
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/BLCA-TP/8278979/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/BLCA-TP/8142742/BLCA-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=BLCA-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=BLCA-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/BLCA-TP/8142742/BLCA-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/BLCA-TP/8278979/transformed.cor.cli.txt"

nPatients in clinical file=198, in cluster file=250, common to both=195
[1]  80 195
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               45               150 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               45               150 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               62               133 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               62               133 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               58               137 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               58               137 
[1] "2Q GAIN MUTATION ANALYSIS"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               25               170 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               25               170 
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               66               129 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               66               129 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               84               111 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               84               111 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               20               175 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               20               175 
[1] "4Q GAIN MUTATION ANALYSIS"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               12               183 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               12               183 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               78               117 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               78               117 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               26               169 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               26               169 
[1] "6P GAIN MUTATION ANALYSIS"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               27               168 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               27               168 
[1] "6Q GAIN MUTATION ANALYSIS"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               17               178 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               17               178 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               81               114 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               81               114 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               73               122 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               73               122 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               37               158 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               37               158 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               86               109 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               86               109 
[1] "9P GAIN MUTATION ANALYSIS"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               32               163 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               32               163 
[1] "9Q GAIN MUTATION ANALYSIS"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               26               169 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               26               169 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                54                141 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                54                141 
[1] "10Q GAIN MUTATION ANALYSIS"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                17                178 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                17                178 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                19                176 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                19                176 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                25                170 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                25                170 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                61                134 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                61                134 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                45                150 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                45                150 
[1] "13Q GAIN MUTATION ANALYSIS"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                47                148 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                47                148 
[1] "14Q GAIN MUTATION ANALYSIS"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                36                159 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                36                159 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                19                176 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                19                176 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                29                166 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                29                166 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                37                158 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                37                158 
[1] "17P GAIN MUTATION ANALYSIS"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                29                166 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                29                166 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                64                131 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                64                131 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                56                139 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                56                139 
[1] "18Q GAIN MUTATION ANALYSIS"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                30                165 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                30                165 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                38                157 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                38                157 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                64                131 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                64                131 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                99                 96 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                99                 96 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               112                 83 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               112                 83 
[1] "21Q GAIN MUTATION ANALYSIS"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                61                134 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                61                134 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                28                167 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                28                167 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               20               175 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               20               175 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               13               182 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               13               182 
[1] "1Q LOSS MUTATION ANALYSIS"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               15               180 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               15               180 
[1] "2P LOSS MUTATION ANALYSIS"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               19               176 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               19               176 
[1] "2Q LOSS MUTATION ANALYSIS"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               44               151 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               44               151 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               24               171 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               24               171 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               10               185 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               10               185 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               68               127 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               68               127 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               68               127 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               68               127 
[1] "5P LOSS MUTATION ANALYSIS"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               31               164 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               31               164 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               72               123 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               72               123 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               48               147 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               48               147 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               72               123 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               72               123 
[1] "7P LOSS MUTATION ANALYSIS"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                8               187 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                8               187 
[1] "7Q LOSS MUTATION ANALYSIS"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                9               186 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                9               186 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               86               109 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               86               109 
[1] "8Q LOSS MUTATION ANALYSIS"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               19               176 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               19               176 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               83               112 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               83               112 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               75               120 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               75               120 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                38                157 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                38                157 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                64                131 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                64                131 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                73                122 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                73                122 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                56                139 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                56                139 
[1] "12P LOSS MUTATION ANALYSIS"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                19                176 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                19                176 
[1] "12Q LOSS MUTATION ANALYSIS"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                22                173 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                22                173 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                43                152 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                43                152 
[1] "14Q LOSS MUTATION ANALYSIS"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                53                142 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                53                142 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                63                132 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                63                132 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                52                143 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                52                143 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                48                147 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                48                147 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                82                113 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                82                113 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                25                170 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                25                170 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                46                149 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                46                149 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                68                127 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                68                127 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                50                145 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                50                145 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                30                165 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                30                165 
[1] "20P LOSS MUTATION ANALYSIS"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                14                181 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                14                181 
[1] "20Q LOSS MUTATION ANALYSIS"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 5                190 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 5                190 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                28                167 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                28                167 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                73                122 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                73                122 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               38               157 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               38               157 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "DAYSTOLASTKNOWNALIVE"                  
[14] "RADIATIONTHERAPY"                      
[15] "KARNOFSKYPERFORMANCESCORE"             
[16] "HISTOLOGICALTYPE"                      
[17] "RADIATIONS.RADIATION.REGIMENINDICATION"
[18] "NUMBERPACKYEARSSMOKED"                 
[19] "NUMBER.OF.LYMPH.NODES"                 
[20] "GLEASON_SCORE"                         
[21] "PSA_VALUE"                             
[22] "DAYS_TO_PSA"                           
[23] "BATCHNUMBER"                           

