
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/ACC-TP/8282864/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/ACC-TP/8282697/ACC-TP.transferedmergedcluster.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=ACC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oT=ACC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/ACC-TP/8282697/ACC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/ACC-TP/8282864/transformed.cor.cli.txt"

nPatients in clinical file=92, in cluster file=90, common to both=90
[1] 80 90
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                4                86 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                4                86 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
                8                82 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
                8                82 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               13                77 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               13                77 
[1] "2Q GAIN MUTATION ANALYSIS"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               12                78 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               12                78 
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               13                77 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               13                77 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               15                75 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               15                75 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               37                53 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               37                53 
[1] "4Q GAIN MUTATION ANALYSIS"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               33                57 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               33                57 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               57                33 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               57                33 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               53                37 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               53                37 
[1] "6P GAIN MUTATION ANALYSIS"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               18                72 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               18                72 
[1] "6Q GAIN MUTATION ANALYSIS"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               16                74 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               16                74 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               48                42 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               48                42 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               48                42 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               48                42 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               32                58 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               32                58 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               38                52 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               38                52 
[1] "9P GAIN MUTATION ANALYSIS"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               20                70 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               20                70 
[1] "9Q GAIN MUTATION ANALYSIS"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               29                61 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               29                61 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                25                 65 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                25                 65 
[1] "10Q GAIN MUTATION ANALYSIS"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                26                 64 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                26                 64 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 5                 85 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 5                 85 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 6                 84 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 6                 84 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                64                 26 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                64                 26 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                64                 26 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                64                 26 
[1] "13Q GAIN MUTATION ANALYSIS"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 6                 84 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 6                 84 
[1] "14Q GAIN MUTATION ANALYSIS"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                21                 69 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                21                 69 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                11                 79 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                11                 79 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                49                 41 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                49                 41 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                47                 43 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                47                 43 
[1] "17P GAIN MUTATION ANALYSIS"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 5                 85 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 5                 85 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 7                 83 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 7                 83 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 6                 84 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 6                 84 
[1] "18Q GAIN MUTATION ANALYSIS"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 5                 85 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 5                 85 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                56                 34 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                56                 34 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                52                 38 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                52                 38 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                46                 44 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                46                 44 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                49                 41 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                49                 41 
[1] "21Q GAIN MUTATION ANALYSIS"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                31                 59 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                31                 59 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 3                 87 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 3                 87 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               40                50 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               40                50 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               29                61 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               29                61 
[1] "1Q LOSS MUTATION ANALYSIS"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               20                70 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               20                70 
[1] "2P LOSS MUTATION ANALYSIS"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               17                73 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               17                73 
[1] "2Q LOSS MUTATION ANALYSIS"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               15                75 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               15                75 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               20                70 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               20                70 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               20                70 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               20                70 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               10                80 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               10                80 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               11                79 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               11                79 
[1] "5P LOSS MUTATION ANALYSIS"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                8                82 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                8                82 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                7                83 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                7                83 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               19                71 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               19                71 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               22                68 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               22                68 
[1] "7P LOSS MUTATION ANALYSIS"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                5                85 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                5                85 
[1] "7Q LOSS MUTATION ANALYSIS"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                6                84 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                6                84 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               16                74 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               16                74 
[1] "8Q LOSS MUTATION ANALYSIS"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               12                78 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               12                78 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               20                70 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               20                70 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               11                79 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               11                79 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                12                 78 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                12                 78 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                10                 80 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                10                 80 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                24                 66 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                24                 66 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                23                 67 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                23                 67 
[1] "12P LOSS MUTATION ANALYSIS"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 5                 85 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 5                 85 
[1] "12Q LOSS MUTATION ANALYSIS"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 4                 86 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 4                 86 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                39                 51 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                39                 51 
[1] "14Q LOSS MUTATION ANALYSIS"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                18                 72 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                18                 72 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                21                 69 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                21                 69 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 6                 84 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 6                 84 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 5                 85 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 5                 85 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                32                 58 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                32                 58 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                24                 66 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                24                 66 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                37                 53 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                37                 53 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                35                 55 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                35                 55 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 5                 85 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 5                 85 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 4                 86 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 4                 86 
[1] "20P LOSS MUTATION ANALYSIS"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 9                 81 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 9                 81 
[1] "20Q LOSS MUTATION ANALYSIS"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 3                 87 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 3                 87 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                15                 75 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                15                 75 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                48                 42 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                48                 42 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               17                73 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               17                73 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 8 rows and 90 columns.

Variable 1:'CN_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "CN_CNMF"                     "METHLYATION_CNMF"           
[3] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
[5] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[7] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 90 columns, 0 survival variables, and 8 non-survival variables.
CN_CNMF, nv=5, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P GAIN MUTATED        2      0      0      2      0
  1P GAIN WILD-TYPE     30     24     15      8      9
D1V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P GAIN MUTATED        1      0      0      1      0
  1P GAIN WILD-TYPE     17     11     20     17     11
D1V2, multiclass
[1] "Remove cluster labels:" "1P GAIN MUTATED"       
clus
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                2                76 
       TCGA-OR-A5J1        TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J4 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5J5        TCGA-OR-A5J6        TCGA-OR-A5J7        TCGA-OR-A5J8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5J9        TCGA-OR-A5JA        TCGA-OR-A5JB        TCGA-OR-A5JC 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JD        TCGA-OR-A5JE        TCGA-OR-A5JF        TCGA-OR-A5JG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JI        TCGA-OR-A5JJ        TCGA-OR-A5JK        TCGA-OR-A5JL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JM        TCGA-OR-A5JO        TCGA-OR-A5JP        TCGA-OR-A5JQ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JR        TCGA-OR-A5JS        TCGA-OR-A5JT        TCGA-OR-A5JV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JW        TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5JZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K0        TCGA-OR-A5K1        TCGA-OR-A5K2        TCGA-OR-A5K3 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K4        TCGA-OR-A5K5        TCGA-OR-A5K6        TCGA-OR-A5K8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5KO        TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5KW        TCGA-OR-A5KX        TCGA-OR-A5KY        TCGA-OR-A5KZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5L3        TCGA-OR-A5L4        TCGA-OR-A5L5        TCGA-OR-A5L6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5L8        TCGA-OR-A5L9        TCGA-OR-A5LA        TCGA-OR-A5LB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LC        TCGA-OR-A5LD        TCGA-OR-A5LE        TCGA-OR-A5LG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LH        TCGA-OR-A5LJ        TCGA-OR-A5LK        TCGA-OR-A5LL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LM        TCGA-OR-A5LN        TCGA-OR-A5LO        TCGA-OR-A5LP 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LR        TCGA-OR-A5LS        TCGA-OR-A5LT        TCGA-OU-A5PI 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-PA-A5YG        TCGA-PK-A5H9        TCGA-PK-A5HA        TCGA-PK-A5HB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED        2      0      0      0
  1P GAIN WILD-TYPE     22     13     17     23
D1V3, multiclass
[1] "Remove cluster labels:" "1P GAIN MUTATED"       
clus
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                2                75 
       TCGA-OR-A5J1        TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5J6        TCGA-OR-A5J7        TCGA-OR-A5J8        TCGA-OR-A5J9 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JA        TCGA-OR-A5JB        TCGA-OR-A5JC        TCGA-OR-A5JD 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JE        TCGA-OR-A5JF        TCGA-OR-A5JG        TCGA-OR-A5JI 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JJ        TCGA-OR-A5JK        TCGA-OR-A5JL        TCGA-OR-A5JM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JO        TCGA-OR-A5JP        TCGA-OR-A5JQ        TCGA-OR-A5JR 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JS        TCGA-OR-A5JT        TCGA-OR-A5JV        TCGA-OR-A5JW 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5JZ        TCGA-OR-A5K0 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K1        TCGA-OR-A5K2        TCGA-OR-A5K3        TCGA-OR-A5K4 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K5        TCGA-OR-A5K6        TCGA-OR-A5K8        TCGA-OR-A5KO 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV        TCGA-OR-A5KW 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5KX        TCGA-OR-A5KY        TCGA-OR-A5KZ        TCGA-OR-A5L3 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5L4        TCGA-OR-A5L5        TCGA-OR-A5L6        TCGA-OR-A5L8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5L9        TCGA-OR-A5LA        TCGA-OR-A5LB        TCGA-OR-A5LC 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LD        TCGA-OR-A5LE        TCGA-OR-A5LG        TCGA-OR-A5LH 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LJ        TCGA-OR-A5LK        TCGA-OR-A5LL        TCGA-OR-A5LM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LN        TCGA-OR-A5LO        TCGA-OR-A5LP        TCGA-OR-A5LR 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LS        TCGA-OR-A5LT        TCGA-OU-A5PI        TCGA-PA-A5YG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-PK-A5H9        TCGA-PK-A5HA        TCGA-PK-A5HB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        1      1      0
  1P GAIN WILD-TYPE     22     31     22
D1V4, multiclass
[1] "Remove cluster labels:" "1P GAIN MUTATED"       
clus
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                2                75 
       TCGA-OR-A5J1        TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5J6        TCGA-OR-A5J7        TCGA-OR-A5J8        TCGA-OR-A5J9 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JA        TCGA-OR-A5JB        TCGA-OR-A5JC        TCGA-OR-A5JD 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JE        TCGA-OR-A5JF        TCGA-OR-A5JG        TCGA-OR-A5JI 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JJ        TCGA-OR-A5JK        TCGA-OR-A5JL        TCGA-OR-A5JM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JO        TCGA-OR-A5JP        TCGA-OR-A5JQ        TCGA-OR-A5JR 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JS        TCGA-OR-A5JT        TCGA-OR-A5JV        TCGA-OR-A5JW 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5JZ        TCGA-OR-A5K0 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K1        TCGA-OR-A5K2        TCGA-OR-A5K3        TCGA-OR-A5K4 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K5        TCGA-OR-A5K6        TCGA-OR-A5K8        TCGA-OR-A5KO 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV        TCGA-OR-A5KW 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5KX        TCGA-OR-A5KY        TCGA-OR-A5KZ        TCGA-OR-A5L3 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5L4        TCGA-OR-A5L5        TCGA-OR-A5L6        TCGA-OR-A5L8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5L9        TCGA-OR-A5LA        TCGA-OR-A5LB        TCGA-OR-A5LC 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LD        TCGA-OR-A5LE        TCGA-OR-A5LG        TCGA-OR-A5LH 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LJ        TCGA-OR-A5LK        TCGA-OR-A5LL        TCGA-OR-A5LM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LN        TCGA-OR-A5LO        TCGA-OR-A5LP        TCGA-OR-A5LR 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LS        TCGA-OR-A5LT        TCGA-OU-A5PI        TCGA-PA-A5YG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-PK-A5H9        TCGA-PK-A5HA        TCGA-PK-A5HB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        1      1      0
  1P GAIN WILD-TYPE     35     15     26
D1V5, multiclass
[1] "Remove cluster labels:" "1P GAIN MUTATED"       
clus
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                2                76 
       TCGA-OR-A5J1        TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J4 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5J5        TCGA-OR-A5J6        TCGA-OR-A5J7        TCGA-OR-A5J8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5J9        TCGA-OR-A5JA        TCGA-OR-A5JB        TCGA-OR-A5JC 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JD        TCGA-OR-A5JE        TCGA-OR-A5JF        TCGA-OR-A5JG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JI        TCGA-OR-A5JJ        TCGA-OR-A5JK        TCGA-OR-A5JL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JM        TCGA-OR-A5JO        TCGA-OR-A5JP        TCGA-OR-A5JQ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JR        TCGA-OR-A5JS        TCGA-OR-A5JT        TCGA-OR-A5JV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JW        TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5JZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K0        TCGA-OR-A5K1        TCGA-OR-A5K2        TCGA-OR-A5K3 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K4        TCGA-OR-A5K5        TCGA-OR-A5K6        TCGA-OR-A5K8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5KO        TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5KW        TCGA-OR-A5KX        TCGA-OR-A5KY        TCGA-OR-A5KZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5L3        TCGA-OR-A5L4        TCGA-OR-A5L5        TCGA-OR-A5L6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5L8        TCGA-OR-A5L9        TCGA-OR-A5LA        TCGA-OR-A5LB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LC        TCGA-OR-A5LD        TCGA-OR-A5LE        TCGA-OR-A5LG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LH        TCGA-OR-A5LJ        TCGA-OR-A5LK        TCGA-OR-A5LL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LM        TCGA-OR-A5LN        TCGA-OR-A5LO        TCGA-OR-A5LP 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LR        TCGA-OR-A5LS        TCGA-OR-A5LT        TCGA-OU-A5PI 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-PA-A5YG        TCGA-PK-A5H9        TCGA-PK-A5HA        TCGA-PK-A5HB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        1      0      1
  1P GAIN WILD-TYPE     25     10     41
D1V6, multiclass
[1] "Remove cluster labels:" "1P GAIN MUTATED"       
clus
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                2                76 
       TCGA-OR-A5J1        TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J4 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5J5        TCGA-OR-A5J6        TCGA-OR-A5J7        TCGA-OR-A5J8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5J9        TCGA-OR-A5JA        TCGA-OR-A5JB        TCGA-OR-A5JC 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JD        TCGA-OR-A5JE        TCGA-OR-A5JF        TCGA-OR-A5JG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JI        TCGA-OR-A5JJ        TCGA-OR-A5JK        TCGA-OR-A5JL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JM        TCGA-OR-A5JO        TCGA-OR-A5JP        TCGA-OR-A5JQ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JR        TCGA-OR-A5JS        TCGA-OR-A5JT        TCGA-OR-A5JV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JW        TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5JZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K0        TCGA-OR-A5K1        TCGA-OR-A5K2        TCGA-OR-A5K3 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K4        TCGA-OR-A5K5        TCGA-OR-A5K6        TCGA-OR-A5K8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5KO        TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5KW        TCGA-OR-A5KX        TCGA-OR-A5KY        TCGA-OR-A5KZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5L3        TCGA-OR-A5L4        TCGA-OR-A5L5        TCGA-OR-A5L6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5L8        TCGA-OR-A5L9        TCGA-OR-A5LA        TCGA-OR-A5LB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LC        TCGA-OR-A5LD        TCGA-OR-A5LE        TCGA-OR-A5LG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LH        TCGA-OR-A5LJ        TCGA-OR-A5LK        TCGA-OR-A5LL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LM        TCGA-OR-A5LN        TCGA-OR-A5LO        TCGA-OR-A5LP 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LR        TCGA-OR-A5LS        TCGA-OR-A5LT        TCGA-OU-A5PI 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-PA-A5YG        TCGA-PK-A5H9        TCGA-PK-A5HA        TCGA-PK-A5HB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        1      1      0
  1P GAIN WILD-TYPE     36     17     23
D1V7, multiclass
[1] "Remove cluster labels:" "1P GAIN MUTATED"       
clus
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                2                76 
       TCGA-OR-A5J1        TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J4 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5J5        TCGA-OR-A5J6        TCGA-OR-A5J7        TCGA-OR-A5J8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5J9        TCGA-OR-A5JA        TCGA-OR-A5JB        TCGA-OR-A5JC 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JD        TCGA-OR-A5JE        TCGA-OR-A5JF        TCGA-OR-A5JG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JI        TCGA-OR-A5JJ        TCGA-OR-A5JK        TCGA-OR-A5JL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JM        TCGA-OR-A5JO        TCGA-OR-A5JP        TCGA-OR-A5JQ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JR        TCGA-OR-A5JS        TCGA-OR-A5JT        TCGA-OR-A5JV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JW        TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5JZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K0        TCGA-OR-A5K1        TCGA-OR-A5K2        TCGA-OR-A5K3 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K4        TCGA-OR-A5K5        TCGA-OR-A5K6        TCGA-OR-A5K8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5KO        TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5KW        TCGA-OR-A5KX        TCGA-OR-A5KY        TCGA-OR-A5KZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5L3        TCGA-OR-A5L4        TCGA-OR-A5L5        TCGA-OR-A5L6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5L8        TCGA-OR-A5L9        TCGA-OR-A5LA        TCGA-OR-A5LB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LC        TCGA-OR-A5LD        TCGA-OR-A5LE        TCGA-OR-A5LG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LH        TCGA-OR-A5LJ        TCGA-OR-A5LK        TCGA-OR-A5LL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LM        TCGA-OR-A5LN        TCGA-OR-A5LO        TCGA-OR-A5LP 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LR        TCGA-OR-A5LS        TCGA-OR-A5LT        TCGA-OU-A5PI 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-PA-A5YG        TCGA-PK-A5H9        TCGA-PK-A5HA        TCGA-PK-A5HB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        1      0      1
  1P GAIN WILD-TYPE     39     11     26
D1V8, multiclass
[1] "Remove cluster labels:" "1P GAIN MUTATED"       
clus
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                2                76 
       TCGA-OR-A5J1        TCGA-OR-A5J2        TCGA-OR-A5J3        TCGA-OR-A5J4 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5J5        TCGA-OR-A5J6        TCGA-OR-A5J7        TCGA-OR-A5J8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5J9        TCGA-OR-A5JA        TCGA-OR-A5JB        TCGA-OR-A5JC 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JD        TCGA-OR-A5JE        TCGA-OR-A5JF        TCGA-OR-A5JG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JI        TCGA-OR-A5JJ        TCGA-OR-A5JK        TCGA-OR-A5JL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JM        TCGA-OR-A5JO        TCGA-OR-A5JP        TCGA-OR-A5JQ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JR        TCGA-OR-A5JS        TCGA-OR-A5JT        TCGA-OR-A5JV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5JW        TCGA-OR-A5JX        TCGA-OR-A5JY        TCGA-OR-A5JZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K0        TCGA-OR-A5K1        TCGA-OR-A5K2        TCGA-OR-A5K3 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5K4        TCGA-OR-A5K5        TCGA-OR-A5K6        TCGA-OR-A5K8 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5KO        TCGA-OR-A5KT        TCGA-OR-A5KU        TCGA-OR-A5KV 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5KW        TCGA-OR-A5KX        TCGA-OR-A5KY        TCGA-OR-A5KZ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5L3        TCGA-OR-A5L4        TCGA-OR-A5L5        TCGA-OR-A5L6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5L8        TCGA-OR-A5L9        TCGA-OR-A5LA        TCGA-OR-A5LB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LC        TCGA-OR-A5LD        TCGA-OR-A5LE        TCGA-OR-A5LG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LH        TCGA-OR-A5LJ        TCGA-OR-A5LK        TCGA-OR-A5LL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LM        TCGA-OR-A5LN        TCGA-OR-A5LO        TCGA-OR-A5LP 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-OR-A5LR        TCGA-OR-A5LS        TCGA-OR-A5LT        TCGA-OU-A5PI 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-PA-A5YG        TCGA-PK-A5H9        TCGA-PK-A5HA        TCGA-PK-A5HB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q GAIN MUTATED        5      0      1      2      0
  1Q GAIN WILD-TYPE     27     24     14      8      9
D2V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q GAIN MUTATED        3      1      1      1      0
  1Q GAIN WILD-TYPE     15     10     19     17     11
D2V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED        4      2      0      0
  1Q GAIN WILD-TYPE     20     11     17     23
D2V3, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               4                20
  CLUS_2               2                11
  CLUS_3               0                17
  CLUS_4               0                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        4      1      1
  1Q GAIN WILD-TYPE     19     31     21
D2V4, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               4                19
  CLUS_2               1                31
  CLUS_3               1                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        3      3      0
  1Q GAIN WILD-TYPE     33     13     26
D2V5, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               3                33
  CLUS_2               3                13
  CLUS_3               0                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        2      0      4
  1Q GAIN WILD-TYPE     24     10     38
D2V6, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               2                24
  CLUS_2               0                10
  CLUS_3               4                38
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        4      2      0
  1Q GAIN WILD-TYPE     33     16     23
D2V7, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               4                33
  CLUS_2               2                16
  CLUS_3               0                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        4      0      2
  1Q GAIN WILD-TYPE     36     11     25
D2V8, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               4                36
  CLUS_2               0                11
  CLUS_3               2                25

