.36        37.15        11.31        23.31       106.52 
TCGA-PK-A5H9 
       10.09 

$subtype2
TCGA-OR-A5JB TCGA-OR-A5JF TCGA-OR-A5JM TCGA-OR-A5JY TCGA-OR-A5K0 TCGA-OR-A5K5 
       18.12        41.39        18.48        18.15        33.83         8.32 
TCGA-PK-A5HB 
       42.51 

$subtype3
TCGA-OR-A5JC TCGA-OR-A5JI TCGA-OR-A5JO TCGA-OR-A5JQ TCGA-OR-A5JR TCGA-OR-A5JT 
       57.53        46.82        29.23        22.16       121.25        16.04 
TCGA-OR-A5JV TCGA-OR-A5JW TCGA-OR-A5JX TCGA-OR-A5JZ TCGA-OR-A5K1 TCGA-OR-A5K3 
       50.66        63.25        31.23         6.94        89.52        93.44 
TCGA-OR-A5LK TCGA-PK-A5HA 
       73.05        27.29 

subtype1 subtype2 subtype3 
   10.09     8.32     6.94 
subtype1 subtype2 subtype3 
  106.52    42.51   121.25 
subtype1 subtype2 subtype3 
   22.03    18.48    48.74 
[1] "10.1 - 106.5 (22.0)" "8.3 - 42.5 (18.5)"   "6.9 - 121.2 (48.7)" 
 [1] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [7] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[13] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[25] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[31] "subtype1" "subtype1" "subtype3" "subtype2"
 [1] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [7] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[13] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[25] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[31] "subtype1" "subtype1" "subtype3" "subtype2"
 [1] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [7] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[13] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[25] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[31] "subtype1" "subtype1" "subtype3" "subtype2"
D5V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1       1        3         2        5
  subtype2       0        2         1        3
  subtype3       3        8         1        0
D5V3, multiclass
          vv
clus       T1 T2+T3 T4
  subtype1  1     4  6
  subtype2  0     3  3
  subtype3  3     9  0
D5V4, multiclass
D5V5, binary
          cls
clus        0  1
  subtype1  8  3
  subtype2  5  1
  subtype3 13  0
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    8    3
  subtype2    5    1
  subtype3   13    0
   clus
vv  subtype1 subtype2 subtype3
  0        8        5       13
  1        3        1        0
D5V6, binary
          cls
clus        0  1
  subtype1  9  4
  subtype2  5  2
  subtype3  3 11
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    9    4
  subtype2    5    2
  subtype3    3   11
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        9        5        3
  MALE          4        2       11

Clustering(6) Variable = MIRSEQ_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype1 11  3
  subtype2  4  1
  subtype3 11  4
subtype1 subtype2 subtype3 
      14        5       15 
subtype1 subtype2 subtype3 
       3        1        4 
$subtype1
TCGA-OR-A5JB TCGA-OR-A5JF TCGA-OR-A5JM TCGA-OR-A5JQ TCGA-OR-A5JR TCGA-OR-A5JT 
       18.12        41.39        18.48        22.16       121.25        16.04 
TCGA-OR-A5JV TCGA-OR-A5JW TCGA-OR-A5JY TCGA-OR-A5JZ TCGA-OR-A5K0 TCGA-OR-A5K1 
       50.66        63.25        18.15         6.94        33.83        89.52 
TCGA-OR-A5LK TCGA-PK-A5HA 
       73.05        27.29 

$subtype2
TCGA-OR-A5JC TCGA-OR-A5JI TCGA-OR-A5JO TCGA-OR-A5JX TCGA-OR-A5K3 
       57.53        46.82        29.23        31.23        93.44 