Input Data has 23 rows and 195 columns.

[1] "Batch" "23"   
[1] "Last Follow UP"
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
        1219           NA           NA           NA          377           NA 
TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q 
         363           NA           NA           NA           NA           NA 
TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X 
          NA           NA           NA           NA           NA           NA 
TCGA-BT-A2LA TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK 
         522          170          111           NA          390           63 
TCGA-BT-A42E TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
         304           NA           59          700           14           13 
TCGA-CF-A27C TCGA-CF-A3MF TCGA-CF-A3MG TCGA-CF-A3MH TCGA-CF-A3MI TCGA-CF-A47S 
          21           NA           NA           NA           NA            4 
TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YN 
           2            3            2            3            3           NA 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 
          NA          219          166          158          496           NA 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB 
          77           NA          955          560          578          271 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
        3981         3420          491          536          475           55 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL 
         322           NA         3767         2656           67          121 
TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU 
         238           NA          319         1529          648          609 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 
          NA          252           NA         4283         1460           NA 
TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-DK-A6B5 
        1952         1476         1966         2049          477          982 
TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 
         646         1326           NA          796          750            3 
TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A519 TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A5KF 
          15           16           NA           18           17           20 
TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 
          42           25           37          392          477           NA 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA 
         209           NA          378          363          483         1397 
TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP 
          NA          683          501          390           NA          401 
TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43S 
          NA           NA           60          699          454          455 
TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT 
         454          110          369          407         1130           NA 
TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C0 
         209           NA           NA          208           NA          209 
TCGA-FD-A5C1 TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 
        1511           81          147           NA          194          462 
TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EF 
         217          106          124           NA          197         1884 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB 
         931          173           NA         1072          525          214 
TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB 
          NA           26           88           68          481          137 
TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP 
         484          428          540           34          235           64 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R 
          95          638           67          195          233          344 
TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QG 
         134          195          187          173          232           NA 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO 
         237          126          203          195          580           46 
TCGA-H4-A2HQ TCGA-HQ-A2OE TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A4AB 
         205           NA          266          105          142           76 
TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LC-A66R TCGA-LT-A5Z6 
         197          320           55          130          193          105 
TCGA-MV-A51V TCGA-PQ-A6FI TCGA-PQ-A6FN 
         410          372          507 
Variable 1:'AGE':	nDistinctValues=46,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=55,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=131,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=11,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=14,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 14:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=8,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 16:'HISTOLOGICAL.TYPE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 17:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 18:'NUMBERPACKYEARSSMOKED':	nDistinctValues=44,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 19:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=13,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'GLEASON_SCORE':	nDistinctValues=4,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 21:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 22:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 23:'BATCH.NUMBER':	nDistinctValues=21,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                         "NEOPLASM.DISEASESTAGE"      
 [3] "PATHOLOGY.T.STAGE"           "PATHOLOGY.N.STAGE"          
 [5] "PATHOLOGY.M.STAGE"           "GENDER"                     
 [7] "KARNOFSKY.PERFORMANCE.SCORE" "NUMBERPACKYEARSSMOKED"      
 [9] "NUMBER.OF.LYMPH.NODES"       "GLEASON_SCORE"              
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 195 columns, 1 survival variables, and 10 non-survival variables.
AGE, nv=46, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=4, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=5, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T0 T1 T2 T3 T4 
 1  1 57 90 28 
[1] "table(vv)"
vv
T0+T1+T2       T3       T4 
      59       90       28 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
T0 T1 T2 T3 T4 
 1  1 57 90 28 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