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P GAIN MUTATED       12      0      1      0      0
  2P GAIN WILD-TYPE     20     24     14     10      9
D3V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P GAIN MUTATED        7      1      0      1      0
  2P GAIN WILD-TYPE     11     10     20     17     11
D3V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED        7      0      0      2
  2P GAIN WILD-TYPE     17     13     17     21
D3V3, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               7                17
  CLUS_2               0                13
  CLUS_3               0                17
  CLUS_4               2                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        8      1      0
  2P GAIN WILD-TYPE     15     31     22
D3V4, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               8                15
  CLUS_2               1                31
  CLUS_3               0                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        6      2      1
  2P GAIN WILD-TYPE     30     14     25
D3V5, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               6                30
  CLUS_2               2                14
  CLUS_3               1                25
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        1      0      8
  2P GAIN WILD-TYPE     25     10     34
D3V6, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               1                25
  CLUS_2               0                10
  CLUS_3               8                34
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        7      2      0
  2P GAIN WILD-TYPE     30     16     23
D3V7, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               7                30
  CLUS_2               2                16
  CLUS_3               0                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        8      0      1
  2P GAIN WILD-TYPE     32     11     26
D3V8, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               8                32
  CLUS_2               0                11
  CLUS_3               1                26

Clustering(4) Variable = 2Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q GAIN MUTATED       10      0      2      0      0
  2Q GAIN WILD-TYPE     22     24     13     10      9
D4V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q GAIN MUTATED        6      0      0      1      0
  2Q GAIN WILD-TYPE     12     11     20     17     11
D4V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED        6      0      0      1
  2Q GAIN WILD-TYPE     18     13     17     22
D4V3, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               6                18
  CLUS_2               0                13
  CLUS_3               0                17
  CLUS_4               1                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        6      1      0
  2Q GAIN WILD-TYPE     17     31     22
D4V4, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               6                17
  CLUS_2               1                31
  CLUS_3               0                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        6      1      0
  2Q GAIN WILD-TYPE     30     15     26
D4V5, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               6                30
  CLUS_2               1                15
  CLUS_3               0                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        0      0      7
  2Q GAIN WILD-TYPE     26     10     35
D4V6, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               0                26
  CLUS_2               0                10
  CLUS_3               7                35
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        7      0      0
  2Q GAIN WILD-TYPE     30     18     23
D4V7, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               7                30
  CLUS_2               0                18
  CLUS_3               0                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        7      0      0
  2Q GAIN WILD-TYPE     33     11     27
D4V8, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               7                33
  CLUS_2               0                11
  CLUS_3               0                27

Clustering(5) Variable = 3P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P GAIN MUTATED        5      2      2      0      4
  3P GAIN WILD-TYPE     27     22     13     10      5
D5V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P GAIN MUTATED        0      3      1      4      2
  3P GAIN WILD-TYPE     18      8     19     14      9
D5V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED        1      3      2      4
  3P GAIN WILD-TYPE     23     10     15     19
D5V3, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               1                23
  CLUS_2               3                10
  CLUS_3               2                15
  CLUS_4               4                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        1      6      3
  3P GAIN WILD-TYPE     22     26     19
D5V4, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               1                22
  CLUS_2               6                26
  CLUS_3               3                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        3      2      5
  3P GAIN WILD-TYPE     33     14     21
D5V5, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               3                33
  CLUS_2               2                14
  CLUS_3               5                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        6      1      3
  3P GAIN WILD-TYPE     20      9     39
D5V6, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               6                20
  CLUS_2               1                 9
  CLUS_3               3                39
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        3      2      5
  3P GAIN WILD-TYPE     34     16     18
D5V7, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               3                34
  CLUS_2               2                16
  CLUS_3               5                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        3      1      6
  3P GAIN WILD-TYPE     37     10     21
D5V8, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               3                37
  CLUS_2               1                10
  CLUS_3               6                21

Clustering(6) Variable = 3Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q GAIN MUTATED        5      2      4      0      4
  3Q GAIN WILD-TYPE     27     22     11     10      5
D6V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q GAIN MUTATED        0      4      2      4      2
  3Q GAIN WILD-TYPE     18      7     18     14      9
D6V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED        1      5      2      4
  3Q GAIN WILD-TYPE     23      8     15     19
D6V3, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               1                23
  CLUS_2               5                 8
  CLUS_3               2                15
  CLUS_4               4                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        2      6      4
  3Q GAIN WILD-TYPE     21     26     18
D6V4, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               2                21
  CLUS_2               6                26
  CLUS_3               4                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        4      3      5
  3Q GAIN WILD-TYPE     32     13     21
D6V5, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               4                32
  CLUS_2               3                13
  CLUS_3               5                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        6      1      5
  3Q GAIN WILD-TYPE     20      9     37
D6V6, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               6                20
  CLUS_2               1                 9
  CLUS_3               5                37
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        4      3      5
  3Q GAIN WILD-TYPE     33     15     18
D6V7, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               4                33
  CLUS_2               3                15
  CLUS_3               5                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        5      1      6
  3Q GAIN WILD-TYPE     35     10     21
D6V8, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               5                35
  CLUS_2               1                10
  CLUS_3               6                21

Clustering(7) Variable = 4P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P GAIN MUTATED        3     13     10      4      7
  4P GAIN WILD-TYPE     29     11      5      6      2
D7V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P GAIN MUTATED        3      4     13      6      5
  4P GAIN WILD-TYPE     15      7      7     12      6
D7V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        1      8     11     10
  4P GAIN WILD-TYPE     23      5      6     13
D7V3, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               1                23
  CLUS_2               8                 5
  CLUS_3              11                 6
  CLUS_4              10                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        2     14     14
  4P GAIN WILD-TYPE     21     18      8
D7V4, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2                21
  CLUS_2              14                18
  CLUS_3              14                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED       14      4     13
  4P GAIN WILD-TYPE     22     12     13
D7V5, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              14                22
  CLUS_2               4                12
  CLUS_3              13                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED       10      6     15
  4P GAIN WILD-TYPE     16      4     27
D7V6, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              10                16
  CLUS_2               6                 4
  CLUS_3              15                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED       14      6     11
  4P GAIN WILD-TYPE     23     12     12
D7V7, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              14                23
  CLUS_2               6                12
  CLUS_3              11                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED       15      6     10
  4P GAIN WILD-TYPE     25      5     17
D7V8, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              15                25
  CLUS_2               6                 5
  CLUS_3              10                17

Clustering(8) Variable = 4Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q GAIN MUTATED        2     12      9      4      6
  4Q GAIN WILD-TYPE     30     12      6      6      3
D8V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q GAIN MUTATED        2      4     12      6      4
  4Q GAIN WILD-TYPE     16      7      8     12      7
D8V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED        0      8      9     10
  4Q GAIN WILD-TYPE     24      5      8     13
D8V3, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               0                24
  CLUS_2               8                 5
  CLUS_3               9                 8
  CLUS_4              10                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        1     12     14
  4Q GAIN WILD-TYPE     22     20      8
D8V4, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               1                22
  CLUS_2              12                20
  CLUS_3              14                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED       13      4     11
  4Q GAIN WILD-TYPE     23     12     15
D8V5, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              13                23
  CLUS_2               4                12
  CLUS_3              11                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        9      5     14
  4Q GAIN WILD-TYPE     17      5     28
D8V6, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               9                17
  CLUS_2               5                 5
  CLUS_3              14                28
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED       13      5     10
  4Q GAIN WILD-TYPE     24     13     13
D8V7, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              13                24
  CLUS_2               5                13
  CLUS_3              10                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED       14      5      9
  4Q GAIN WILD-TYPE     26      6     18
D8V8, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              14                26
  CLUS_2               5                 6
  CLUS_3               9                18

Clustering(9) Variable = 5P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P GAIN MUTATED       10     22     13      4      8
  5P GAIN WILD-TYPE     22      2      2      6      1
D9V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P GAIN MUTATED        7      5     15     14      9
  5P GAIN WILD-TYPE     11      6      5      4      2
D9V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED        7     10     14     18
  5P GAIN WILD-TYPE     17      3      3      5
D9V3, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               7                17
  CLUS_2              10                 3
  CLUS_3              14                 3
  CLUS_4              18                 5
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        6     26     17
  5P GAIN WILD-TYPE     17      6      5
D9V4, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               6                17
  CLUS_2              26                 6
  CLUS_3              17                 5
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       21      9     20
  5P GAIN WILD-TYPE     15      7      6
D9V5, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              21                15
  CLUS_2               9                 7
  CLUS_3              20                 6
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       19      7     24
  5P GAIN WILD-TYPE      7      3     18
D9V6, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              19                 7
  CLUS_2               7                 3
  CLUS_3              24                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       22      9     19
  5P GAIN WILD-TYPE     15      9      4
D9V7, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              22                15
  CLUS_2               9                 9
  CLUS_3              19                 4
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       23      7     20
  5P GAIN WILD-TYPE     17      4      7
D9V8, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              23                17
  CLUS_2               7                 4
  CLUS_3              20                 7

Clustering(10) Variable = 5Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q GAIN MUTATED        9     19     13      4      8
  5Q GAIN WILD-TYPE     23      5      2      6      1
D10V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q GAIN MUTATED        7      4     17     11      9
  5Q GAIN WILD-TYPE     11      7      3      7      2
D10V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED        7     10     15     15
  5Q GAIN WILD-TYPE     17      3      2      8
D10V3, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               7                17
  CLUS_2              10                 3
  CLUS_3              15                 2
  CLUS_4              15                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        5     23     19
  5Q GAIN WILD-TYPE     18      9      3
D10V4, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               5                18
  CLUS_2              23                 9
  CLUS_3              19                 3
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       20      9     19
  5Q GAIN WILD-TYPE     16      7      7
D10V5, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              20                16
  CLUS_2               9                 7
  CLUS_3              19                 7
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       19      7     22
  5Q GAIN WILD-TYPE      7      3     20
D10V6, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              19                 7
  CLUS_2               7                 3
  CLUS_3              22                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       21     10     17
  5Q GAIN WILD-TYPE     16      8      6
D10V7, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              21                16
  CLUS_2              10                 8
  CLUS_3              17                 6
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       21      7     20
  5Q GAIN WILD-TYPE     19      4      7
D10V8, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              21                19
  CLUS_2               7                 4
  CLUS_3              20                 7

Clustering(11) Variable = 6P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P GAIN MUTATED        6      2      2      5      3
  6P GAIN WILD-TYPE     26     22     13      5      6
D11V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P GAIN MUTATED        5      1      3      5      2
  6P GAIN WILD-TYPE     13     10     17     13      9
D11V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED        6      0      6      3
  6P GAIN WILD-TYPE     18     13     11     20
D11V3, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               6                18
  CLUS_2               0                13
  CLUS_3               6                11
  CLUS_4               3                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        4      7      4
  6P GAIN WILD-TYPE     19     25     18
D11V4, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               4                19
  CLUS_2               7                25
  CLUS_3               4                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       11      2      3
  6P GAIN WILD-TYPE     25     14     23
D11V5, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              11                25
  CLUS_2               2                14
  CLUS_3               3                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        2      2     12
  6P GAIN WILD-TYPE     24      8     30
D11V6, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               2                24
  CLUS_2               2                 8
  CLUS_3              12                30
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       11      2      3
  6P GAIN WILD-TYPE     26     16     20
D11V7, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              11                26
  CLUS_2               2                16
  CLUS_3               3                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       11      2      3
  6P GAIN WILD-TYPE     29      9     24
D11V8, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              11                29
  CLUS_2               2                 9
  CLUS_3               3                24

Clustering(12) Variable = 6Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q GAIN MUTATED        6      2      0      6      2
  6Q GAIN WILD-TYPE     26     22     15      4      7
D12V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q GAIN MUTATED        3      0      4      5      2
  6Q GAIN WILD-TYPE     15     11     16     13      9
D12V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED        5      0      5      4
  6Q GAIN WILD-TYPE     19     13     12     19
D12V3, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               5                19
  CLUS_2               0                13
  CLUS_3               5                12
  CLUS_4               4                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        3      8      3
  6Q GAIN WILD-TYPE     20     24     19
D12V4, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               3                20
  CLUS_2               8                24
  CLUS_3               3                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        9      1      4
  6Q GAIN WILD-TYPE     27     15     22
D12V5, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               9                27
  CLUS_2               1                15
  CLUS_3               4                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        2      2     10
  6Q GAIN WILD-TYPE     24      8     32
D12V6, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               2                24
  CLUS_2               2                 8
  CLUS_3              10                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        9      1      4
  6Q GAIN WILD-TYPE     28     17     19
D12V7, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               9                28
  CLUS_2               1                17
  CLUS_3               4                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        9      2      3
  6Q GAIN WILD-TYPE     31      9     24
D12V8, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               9                31
  CLUS_2               2                 9
  CLUS_3               3                24

Clustering(13) Variable = 7P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P GAIN MUTATED        9     18     12      3      6
  7P GAIN WILD-TYPE     23      6      3      7      3
D13V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P GAIN MUTATED        5      6     14     10      7
  7P GAIN WILD-TYPE     13      5      6      8      4
D13V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED        6     12     13     11
  7P GAIN WILD-TYPE     18      1      4     12
D13V3, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               6                18
  CLUS_2              12                 1
  CLUS_3              13                 4
  CLUS_4              11                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED        7     17     18
  7P GAIN WILD-TYPE     16     15      4
D13V4, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               7                16
  CLUS_2              17                15
  CLUS_3              18                 4
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       20      9     13
  7P GAIN WILD-TYPE     16      7     13
D13V5, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              20                16
  CLUS_2               9                 7
  CLUS_3              13                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       15      4     23
  7P GAIN WILD-TYPE     11      6     19
D13V6, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              15                11
  CLUS_2               4                 6
  CLUS_3              23                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       21      9     12
  7P GAIN WILD-TYPE     16      9     11
D13V7, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              21                16
  CLUS_2               9                 9
  CLUS_3              12                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       22      4     16
  7P GAIN WILD-TYPE     18      7     11
D13V8, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              22                18
  CLUS_2               4                 7
  CLUS_3              16                11

Clustering(14) Variable = 7Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q GAIN MUTATED        8     18     13      3      6
  7Q GAIN WILD-TYPE     24      6      2      7      3
D14V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q GAIN MUTATED        5      6     14     10      7
  7Q GAIN WILD-TYPE     13      5      6      8      4
D14V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED        5     13     13     11
  7Q GAIN WILD-TYPE     19      0      4     12
D14V3, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               5                19
  CLUS_2              13                 0
  CLUS_3              13                 4
  CLUS_4              11                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED        6     17     19
  7Q GAIN WILD-TYPE     17     15      3
D14V4, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               6                17
  CLUS_2              17                15
  CLUS_3              19                 3
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       20      9     13
  7Q GAIN WILD-TYPE     16      7     13
D14V5, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              20                16
  CLUS_2               9                 7
  CLUS_3              13                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       16      4     22
  7Q GAIN WILD-TYPE     10      6     20
D14V6, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              16                10
  CLUS_2               4                 6
  CLUS_3              22                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       20     10     12
  7Q GAIN WILD-TYPE     17      8     11
D14V7, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              20                17
  CLUS_2              10                 8
  CLUS_3              12                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       21      4     17
  7Q GAIN WILD-TYPE     19      7     10
D14V8, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              21                19
  CLUS_2               4                 7
  CLUS_3              17                10

Clustering(15) Variable = 8P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P GAIN MUTATED        5     16      4      3      4
  8P GAIN WILD-TYPE     27      8     11      7      5
D15V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P GAIN MUTATED        7      2      4      9      6
  8P GAIN WILD-TYPE     11      9     16      9      5
D15V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED        5      4      6     12
  8P GAIN WILD-TYPE     19      9     11     11
D15V3, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               5                19
  CLUS_2               4                 9
  CLUS_3               6                11
  CLUS_4              12                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        5     14      8
  8P GAIN WILD-TYPE     18     18     14
D15V4, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               5                18
  CLUS_2              14                18
  CLUS_3               8                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       12      3     13
  8P GAIN WILD-TYPE     24     13     13
D15V5, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              12                24
  CLUS_2               3                13
  CLUS_3              13                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       11      5     12
  8P GAIN WILD-TYPE     15      5     30
D15V6, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              11                15
  CLUS_2               5                 5
  CLUS_3              12                30
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       12      3     13
  8P GAIN WILD-TYPE     25     15     10
D15V7, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              12                25
  CLUS_2               3                15
  CLUS_3              13                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       12      5     11
  8P GAIN WILD-TYPE     28      6     16
D15V8, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              12                28
  CLUS_2               5                 6
  CLUS_3              11                16

Clustering(16) Variable = 8Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q GAIN MUTATED        9     17      5      3      4
  8Q GAIN WILD-TYPE     23      7     10      7      5
D16V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q GAIN MUTATED        9      3      5      9      6
  8Q GAIN WILD-TYPE      9      8     15      9      5
D16V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED        7      6      6     12
  8Q GAIN WILD-TYPE     17      7     11     11
D16V3, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               7                17
  CLUS_2               6                 7
  CLUS_3               6                11
  CLUS_4              12                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        7     14     10
  8Q GAIN WILD-TYPE     16     18     12
D16V4, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               7                16
  CLUS_2              14                18
  CLUS_3              10                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       14      5     13
  8Q GAIN WILD-TYPE     22     11     13
D16V5, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              14                22
  CLUS_2               5                11
  CLUS_3              13                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       12      5     15
  8Q GAIN WILD-TYPE     14      5     27
D16V6, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              12                14
  CLUS_2               5                 5
  CLUS_3              15                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       15      4     13
  8Q GAIN WILD-TYPE     22     14     10
D16V7, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              15                22
  CLUS_2               4                14
  CLUS_3              13                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       15      5     12
  8Q GAIN WILD-TYPE     25      6     15
D16V8, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              15                25
  CLUS_2               5                 6
  CLUS_3              12                15

Clustering(17) Variable = 9P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P GAIN MUTATED        2      3     10      1      4
  9P GAIN WILD-TYPE     30     21      5      9      5
D17V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P GAIN MUTATED        2      5      8      0      1
  9P GAIN WILD-TYPE     16      6     12     18     10
D17V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED        1      6      5      3
  9P GAIN WILD-TYPE     23      7     12     20
D17V3, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               1                23
  CLUS_2               6                 7
  CLUS_3               5                12
  CLUS_4               3                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        3      2     10
  9P GAIN WILD-TYPE     20     30     12
D17V4, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               3                20
  CLUS_2               2                30
  CLUS_3              10                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        9      4      3
  9P GAIN WILD-TYPE     27     12     23
D17V5, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               9                27
  CLUS_2               4                12
  CLUS_3               3                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        4      1     11
  9P GAIN WILD-TYPE     22      9     31
D17V6, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               4                22
  CLUS_2               1                 9
  CLUS_3              11                31
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        9      5      2
  9P GAIN WILD-TYPE     28     13     21
D17V7, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               9                28
  CLUS_2               5                13
  CLUS_3               2                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED       11      1      4
  9P GAIN WILD-TYPE     29     10     23
D17V8, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              11                29
  CLUS_2               1                10
  CLUS_3               4                23

Clustering(18) Variable = 9Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q GAIN MUTATED        7      3     12      3      4
  9Q GAIN WILD-TYPE     25     21      3      7      5
D18V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q GAIN MUTATED        8      5      9      0      1
  9Q GAIN WILD-TYPE     10      6     11     18     10
D18V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED        6      8      5      3
  9Q GAIN WILD-TYPE     18      5     12     20
D18V3, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               6                18
  CLUS_2               8                 5
  CLUS_3               5                12
  CLUS_4               3                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        8      2     12
  9Q GAIN WILD-TYPE     15     30     10
D18V4, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               8                15
  CLUS_2               2                30
  CLUS_3              12                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       13      7      3
  9Q GAIN WILD-TYPE     23      9     23
D18V5, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              13                23
  CLUS_2               7                 9
  CLUS_3               3                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        7      1     15
  9Q GAIN WILD-TYPE     19      9     27
D18V6, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               7                19
  CLUS_2               1                 9
  CLUS_3              15                27
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       13      8      2
  9Q GAIN WILD-TYPE     24     10     21
D18V7, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              13                24
  CLUS_2               8                10
  CLUS_3               2                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       15      1      7
  9Q GAIN WILD-TYPE     25     10     20
D18V8, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              15                25
  CLUS_2               1                10
  CLUS_3               7                20