$subtype3
TCGA-OR-A5JA TCGA-OR-A5JG TCGA-OR-A5JJ TCGA-OR-A5JK TCGA-OR-A5JL TCGA-OR-A5JS 
       30.31        17.79        10.16        41.26        22.03        12.59 
TCGA-OR-A5K2 TCGA-OR-A5K4 TCGA-OR-A5K5 TCGA-OR-A5K6 TCGA-OR-A5K9 TCGA-OU-A5PI 
       32.68        17.36         8.32        37.15        11.31        23.31 
TCGA-PK-A5H8 TCGA-PK-A5H9 TCGA-PK-A5HB 
      106.52        10.09        42.51 

subtype1 subtype2 subtype3 
    6.94    29.23     8.32 
subtype1 subtype2 subtype3 
  121.25    93.44   106.52 
subtype1 subtype2 subtype3 
   30.56    46.82    22.03 
[1] "6.9 - 121.2 (30.6)" "29.2 - 93.4 (46.8)" "8.3 - 106.5 (22.0)"
 [1] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [7] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[13] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[31] "subtype3" "subtype3" "subtype1" "subtype3"
 [1] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [7] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[13] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[31] "subtype3" "subtype3" "subtype1" "subtype3"
 [1] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype2"
 [7] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[13] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
[19] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[25] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[31] "subtype3" "subtype3" "subtype1" "subtype3"
D6V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1       1        9         0        3
  subtype2       2        1         1        0
  subtype3       1        3         3        5
D6V3, multiclass
          vv
clus       T1 T2+T3 T4
  subtype1  1     9  3
  subtype2  2     2  0
  subtype3  1     5  6
D6V4, multiclass
D6V5, binary
          cls
clus        0  1
  subtype1 13  1
  subtype2  4  0
  subtype3  9  3
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   13    1
  subtype2    4    0
  subtype3    9    3
   clus
vv  subtype1 subtype2 subtype3
  0       13        4        9
  1        1        0        3
D6V6, binary
          cls
clus        0  1
  subtype1  6  8
  subtype2  1  4
  subtype3 10  5
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    6    8
  subtype2    1    4
  subtype3   10    5
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        6        1       10
  MALE          8        4        5

Clustering(7) Variable = MIRSEQ_MATURE_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1 10  4
  subtype2  4  3
  subtype3 12  1
subtype1 subtype2 subtype3 
      14        7       13 
subtype1 subtype2 subtype3 
       4        3        1 
$subtype1
TCGA-OR-A5JA TCGA-OR-A5JG TCGA-OR-A5JJ TCGA-OR-A5JK TCGA-OR-A5JL TCGA-OR-A5JS 
       30.31        17.79        10.16        41.26        22.03        12.59 
TCGA-OR-A5K2 TCGA-OR-A5K4 TCGA-OR-A5K5 TCGA-OR-A5K6 TCGA-OR-A5K9 TCGA-OU-A5PI 
       32.68        17.36         8.32        37.15        11.31        23.31 
TCGA-PK-A5H8 TCGA-PK-A5H9 
      106.52        10.09 

$subtype2
TCGA-OR-A5JB TCGA-OR-A5JF TCGA-OR-A5JM TCGA-OR-A5JW TCGA-OR-A5JY TCGA-OR-A5K0 
       18.12        41.39        18.48        63.25        18.15        33.83 
TCGA-PK-A5HB 
       42.51 

$subtype3
TCGA-OR-A5JC TCGA-OR-A5JI TCGA-OR-A5JO TCGA-OR-A5JQ TCGA-OR-A5JR TCGA-OR-A5JT 
       57.53        46.82        29.23        22.16       121.25        16.04 
TCGA-OR-A5JV TCGA-OR-A5JX TCGA-OR-A5JZ TCGA-OR-A5K1 TCGA-OR-A5K3 TCGA-OR-A5LK 
       50.66        31.23         6.94        89.52        93.44        73.05 
TCGA-PK-A5HA 
       27.29 

subtype1 subtype2 subtype3 
    8.32    18.12     6.94 
subtype1 subtype2 subtype3 
  106.52    63.25   121.25 
subtype1 subtype2 subtype3 
   19.91    33.83    46.82 
[1] "8.3 - 106.5 (19.9)" "18.1 - 63.2 (33.8)" "6.9 - 121.2 (46.8)"
 [1] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [7] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[13] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[31] "subtype1" "subtype1" "subtype3" "subtype2"
 [1] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [7] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[13] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[31] "subtype1" "subtype1" "subtype3" "subtype2"
 [1] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [7] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[13] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[19] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[31] "subtype1" "subtype1" "subtype3" "subtype2"
D7V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1       1        3         3        5
  subtype2       0        3         0        3
  subtype3       3        7         1        0
D7V3, multiclass
          vv
clus       T1 T2+T3 T4
  subtype1  1     5  6
  subtype2  0     3  3
  subtype3  3     8  0
D7V4, multiclass
D7V5, binary
          cls
clus        0  1
  subtype1  9  3
  subtype2  5  1
  subtype3 12  0
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    9    3
  subtype2    5    1
  subtype3   12    0
   clus
vv  subtype1 subtype2 subtype3
  0        9        5       12
  1        3        1        0
D7V6, binary
          cls
clus        0  1
  subtype1 10  4
  subtype2  4  3
  subtype3  3 10
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   10    4
  subtype2    4    3
  subtype3    3   10
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       10        4        3
  MALE          4        3       10