T0+T1+T2       T3       T4 
      59       90       28 
PATHOLOGY.N.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
120  18  33   7 
[1] "table(vv)"
vv
 N0  N1  N2  N3 
120  18  33   7 
$ClinVariableName
[1] "PATHOLOGY.N.STAGE"

$Table
vv
 N0  N1  N2  N3 
120  18  33   7 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 N0  N1  N2  N3 
120  18  33   7 
PATHOLOGY.M.STAGE, nv=3, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=8, binary=FALSE, numeric=TRUE
NUMBERPACKYEARSSMOKED, nv=44, binary=FALSE, numeric=TRUE
NUMBER.OF.LYMPH.NODES, nv=13, binary=FALSE, numeric=TRUE
GLEASON_SCORE, nv=4, binary=FALSE, numeric=TRUE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
D1V1, survival
                   sevent
clus2                 0   1
  1P GAIN MUTATED    25  19
  1P GAIN WILD-TYPE 107  37
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               44               144 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               19                37 
$`1P GAIN MUTATED`
TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A2LA TCGA-BT-A3PJ TCGA-C4-A0F0 TCGA-CU-A0YN 
        5.06        14.89        17.16        12.82         1.94        12.92 
TCGA-CU-A5W6 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN 
        1.84         7.79       123.85         3.98         7.82         8.22 
TCGA-DK-A3IU TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-E5-A4U1 TCGA-E7-A541 TCGA-E7-A5KE 
       20.02        17.98        64.18        26.17         0.59         0.56 
TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SO TCGA-FD-A3SR 
        8.94         4.01        45.93        24.30         5.52        19.79 
TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A5BU TCGA-FD-A5C0 TCGA-FJ-A3Z7 TCGA-FJ-A3ZF 
        1.97        22.98         6.87         6.87        15.19         4.08 
TCGA-FT-A3EE TCGA-G2-A3IE TCGA-GC-A3BM TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3YS 
        3.25        20.12         2.89        15.81         4.50         1.12 
TCGA-GD-A3OS TCGA-GU-A42P TCGA-GV-A3JV TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QI 
       20.98         6.41         4.41         5.69         7.63         4.14 
TCGA-LT-A5Z6 TCGA-MV-A51V 
        3.45        13.48 

$`1P GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q 
       11.93        19.04        32.84        12.16        17.88        19.50 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LB TCGA-BT-A2LD 
       14.96         5.06         8.35         8.25         5.59         3.65 
TCGA-BT-A3PH TCGA-BT-A3PK TCGA-BT-A42E TCGA-C4-A0EZ TCGA-C4-A0F6 TCGA-CF-A1HR 
        4.67         2.07         9.99         8.98        23.01         0.46 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W 
        0.43         0.69         0.13         0.07         0.10         0.07 
TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU 
        0.10         0.10         4.90         7.20         5.46         5.19 
TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
       16.31         2.53         2.14        31.40        18.41        19.00 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        8.91       130.88       112.44        16.14        17.62        15.62 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IQ TCGA-DK-A3IS 
        1.81        10.59        87.32         2.20        10.49        50.27 
TCGA-DK-A3IT TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 
       21.30         9.67         8.28        10.55       140.81        48.00 
TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-DK-A6B6 
       48.53        64.64        67.36        15.68        32.28        21.24 
TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4IJ TCGA-E7-A4XJ 
       43.59        15.35        24.66         0.10         0.49         0.53 
TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 
        0.66         1.38         0.82         1.22        12.89        15.68 
TCGA-FD-A3B6 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3SL TCGA-FD-A3SM 
        6.87        12.43        11.93        15.88        22.45        16.47 
TCGA-FD-A3SN TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U 
       12.82        13.18        46.78        14.93        14.96        14.93 
TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BV 
        3.62        12.13        13.38        37.15        11.01         5.36 
TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C1 TCGA-FD-A62N TCGA-FD-A62O 
        5.69         6.84        27.45        49.68         2.66         4.83 
TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FT-A61P TCGA-G2-A2EF 
        6.28         6.38         7.13         3.48         6.48        61.94 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB 
       30.61         5.69        26.93        35.24        17.26         7.04 
TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GD-A2C5 
        0.85         2.24        15.91        14.07        17.75         7.73 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A6C6 TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JW 
        2.10         3.12         2.20         7.66        11.31         6.41 
TCGA-GV-A3JX TCGA-GV-A3QH TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO 
        6.15         7.79         6.67         6.41        19.07         1.51 
TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A4AC 
        6.74         8.75         3.45         4.67         2.50         6.48 
TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LC-A66R TCGA-PQ-A6FI TCGA-PQ-A6FN 
       10.52         1.81         4.27         6.35        12.23        16.67 