Clustering(19) Variable = 10P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P GAIN MUTATED        8      3     11      1      2
  10P GAIN WILD-TYPE     24     21      4      9      7
D19V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P GAIN MUTATED        6      5      9      2      1
  10P GAIN WILD-TYPE     12      6     11     16     10
D19V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        6     11      4      2
  10P GAIN WILD-TYPE     18      2     13     21
D19V3, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                6                 18
  CLUS_2               11                  2
  CLUS_3                4                 13
  CLUS_4                2                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        7      3     13
  10P GAIN WILD-TYPE     16     29      9
D19V4, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                7                 16
  CLUS_2                3                 29
  CLUS_3               13                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED       13      7      3
  10P GAIN WILD-TYPE     23      9     23
D19V5, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               13                 23
  CLUS_2                7                  9
  CLUS_3                3                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        6      3     14
  10P GAIN WILD-TYPE     20      7     28
D19V6, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                6                 20
  CLUS_2                3                  7
  CLUS_3               14                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED       13      7      3
  10P GAIN WILD-TYPE     24     11     20
D19V7, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               13                 24
  CLUS_2                7                 11
  CLUS_3                3                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED       14      3      6
  10P GAIN WILD-TYPE     26      8     21
D19V8, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               14                 26
  CLUS_2                3                  8
  CLUS_3                6                 21

Clustering(20) Variable = 10Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q GAIN MUTATED       10      3     11      1      1
  10Q GAIN WILD-TYPE     22     21      4      9      8
D20V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q GAIN MUTATED        7      4      9      2      1
  10Q GAIN WILD-TYPE     11      7     11     16     10
D20V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        7     11      3      2
  10Q GAIN WILD-TYPE     17      2     14     21
D20V3, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                7                 17
  CLUS_2               11                  2
  CLUS_3                3                 14
  CLUS_4                2                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        8      3     12
  10Q GAIN WILD-TYPE     15     29     10
D20V4, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                8                 15
  CLUS_2                3                 29
  CLUS_3               12                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED       12      8      3
  10Q GAIN WILD-TYPE     24      8     23
D20V5, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               12                 24
  CLUS_2                8                  8
  CLUS_3                3                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        7      3     13
  10Q GAIN WILD-TYPE     19      7     29
D20V6, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                7                 19
  CLUS_2                3                  7
  CLUS_3               13                 29
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED       12      8      3
  10Q GAIN WILD-TYPE     25     10     20
D20V7, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               12                 25
  CLUS_2                8                 10
  CLUS_3                3                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED       13      3      7
  10Q GAIN WILD-TYPE     27      8     20
D20V8, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               13                 27
  CLUS_2                3                  8
  CLUS_3                7                 20

Clustering(21) Variable = 11P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P GAIN MUTATED        5      0      0      0      0
  11P GAIN WILD-TYPE     27     24     15     10      9
D21V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P GAIN MUTATED        1      0      0      1      0
  11P GAIN WILD-TYPE     17     11     20     17     11
D21V2, multiclass
[1] "Remove cluster labels:" "11P GAIN MUTATED"      
clus
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JK         TCGA-OR-A5JL         TCGA-OR-A5JM 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JO         TCGA-OR-A5JP         TCGA-OR-A5JQ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JS         TCGA-OR-A5JT 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JV         TCGA-OR-A5JW         TCGA-OR-A5JX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JY         TCGA-OR-A5JZ         TCGA-OR-A5K0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K1         TCGA-OR-A5K2         TCGA-OR-A5K3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K8         TCGA-OR-A5K9         TCGA-OR-A5KO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KT         TCGA-OR-A5KU         TCGA-OR-A5KV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KW         TCGA-OR-A5KX         TCGA-OR-A5KY 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5L3         TCGA-OR-A5L4 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5L5         TCGA-OR-A5L6         TCGA-OR-A5L8 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5L9         TCGA-OR-A5LA         TCGA-OR-A5LB 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LC         TCGA-OR-A5LE         TCGA-OR-A5LG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LH         TCGA-OR-A5LJ         TCGA-OR-A5LK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LL         TCGA-OR-A5LM         TCGA-OR-A5LN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LO         TCGA-OR-A5LP         TCGA-OR-A5LR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LS         TCGA-OR-A5LT         TCGA-OU-A5PI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"11P GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        2      0      0      0
  11P GAIN WILD-TYPE     22     13     17     23
D21V3, multiclass
[1] "Remove cluster labels:" "11P GAIN MUTATED"      
clus
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 2                 75 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5J5         TCGA-OR-A5J6         TCGA-OR-A5J7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5J8         TCGA-OR-A5J9         TCGA-OR-A5JA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JB         TCGA-OR-A5JC         TCGA-OR-A5JD 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JE         TCGA-OR-A5JF         TCGA-OR-A5JG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JI         TCGA-OR-A5JJ         TCGA-OR-A5JK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JM         TCGA-OR-A5JO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JZ         TCGA-OR-A5K0         TCGA-OR-A5K1 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K2         TCGA-OR-A5K3         TCGA-OR-A5K4 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5L3         TCGA-OR-A5L4         TCGA-OR-A5L5 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5L6         TCGA-OR-A5L8         TCGA-OR-A5L9 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LH 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-PA-A5YG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-PK-A5H9         TCGA-PK-A5HA         TCGA-PK-A5HB 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        1      1      0
  11P GAIN WILD-TYPE     22     31     22
D21V4, multiclass
[1] "Remove cluster labels:" "11P GAIN MUTATED"      
clus
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 2                 75 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5J5         TCGA-OR-A5J6         TCGA-OR-A5J7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5J8         TCGA-OR-A5J9         TCGA-OR-A5JA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JB         TCGA-OR-A5JC         TCGA-OR-A5JD 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JE         TCGA-OR-A5JF         TCGA-OR-A5JG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JI         TCGA-OR-A5JJ         TCGA-OR-A5JK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JM         TCGA-OR-A5JO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JZ         TCGA-OR-A5K0         TCGA-OR-A5K1 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K2         TCGA-OR-A5K3         TCGA-OR-A5K4 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5L3         TCGA-OR-A5L4         TCGA-OR-A5L5 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5L6         TCGA-OR-A5L8         TCGA-OR-A5L9 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LH 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-PA-A5YG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-PK-A5H9         TCGA-PK-A5HA         TCGA-PK-A5HB 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        1      1      0
  11P GAIN WILD-TYPE     35     15     26
D21V5, multiclass
[1] "Remove cluster labels:" "11P GAIN MUTATED"      
clus
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JK         TCGA-OR-A5JL         TCGA-OR-A5JM 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JO         TCGA-OR-A5JP         TCGA-OR-A5JQ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JS         TCGA-OR-A5JT 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JV         TCGA-OR-A5JW         TCGA-OR-A5JX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JY         TCGA-OR-A5JZ         TCGA-OR-A5K0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K1         TCGA-OR-A5K2         TCGA-OR-A5K3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K8         TCGA-OR-A5K9         TCGA-OR-A5KO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KT         TCGA-OR-A5KU         TCGA-OR-A5KV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KW         TCGA-OR-A5KX         TCGA-OR-A5KY 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5L3         TCGA-OR-A5L4 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5L5         TCGA-OR-A5L6         TCGA-OR-A5L8 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5L9         TCGA-OR-A5LA         TCGA-OR-A5LB 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LC         TCGA-OR-A5LE         TCGA-OR-A5LG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LH         TCGA-OR-A5LJ         TCGA-OR-A5LK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LL         TCGA-OR-A5LM         TCGA-OR-A5LN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LO         TCGA-OR-A5LP         TCGA-OR-A5LR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LS         TCGA-OR-A5LT         TCGA-OU-A5PI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"11P GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        1      0      1
  11P GAIN WILD-TYPE     25     10     41
D21V6, multiclass
[1] "Remove cluster labels:" "11P GAIN MUTATED"      
clus
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JK         TCGA-OR-A5JL         TCGA-OR-A5JM 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JO         TCGA-OR-A5JP         TCGA-OR-A5JQ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JS         TCGA-OR-A5JT 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JV         TCGA-OR-A5JW         TCGA-OR-A5JX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JY         TCGA-OR-A5JZ         TCGA-OR-A5K0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K1         TCGA-OR-A5K2         TCGA-OR-A5K3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K8         TCGA-OR-A5K9         TCGA-OR-A5KO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KT         TCGA-OR-A5KU         TCGA-OR-A5KV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KW         TCGA-OR-A5KX         TCGA-OR-A5KY 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5L3         TCGA-OR-A5L4 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5L5         TCGA-OR-A5L6         TCGA-OR-A5L8 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5L9         TCGA-OR-A5LA         TCGA-OR-A5LB 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LC         TCGA-OR-A5LE         TCGA-OR-A5LG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LH         TCGA-OR-A5LJ         TCGA-OR-A5LK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LL         TCGA-OR-A5LM         TCGA-OR-A5LN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LO         TCGA-OR-A5LP         TCGA-OR-A5LR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LS         TCGA-OR-A5LT         TCGA-OU-A5PI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"11P GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        1      1      0
  11P GAIN WILD-TYPE     36     17     23
D21V7, multiclass
[1] "Remove cluster labels:" "11P GAIN MUTATED"      
clus
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JK         TCGA-OR-A5JL         TCGA-OR-A5JM 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JO         TCGA-OR-A5JP         TCGA-OR-A5JQ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JS         TCGA-OR-A5JT 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JV         TCGA-OR-A5JW         TCGA-OR-A5JX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JY         TCGA-OR-A5JZ         TCGA-OR-A5K0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K1         TCGA-OR-A5K2         TCGA-OR-A5K3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K8         TCGA-OR-A5K9         TCGA-OR-A5KO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KT         TCGA-OR-A5KU         TCGA-OR-A5KV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KW         TCGA-OR-A5KX         TCGA-OR-A5KY 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5L3         TCGA-OR-A5L4 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5L5         TCGA-OR-A5L6         TCGA-OR-A5L8 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5L9         TCGA-OR-A5LA         TCGA-OR-A5LB 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LC         TCGA-OR-A5LE         TCGA-OR-A5LG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LH         TCGA-OR-A5LJ         TCGA-OR-A5LK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LL         TCGA-OR-A5LM         TCGA-OR-A5LN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LO         TCGA-OR-A5LP         TCGA-OR-A5LR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LS         TCGA-OR-A5LT         TCGA-OU-A5PI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"11P GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        1      0      1
  11P GAIN WILD-TYPE     39     11     26
D21V8, multiclass
[1] "Remove cluster labels:" "11P GAIN MUTATED"      
clus
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JK         TCGA-OR-A5JL         TCGA-OR-A5JM 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JO         TCGA-OR-A5JP         TCGA-OR-A5JQ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JS         TCGA-OR-A5JT 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JV         TCGA-OR-A5JW         TCGA-OR-A5JX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5JY         TCGA-OR-A5JZ         TCGA-OR-A5K0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K1         TCGA-OR-A5K2         TCGA-OR-A5K3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5K8         TCGA-OR-A5K9         TCGA-OR-A5KO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KT         TCGA-OR-A5KU         TCGA-OR-A5KV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KW         TCGA-OR-A5KX         TCGA-OR-A5KY 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5L3         TCGA-OR-A5L4 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5L5         TCGA-OR-A5L6         TCGA-OR-A5L8 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5L9         TCGA-OR-A5LA         TCGA-OR-A5LB 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LC         TCGA-OR-A5LE         TCGA-OR-A5LG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LH         TCGA-OR-A5LJ         TCGA-OR-A5LK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LL         TCGA-OR-A5LM         TCGA-OR-A5LN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LO         TCGA-OR-A5LP         TCGA-OR-A5LR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-OR-A5LS         TCGA-OR-A5LT         TCGA-OU-A5PI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"11P GAIN WILD-TYPE" 

Clustering(22) Variable = 11Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q GAIN MUTATED        5      0      1      0      0
  11Q GAIN WILD-TYPE     27     24     14     10      9
D22V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q GAIN MUTATED        3      0      0      1      0
  11Q GAIN WILD-TYPE     15     11     20     17     11
D22V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        4      0      0      0
  11Q GAIN WILD-TYPE     20     13     17     23
D22V3, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                0                 13
  CLUS_3                0                 17
  CLUS_4                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        3      1      0
  11Q GAIN WILD-TYPE     20     31     22
D22V4, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                3                 20
  CLUS_2                1                 31
  CLUS_3                0                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        2      2      0
  11Q GAIN WILD-TYPE     34     14     26
D22V5, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                2                 34
  CLUS_2                2                 14
  CLUS_3                0                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        1      0      3
  11Q GAIN WILD-TYPE     25     10     39
D22V6, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                0                 10
  CLUS_3                3                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        3      1      0
  11Q GAIN WILD-TYPE     34     17     23
D22V7, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                3                 34
  CLUS_2                1                 17
  CLUS_3                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        3      0      1
  11Q GAIN WILD-TYPE     37     11     26
D22V8, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                3                 37
  CLUS_2                0                 11
  CLUS_3                1                 26

Clustering(23) Variable = 12P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P GAIN MUTATED       14     24     14      5      7
  12P GAIN WILD-TYPE     18      0      1      5      2
D23V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P GAIN MUTATED       10      6     17     13      9
  12P GAIN WILD-TYPE      8      5      3      5      2
D23V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED        9     13     14     18
  12P GAIN WILD-TYPE     15      0      3      5
D23V3, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                9                 15
  CLUS_2               13                  0
  CLUS_3               14                  3
  CLUS_4               18                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       10     25     19
  12P GAIN WILD-TYPE     13      7      3
D23V4, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               10                 13
  CLUS_2               25                  7
  CLUS_3               19                  3
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       25      9     21
  12P GAIN WILD-TYPE     11      7      5
D23V5, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               25                 11
  CLUS_2                9                  7
  CLUS_3               21                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       20      8     27
  12P GAIN WILD-TYPE      6      2     15
D23V6, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               20                  6
  CLUS_2                8                  2
  CLUS_3               27                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       25     10     20
  12P GAIN WILD-TYPE     12      8      3
D23V7, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               25                 12
  CLUS_2               10                  8
  CLUS_3               20                  3
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       26      8     21
  12P GAIN WILD-TYPE     14      3      6
D23V8, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               26                 14
  CLUS_2                8                  3
  CLUS_3               21                  6

Clustering(24) Variable = 12Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q GAIN MUTATED       14     24     15      4      7
  12Q GAIN WILD-TYPE     18      0      0      6      2
D24V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q GAIN MUTATED       11      6     17     13      9
  12Q GAIN WILD-TYPE      7      5      3      5      2
D24V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED       10     13     14     18
  12Q GAIN WILD-TYPE     14      0      3      5
D24V3, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               10                 14
  CLUS_2               13                  0
  CLUS_3               14                  3
  CLUS_4               18                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       11     25     19
  12Q GAIN WILD-TYPE     12      7      3
D24V4, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               11                 12
  CLUS_2               25                  7
  CLUS_3               19                  3
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       26      9     21
  12Q GAIN WILD-TYPE     10      7      5
D24V5, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               26                 10
  CLUS_2                9                  7
  CLUS_3               21                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       19      8     29
  12Q GAIN WILD-TYPE      7      2     13
D24V6, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               19                  7
  CLUS_2                8                  2
  CLUS_3               29                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       27      9     20
  12Q GAIN WILD-TYPE     10      9      3
D24V7, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               27                 10
  CLUS_2                9                  9
  CLUS_3               20                  3
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       28      8     20
  12Q GAIN WILD-TYPE     12      3      7
D24V8, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               28                 12
  CLUS_2                8                  3
  CLUS_3               20                  7

Clustering(25) Variable = 13Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q GAIN MUTATED        2      2      1      1      0
  13Q GAIN WILD-TYPE     30     22     14      9      9
D25V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q GAIN MUTATED        1      2      2      0      1
  13Q GAIN WILD-TYPE     17      9     18     18     10
D25V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        1      1      4      0
  13Q GAIN WILD-TYPE     23     12     13     23
D25V3, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                1                 23
  CLUS_2                1                 12
  CLUS_3                4                 13
  CLUS_4                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        2      1      3
  13Q GAIN WILD-TYPE     21     31     19
D25V4, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                2                 21
  CLUS_2                1                 31
  CLUS_3                3                 19
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        4      2      0
  13Q GAIN WILD-TYPE     32     14     26
D25V5, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                4                 32
  CLUS_2                2                 14
  CLUS_3                0                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        2      0      4
  13Q GAIN WILD-TYPE     24     10     38
D25V6, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                0                 10
  CLUS_3                4                 38
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        4      2      0
  13Q GAIN WILD-TYPE     33     16     23
D25V7, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                4                 33
  CLUS_2                2                 16
  CLUS_3                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        4      0      2
  13Q GAIN WILD-TYPE     36     11     25
D25V8, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                4                 36
  CLUS_2                0                 11
  CLUS_3                2                 25

Clustering(26) Variable = 14Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q GAIN MUTATED        6      3      9      2      1
  14Q GAIN WILD-TYPE     26     21      6      8      8
D26V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q GAIN MUTATED        3      3      9      1      2
  14Q GAIN WILD-TYPE     15      8     11     17      9
D26V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED        2      6      8      1
  14Q GAIN WILD-TYPE     22      7      9     22
D26V3, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                2                 22
  CLUS_2                6                  7
  CLUS_3                8                  9
  CLUS_4                1                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        3      2     12
  14Q GAIN WILD-TYPE     20     30     10
D26V4, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                3                 20
  CLUS_2                2                 30
  CLUS_3               12                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       17      0      1
  14Q GAIN WILD-TYPE     19     16     25
D26V5, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               17                 19
  CLUS_2                0                 16
  CLUS_3                1                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        0      0     18
  14Q GAIN WILD-TYPE     26     10     24
D26V6, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                0                 26
  CLUS_2                0                 10
  CLUS_3               18                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       17      1      0
  14Q GAIN WILD-TYPE     20     17     23
D26V7, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               17                 20
  CLUS_2                1                 17
  CLUS_3                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       18      0      0
  14Q GAIN WILD-TYPE     22     11     27
D26V8, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               18                 22
  CLUS_2                0                 11
  CLUS_3                0                 27

Clustering(27) Variable = 15Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q GAIN MUTATED        2      4      2      3      0
  15Q GAIN WILD-TYPE     30     20     13      7      9
D27V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q GAIN MUTATED        0      2      6      1      1
  15Q GAIN WILD-TYPE     18      9     14     17     10
D27V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED        0      3      5      2
  15Q GAIN WILD-TYPE     24     10     12     21
D27V3, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                0                 24
  CLUS_2                3                 10
  CLUS_3                5                 12
  CLUS_4                2                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        1      2      7
  15Q GAIN WILD-TYPE     22     30     15
D27V4, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                1                 22
  CLUS_2                2                 30
  CLUS_3                7                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        7      1      2
  15Q GAIN WILD-TYPE     29     15     24
D27V5, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                7                 29
  CLUS_2                1                 15
  CLUS_3                2                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        1      1      8
  15Q GAIN WILD-TYPE     25      9     34
D27V6, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                1                  9
  CLUS_3                8                 34
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        7      2      1
  15Q GAIN WILD-TYPE     30     16     22
D27V7, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                7                 30
  CLUS_2                2                 16
  CLUS_3                1                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        8      1      1
  15Q GAIN WILD-TYPE     32     10     26
D27V8, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                8                 32
  CLUS_2                1                 10
  CLUS_3                1                 26