Clustering(8) Variable = MIRSEQ_MATURE_CHIERARCHICAL
D8V1, survival
          sevent
clus2       0  1
  subtype1 10  4
  subtype2  5  1
  subtype3 11  3
subtype1 subtype2 subtype3 
      14        6       14 
subtype1 subtype2 subtype3 
       4        1        3 
$subtype1
TCGA-OR-A5JA TCGA-OR-A5JG TCGA-OR-A5JJ TCGA-OR-A5JK TCGA-OR-A5JL TCGA-OR-A5JS 
       30.31        17.79        10.16        41.26        22.03        12.59 
TCGA-OR-A5K2 TCGA-OR-A5K4 TCGA-OR-A5K5 TCGA-OR-A5K6 TCGA-OR-A5K9 TCGA-OU-A5PI 
       32.68        17.36         8.32        37.15        11.31        23.31 
TCGA-PK-A5H8 TCGA-PK-A5HB 
      106.52        42.51 

$subtype2
TCGA-OR-A5JC TCGA-OR-A5JI TCGA-OR-A5JO TCGA-OR-A5JX TCGA-OR-A5K3 TCGA-PK-A5H9 
       57.53        46.82        29.23        31.23        93.44        10.09 

$subtype3
TCGA-OR-A5JB TCGA-OR-A5JF TCGA-OR-A5JM TCGA-OR-A5JQ TCGA-OR-A5JR TCGA-OR-A5JT 
       18.12        41.39        18.48        22.16       121.25        16.04 
TCGA-OR-A5JV TCGA-OR-A5JW TCGA-OR-A5JY TCGA-OR-A5JZ TCGA-OR-A5K0 TCGA-OR-A5K1 
       50.66        63.25        18.15         6.94        33.83        89.52 
TCGA-OR-A5LK TCGA-PK-A5HA 
       73.05        27.29 

subtype1 subtype2 subtype3 
    8.32    10.09     6.94 
subtype1 subtype2 subtype3 
  106.52    93.44   121.25 
subtype1 subtype2 subtype3 
  22.670   39.025   30.560 
[1] "8.3 - 106.5 (22.7)" "10.1 - 93.4 (39.0)" "6.9 - 121.2 (30.6)"
 [1] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [7] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[13] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[19] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[31] "subtype1" "subtype2" "subtype3" "subtype1"
 [1] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [7] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[13] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[19] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[31] "subtype1" "subtype2" "subtype3" "subtype1"
 [1] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype2"
 [7] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[13] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[19] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[31] "subtype1" "subtype2" "subtype3" "subtype1"
D8V2, continuous
          vv
clus       STAGE I STAGE II STAGE III STAGE IV
  subtype1       1        3         3        5
  subtype2       2        1         1        0
  subtype3       1        9         0        3
D8V3, multiclass
          vv
clus       T1 T2+T3 T4
  subtype1  1     5  6
  subtype2  2     2  0
  subtype3  1     9  3
D8V4, multiclass
D8V5, binary
          cls
clus        0  1
  subtype1  9  3
  subtype2  4  0
  subtype3 13  1
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    9    3
  subtype2    4    0
  subtype3   13    1
   clus
vv  subtype1 subtype2 subtype3
  0        9        4       13
  1        3        0        1
D8V6, binary
          cls
clus       0 1
  subtype1 9 5
  subtype2 2 4
  subtype3 6 8
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    9    5
  subtype2    2    4
  subtype3    6    8
        clus
vv       subtype1 subtype2 subtype3
  FEMALE        9        2        6
  MALE          5        4        8
> q(save="no")