  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             0.56              0.07 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
           123.85            140.81 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             7.71              8.83 
[1] "0.6 - 123.8 (7.7)" "0.1 - 140.8 (8.8)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
[1] "hr=" "1.8"
D1V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  1P GAIN MUTATED         0       14        14       17
  1P GAIN WILD-TYPE       2       51        52       41
D1V3, multiclass
           clus
vv          1P GAIN MUTATED 1P GAIN WILD-TYPE
  STAGE I                 0                 2
  STAGE II               14                51
  STAGE III              14                52
  STAGE IV               17                41
                   vv
clus                T0+T1+T2 T3 T4
  1P GAIN MUTATED         13 21  7
  1P GAIN WILD-TYPE       46 69 21
D1V4, multiclass
          clus
vv         1P GAIN MUTATED 1P GAIN WILD-TYPE
  T0+T1+T2              13                46
  T3                    21                69
  T4                     7                21
                   vv
clus                N0 N1 N2 N3
  1P GAIN MUTATED   24  7  7  4
  1P GAIN WILD-TYPE 96 11 26  3
D1V5, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  N0              24                96
  N1               7                11
  N2               7                26
  N3               4                 3
                   vv
clus                M0 M1 MX
  1P GAIN MUTATED   24  0 21
  1P GAIN WILD-TYPE 79  5 65
D1V6, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  M0              24                79
  M1               0                 5
  MX              21                65
D1V7, binary
                   cls
clus                  0   1
  1P GAIN MUTATED     8  37
  1P GAIN WILD-TYPE  40 110
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      8   37
  1P GAIN WILD-TYPE   40  110
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  FEMALE               8                40
  MALE                37               110
D1V8, continuous
D1V9, continuous
D1V10, continuous
D1V11, continuous

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
D2V1, survival
                   sevent
clus2                0  1
  1Q GAIN MUTATED   39 21
  1Q GAIN WILD-TYPE 93 35
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               60               128 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               21                35 
$`1Q GAIN MUTATED`
TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A2LA TCGA-BT-A2LD 
        2.66         6.74        14.89         5.06        17.16         3.65 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A47V TCGA-CU-A0YN TCGA-CU-A3KJ TCGA-CU-A5W6 
        8.98         1.94         0.10        12.92         5.46         1.84 
TCGA-DK-A1A3 TCGA-DK-A1AD TCGA-DK-A2I2 TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN 
        2.53       112.44         7.79         3.98         7.82         8.22 
TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6B1 TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 
       17.98        64.18        67.36        26.17        24.66         0.10 
TCGA-E7-A541 TCGA-E7-A5KF TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3NA TCGA-FD-A3SJ 
        0.59         0.66         8.94         4.01        45.93        24.30 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SO TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N 
       22.45        16.47         5.52        19.79         1.97        22.98 
TCGA-FD-A43X TCGA-FD-A5BU TCGA-FD-A5C0 TCGA-FD-A5C1 TCGA-FJ-A3ZE TCGA-FT-A3EE 
        3.62         6.87         6.87        49.68         3.48         3.25 
TCGA-GC-A3BM TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 
        2.89        15.81         4.50        17.75         1.12         7.73 
TCGA-GD-A3OP TCGA-GD-A3OS TCGA-GU-A42P TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ 
        2.10        20.98         6.41         4.41         6.15         5.69 
TCGA-GV-A3QI TCGA-K4-A3WS TCGA-LC-A66R TCGA-LT-A5Z6 TCGA-MV-A51V TCGA-PQ-A6FI 
        4.14         8.75         6.35         3.45        13.48        12.23 