Clustering(28) Variable = 16P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P GAIN MUTATED        6     24     10      4      5
  16P GAIN WILD-TYPE     26      0      5      6      4
D28V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P GAIN MUTATED        4      6     16     10      6
  16P GAIN WILD-TYPE     14      5      4      8      5
D28V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED        3     10     13     16
  16P GAIN WILD-TYPE     21      3      4      7
D28V3, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                3                 21
  CLUS_2               10                  3
  CLUS_3               13                  4
  CLUS_4               16                  7
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        4     19     19
  16P GAIN WILD-TYPE     19     13      3
D28V4, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                4                 19
  CLUS_2               19                 13
  CLUS_3               19                  3
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       17      6     19
  16P GAIN WILD-TYPE     19     10      7
D28V5, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               17                 19
  CLUS_2                6                 10
  CLUS_3               19                  7
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       16      7     19
  16P GAIN WILD-TYPE     10      3     23
D28V6, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               16                 10
  CLUS_2                7                  3
  CLUS_3               19                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       18      6     18
  16P GAIN WILD-TYPE     19     12      5
D28V7, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               18                 19
  CLUS_2                6                 12
  CLUS_3               18                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       19      7     16
  16P GAIN WILD-TYPE     21      4     11
D28V8, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               19                 21
  CLUS_2                7                  4
  CLUS_3               16                 11

Clustering(29) Variable = 16Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q GAIN MUTATED        6     23     10      3      5
  16Q GAIN WILD-TYPE     26      1      5      7      4
D29V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q GAIN MUTATED        4      5     16     11      6
  16Q GAIN WILD-TYPE     14      6      4      7      5
D29V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        4      9     13     16
  16Q GAIN WILD-TYPE     20      4      4      7
D29V3, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                9                  4
  CLUS_3               13                  4
  CLUS_4               16                  7
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        4     20     18
  16Q GAIN WILD-TYPE     19     12      4
D29V4, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                4                 19
  CLUS_2               20                 12
  CLUS_3               18                  4
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       18      5     19
  16Q GAIN WILD-TYPE     18     11      7
D29V5, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               18                 18
  CLUS_2                5                 11
  CLUS_3               19                  7
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       16      7     19
  16Q GAIN WILD-TYPE     10      3     23
D29V6, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               16                 10
  CLUS_2                7                  3
  CLUS_3               19                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       18      6     18
  16Q GAIN WILD-TYPE     19     12      5
D29V7, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               18                 19
  CLUS_2                6                 12
  CLUS_3               18                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       19      7     16
  16Q GAIN WILD-TYPE     21      4     11
D29V8, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               19                 21
  CLUS_2                7                  4
  CLUS_3               16                 11

Clustering(30) Variable = 17P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P GAIN MUTATED        2      0      0      1      2
  17P GAIN WILD-TYPE     30     24     15      9      7
D30V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P GAIN MUTATED        0      1      0      1      1
  17P GAIN WILD-TYPE     18     10     20     17     10
D30V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED        1      0      0      2
  17P GAIN WILD-TYPE     23     13     17     21
D30V3, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                1                 23
  CLUS_2                0                 13
  CLUS_3                0                 17
  CLUS_4                2                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        0      3      0
  17P GAIN WILD-TYPE     23     29     22
D30V4, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                0                 23
  CLUS_2                3                 29
  CLUS_3                0                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        0      1      2
  17P GAIN WILD-TYPE     36     15     24
D30V5, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                0                 36
  CLUS_2                1                 15
  CLUS_3                2                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        1      1      1
  17P GAIN WILD-TYPE     25      9     41
D30V6, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                1                  9
  CLUS_3                1                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        0      1      2
  17P GAIN WILD-TYPE     37     17     21
D30V7, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                0                 37
  CLUS_2                1                 17
  CLUS_3                2                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        0      1      2
  17P GAIN WILD-TYPE     40     10     25
D30V8, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                1                 10
  CLUS_3                2                 25

Clustering(31) Variable = 17Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q GAIN MUTATED        4      0      0      0      3
  17Q GAIN WILD-TYPE     28     24     15     10      6
D31V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q GAIN MUTATED        0      1      0      1      1
  17Q GAIN WILD-TYPE     18     10     20     17     10
D31V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED        1      0      0      2
  17Q GAIN WILD-TYPE     23     13     17     21
D31V3, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                1                 23
  CLUS_2                0                 13
  CLUS_3                0                 17
  CLUS_4                2                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        0      3      0
  17Q GAIN WILD-TYPE     23     29     22
D31V4, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                0                 23
  CLUS_2                3                 29
  CLUS_3                0                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        0      1      2
  17Q GAIN WILD-TYPE     36     15     24
D31V5, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                0                 36
  CLUS_2                1                 15
  CLUS_3                2                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        1      1      1
  17Q GAIN WILD-TYPE     25      9     41
D31V6, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                1                  9
  CLUS_3                1                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        0      1      2
  17Q GAIN WILD-TYPE     37     17     21
D31V7, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                0                 37
  CLUS_2                1                 17
  CLUS_3                2                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        0      1      2
  17Q GAIN WILD-TYPE     40     10     25
D31V8, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                0                 40
  CLUS_2                1                 10
  CLUS_3                2                 25

Clustering(32) Variable = 18P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P GAIN MUTATED        4      1      0      1      0
  18P GAIN WILD-TYPE     28     23     15      9      9
D32V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P GAIN MUTATED        1      0      0      1      0
  18P GAIN WILD-TYPE     17     11     20     17     11
D32V2, multiclass
[1] "Remove cluster labels:" "18P GAIN MUTATED"      
clus
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J9         TCGA-OR-A5JA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JB         TCGA-OR-A5JC         TCGA-OR-A5JD 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JE         TCGA-OR-A5JF         TCGA-OR-A5JG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JI         TCGA-OR-A5JJ         TCGA-OR-A5JK 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JM         TCGA-OR-A5JO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JZ         TCGA-OR-A5K0         TCGA-OR-A5K1 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K2         TCGA-OR-A5K3         TCGA-OR-A5K4 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5L3         TCGA-OR-A5L4         TCGA-OR-A5L5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5L6         TCGA-OR-A5L8         TCGA-OR-A5L9 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LH 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"18P GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED        2      0      0      0
  18P GAIN WILD-TYPE     22     13     17     23
D32V3, multiclass
[1] "Remove cluster labels:" "18P GAIN MUTATED"      
clus
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 2                 75 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5J5         TCGA-OR-A5J6         TCGA-OR-A5J7 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5J9         TCGA-OR-A5JA         TCGA-OR-A5JB 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JC         TCGA-OR-A5JD         TCGA-OR-A5JE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JF         TCGA-OR-A5JG         TCGA-OR-A5JI 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JJ         TCGA-OR-A5JK         TCGA-OR-A5JL 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JM         TCGA-OR-A5JO         TCGA-OR-A5JP 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JQ         TCGA-OR-A5JR         TCGA-OR-A5JS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JT         TCGA-OR-A5JV         TCGA-OR-A5JW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JX         TCGA-OR-A5JY         TCGA-OR-A5JZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K0         TCGA-OR-A5K1         TCGA-OR-A5K2 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K3         TCGA-OR-A5K4         TCGA-OR-A5K5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K6         TCGA-OR-A5K8         TCGA-OR-A5K9 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KO         TCGA-OR-A5KT         TCGA-OR-A5KU 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KV         TCGA-OR-A5KW         TCGA-OR-A5KX 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KY         TCGA-OR-A5KZ         TCGA-OR-A5L3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5L4         TCGA-OR-A5L5         TCGA-OR-A5L6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5L8         TCGA-OR-A5L9         TCGA-OR-A5LA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LB         TCGA-OR-A5LC         TCGA-OR-A5LE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LG         TCGA-OR-A5LH         TCGA-OR-A5LJ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LK         TCGA-OR-A5LL         TCGA-OR-A5LM 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LN         TCGA-OR-A5LO         TCGA-OR-A5LP 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LR         TCGA-OR-A5LS         TCGA-OR-A5LT 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OU-A5PI         TCGA-P6-A5OG         TCGA-PA-A5YG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-PK-A5H9         TCGA-PK-A5HA         TCGA-PK-A5HB 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        1      1      0
  18P GAIN WILD-TYPE     22     31     22
D32V4, multiclass
[1] "Remove cluster labels:" "18P GAIN MUTATED"      
clus
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 2                 75 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5J5         TCGA-OR-A5J6         TCGA-OR-A5J7 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5J9         TCGA-OR-A5JA         TCGA-OR-A5JB 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JC         TCGA-OR-A5JD         TCGA-OR-A5JE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JF         TCGA-OR-A5JG         TCGA-OR-A5JI 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JJ         TCGA-OR-A5JK         TCGA-OR-A5JL 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JM         TCGA-OR-A5JO         TCGA-OR-A5JP 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JQ         TCGA-OR-A5JR         TCGA-OR-A5JS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JT         TCGA-OR-A5JV         TCGA-OR-A5JW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JX         TCGA-OR-A5JY         TCGA-OR-A5JZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K0         TCGA-OR-A5K1         TCGA-OR-A5K2 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K3         TCGA-OR-A5K4         TCGA-OR-A5K5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K6         TCGA-OR-A5K8         TCGA-OR-A5K9 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KO         TCGA-OR-A5KT         TCGA-OR-A5KU 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KV         TCGA-OR-A5KW         TCGA-OR-A5KX 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KY         TCGA-OR-A5KZ         TCGA-OR-A5L3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5L4         TCGA-OR-A5L5         TCGA-OR-A5L6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5L8         TCGA-OR-A5L9         TCGA-OR-A5LA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LB         TCGA-OR-A5LC         TCGA-OR-A5LE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LG         TCGA-OR-A5LH         TCGA-OR-A5LJ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LK         TCGA-OR-A5LL         TCGA-OR-A5LM 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LN         TCGA-OR-A5LO         TCGA-OR-A5LP 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LR         TCGA-OR-A5LS         TCGA-OR-A5LT 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OU-A5PI         TCGA-P6-A5OG         TCGA-PA-A5YG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-PK-A5H9         TCGA-PK-A5HA         TCGA-PK-A5HB 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        1      1      0
  18P GAIN WILD-TYPE     35     15     26
D32V5, multiclass
[1] "Remove cluster labels:" "18P GAIN MUTATED"      
clus
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J9         TCGA-OR-A5JA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JB         TCGA-OR-A5JC         TCGA-OR-A5JD 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JE         TCGA-OR-A5JF         TCGA-OR-A5JG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JI         TCGA-OR-A5JJ         TCGA-OR-A5JK 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JM         TCGA-OR-A5JO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JZ         TCGA-OR-A5K0         TCGA-OR-A5K1 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K2         TCGA-OR-A5K3         TCGA-OR-A5K4 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5L3         TCGA-OR-A5L4         TCGA-OR-A5L5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5L6         TCGA-OR-A5L8         TCGA-OR-A5L9 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LH 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"18P GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        0      0      2
  18P GAIN WILD-TYPE     26     10     40
D32V6, multiclass
[1] "Remove cluster labels:" "18P GAIN MUTATED"      
clus
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J9         TCGA-OR-A5JA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JB         TCGA-OR-A5JC         TCGA-OR-A5JD 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JE         TCGA-OR-A5JF         TCGA-OR-A5JG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JI         TCGA-OR-A5JJ         TCGA-OR-A5JK 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JM         TCGA-OR-A5JO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JZ         TCGA-OR-A5K0         TCGA-OR-A5K1 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K2         TCGA-OR-A5K3         TCGA-OR-A5K4 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5L3         TCGA-OR-A5L4         TCGA-OR-A5L5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5L6         TCGA-OR-A5L8         TCGA-OR-A5L9 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LH 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"18P GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        1      1      0
  18P GAIN WILD-TYPE     36     17     23
D32V7, multiclass
[1] "Remove cluster labels:" "18P GAIN MUTATED"      
clus
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J9         TCGA-OR-A5JA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JB         TCGA-OR-A5JC         TCGA-OR-A5JD 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JE         TCGA-OR-A5JF         TCGA-OR-A5JG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JI         TCGA-OR-A5JJ         TCGA-OR-A5JK 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JM         TCGA-OR-A5JO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JZ         TCGA-OR-A5K0         TCGA-OR-A5K1 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K2         TCGA-OR-A5K3         TCGA-OR-A5K4 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5L3         TCGA-OR-A5L4         TCGA-OR-A5L5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5L6         TCGA-OR-A5L8         TCGA-OR-A5L9 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LH 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"18P GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        1      0      1
  18P GAIN WILD-TYPE     39     11     26
D32V8, multiclass
[1] "Remove cluster labels:" "18P GAIN MUTATED"      
clus
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J9         TCGA-OR-A5JA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JB         TCGA-OR-A5JC         TCGA-OR-A5JD 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JE         TCGA-OR-A5JF         TCGA-OR-A5JG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JI         TCGA-OR-A5JJ         TCGA-OR-A5JK 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JM         TCGA-OR-A5JO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5JZ         TCGA-OR-A5K0         TCGA-OR-A5K1 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K2         TCGA-OR-A5K3         TCGA-OR-A5K4 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5L3         TCGA-OR-A5L4         TCGA-OR-A5L5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5L6         TCGA-OR-A5L8         TCGA-OR-A5L9 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LH 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"18P GAIN WILD-TYPE" 

Clustering(33) Variable = 18Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q GAIN MUTATED        3      1      0      1      0
  18Q GAIN WILD-TYPE     29     23     15      9      9
D33V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q GAIN MUTATED        1      0      0      0      0
  18Q GAIN WILD-TYPE     17     11     20     18     11
D33V2, multiclass
[1] "Remove cluster labels:" "18Q GAIN MUTATED"      
clus
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 1                 77 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JJ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JK         TCGA-OR-A5JL         TCGA-OR-A5JM 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JO         TCGA-OR-A5JP         TCGA-OR-A5JQ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JS         TCGA-OR-A5JT 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JV         TCGA-OR-A5JW         TCGA-OR-A5JX 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JY         TCGA-OR-A5JZ         TCGA-OR-A5K0 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K1         TCGA-OR-A5K2         TCGA-OR-A5K3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K8         TCGA-OR-A5K9         TCGA-OR-A5KO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KT         TCGA-OR-A5KU         TCGA-OR-A5KV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KW         TCGA-OR-A5KX         TCGA-OR-A5KY 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5L3         TCGA-OR-A5L4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5L5         TCGA-OR-A5L6         TCGA-OR-A5L8 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5L9         TCGA-OR-A5LA         TCGA-OR-A5LB 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LC         TCGA-OR-A5LE         TCGA-OR-A5LG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LH         TCGA-OR-A5LJ         TCGA-OR-A5LK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LL         TCGA-OR-A5LM         TCGA-OR-A5LN 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LO         TCGA-OR-A5LP         TCGA-OR-A5LR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LS         TCGA-OR-A5LT         TCGA-OU-A5PI 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-P6-A5OG         TCGA-PA-A5YG         TCGA-PK-A5H9 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-PK-A5HA         TCGA-PK-A5HB 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED        1      0      0      0
  18Q GAIN WILD-TYPE     23     13     17     23
D33V3, multiclass
[1] "Remove cluster labels:" "18Q GAIN MUTATED"      
clus
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 1                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5J5         TCGA-OR-A5J6         TCGA-OR-A5J7 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5J8         TCGA-OR-A5J9         TCGA-OR-A5JA 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JB         TCGA-OR-A5JC         TCGA-OR-A5JD 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JE         TCGA-OR-A5JF         TCGA-OR-A5JG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JI         TCGA-OR-A5JJ         TCGA-OR-A5JK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JM         TCGA-OR-A5JO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JZ         TCGA-OR-A5K0         TCGA-OR-A5K1 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K2         TCGA-OR-A5K3         TCGA-OR-A5K4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5L3         TCGA-OR-A5L4         TCGA-OR-A5L5 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5L6         TCGA-OR-A5L8         TCGA-OR-A5L9 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LH 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"18Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        1      0      0
  18Q GAIN WILD-TYPE     22     32     22
D33V4, multiclass
[1] "Remove cluster labels:" "18Q GAIN MUTATED"      
clus
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 1                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5J5         TCGA-OR-A5J6         TCGA-OR-A5J7 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5J8         TCGA-OR-A5J9         TCGA-OR-A5JA 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JB         TCGA-OR-A5JC         TCGA-OR-A5JD 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JE         TCGA-OR-A5JF         TCGA-OR-A5JG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JI         TCGA-OR-A5JJ         TCGA-OR-A5JK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JM         TCGA-OR-A5JO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JZ         TCGA-OR-A5K0         TCGA-OR-A5K1 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K2         TCGA-OR-A5K3         TCGA-OR-A5K4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5L3         TCGA-OR-A5L4         TCGA-OR-A5L5 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5L6         TCGA-OR-A5L8         TCGA-OR-A5L9 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LH 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"18Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        1      0      0
  18Q GAIN WILD-TYPE     35     16     26
D33V5, multiclass
[1] "Remove cluster labels:" "18Q GAIN MUTATED"      
clus
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 1                 77 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JJ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JK         TCGA-OR-A5JL         TCGA-OR-A5JM 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JO         TCGA-OR-A5JP         TCGA-OR-A5JQ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JS         TCGA-OR-A5JT 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JV         TCGA-OR-A5JW         TCGA-OR-A5JX 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JY         TCGA-OR-A5JZ         TCGA-OR-A5K0 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K1         TCGA-OR-A5K2         TCGA-OR-A5K3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K8         TCGA-OR-A5K9         TCGA-OR-A5KO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KT         TCGA-OR-A5KU         TCGA-OR-A5KV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KW         TCGA-OR-A5KX         TCGA-OR-A5KY 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5L3         TCGA-OR-A5L4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5L5         TCGA-OR-A5L6         TCGA-OR-A5L8 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5L9         TCGA-OR-A5LA         TCGA-OR-A5LB 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LC         TCGA-OR-A5LE         TCGA-OR-A5LG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LH         TCGA-OR-A5LJ         TCGA-OR-A5LK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LL         TCGA-OR-A5LM         TCGA-OR-A5LN 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LO         TCGA-OR-A5LP         TCGA-OR-A5LR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LS         TCGA-OR-A5LT         TCGA-OU-A5PI 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-P6-A5OG         TCGA-PA-A5YG         TCGA-PK-A5H9 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-PK-A5HA         TCGA-PK-A5HB 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        0      0      1
  18Q GAIN WILD-TYPE     26     10     41
D33V6, multiclass
[1] "Remove cluster labels:" "18Q GAIN MUTATED"      
clus
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 1                 77 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JJ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JK         TCGA-OR-A5JL         TCGA-OR-A5JM 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JO         TCGA-OR-A5JP         TCGA-OR-A5JQ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JS         TCGA-OR-A5JT 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JV         TCGA-OR-A5JW         TCGA-OR-A5JX 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JY         TCGA-OR-A5JZ         TCGA-OR-A5K0 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K1         TCGA-OR-A5K2         TCGA-OR-A5K3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K8         TCGA-OR-A5K9         TCGA-OR-A5KO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KT         TCGA-OR-A5KU         TCGA-OR-A5KV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KW         TCGA-OR-A5KX         TCGA-OR-A5KY 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5L3         TCGA-OR-A5L4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5L5         TCGA-OR-A5L6         TCGA-OR-A5L8 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5L9         TCGA-OR-A5LA         TCGA-OR-A5LB 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LC         TCGA-OR-A5LE         TCGA-OR-A5LG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LH         TCGA-OR-A5LJ         TCGA-OR-A5LK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LL         TCGA-OR-A5LM         TCGA-OR-A5LN 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LO         TCGA-OR-A5LP         TCGA-OR-A5LR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LS         TCGA-OR-A5LT         TCGA-OU-A5PI 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-P6-A5OG         TCGA-PA-A5YG         TCGA-PK-A5H9 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-PK-A5HA         TCGA-PK-A5HB 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        1      0      0
  18Q GAIN WILD-TYPE     36     18     23
D33V7, multiclass
[1] "Remove cluster labels:" "18Q GAIN MUTATED"      
clus
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 1                 77 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JJ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JK         TCGA-OR-A5JL         TCGA-OR-A5JM 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JO         TCGA-OR-A5JP         TCGA-OR-A5JQ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JS         TCGA-OR-A5JT 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JV         TCGA-OR-A5JW         TCGA-OR-A5JX 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JY         TCGA-OR-A5JZ         TCGA-OR-A5K0 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K1         TCGA-OR-A5K2         TCGA-OR-A5K3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K8         TCGA-OR-A5K9         TCGA-OR-A5KO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KT         TCGA-OR-A5KU         TCGA-OR-A5KV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KW         TCGA-OR-A5KX         TCGA-OR-A5KY 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5L3         TCGA-OR-A5L4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5L5         TCGA-OR-A5L6         TCGA-OR-A5L8 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5L9         TCGA-OR-A5LA         TCGA-OR-A5LB 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LC         TCGA-OR-A5LE         TCGA-OR-A5LG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LH         TCGA-OR-A5LJ         TCGA-OR-A5LK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LL         TCGA-OR-A5LM         TCGA-OR-A5LN 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LO         TCGA-OR-A5LP         TCGA-OR-A5LR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LS         TCGA-OR-A5LT         TCGA-OU-A5PI 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-P6-A5OG         TCGA-PA-A5YG         TCGA-PK-A5H9 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-PK-A5HA         TCGA-PK-A5HB 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        1      0      0
  18Q GAIN WILD-TYPE     39     11     27
D33V8, multiclass
[1] "Remove cluster labels:" "18Q GAIN MUTATED"      
clus
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 1                 77 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JJ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JK         TCGA-OR-A5JL         TCGA-OR-A5JM 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JO         TCGA-OR-A5JP         TCGA-OR-A5JQ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JS         TCGA-OR-A5JT 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JV         TCGA-OR-A5JW         TCGA-OR-A5JX 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5JY         TCGA-OR-A5JZ         TCGA-OR-A5K0 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K1         TCGA-OR-A5K2         TCGA-OR-A5K3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5K8         TCGA-OR-A5K9         TCGA-OR-A5KO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KT         TCGA-OR-A5KU         TCGA-OR-A5KV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KW         TCGA-OR-A5KX         TCGA-OR-A5KY 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5L3         TCGA-OR-A5L4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5L5         TCGA-OR-A5L6         TCGA-OR-A5L8 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5L9         TCGA-OR-A5LA         TCGA-OR-A5LB 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LC         TCGA-OR-A5LE         TCGA-OR-A5LG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LH         TCGA-OR-A5LJ         TCGA-OR-A5LK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LL         TCGA-OR-A5LM         TCGA-OR-A5LN 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LO         TCGA-OR-A5LP         TCGA-OR-A5LR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-OR-A5LS         TCGA-OR-A5LT         TCGA-OU-A5PI 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-P6-A5OG         TCGA-PA-A5YG         TCGA-PK-A5H9 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-PK-A5HA         TCGA-PK-A5HB 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 

Clustering(34) Variable = 19P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P GAIN MUTATED       15     14     14      5      8
  19P GAIN WILD-TYPE     17     10      1      5      1
D34V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P GAIN MUTATED       13      8     16      7      5
  19P GAIN WILD-TYPE      5      3      4     11      6
D34V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED       11     13     13     11
  19P GAIN WILD-TYPE     13      0      4     12
D34V3, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               11                 13
  CLUS_2               13                  0
  CLUS_3               13                  4
  CLUS_4               11                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       14     14     20
  19P GAIN WILD-TYPE      9     18      2
D34V4, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               14                  9
  CLUS_2               14                 18
  CLUS_3               20                  2
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       25     10     14
  19P GAIN WILD-TYPE     11      6     12
D34V5, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               25                 11
  CLUS_2               10                  6
  CLUS_3               14                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       15      6     28
  19P GAIN WILD-TYPE     11      4     14
D34V6, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               15                 11
  CLUS_2                6                  4
  CLUS_3               28                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       26     11     12
  19P GAIN WILD-TYPE     11      7     11
D34V7, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               26                 11
  CLUS_2               11                  7
  CLUS_3               12                 11
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       28      6     15
  19P GAIN WILD-TYPE     12      5     12
D34V8, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               28                 12
  CLUS_2                6                  5
  CLUS_3               15                 12

Clustering(35) Variable = 19Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q GAIN MUTATED       12     14     15      5      6
  19Q GAIN WILD-TYPE     20     10      0      5      3
D35V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q GAIN MUTATED       12      6     16      7      4
  19Q GAIN WILD-TYPE      6      5      4     11      7
D35V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED       10     13     12      9
  19Q GAIN WILD-TYPE     14      0      5     14
D35V3, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               10                 14
  CLUS_2               13                  0
  CLUS_3               12                  5
  CLUS_4                9                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       12     13     19
  19Q GAIN WILD-TYPE     11     19      3
D35V4, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               12                 11
  CLUS_2               13                 19
  CLUS_3               19                  3
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       25      8     12
  19Q GAIN WILD-TYPE     11      8     14
D35V5, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               25                 11
  CLUS_2                8                  8
  CLUS_3               12                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       13      5     27
  19Q GAIN WILD-TYPE     13      5     15
D35V6, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               13                 13
  CLUS_2                5                  5
  CLUS_3               27                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       26      8     11
  19Q GAIN WILD-TYPE     11     10     12
D35V7, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               26                 11
  CLUS_2                8                 10
  CLUS_3               11                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       27      5     13
  19Q GAIN WILD-TYPE     13      6     14
D35V8, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               27                 13
  CLUS_2                5                  6
  CLUS_3               13                 14

Clustering(36) Variable = 20P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P GAIN MUTATED        7     22      9      2      6
  20P GAIN WILD-TYPE     25      2      6      8      3
D36V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P GAIN MUTATED        6      4     12     12      6
  20P GAIN WILD-TYPE     12      7      8      6      5
D36V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED        4      9      8     18
  20P GAIN WILD-TYPE     20      4      9      5
D36V3, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                9                  4
  CLUS_3                8                  9
  CLUS_4               18                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED        6     22     11
  20P GAIN WILD-TYPE     17     10     11
D36V4, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                6                 17
  CLUS_2               22                 10
  CLUS_3               11                 11
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       13      7     20
  20P GAIN WILD-TYPE     23      9      6
D36V5, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               13                 23
  CLUS_2                7                  9
  CLUS_3               20                  6
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       18      8     14
  20P GAIN WILD-TYPE      8      2     28
D36V6, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               18                  8
  CLUS_2                8                  2
  CLUS_3               14                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       13      7     20
  20P GAIN WILD-TYPE     24     11      3
D36V7, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               13                 24
  CLUS_2                7                 11
  CLUS_3               20                  3
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       14      8     18
  20P GAIN WILD-TYPE     26      3      9
D36V8, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               14                 26
  CLUS_2                8                  3
  CLUS_3               18                  9

Clustering(37) Variable = 20Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q GAIN MUTATED        9     21     11      2      6
  20Q GAIN WILD-TYPE     23      3      4      8      3
D37V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q GAIN MUTATED        6      4     14     13      6
  20Q GAIN WILD-TYPE     12      7      6      5      5
D37V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED        5     11      8     18
  20Q GAIN WILD-TYPE     19      2      9      5
D37V3, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                5                 19
  CLUS_2               11                  2
  CLUS_3                8                  9
  CLUS_4               18                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED        6     23     13
  20Q GAIN WILD-TYPE     17      9      9
D37V4, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                6                 17
  CLUS_2               23                  9
  CLUS_3               13                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       15      8     20
  20Q GAIN WILD-TYPE     21      8      6
D37V5, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               15                 21
  CLUS_2                8                  8
  CLUS_3               20                  6
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       18      8     17
  20Q GAIN WILD-TYPE      8      2     25
D37V6, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               18                  8
  CLUS_2                8                  2
  CLUS_3               17                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       15      8     20
  20Q GAIN WILD-TYPE     22     10      3
D37V7, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               15                 22
  CLUS_2                8                 10
  CLUS_3               20                  3
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       16      8     19
  20Q GAIN WILD-TYPE     24      3      8
D37V8, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               16                 24
  CLUS_2                8                  3
  CLUS_3               19                  8

Clustering(38) Variable = 21Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q GAIN MUTATED        8      8     10      4      1
  21Q GAIN WILD-TYPE     24     16      5      6      8
D38V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q GAIN MUTATED        8      2     12      2      2
  21Q GAIN WILD-TYPE     10      9      8     16      9
D38V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED        7      9      6      4
  21Q GAIN WILD-TYPE     17      4     11     19
D38V3, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                7                 17
  CLUS_2                9                  4
  CLUS_3                6                 11
  CLUS_4                4                 19
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        7      5     14
  21Q GAIN WILD-TYPE     16     27      8
D38V4, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                7                 16
  CLUS_2                5                 27
  CLUS_3               14                  8
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       18      4      4
  21Q GAIN WILD-TYPE     18     12     22
D38V5, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               18                 18
  CLUS_2                4                 12
  CLUS_3                4                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        4      4     18
  21Q GAIN WILD-TYPE     22      6     24
D38V6, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                4                 22
  CLUS_2                4                  6
  CLUS_3               18                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       18      4      4
  21Q GAIN WILD-TYPE     19     14     19
D38V7, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               18                 19
  CLUS_2                4                 14
  CLUS_3                4                 19
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       18      4      4
  21Q GAIN WILD-TYPE     22      7     23
D38V8, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               18                 22
  CLUS_2                4                  7
  CLUS_3                4                 23

Clustering(39) Variable = 22Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q GAIN MUTATED        1      0      1      0      1
  22Q GAIN WILD-TYPE     31     24     14     10      8
D39V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q GAIN MUTATED        0      0      1      0      1
  22Q GAIN WILD-TYPE     18     11     19     18     10
D39V2, multiclass
[1] "Remove cluster labels:" "22Q GAIN MUTATED"      
clus
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JM         TCGA-OR-A5JO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JZ         TCGA-OR-A5K0         TCGA-OR-A5K1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K2         TCGA-OR-A5K3         TCGA-OR-A5K4 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5L3         TCGA-OR-A5L4         TCGA-OR-A5L5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5L6         TCGA-OR-A5L8         TCGA-OR-A5L9 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LD         TCGA-OR-A5LE         TCGA-OR-A5LG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"22Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED        0      1      1      0
  22Q GAIN WILD-TYPE     24     12     16     23
D39V3, multiclass
[1] "Remove cluster labels:" "22Q GAIN MUTATED"      
clus
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 2                 75 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5J5         TCGA-OR-A5J6         TCGA-OR-A5J7 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5J8         TCGA-OR-A5J9         TCGA-OR-A5JA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JB         TCGA-OR-A5JC         TCGA-OR-A5JD 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JE         TCGA-OR-A5JF         TCGA-OR-A5JG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JI         TCGA-OR-A5JK         TCGA-OR-A5JL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JM         TCGA-OR-A5JO         TCGA-OR-A5JP 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JQ         TCGA-OR-A5JR         TCGA-OR-A5JS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JT         TCGA-OR-A5JV         TCGA-OR-A5JW 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JX         TCGA-OR-A5JY         TCGA-OR-A5JZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K0         TCGA-OR-A5K1         TCGA-OR-A5K2 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K3         TCGA-OR-A5K4         TCGA-OR-A5K5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K6         TCGA-OR-A5K8         TCGA-OR-A5K9 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KO         TCGA-OR-A5KT         TCGA-OR-A5KU 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KV         TCGA-OR-A5KW         TCGA-OR-A5KX 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KY         TCGA-OR-A5KZ         TCGA-OR-A5L3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5L4         TCGA-OR-A5L5         TCGA-OR-A5L6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5L8         TCGA-OR-A5L9         TCGA-OR-A5LA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LB         TCGA-OR-A5LC         TCGA-OR-A5LD 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LJ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LK         TCGA-OR-A5LL         TCGA-OR-A5LM 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LN         TCGA-OR-A5LO         TCGA-OR-A5LP 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LR         TCGA-OR-A5LS         TCGA-OR-A5LT 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OU-A5PI         TCGA-P6-A5OG         TCGA-PA-A5YG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-PK-A5H9         TCGA-PK-A5HA         TCGA-PK-A5HB 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        0      1      1
  22Q GAIN WILD-TYPE     23     31     21
D39V4, multiclass
[1] "Remove cluster labels:" "22Q GAIN MUTATED"      
clus
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 2                 75 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5J5         TCGA-OR-A5J6         TCGA-OR-A5J7 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5J8         TCGA-OR-A5J9         TCGA-OR-A5JA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JB         TCGA-OR-A5JC         TCGA-OR-A5JD 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JE         TCGA-OR-A5JF         TCGA-OR-A5JG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JI         TCGA-OR-A5JK         TCGA-OR-A5JL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JM         TCGA-OR-A5JO         TCGA-OR-A5JP 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JQ         TCGA-OR-A5JR         TCGA-OR-A5JS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JT         TCGA-OR-A5JV         TCGA-OR-A5JW 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JX         TCGA-OR-A5JY         TCGA-OR-A5JZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K0         TCGA-OR-A5K1         TCGA-OR-A5K2 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K3         TCGA-OR-A5K4         TCGA-OR-A5K5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K6         TCGA-OR-A5K8         TCGA-OR-A5K9 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KO         TCGA-OR-A5KT         TCGA-OR-A5KU 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KV         TCGA-OR-A5KW         TCGA-OR-A5KX 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KY         TCGA-OR-A5KZ         TCGA-OR-A5L3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5L4         TCGA-OR-A5L5         TCGA-OR-A5L6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5L8         TCGA-OR-A5L9         TCGA-OR-A5LA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LB         TCGA-OR-A5LC         TCGA-OR-A5LD 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LJ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LK         TCGA-OR-A5LL         TCGA-OR-A5LM 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LN         TCGA-OR-A5LO         TCGA-OR-A5LP 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LR         TCGA-OR-A5LS         TCGA-OR-A5LT 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OU-A5PI         TCGA-P6-A5OG         TCGA-PA-A5YG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-PK-A5H9         TCGA-PK-A5HA         TCGA-PK-A5HB 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        1      0      1
  22Q GAIN WILD-TYPE     35     16     25
D39V5, multiclass
[1] "Remove cluster labels:" "22Q GAIN MUTATED"      
clus
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JM         TCGA-OR-A5JO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JZ         TCGA-OR-A5K0         TCGA-OR-A5K1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K2         TCGA-OR-A5K3         TCGA-OR-A5K4 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5L3         TCGA-OR-A5L4         TCGA-OR-A5L5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5L6         TCGA-OR-A5L8         TCGA-OR-A5L9 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LD         TCGA-OR-A5LE         TCGA-OR-A5LG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"22Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        1      0      1
  22Q GAIN WILD-TYPE     25     10     41
D39V6, multiclass
[1] "Remove cluster labels:" "22Q GAIN MUTATED"      
clus
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JM         TCGA-OR-A5JO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JZ         TCGA-OR-A5K0         TCGA-OR-A5K1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K2         TCGA-OR-A5K3         TCGA-OR-A5K4 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5L3         TCGA-OR-A5L4         TCGA-OR-A5L5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5L6         TCGA-OR-A5L8         TCGA-OR-A5L9 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LD         TCGA-OR-A5LE         TCGA-OR-A5LG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"22Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        1      1      0
  22Q GAIN WILD-TYPE     36     17     23
D39V7, multiclass
[1] "Remove cluster labels:" "22Q GAIN MUTATED"      
clus
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JM         TCGA-OR-A5JO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JZ         TCGA-OR-A5K0         TCGA-OR-A5K1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K2         TCGA-OR-A5K3         TCGA-OR-A5K4 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5L3         TCGA-OR-A5L4         TCGA-OR-A5L5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5L6         TCGA-OR-A5L8         TCGA-OR-A5L9 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LD         TCGA-OR-A5LE         TCGA-OR-A5LG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"22Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        1      0      1
  22Q GAIN WILD-TYPE     39     11     26
D39V8, multiclass
[1] "Remove cluster labels:" "22Q GAIN MUTATED"      
clus
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5J7         TCGA-OR-A5J8         TCGA-OR-A5J9 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JA         TCGA-OR-A5JB         TCGA-OR-A5JC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JL         TCGA-OR-A5JM         TCGA-OR-A5JO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JP         TCGA-OR-A5JQ         TCGA-OR-A5JR 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JS         TCGA-OR-A5JT         TCGA-OR-A5JV 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JW         TCGA-OR-A5JX         TCGA-OR-A5JY 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5JZ         TCGA-OR-A5K0         TCGA-OR-A5K1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K2         TCGA-OR-A5K3         TCGA-OR-A5K4 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K5         TCGA-OR-A5K6         TCGA-OR-A5K8 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5K9         TCGA-OR-A5KO         TCGA-OR-A5KT 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KU         TCGA-OR-A5KV         TCGA-OR-A5KW 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5KX         TCGA-OR-A5KY         TCGA-OR-A5KZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5L3         TCGA-OR-A5L4         TCGA-OR-A5L5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5L6         TCGA-OR-A5L8         TCGA-OR-A5L9 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LA         TCGA-OR-A5LB         TCGA-OR-A5LC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LD         TCGA-OR-A5LE         TCGA-OR-A5LG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-PK-A5HB 
"22Q GAIN WILD-TYPE" 

Clustering(40) Variable = XQ GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ GAIN MUTATED        6     20      9      2      3
  XQ GAIN WILD-TYPE     26      4      6      8      6
D40V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ GAIN MUTATED        4      6      9     10      7
  XQ GAIN WILD-TYPE     14      5     11      8      4
D40V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        4     10     10     12
  XQ GAIN WILD-TYPE     20      3      7     11
D40V3, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               4                20
  CLUS_2              10                 3
  CLUS_3              10                 7
  CLUS_4              12                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        5     18     13
  XQ GAIN WILD-TYPE     18     14      9
D40V4, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               5                18
  CLUS_2              18                14
  CLUS_3              13                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       15      8     13
  XQ GAIN WILD-TYPE     21      8     13
D40V5, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              15                21
  CLUS_2               8                 8
  CLUS_3              13                13
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       15      4     17
  XQ GAIN WILD-TYPE     11      6     25
D40V6, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              15                11
  CLUS_2               4                 6
  CLUS_3              17                25
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       15      9     12
  XQ GAIN WILD-TYPE     22      9     11
D40V7, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              15                22
  CLUS_2               9                 9
  CLUS_3              12                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       16      4     16
  XQ GAIN WILD-TYPE     24      7     11
D40V8, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              16                24
  CLUS_2               4                 7
  CLUS_3              16                11

Clustering(41) Variable = 1P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P LOSS MUTATED       12      4      4      4      5
  1P LOSS WILD-TYPE     20     20     11      6      4
D41V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P LOSS MUTATED        8      3      9      2      4
  1P LOSS WILD-TYPE     10      8     11     16      7
D41V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED       11      3      4      8
  1P LOSS WILD-TYPE     13     10     13     15
D41V3, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              11                13
  CLUS_2               3                10
  CLUS_3               4                13
  CLUS_4               8                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       12      8      6
  1P LOSS WILD-TYPE     11     24     16
D41V4, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              12                11
  CLUS_2               8                24
  CLUS_3               6                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       11      4     11
  1P LOSS WILD-TYPE     25     12     15
D41V5, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              11                25
  CLUS_2               4                12
  CLUS_3              11                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        8      5     13
  1P LOSS WILD-TYPE     18      5     29
D41V6, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               8                18
  CLUS_2               5                 5
  CLUS_3              13                29
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       12      5      9
  1P LOSS WILD-TYPE     25     13     14
D41V7, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              12                25
  CLUS_2               5                13
  CLUS_3               9                14
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       13      5      8
  1P LOSS WILD-TYPE     27      6     19
D41V8, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              13                27
  CLUS_2               5                 6
  CLUS_3               8                19

Clustering(42) Variable = 1Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q LOSS MUTATED        7      4      3      2      4
  1Q LOSS WILD-TYPE     25     20     12      8      5
D42V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q LOSS MUTATED        6      0      7      2      2
  1Q LOSS WILD-TYPE     12     11     13     16      9
D42V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED        6      2      4      5
  1Q LOSS WILD-TYPE     18     11     13     18
D42V3, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               6                18
  CLUS_2               2                11
  CLUS_3               4                13
  CLUS_4               5                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        6      6      5
  1Q LOSS WILD-TYPE     17     26     17
D42V4, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               6                17
  CLUS_2               6                26
  CLUS_3               5                17
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        7      2      8
  1Q LOSS WILD-TYPE     29     14     18
D42V5, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               7                29
  CLUS_2               2                14
  CLUS_3               8                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        6      4      7
  1Q LOSS WILD-TYPE     20      6     35
D42V6, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               6                20
  CLUS_2               4                 6
  CLUS_3               7                35
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        7      3      7
  1Q LOSS WILD-TYPE     30     15     16
D42V7, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               7                30
  CLUS_2               3                15
  CLUS_3               7                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        7      4      6
  1Q LOSS WILD-TYPE     33      7     21
D42V8, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               7                33
  CLUS_2               4                 7
  CLUS_3               6                21

Clustering(43) Variable = 2P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P LOSS MUTATED        2      2      3      6      4
  2P LOSS WILD-TYPE     30     22     12      4      5
D43V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P LOSS MUTATED        1      1      7      2      5
  2P LOSS WILD-TYPE     17     10     13     16      6
D43V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED        3      3      5      5
  2P LOSS WILD-TYPE     21     10     12     18
D43V3, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               3                21
  CLUS_2               3                10
  CLUS_3               5                12
  CLUS_4               5                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        3      7      6
  2P LOSS WILD-TYPE     20     25     16
D43V4, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               3                20
  CLUS_2               7                25
  CLUS_3               6                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        8      0      8
  2P LOSS WILD-TYPE     28     16     18
D43V5, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               8                28
  CLUS_2               0                16
  CLUS_3               8                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        4      4      8
  2P LOSS WILD-TYPE     22      6     34
D43V6, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               4                22
  CLUS_2               4                 6
  CLUS_3               8                34
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        8      1      7
  2P LOSS WILD-TYPE     29     17     16
D43V7, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               8                29
  CLUS_2               1                17
  CLUS_3               7                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        8      4      4
  2P LOSS WILD-TYPE     32      7     23
D43V8, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               8                32
  CLUS_2               4                 7
  CLUS_3               4                23

Clustering(44) Variable = 2Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q LOSS MUTATED        1      2      2      6      4
  2Q LOSS WILD-TYPE     31     22     13      4      5
D44V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q LOSS MUTATED        0      0      7      2      5
  2Q LOSS WILD-TYPE     18     11     13     16      6
D44V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED        1      3      5      5
  2Q LOSS WILD-TYPE     23     10     12     18
D44V3, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               1                23
  CLUS_2               3                10
  CLUS_3               5                12
  CLUS_4               5                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        1      7      6
  2Q LOSS WILD-TYPE     22     25     16
D44V4, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               1                22
  CLUS_2               7                25
  CLUS_3               6                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        6      0      8
  2Q LOSS WILD-TYPE     30     16     18
D44V5, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               6                30
  CLUS_2               0                16
  CLUS_3               8                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        4      4      6
  2Q LOSS WILD-TYPE     22      6     36
D44V6, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               4                22
  CLUS_2               4                 6
  CLUS_3               6                36
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        6      1      7
  2Q LOSS WILD-TYPE     31     17     16
D44V7, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               6                31
  CLUS_2               1                17
  CLUS_3               7                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        6      4      4
  2Q LOSS WILD-TYPE     34      7     23
D44V8, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               6                34
  CLUS_2               4                 7
  CLUS_3               4                23

Clustering(45) Variable = 3P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P LOSS MUTATED        7      3      3      6      1
  3P LOSS WILD-TYPE     25     21     12      4      8
D45V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P LOSS MUTATED        5      1      8      2      1
  3P LOSS WILD-TYPE     13     10     12     16     10
D45V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED        6      1      7      3
  3P LOSS WILD-TYPE     18     12     10     20
D45V3, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               6                18
  CLUS_2               1                12
  CLUS_3               7                10
  CLUS_4               3                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        6      4      7
  3P LOSS WILD-TYPE     17     28     15
D45V4, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               6                17
  CLUS_2               4                28
  CLUS_3               7                15
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       10      3      4
  3P LOSS WILD-TYPE     26     13     22
D45V5, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              10                26
  CLUS_2               3                13
  CLUS_3               4                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        4      1     12
  3P LOSS WILD-TYPE     22      9     30
D45V6, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               4                22
  CLUS_2               1                 9
  CLUS_3              12                30
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       10      5      2
  3P LOSS WILD-TYPE     27     13     21
D45V7, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              10                27
  CLUS_2               5                13
  CLUS_3               2                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       12      1      4
  3P LOSS WILD-TYPE     28     10     23
D45V8, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              12                28
  CLUS_2               1                10
  CLUS_3               4                23

Clustering(46) Variable = 3Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q LOSS MUTATED        9      2      2      6      1
  3Q LOSS WILD-TYPE     23     22     13      4      8
D46V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q LOSS MUTATED        7      1      6      2      1
  3Q LOSS WILD-TYPE     11     10     14     16     10
D46V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        7      0      7      3
  3Q LOSS WILD-TYPE     17     13     10     20
D46V3, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               7                17
  CLUS_2               0                13
  CLUS_3               7                10
  CLUS_4               3                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        8      3      6
  3Q LOSS WILD-TYPE     15     29     16
D46V4, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               8                15
  CLUS_2               3                29
  CLUS_3               6                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       11      3      3
  3Q LOSS WILD-TYPE     25     13     23
D46V5, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              11                25
  CLUS_2               3                13
  CLUS_3               3                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        3      1     13
  3Q LOSS WILD-TYPE     23      9     29
D46V6, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               3                23
  CLUS_2               1                 9
  CLUS_3              13                29
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       11      5      1
  3Q LOSS WILD-TYPE     26     13     22
D46V7, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              11                26
  CLUS_2               5                13
  CLUS_3               1                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       13      1      3
  3Q LOSS WILD-TYPE     27     10     24
D46V8, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              13                27
  CLUS_2               1                10
  CLUS_3               3                24

Clustering(47) Variable = 4P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P LOSS MUTATED        6      0      0      3      1
  4P LOSS WILD-TYPE     26     24     15      7      8
D47V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P LOSS MUTATED        5      1      1      1      1
  4P LOSS WILD-TYPE     13     10     19     17     10
D47V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED        7      0      1      1
  4P LOSS WILD-TYPE     17     13     16     22
D47V3, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               7                17
  CLUS_2               0                13
  CLUS_3               1                16
  CLUS_4               1                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        6      2      1
  4P LOSS WILD-TYPE     17     30     21
D47V4, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               6                17
  CLUS_2               2                30
  CLUS_3               1                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        5      3      1
  4P LOSS WILD-TYPE     31     13     25
D47V5, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               5                31
  CLUS_2               3                13
  CLUS_3               1                25
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        4      0      5
  4P LOSS WILD-TYPE     22     10     37
D47V6, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               4                22
  CLUS_2               0                10
  CLUS_3               5                37
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        5      3      1
  4P LOSS WILD-TYPE     32     15     22
D47V7, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               5                32
  CLUS_2               3                15
  CLUS_3               1                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        5      0      4
  4P LOSS WILD-TYPE     35     11     23
D47V8, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               5                35
  CLUS_2               0                11
  CLUS_3               4                23

Clustering(48) Variable = 4Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q LOSS MUTATED        6      0      1      3      1
  4Q LOSS WILD-TYPE     26     24     14      7      8
D48V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q LOSS MUTATED        6      1      1      1      1
  4Q LOSS WILD-TYPE     12     10     19     17     10
D48V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED        8      0      1      1
  4Q LOSS WILD-TYPE     16     13     16     22
D48V3, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               8                16
  CLUS_2               0                13
  CLUS_3               1                16
  CLUS_4               1                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        7      2      1
  4Q LOSS WILD-TYPE     16     30     21
D48V4, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               7                16
  CLUS_2               2                30
  CLUS_3               1                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        6      3      1
  4Q LOSS WILD-TYPE     30     13     25
D48V5, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               6                30
  CLUS_2               3                13
  CLUS_3               1                25
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        4      0      6
  4Q LOSS WILD-TYPE     22     10     36
D48V6, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               4                22
  CLUS_2               0                10
  CLUS_3               6                36
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        6      3      1
  4Q LOSS WILD-TYPE     31     15     22
D48V7, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               6                31
  CLUS_2               3                15
  CLUS_3               1                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        6      0      4
  4Q LOSS WILD-TYPE     34     11     23
D48V8, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               6                34
  CLUS_2               0                11
  CLUS_3               4                23

Clustering(49) Variable = 5P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P LOSS MUTATED        6      1      1      0      0
  5P LOSS WILD-TYPE     26     23     14     10      9
D49V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P LOSS MUTATED        3      3      1      0      0
  5P LOSS WILD-TYPE     15      8     19     18     11
D49V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        4      2      0      1
  5P LOSS WILD-TYPE     20     11     17     22
D49V3, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               4                20
  CLUS_2               2                11
  CLUS_3               0                17
  CLUS_4               1                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        6      0      1
  5P LOSS WILD-TYPE     17     32     21
D49V4, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               6                17
  CLUS_2               0                32
  CLUS_3               1                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        3      2      2
  5P LOSS WILD-TYPE     33     14     24
D49V5, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               3                33
  CLUS_2               2                14
  CLUS_3               2                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        2      1      4
  5P LOSS WILD-TYPE     24      9     38
D49V6, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               2                24
  CLUS_2               1                 9
  CLUS_3               4                38
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        3      3      1
  5P LOSS WILD-TYPE     34     15     22
D49V7, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               3                34
  CLUS_2               3                15
  CLUS_3               1                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        4      1      2
  5P LOSS WILD-TYPE     36     10     25
D49V8, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               4                36
  CLUS_2               1                10
  CLUS_3               2                25

Clustering(50) Variable = 5Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q LOSS MUTATED        4      2      1      0      0
  5Q LOSS WILD-TYPE     28     22     14     10      9
D50V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q LOSS MUTATED        3      1      1      1      0
  5Q LOSS WILD-TYPE     15     10     19     17     11
D50V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED        4      1      0      1
  5Q LOSS WILD-TYPE     20     12     17     22
D50V3, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               4                20
  CLUS_2               1                12
  CLUS_3               0                17
  CLUS_4               1                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        4      1      1
  5Q LOSS WILD-TYPE     19     31     21
D50V4, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               4                19
  CLUS_2               1                31
  CLUS_3               1                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        4      1      1
  5Q LOSS WILD-TYPE     32     15     25
D50V5, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               4                32
  CLUS_2               1                15
  CLUS_3               1                25
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        1      1      4
  5Q LOSS WILD-TYPE     25      9     38
D50V6, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               1                25
  CLUS_2               1                 9
  CLUS_3               4                38
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        4      1      1
  5Q LOSS WILD-TYPE     33     17     22
D50V7, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               4                33
  CLUS_2               1                17
  CLUS_3               1                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        4      1      1
  5Q LOSS WILD-TYPE     36     10     26
D50V8, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               4                36
  CLUS_2               1                10
  CLUS_3               1                26

Clustering(51) Variable = 6P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P LOSS MUTATED       10      1      3      1      4
  6P LOSS WILD-TYPE     22     23     12      9      5
D51V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P LOSS MUTATED        5      2      3      3      3
  6P LOSS WILD-TYPE     13      9     17     15      8
D51V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED        7      2      2      5
  6P LOSS WILD-TYPE     17     11     15     18
D51V3, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               7                17
  CLUS_2               2                11
  CLUS_3               2                15
  CLUS_4               5                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        7      6      3
  6P LOSS WILD-TYPE     16     26     19
D51V4, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               7                16
  CLUS_2               6                26
  CLUS_3               3                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        9      2      5
  6P LOSS WILD-TYPE     27     14     21
D51V5, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               9                27
  CLUS_2               2                14
  CLUS_3               5                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        4      2     10
  6P LOSS WILD-TYPE     22      8     32
D51V6, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               4                22
  CLUS_2               2                 8
  CLUS_3              10                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        9      3      4
  6P LOSS WILD-TYPE     28     15     19
D51V7, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               9                28
  CLUS_2               3                15
  CLUS_3               4                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       10      2      4
  6P LOSS WILD-TYPE     30      9     23
D51V8, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              10                30
  CLUS_2               2                 9
  CLUS_3               4                23

Clustering(52) Variable = 6Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q LOSS MUTATED       11      1      4      1      5
  6Q LOSS WILD-TYPE     21     23     11      9      4
D52V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q LOSS MUTATED        5      3      3      4      3
  6Q LOSS WILD-TYPE     13      8     17     14      8
D52V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED        8      2      3      5
  6Q LOSS WILD-TYPE     16     11     14     18
D52V3, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               8                16
  CLUS_2               2                11
  CLUS_3               3                14
  CLUS_4               5                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        7      7      4
  6Q LOSS WILD-TYPE     16     25     18
D52V4, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               7                16
  CLUS_2               7                25
  CLUS_3               4                18
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       10      3      5
  6Q LOSS WILD-TYPE     26     13     21
D52V5, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              10                26
  CLUS_2               3                13
  CLUS_3               5                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        5      2     11
  6Q LOSS WILD-TYPE     21      8     31
D52V6, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               5                21
  CLUS_2               2                 8
  CLUS_3              11                31
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       10      4      4
  6Q LOSS WILD-TYPE     27     14     19
D52V7, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              10                27
  CLUS_2               4                14
  CLUS_3               4                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       11      2      5
  6Q LOSS WILD-TYPE     29      9     22
D52V8, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              11                29
  CLUS_2               2                 9
  CLUS_3               5                22

Clustering(53) Variable = 7P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P LOSS MUTATED        3      0      0      1      1
  7P LOSS WILD-TYPE     29     24     15      9      8
D53V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P LOSS MUTATED        2      1      1      0      0
  7P LOSS WILD-TYPE     16     10     19     18     11
D53V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P LOSS MUTATED        2      0      1      1
  7P LOSS WILD-TYPE     22     13     16     22
D53V3, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               2                22
  CLUS_2               0                13
  CLUS_3               1                16
  CLUS_4               1                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        2      1      1
  7P LOSS WILD-TYPE     21     31     21
D53V4, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               2                21
  CLUS_2               1                31
  CLUS_3               1                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        2      0      2
  7P LOSS WILD-TYPE     34     16     24
D53V5, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               2                34
  CLUS_2               0                16
  CLUS_3               2                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        0      2      2
  7P LOSS WILD-TYPE     26      8     40
D53V6, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                 8
  CLUS_3               2                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        2      0      2
  7P LOSS WILD-TYPE     35     18     21
D53V7, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               2                35
  CLUS_2               0                18
  CLUS_3               2                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        2      2      0
  7P LOSS WILD-TYPE     38      9     27
D53V8, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               2                38
  CLUS_2               2                 9
  CLUS_3               0                27

Clustering(54) Variable = 7Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q LOSS MUTATED        4      0      0      1      1
  7Q LOSS WILD-TYPE     28     24     15      9      8
D54V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q LOSS MUTATED        3      1      1      0      0
  7Q LOSS WILD-TYPE     15     10     19     18     11
D54V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED        3      0      1      1
  7Q LOSS WILD-TYPE     21     13     16     22
D54V3, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               3                21
  CLUS_2               0                13
  CLUS_3               1                16
  CLUS_4               1                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        3      1      1
  7Q LOSS WILD-TYPE     20     31     21
D54V4, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               3                20
  CLUS_2               1                31
  CLUS_3               1                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        2      1      2
  7Q LOSS WILD-TYPE     34     15     24
D54V5, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               2                34
  CLUS_2               1                15
  CLUS_3               2                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        0      2      3
  7Q LOSS WILD-TYPE     26      8     39
D54V6, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               0                26
  CLUS_2               2                 8
  CLUS_3               3                39
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        3      0      2
  7Q LOSS WILD-TYPE     34     18     21
D54V7, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               3                34
  CLUS_2               0                18
  CLUS_3               2                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        3      2      0
  7Q LOSS WILD-TYPE     37      9     27
D54V8, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               3                37
  CLUS_2               2                 9
  CLUS_3               0                27

Clustering(55) Variable = 8P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P LOSS MUTATED        7      0      5      4      0
  8P LOSS WILD-TYPE     25     24     10      6      9
D55V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P LOSS MUTATED        2      3      6      1      1
  8P LOSS WILD-TYPE     16      8     14     17     10
D55V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED        5      2      5      1
  8P LOSS WILD-TYPE     19     11     12     22
D55V3, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               5                19
  CLUS_2               2                11
  CLUS_3               5                12
  CLUS_4               1                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        5      2      6
  8P LOSS WILD-TYPE     18     30     16
D55V4, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               5                18
  CLUS_2               2                30
  CLUS_3               6                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        9      2      2
  8P LOSS WILD-TYPE     27     14     24
D55V5, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               9                27
  CLUS_2               2                14
  CLUS_3               2                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        2      0     11
  8P LOSS WILD-TYPE     24     10     31
D55V6, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               2                24
  CLUS_2               0                10
  CLUS_3              11                31
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        9      4      0
  8P LOSS WILD-TYPE     28     14     23
D55V7, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               9                28
  CLUS_2               4                14
  CLUS_3               0                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       11      0      2
  8P LOSS WILD-TYPE     29     11     25
D55V8, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              11                29
  CLUS_2               0                11
  CLUS_3               2                25

Clustering(56) Variable = 8Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q LOSS MUTATED        3      0      5      4      0
  8Q LOSS WILD-TYPE     29     24     10      6      9
D56V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q LOSS MUTATED        2      1      6      0      1
  8Q LOSS WILD-TYPE     16     10     14     18     10
D56V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        3      2      5      0
  8Q LOSS WILD-TYPE     21     11     12     23
D56V3, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               3                21
  CLUS_2               2                11
  CLUS_3               5                12
  CLUS_4               0                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        3      1      6
  8Q LOSS WILD-TYPE     20     31     16
D56V4, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               3                20
  CLUS_2               1                31
  CLUS_3               6                16
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        8      1      1
  8Q LOSS WILD-TYPE     28     15     25
D56V5, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               8                28
  CLUS_2               1                15
  CLUS_3               1                25
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        1      0      9
  8Q LOSS WILD-TYPE     25     10     33
D56V6, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               1                25
  CLUS_2               0                10
  CLUS_3               9                33
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        8      2      0
  8Q LOSS WILD-TYPE     29     16     23
D56V7, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               8                29
  CLUS_2               2                16
  CLUS_3               0                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        9      0      1
  8Q LOSS WILD-TYPE     31     11     26
D56V8, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               9                31
  CLUS_2               0                11
  CLUS_3               1                26

Clustering(57) Variable = 9P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P LOSS MUTATED       15      2      1      2      0
  9P LOSS WILD-TYPE     17     22     14      8      9
D57V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P LOSS MUTATED        9      3      2      4      1
  9P LOSS WILD-TYPE      9      8     18     14     10
D57V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED       14      1      3      1
  9P LOSS WILD-TYPE     10     12     14     22
D57V3, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              14                10
  CLUS_2               1                12
  CLUS_3               3                14
  CLUS_4               1                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       12      4      3
  9P LOSS WILD-TYPE     11     28     19
D57V4, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              12                11
  CLUS_2               4                28
  CLUS_3               3                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        9      8      2
  9P LOSS WILD-TYPE     27      8     24
D57V5, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               9                27
  CLUS_2               8                 8
  CLUS_3               2                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        6      1     12
  9P LOSS WILD-TYPE     20      9     30
D57V6, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               6                20
  CLUS_2               1                 9
  CLUS_3              12                30
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       10      7      2
  9P LOSS WILD-TYPE     27     11     21
D57V7, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              10                27
  CLUS_2               7                11
  CLUS_3               2                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       11      1      7
  9P LOSS WILD-TYPE     29     10     20
D57V8, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              11                29
  CLUS_2               1                10
  CLUS_3               7                20

Clustering(58) Variable = 9Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q LOSS MUTATED        7      2      0      2      0
  9Q LOSS WILD-TYPE     25     22     15      8      9
D58V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q LOSS MUTATED        2      2      2      3      1
  9Q LOSS WILD-TYPE     16      9     18     15     10
D58V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED        6      0      3      1
  9Q LOSS WILD-TYPE     18     13     14     22
D58V3, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               6                18
  CLUS_2               0                13
  CLUS_3               3                14
  CLUS_4               1                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        5      3      2
  9Q LOSS WILD-TYPE     18     29     20
D58V4, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               5                18
  CLUS_2               3                29
  CLUS_3               2                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        5      3      2
  9Q LOSS WILD-TYPE     31     13     24
D58V5, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               5                31
  CLUS_2               3                13
  CLUS_3               2                24
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        3      1      6
  9Q LOSS WILD-TYPE     23      9     36
D58V6, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               3                23
  CLUS_2               1                 9
  CLUS_3               6                36
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        5      3      2
  9Q LOSS WILD-TYPE     32     15     21
D58V7, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               5                32
  CLUS_2               3                15
  CLUS_3               2                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        6      1      3
  9Q LOSS WILD-TYPE     34     10     24
D58V8, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               6                34
  CLUS_2               1                10
  CLUS_3               3                24

Clustering(59) Variable = 10P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P LOSS MUTATED        4      2      2      2      2
  10P LOSS WILD-TYPE     28     22     13      8      7
D59V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P LOSS MUTATED        3      0      4      1      2
  10P LOSS WILD-TYPE     15     11     16     17      9
D59V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED        3      0      4      2
  10P LOSS WILD-TYPE     21     13     13     21
D59V3, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                0                 13
  CLUS_3                4                 13
  CLUS_4                2                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        3      3      3
  10P LOSS WILD-TYPE     20     29     19
D59V4, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                3                 20
  CLUS_2                3                 29
  CLUS_3                3                 19
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        6      1      3
  10P LOSS WILD-TYPE     30     15     23
D59V5, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                6                 30
  CLUS_2                1                 15
  CLUS_3                3                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        4      0      6
  10P LOSS WILD-TYPE     22     10     36
D59V6, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                4                 22
  CLUS_2                0                 10
  CLUS_3                6                 36
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        6      1      3
  10P LOSS WILD-TYPE     31     17     20
D59V7, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                6                 31
  CLUS_2                1                 17
  CLUS_3                3                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        6      0      4
  10P LOSS WILD-TYPE     34     11     23
D59V8, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                6                 34
  CLUS_2                0                 11
  CLUS_3                4                 23

Clustering(60) Variable = 10Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q LOSS MUTATED        4      1      1      2      2
  10Q LOSS WILD-TYPE     28     23     14      8      7
D60V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q LOSS MUTATED        2      0      3      1      2
  10Q LOSS WILD-TYPE     16     11     17     17      9
D60V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED        3      0      3      2
  10Q LOSS WILD-TYPE     21     13     14     21
D60V3, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                0                 13
  CLUS_3                3                 14
  CLUS_4                2                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        3      3      2
  10Q LOSS WILD-TYPE     20     29     20
D60V4, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                3                 20
  CLUS_2                3                 29
  CLUS_3                2                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        4      1      3
  10Q LOSS WILD-TYPE     32     15     23
D60V5, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                4                 32
  CLUS_2                1                 15
  CLUS_3                3                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        4      0      4
  10Q LOSS WILD-TYPE     22     10     38
D60V6, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                4                 22
  CLUS_2                0                 10
  CLUS_3                4                 38
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        4      1      3
  10Q LOSS WILD-TYPE     33     17     20
D60V7, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                4                 33
  CLUS_2                1                 17
  CLUS_3                3                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        4      0      4
  10Q LOSS WILD-TYPE     36     11     23
D60V8, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                4                 36
  CLUS_2                0                 11
  CLUS_3                4                 23

Clustering(61) Variable = 11P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P LOSS MUTATED        5      3      4      7      5
  11P LOSS WILD-TYPE     27     21     11      3      4
D61V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P LOSS MUTATED        4      1     11      2      4
  11P LOSS WILD-TYPE     14     10      9     16      7
D61V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED        5      2      8      7
  11P LOSS WILD-TYPE     19     11      9     16
D61V3, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                5                 19
  CLUS_2                2                 11
  CLUS_3                8                  9
  CLUS_4                7                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        5      9      8
  11P LOSS WILD-TYPE     18     23     14
D61V4, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                5                 18
  CLUS_2                9                 23
  CLUS_3                8                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       11      2      9
  11P LOSS WILD-TYPE     25     14     17
D61V5, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               11                 25
  CLUS_2                2                 14
  CLUS_3                9                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        6      4     12
  11P LOSS WILD-TYPE     20      6     30
D61V6, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                6                 20
  CLUS_2                4                  6
  CLUS_3               12                 30
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       11      3      8
  11P LOSS WILD-TYPE     26     15     15
D61V7, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               11                 26
  CLUS_2                3                 15
  CLUS_3                8                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       12      4      6
  11P LOSS WILD-TYPE     28      7     21
D61V8, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               12                 28
  CLUS_2                4                  7
  CLUS_3                6                 21

Clustering(62) Variable = 11Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q LOSS MUTATED        4      3      3      8      5
  11Q LOSS WILD-TYPE     28     21     12      2      4
D62V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q LOSS MUTATED        2      1     11      2      5
  11Q LOSS WILD-TYPE     16     10      9     16      6
D62V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED        4      2      8      7
  11Q LOSS WILD-TYPE     20     11      9     16
D62V3, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                2                 11
  CLUS_3                8                  9
  CLUS_4                7                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        4      9      8
  11Q LOSS WILD-TYPE     19     23     14
D62V4, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                4                 19
  CLUS_2                9                 23
  CLUS_3                8                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       11      1      9
  11Q LOSS WILD-TYPE     25     15     17
D62V5, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               11                 25
  CLUS_2                1                 15
  CLUS_3                9                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        5      4     12
  11Q LOSS WILD-TYPE     21      6     30
D62V6, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                5                 21
  CLUS_2                4                  6
  CLUS_3               12                 30
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       11      2      8
  11Q LOSS WILD-TYPE     26     16     15
D62V7, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               11                 26
  CLUS_2                2                 16
  CLUS_3                8                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       12      4      5
  11Q LOSS WILD-TYPE     28      7     22
D62V8, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               12                 28
  CLUS_2                4                  7
  CLUS_3                5                 22

Clustering(63) Variable = 12P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P LOSS MUTATED        4      0      0      1      0
  12P LOSS WILD-TYPE     28     24     15      9      9
D63V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P LOSS MUTATED        0      2      1      2      0
  12P LOSS WILD-TYPE     18      9     19     16     11
D63V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED        3      0      1      1
  12P LOSS WILD-TYPE     21     13     16     22
D63V3, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                0                 13
  CLUS_3                1                 16
  CLUS_4                1                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        2      2      1
  12P LOSS WILD-TYPE     21     30     21
D63V4, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                2                 21
  CLUS_2                2                 30
  CLUS_3                1                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        1      3      1
  12P LOSS WILD-TYPE     35     13     25
D63V5, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                1                 35
  CLUS_2                3                 13
  CLUS_3                1                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        2      0      3
  12P LOSS WILD-TYPE     24     10     39
D63V6, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                0                 10
  CLUS_3                3                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        1      4      0
  12P LOSS WILD-TYPE     36     14     23
D63V7, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                1                 36
  CLUS_2                4                 14
  CLUS_3                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        3      0      2
  12P LOSS WILD-TYPE     37     11     25
D63V8, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                3                 37
  CLUS_2                0                 11
  CLUS_3                2                 25

Clustering(64) Variable = 12Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q LOSS MUTATED        4      0      0      0      0
  12Q LOSS WILD-TYPE     28     24     15     10      9
D64V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q LOSS MUTATED        0      2      0      2      0
  12Q LOSS WILD-TYPE     18      9     20     16     11
D64V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED        3      0      0      1
  12Q LOSS WILD-TYPE     21     13     17     22
D64V3, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                0                 13
  CLUS_3                0                 17
  CLUS_4                1                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        2      2      0
  12Q LOSS WILD-TYPE     21     30     22
D64V4, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                2                 21
  CLUS_2                2                 30
  CLUS_3                0                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        1      2      1
  12Q LOSS WILD-TYPE     35     14     25
D64V5, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                1                 35
  CLUS_2                2                 14
  CLUS_3                1                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        2      0      2
  12Q LOSS WILD-TYPE     24     10     40
D64V6, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                0                 10
  CLUS_3                2                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        1      3      0
  12Q LOSS WILD-TYPE     36     15     23
D64V7, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                1                 36
  CLUS_2                3                 15
  CLUS_3                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        2      0      2
  12Q LOSS WILD-TYPE     38     11     25
D64V8, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                0                 11
  CLUS_3                2                 25

Clustering(65) Variable = 13Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q LOSS MUTATED       15      5      5      8      6
  13Q LOSS WILD-TYPE     17     19     10      2      3
D65V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q LOSS MUTATED        9      1     11      5      4
  13Q LOSS WILD-TYPE      9     10      9     13      7
D65V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED       11      3      6      9
  13Q LOSS WILD-TYPE     13     10     11     14
D65V3, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               11                 13
  CLUS_2                3                 10
  CLUS_3                6                 11
  CLUS_4                9                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       10     11      8
  13Q LOSS WILD-TYPE     13     21     14
D65V4, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               10                 13
  CLUS_2               11                 21
  CLUS_3                8                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       14      5     11
  13Q LOSS WILD-TYPE     22     11     15
D65V5, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               14                 22
  CLUS_2                5                 11
  CLUS_3               11                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        9      4     17
  13Q LOSS WILD-TYPE     17      6     25
D65V6, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                9                 17
  CLUS_2                4                  6
  CLUS_3               17                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       15      6      9
  13Q LOSS WILD-TYPE     22     12     14
D65V7, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               15                 22
  CLUS_2                6                 12
  CLUS_3                9                 14
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       17      4      9
  13Q LOSS WILD-TYPE     23      7     18
D65V8, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               17                 23
  CLUS_2                4                  7
  CLUS_3                9                 18

Clustering(66) Variable = 14Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q LOSS MUTATED        8      2      1      2      5
  14Q LOSS WILD-TYPE     24     22     14      8      4
D66V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q LOSS MUTATED        5      1      2      5      3
  14Q LOSS WILD-TYPE     13     10     18     13      8
D66V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED        7      0      1      8
  14Q LOSS WILD-TYPE     17     13     16     15
D66V3, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                7                 17
  CLUS_2                0                 13
  CLUS_3                1                 16
  CLUS_4                8                 15
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        5     11      0
  14Q LOSS WILD-TYPE     18     21     22
D66V4, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                5                 18
  CLUS_2               11                 21
  CLUS_3                0                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        5      4      7
  14Q LOSS WILD-TYPE     31     12     19
D66V5, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                5                 31
  CLUS_2                4                 12
  CLUS_3                7                 19
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        7      3      6
  14Q LOSS WILD-TYPE     19      7     36
D66V6, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                7                 19
  CLUS_2                3                  7
  CLUS_3                6                 36
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        5      4      7
  14Q LOSS WILD-TYPE     32     14     16
D66V7, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                5                 32
  CLUS_2                4                 14
  CLUS_3                7                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        5      3      8
  14Q LOSS WILD-TYPE     35      8     19
D66V8, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                5                 35
  CLUS_2                3                  8
  CLUS_3                8                 19

Clustering(67) Variable = 15Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q LOSS MUTATED        9      1      4      2      5
  15Q LOSS WILD-TYPE     23     23     11      8      4
D67V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q LOSS MUTATED        7      1      5      3      2
  15Q LOSS WILD-TYPE     11     10     15     15      9
D67V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED        9      2      1      6
  15Q LOSS WILD-TYPE     15     11     16     17
D67V3, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                9                 15
  CLUS_2                2                 11
  CLUS_3                1                 16
  CLUS_4                6                 17
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        7      9      2
  15Q LOSS WILD-TYPE     16     23     20
D67V4, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                7                 16
  CLUS_2                9                 23
  CLUS_3                2                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        9      2      7
  15Q LOSS WILD-TYPE     27     14     19
D67V5, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                9                 27
  CLUS_2                2                 14
  CLUS_3                7                 19
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        6      3      9
  15Q LOSS WILD-TYPE     20      7     33
D67V6, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                6                 20
  CLUS_2                3                  7
  CLUS_3                9                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        9      2      7
  15Q LOSS WILD-TYPE     28     16     16
D67V7, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                9                 28
  CLUS_2                2                 16
  CLUS_3                7                 16
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        9      3      6
  15Q LOSS WILD-TYPE     31      8     21
D67V8, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                9                 31
  CLUS_2                3                  8
  CLUS_3                6                 21

Clustering(68) Variable = 16P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P LOSS MUTATED        5      0      1      0      0
  16P LOSS WILD-TYPE     27     24     14     10      9
D68V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P LOSS MUTATED        4      0      0      2      0
  16P LOSS WILD-TYPE     14     11     20     16     11
D68V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED        6      0      0      0
  16P LOSS WILD-TYPE     18     13     17     23
D68V3, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                6                 18
  CLUS_2                0                 13
  CLUS_3                0                 17
  CLUS_4                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        4      2      0
  16P LOSS WILD-TYPE     19     30     22
D68V4, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                4                 19
  CLUS_2                2                 30
  CLUS_3                0                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        2      4      0
  16P LOSS WILD-TYPE     34     12     26
D68V5, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                2                 34
  CLUS_2                4                 12
  CLUS_3                0                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        4      0      2
  16P LOSS WILD-TYPE     22     10     40
D68V6, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                4                 22
  CLUS_2                0                 10
  CLUS_3                2                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        2      4      0
  16P LOSS WILD-TYPE     35     14     23
D68V7, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                2                 35
  CLUS_2                4                 14
  CLUS_3                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        2      0      4
  16P LOSS WILD-TYPE     38     11     23
D68V8, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                0                 11
  CLUS_3                4                 23

Clustering(69) Variable = 16Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q LOSS MUTATED        3      0      2      0      0
  16Q LOSS WILD-TYPE     29     24     13     10      9
D69V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q LOSS MUTATED        4      0      1      0      0
  16Q LOSS WILD-TYPE     14     11     19     18     11
D69V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED        4      1      0      0
  16Q LOSS WILD-TYPE     20     12     17     23
D69V3, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                1                 12
  CLUS_3                0                 17
  CLUS_4                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        4      0      1
  16Q LOSS WILD-TYPE     19     32     21
D69V4, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                4                 19
  CLUS_2                0                 32
  CLUS_3                1                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        3      2      0
  16Q LOSS WILD-TYPE     33     14     26
D69V5, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                3                 33
  CLUS_2                2                 14
  CLUS_3                0                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        2      0      3
  16Q LOSS WILD-TYPE     24     10     39
D69V6, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                0                 10
  CLUS_3                3                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        3      2      0
  16Q LOSS WILD-TYPE     34     16     23
D69V7, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                3                 34
  CLUS_2                2                 16
  CLUS_3                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        3      0      2
  16Q LOSS WILD-TYPE     37     11     25
D69V8, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                3                 37
  CLUS_2                0                 11
  CLUS_3                2                 25

Clustering(70) Variable = 17P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P LOSS MUTATED       13      3      7      8      1
  17P LOSS WILD-TYPE     19     21      8      2      8
D70V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P LOSS MUTATED       11      0     12      4      1
  17P LOSS WILD-TYPE      7     11      8     14     10
D70V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED       14      4      7      3
  17P LOSS WILD-TYPE     10      9     10     20
D70V3, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               14                 10
  CLUS_2                4                  9
  CLUS_3                7                 10
  CLUS_4                3                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       12      6     10
  17P LOSS WILD-TYPE     11     26     12
D70V4, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               12                 11
  CLUS_2                6                 26
  CLUS_3               10                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       17      6      5
  17P LOSS WILD-TYPE     19     10     21
D70V5, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               17                 19
  CLUS_2                6                 10
  CLUS_3                5                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED        8      1     19
  17P LOSS WILD-TYPE     18      9     23
D70V6, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                8                 18
  CLUS_2                1                  9
  CLUS_3               19                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       18      6      4
  17P LOSS WILD-TYPE     19     12     19
D70V7, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               18                 19
  CLUS_2                6                 12
  CLUS_3                4                 19
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       19      1      8
  17P LOSS WILD-TYPE     21     10     19
D70V8, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               19                 21
  CLUS_2                1                 10
  CLUS_3                8                 19

Clustering(71) Variable = 17Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q LOSS MUTATED        7      3      6      8      0
  17Q LOSS WILD-TYPE     25     21      9      2      9
D71V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q LOSS MUTATED        7      1     12      3      1
  17Q LOSS WILD-TYPE     11     10      8     15     10
D71V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED       10      4      7      3
  17Q LOSS WILD-TYPE     14      9     10     20
D71V3, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               10                 14
  CLUS_2                4                  9
  CLUS_3                7                 10
  CLUS_4                3                 20
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        9      5     10
  17Q LOSS WILD-TYPE     14     27     12
D71V4, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                9                 14
  CLUS_2                5                 27
  CLUS_3               10                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       16      3      5
  17Q LOSS WILD-TYPE     20     13     21
D71V5, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               16                 20
  CLUS_2                3                 13
  CLUS_3                5                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        6      1     17
  17Q LOSS WILD-TYPE     20      9     25
D71V6, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                6                 20
  CLUS_2                1                  9
  CLUS_3               17                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       16      4      4
  17Q LOSS WILD-TYPE     21     14     19
D71V7, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               16                 21
  CLUS_2                4                 14
  CLUS_3                4                 19
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       17      1      6
  17Q LOSS WILD-TYPE     23     10     21
D71V8, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               17                 23
  CLUS_2                1                 10
  CLUS_3                6                 21

Clustering(72) Variable = 18P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P LOSS MUTATED       14      5      5      6      7
  18P LOSS WILD-TYPE     18     19     10      4      2
D72V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P LOSS MUTATED        7      3     13      7      4
  18P LOSS WILD-TYPE     11      8      7     11      7
D72V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED       11      4      8     11
  18P LOSS WILD-TYPE     13      9      9     12
D72V3, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               11                 13
  CLUS_2                4                  9
  CLUS_3                8                  9
  CLUS_4               11                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        9     14     11
  18P LOSS WILD-TYPE     14     18     11
D72V4, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                9                 14
  CLUS_2               14                 18
  CLUS_3               11                 11
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       15      6     13
  18P LOSS WILD-TYPE     21     10     13
D72V5, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               15                 21
  CLUS_2                6                 10
  CLUS_3               13                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       10      6     18
  18P LOSS WILD-TYPE     16      4     24
D72V6, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               10                 16
  CLUS_2                6                  4
  CLUS_3               18                 24
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       16      7     11
  18P LOSS WILD-TYPE     21     11     12
D72V7, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               16                 21
  CLUS_2                7                 11
  CLUS_3               11                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       18      6     10
  18P LOSS WILD-TYPE     22      5     17
D72V8, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               18                 22
  CLUS_2                6                  5
  CLUS_3               10                 17

Clustering(73) Variable = 18Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q LOSS MUTATED       13      5      5      5      7
  18Q LOSS WILD-TYPE     19     19     10      5      2
D73V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q LOSS MUTATED        6      4     12      6      4
  18Q LOSS WILD-TYPE     12      7      8     12      7
D73V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED       10      4      7     11
  18Q LOSS WILD-TYPE     14      9     10     12
D73V3, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               10                 14
  CLUS_2                4                  9
  CLUS_3                7                 10
  CLUS_4               11                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED        9     13     10
  18Q LOSS WILD-TYPE     14     19     12
D73V4, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                9                 14
  CLUS_2               13                 19
  CLUS_3               10                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       14      5     13
  18Q LOSS WILD-TYPE     22     11     13
D73V5, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               14                 22
  CLUS_2                5                 11
  CLUS_3               13                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       10      6     16
  18Q LOSS WILD-TYPE     16      4     26
D73V6, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               10                 16
  CLUS_2                6                  4
  CLUS_3               16                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       14      7     11
  18Q LOSS WILD-TYPE     23     11     12
D73V7, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               14                 23
  CLUS_2                7                 11
  CLUS_3               11                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       16      6     10
  18Q LOSS WILD-TYPE     24      5     17
D73V8, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               16                 24
  CLUS_2                6                  5
  CLUS_3               10                 17

Clustering(74) Variable = 19P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P LOSS MUTATED        5      0      0      0      0
  19P LOSS WILD-TYPE     27     24     15     10      9
D74V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P LOSS MUTATED        1      0      0      2      0
  19P LOSS WILD-TYPE     17     11     20     16     11
D74V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED        3      0      0      0
  19P LOSS WILD-TYPE     21     13     17     23
D74V3, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                3                 21
  CLUS_2                0                 13
  CLUS_3                0                 17
  CLUS_4                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        1      2      0
  19P LOSS WILD-TYPE     22     30     22
D74V4, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                 22
  CLUS_2                2                 30
  CLUS_3                0                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        1      2      0
  19P LOSS WILD-TYPE     35     14     26
D74V5, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                 35
  CLUS_2                2                 14
  CLUS_3                0                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        2      0      1
  19P LOSS WILD-TYPE     24     10     41
D74V6, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                0                 10
  CLUS_3                1                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        1      2      0
  19P LOSS WILD-TYPE     36     16     23
D74V7, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                 36
  CLUS_2                2                 16
  CLUS_3                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        1      0      2
  19P LOSS WILD-TYPE     39     11     25
D74V8, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                 39
  CLUS_2                0                 11
  CLUS_3                2                 25

Clustering(75) Variable = 19Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q LOSS MUTATED        4      0      0      0      0
  19Q LOSS WILD-TYPE     28     24     15     10      9
D75V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q LOSS MUTATED        1      1      0      1      0
  19Q LOSS WILD-TYPE     17     10     20     17     11
D75V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        2      0      0      1
  19Q LOSS WILD-TYPE     22     13     17     22
D75V3, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                2                 22
  CLUS_2                0                 13
  CLUS_3                0                 17
  CLUS_4                1                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        2      1      0
  19Q LOSS WILD-TYPE     21     31     22
D75V4, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                2                 21
  CLUS_2                1                 31
  CLUS_3                0                 22
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        1      1      1
  19Q LOSS WILD-TYPE     35     15     25
D75V5, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 35
  CLUS_2                1                 15
  CLUS_3                1                 25
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        1      0      2
  19Q LOSS WILD-TYPE     25     10     40
D75V6, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 25
  CLUS_2                0                 10
  CLUS_3                2                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        1      2      0
  19Q LOSS WILD-TYPE     36     16     23
D75V7, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                1                 36
  CLUS_2                2                 16
  CLUS_3                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        2      0      1
  19Q LOSS WILD-TYPE     38     11     26
D75V8, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                2                 38
  CLUS_2                0                 11
  CLUS_3                1                 26

Clustering(76) Variable = 20P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P LOSS MUTATED        3      0      2      4      0
  20P LOSS WILD-TYPE     29     24     13      6      9
D76V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P LOSS MUTATED        3      0      3      0      1
  20P LOSS WILD-TYPE     15     11     17     18     10
D76V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED        4      1      2      0
  20P LOSS WILD-TYPE     20     12     15     23
D76V3, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                4                 20
  CLUS_2                1                 12
  CLUS_3                2                 15
  CLUS_4                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        4      0      3
  20P LOSS WILD-TYPE     19     32     19
D76V4, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                4                 19
  CLUS_2                0                 32
  CLUS_3                3                 19
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        4      3      0
  20P LOSS WILD-TYPE     32     13     26
D76V5, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                4                 32
  CLUS_2                3                 13
  CLUS_3                0                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        2      0      5
  20P LOSS WILD-TYPE     24     10     37
D76V6, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                2                 24
  CLUS_2                0                 10
  CLUS_3                5                 37
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        4      3      0
  20P LOSS WILD-TYPE     33     15     23
D76V7, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                4                 33
  CLUS_2                3                 15
  CLUS_3                0                 23
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        5      0      2
  20P LOSS WILD-TYPE     35     11     25
D76V8, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                5                 35
  CLUS_2                0                 11
  CLUS_3                2                 25

Clustering(77) Variable = 20Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q LOSS MUTATED        1      0      1      1      0
  20Q LOSS WILD-TYPE     31     24     14      9      9
D77V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q LOSS MUTATED        1      0      1      0      0
  20Q LOSS WILD-TYPE     17     11     19     18     11
D77V2, multiclass
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5J8         TCGA-OR-A5J9         TCGA-OR-A5JB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JC         TCGA-OR-A5JD         TCGA-OR-A5JE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JF         TCGA-OR-A5JG         TCGA-OR-A5JI 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JJ         TCGA-OR-A5JK         TCGA-OR-A5JL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JM         TCGA-OR-A5JO         TCGA-OR-A5JP 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JQ         TCGA-OR-A5JR         TCGA-OR-A5JS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JT         TCGA-OR-A5JV         TCGA-OR-A5JW 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JX         TCGA-OR-A5JY         TCGA-OR-A5JZ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K0         TCGA-OR-A5K1         TCGA-OR-A5K2 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K3         TCGA-OR-A5K4         TCGA-OR-A5K5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K6         TCGA-OR-A5K8         TCGA-OR-A5K9 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KO         TCGA-OR-A5KT         TCGA-OR-A5KU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KV         TCGA-OR-A5KW         TCGA-OR-A5KX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KY         TCGA-OR-A5KZ         TCGA-OR-A5L3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5L4         TCGA-OR-A5L5         TCGA-OR-A5L6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5L8         TCGA-OR-A5L9         TCGA-OR-A5LA 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LB         TCGA-OR-A5LC         TCGA-OR-A5LD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LH 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PK-A5HB 
"20Q LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        1      0      1      0
  20Q LOSS WILD-TYPE     23     13     16     23
D77V3, multiclass
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 2                 75 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5J5         TCGA-OR-A5J6         TCGA-OR-A5J8 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5J9         TCGA-OR-A5JB         TCGA-OR-A5JC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JK         TCGA-OR-A5JL         TCGA-OR-A5JM 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JO         TCGA-OR-A5JP         TCGA-OR-A5JQ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JS         TCGA-OR-A5JT 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JV         TCGA-OR-A5JW         TCGA-OR-A5JX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JY         TCGA-OR-A5JZ         TCGA-OR-A5K0 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K1         TCGA-OR-A5K2         TCGA-OR-A5K3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K8         TCGA-OR-A5K9         TCGA-OR-A5KO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KT         TCGA-OR-A5KU         TCGA-OR-A5KV 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KW         TCGA-OR-A5KX         TCGA-OR-A5KY 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5L3         TCGA-OR-A5L4 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5L5         TCGA-OR-A5L6         TCGA-OR-A5L8 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5L9         TCGA-OR-A5LA         TCGA-OR-A5LB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LC         TCGA-OR-A5LD         TCGA-OR-A5LE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LG         TCGA-OR-A5LH         TCGA-OR-A5LJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LK         TCGA-OR-A5LL         TCGA-OR-A5LM 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LN         TCGA-OR-A5LO         TCGA-OR-A5LP 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LR         TCGA-OR-A5LS         TCGA-OR-A5LT 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OU-A5PI         TCGA-P6-A5OG         TCGA-PA-A5YG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PK-A5H9         TCGA-PK-A5HA         TCGA-PK-A5HB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        1      0      1
  20Q LOSS WILD-TYPE     22     32     21
D77V4, multiclass
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 2                 75 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5J5         TCGA-OR-A5J6         TCGA-OR-A5J8 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5J9         TCGA-OR-A5JB         TCGA-OR-A5JC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JD         TCGA-OR-A5JE         TCGA-OR-A5JF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JG         TCGA-OR-A5JI         TCGA-OR-A5JJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JK         TCGA-OR-A5JL         TCGA-OR-A5JM 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JO         TCGA-OR-A5JP         TCGA-OR-A5JQ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JR         TCGA-OR-A5JS         TCGA-OR-A5JT 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JV         TCGA-OR-A5JW         TCGA-OR-A5JX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JY         TCGA-OR-A5JZ         TCGA-OR-A5K0 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K1         TCGA-OR-A5K2         TCGA-OR-A5K3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K4         TCGA-OR-A5K5         TCGA-OR-A5K6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K8         TCGA-OR-A5K9         TCGA-OR-A5KO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KT         TCGA-OR-A5KU         TCGA-OR-A5KV 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KW         TCGA-OR-A5KX         TCGA-OR-A5KY 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KZ         TCGA-OR-A5L3         TCGA-OR-A5L4 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5L5         TCGA-OR-A5L6         TCGA-OR-A5L8 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5L9         TCGA-OR-A5LA         TCGA-OR-A5LB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LC         TCGA-OR-A5LD         TCGA-OR-A5LE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LG         TCGA-OR-A5LH         TCGA-OR-A5LJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LK         TCGA-OR-A5LL         TCGA-OR-A5LM 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LN         TCGA-OR-A5LO         TCGA-OR-A5LP 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LR         TCGA-OR-A5LS         TCGA-OR-A5LT 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OU-A5PI         TCGA-P6-A5OG         TCGA-PA-A5YG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PK-A5H9         TCGA-PK-A5HA         TCGA-PK-A5HB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        2      0      0
  20Q LOSS WILD-TYPE     34     16     26
D77V5, multiclass
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5J8         TCGA-OR-A5J9         TCGA-OR-A5JB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JC         TCGA-OR-A5JD         TCGA-OR-A5JE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JF         TCGA-OR-A5JG         TCGA-OR-A5JI 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JJ         TCGA-OR-A5JK         TCGA-OR-A5JL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JM         TCGA-OR-A5JO         TCGA-OR-A5JP 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JQ         TCGA-OR-A5JR         TCGA-OR-A5JS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JT         TCGA-OR-A5JV         TCGA-OR-A5JW 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JX         TCGA-OR-A5JY         TCGA-OR-A5JZ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K0         TCGA-OR-A5K1         TCGA-OR-A5K2 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K3         TCGA-OR-A5K4         TCGA-OR-A5K5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K6         TCGA-OR-A5K8         TCGA-OR-A5K9 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KO         TCGA-OR-A5KT         TCGA-OR-A5KU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KV         TCGA-OR-A5KW         TCGA-OR-A5KX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KY         TCGA-OR-A5KZ         TCGA-OR-A5L3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5L4         TCGA-OR-A5L5         TCGA-OR-A5L6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5L8         TCGA-OR-A5L9         TCGA-OR-A5LA 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LB         TCGA-OR-A5LC         TCGA-OR-A5LD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LH 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PK-A5HB 
"20Q LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        0      0      2
  20Q LOSS WILD-TYPE     26     10     40
D77V6, multiclass
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5J8         TCGA-OR-A5J9         TCGA-OR-A5JB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JC         TCGA-OR-A5JD         TCGA-OR-A5JE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JF         TCGA-OR-A5JG         TCGA-OR-A5JI 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JJ         TCGA-OR-A5JK         TCGA-OR-A5JL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JM         TCGA-OR-A5JO         TCGA-OR-A5JP 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JQ         TCGA-OR-A5JR         TCGA-OR-A5JS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JT         TCGA-OR-A5JV         TCGA-OR-A5JW 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JX         TCGA-OR-A5JY         TCGA-OR-A5JZ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K0         TCGA-OR-A5K1         TCGA-OR-A5K2 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K3         TCGA-OR-A5K4         TCGA-OR-A5K5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K6         TCGA-OR-A5K8         TCGA-OR-A5K9 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KO         TCGA-OR-A5KT         TCGA-OR-A5KU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KV         TCGA-OR-A5KW         TCGA-OR-A5KX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KY         TCGA-OR-A5KZ         TCGA-OR-A5L3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5L4         TCGA-OR-A5L5         TCGA-OR-A5L6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5L8         TCGA-OR-A5L9         TCGA-OR-A5LA 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LB         TCGA-OR-A5LC         TCGA-OR-A5LD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LH 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PK-A5HB 
"20Q LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        2      0      0
  20Q LOSS WILD-TYPE     35     18     23
D77V7, multiclass
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5J8         TCGA-OR-A5J9         TCGA-OR-A5JB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JC         TCGA-OR-A5JD         TCGA-OR-A5JE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JF         TCGA-OR-A5JG         TCGA-OR-A5JI 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JJ         TCGA-OR-A5JK         TCGA-OR-A5JL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JM         TCGA-OR-A5JO         TCGA-OR-A5JP 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JQ         TCGA-OR-A5JR         TCGA-OR-A5JS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JT         TCGA-OR-A5JV         TCGA-OR-A5JW 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JX         TCGA-OR-A5JY         TCGA-OR-A5JZ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K0         TCGA-OR-A5K1         TCGA-OR-A5K2 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K3         TCGA-OR-A5K4         TCGA-OR-A5K5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K6         TCGA-OR-A5K8         TCGA-OR-A5K9 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KO         TCGA-OR-A5KT         TCGA-OR-A5KU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KV         TCGA-OR-A5KW         TCGA-OR-A5KX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KY         TCGA-OR-A5KZ         TCGA-OR-A5L3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5L4         TCGA-OR-A5L5         TCGA-OR-A5L6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5L8         TCGA-OR-A5L9         TCGA-OR-A5LA 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LB         TCGA-OR-A5LC         TCGA-OR-A5LD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LH 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PK-A5HB 
"20Q LOSS WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        2      0      0
  20Q LOSS WILD-TYPE     38     11     27
D77V8, multiclass
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 2                 76 
        TCGA-OR-A5J1         TCGA-OR-A5J2         TCGA-OR-A5J3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5J4         TCGA-OR-A5J5         TCGA-OR-A5J6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5J8         TCGA-OR-A5J9         TCGA-OR-A5JB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JC         TCGA-OR-A5JD         TCGA-OR-A5JE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JF         TCGA-OR-A5JG         TCGA-OR-A5JI 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JJ         TCGA-OR-A5JK         TCGA-OR-A5JL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JM         TCGA-OR-A5JO         TCGA-OR-A5JP 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JQ         TCGA-OR-A5JR         TCGA-OR-A5JS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JT         TCGA-OR-A5JV         TCGA-OR-A5JW 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5JX         TCGA-OR-A5JY         TCGA-OR-A5JZ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K0         TCGA-OR-A5K1         TCGA-OR-A5K2 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K3         TCGA-OR-A5K4         TCGA-OR-A5K5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5K6         TCGA-OR-A5K8         TCGA-OR-A5K9 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KO         TCGA-OR-A5KT         TCGA-OR-A5KU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KV         TCGA-OR-A5KW         TCGA-OR-A5KX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5KY         TCGA-OR-A5KZ         TCGA-OR-A5L3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5L4         TCGA-OR-A5L5         TCGA-OR-A5L6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5L8         TCGA-OR-A5L9         TCGA-OR-A5LA 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LB         TCGA-OR-A5LC         TCGA-OR-A5LD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LE         TCGA-OR-A5LG         TCGA-OR-A5LH 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LJ         TCGA-OR-A5LK         TCGA-OR-A5LL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LM         TCGA-OR-A5LN         TCGA-OR-A5LO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LP         TCGA-OR-A5LR         TCGA-OR-A5LS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-OR-A5LT         TCGA-OU-A5PI         TCGA-P6-A5OG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PA-A5YG         TCGA-PK-A5H9         TCGA-PK-A5HA 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PK-A5HB 
"20Q LOSS WILD-TYPE" 

Clustering(78) Variable = 21Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q LOSS MUTATED        8      1      0      2      4
  21Q LOSS WILD-TYPE     24     23     15      8      5
D78V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q LOSS MUTATED        4      0      2      3      3
  21Q LOSS WILD-TYPE     14     11     18     15      8
D78V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED        6      0      2      4
  21Q LOSS WILD-TYPE     18     13     15     19
D78V3, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                6                 18
  CLUS_2                0                 13
  CLUS_3                2                 15
  CLUS_4                4                 19
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        4      7      1
  21Q LOSS WILD-TYPE     19     25     21
D78V4, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                4                 19
  CLUS_2                7                 25
  CLUS_3                1                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        3      4      5
  21Q LOSS WILD-TYPE     33     12     21
D78V5, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                3                 33
  CLUS_2                4                 12
  CLUS_3                5                 21
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        6      2      4
  21Q LOSS WILD-TYPE     20      8     38
D78V6, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                6                 20
  CLUS_2                2                  8
  CLUS_3                4                 38
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        3      4      5
  21Q LOSS WILD-TYPE     34     14     18
D78V7, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                3                 34
  CLUS_2                4                 14
  CLUS_3                5                 18
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        3      2      7
  21Q LOSS WILD-TYPE     37      9     20
D78V8, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                3                 37
  CLUS_2                2                  9
  CLUS_3                7                 20

Clustering(79) Variable = 22Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q LOSS MUTATED       21      7      8      6      6
  22Q LOSS WILD-TYPE     11     17      7      4      3
D79V1, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q LOSS MUTATED       13      4     13      8      3
  22Q LOSS WILD-TYPE      5      7      7     10      8
D79V2, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED       15      7      7     12
  22Q LOSS WILD-TYPE      9      6     10     11
D79V3, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               15                  9
  CLUS_2                7                  6
  CLUS_3                7                 10
  CLUS_4               12                 11
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       14     15     12
  22Q LOSS WILD-TYPE      9     17     10
D79V4, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               14                  9
  CLUS_2               15                 17
  CLUS_3               12                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       20      8     13
  22Q LOSS WILD-TYPE     16      8     13
D79V5, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               20                 16
  CLUS_2                8                  8
  CLUS_3               13                 13
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       12      6     23
  22Q LOSS WILD-TYPE     14      4     19
D79V6, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               12                 14
  CLUS_2                6                  4
  CLUS_3               23                 19
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       21      9     11
  22Q LOSS WILD-TYPE     16      9     12
D79V7, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               21                 16
  CLUS_2                9                  9
  CLUS_3               11                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       21      7     13
  22Q LOSS WILD-TYPE     19      4     14
D79V8, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               21                 19
  CLUS_2                7                  4
  CLUS_3               13                 14

Clustering(80) Variable = XQ LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ LOSS MUTATED       10      1      0      5      1
  XQ LOSS WILD-TYPE     22     23     15      5      8
D80V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ LOSS MUTATED        5      4      3      1      2
  XQ LOSS WILD-TYPE     13      7     17     17      9
D80V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED        9      0      3      3
  XQ LOSS WILD-TYPE     15     13     14     20
D80V3, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               9                15
  CLUS_2               0                13
  CLUS_3               3                14
  CLUS_4               3                20
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        9      3      3
  XQ LOSS WILD-TYPE     14     29     19
D80V4, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               9                14
  CLUS_2               3                29
  CLUS_3               3                19
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        7      4      4
  XQ LOSS WILD-TYPE     29     12     22
D80V5, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               7                29
  CLUS_2               4                12
  CLUS_3               4                22
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        5      1      9
  XQ LOSS WILD-TYPE     21      9     33
D80V6, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               5                21
  CLUS_2               1                 9
  CLUS_3               9                33
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        7      6      2
  XQ LOSS WILD-TYPE     30     12     21
D80V7, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               7                30
  CLUS_2               6                12
  CLUS_3               2                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        9      1      5
  XQ LOSS WILD-TYPE     31     10     22
D80V8, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               9                31
  CLUS_2               1                10
  CLUS_3               5                22
> q(save="no")