$`1Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A5ZZ TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       40.08         7.33        12.39         6.58        11.93        19.04 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U 
       32.84        12.16        17.88        19.50         5.06        14.96 
TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LB TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK 
        8.35         8.25         5.59         4.67        12.82         2.07 
TCGA-BT-A42E TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A47S 
        9.99        23.01         0.46         0.43         0.69         0.13 
TCGA-CF-A47T TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YO TCGA-CU-A0YR 
        0.07         0.07         0.10         0.10         4.90         7.20 
TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
        5.19        16.31         2.14        31.40        18.41        19.00 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
        8.91       130.88        16.14        17.62        15.62         1.81 
TCGA-DK-A2I1 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IQ TCGA-DK-A3IS 
       10.59       123.85        87.32         2.20        10.49        50.27 
TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
       21.30        20.02         9.67         8.28        10.55       140.81 
TCGA-DK-A3X1 TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-DK-A6B6 
       48.00        48.53        64.64        15.68        32.28        21.24 
TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A5KE TCGA-E7-A677 
       43.59        15.35         0.49         0.53         0.56         1.38 
TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3B8 
        0.82         1.22        12.89        15.68         6.87        12.43 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3SN TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A43P 
       11.93        15.88        12.82        13.18        46.78        14.93 
TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT 
       14.96        14.93        12.13        13.38        37.15        11.01 
TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A62N TCGA-FD-A62O 
        5.36         5.69         6.84        27.45         2.66         4.83 
TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZF TCGA-FT-A61P 
        6.28         6.38        15.19         7.13         4.08         6.48 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
       61.94        30.61         5.69        26.93        35.24        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3RC TCGA-GC-A3RD 
        7.04        20.12         0.85         2.24        15.91        14.07 
TCGA-GD-A3OQ TCGA-GD-A6C6 TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JW TCGA-GV-A3QF 
        3.12         2.20         7.66        11.31         6.41         7.63 
TCGA-GV-A3QH TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ 
        7.79         6.67         6.41        19.07         1.51         6.74 
TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6FZ 
        3.45         4.67         2.50         6.48        10.52         1.81 
TCGA-K4-A6MB TCGA-PQ-A6FN 
        4.27        16.67 

  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
             0.10              0.07 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
           112.44            140.81 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
            6.805            10.505 
[1] "0.1 - 112.4 (6.8)"  "0.1 - 140.8 (10.5)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D2V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  1Q GAIN MUTATED         0       18        17       26
  1Q GAIN WILD-TYPE       2       47        49       32
D2V3, multiclass
           clus
vv          1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  STAGE I                 0                 2
  STAGE II               18                47
  STAGE III              17                49
  STAGE IV               26                32
                   vv
clus                T0+T1+T2 T3 T4
  1Q GAIN MUTATED         18 29 11
  1Q GAIN WILD-TYPE       41 61 17
D2V4, multiclass
          clus
vv         1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  T0+T1+T2              18                41
  T3                    29                61
  T4                    11                17
                   vv
clus                N0 N1 N2 N3
  1Q GAIN MUTATED   32  8 15  4
  1Q GAIN WILD-TYPE 88 10 18  3
D2V5, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  N0              32                88
  N1               8                10
  N2              15                18
  N3               4                 3
                   vv
clus                M0 M1 MX
  1Q GAIN MUTATED   30  4 28
  1Q GAIN WILD-TYPE 73  1 58
D2V6, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  M0              30                73
  M1               4                 1
  MX              28                58
D2V7, binary
                   cls
clus                 0  1
  1Q GAIN MUTATED   13 49
  1Q GAIN WILD-TYPE 35 98
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     13   49
  1Q GAIN WILD-TYPE   35   98
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  FEMALE              13                35
  MALE                49                98
D2V8, continuous
D2V9, continuous
D2V10, continuous
D2V11, continuous

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
D3V1, survival
                   sevent
clus2                0  1
  2P GAIN MUTATED   39 17
  2P GAIN WILD-TYPE 93 39
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               56               132 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               17                39 
$`2P GAIN MUTATED`
TCGA-BL-A5ZZ TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20V TCGA-BT-A20W 
       12.39        11.93        19.04        32.84         5.06         8.35 
TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PJ TCGA-C4-A0EZ TCGA-C4-A0F6 TCGA-CF-A1HS 
        5.59         3.65        12.82         8.98        23.01         0.43 
TCGA-CF-A47X TCGA-CU-A0YR TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AC 
        0.10         7.20         2.53        31.40        18.41       130.88 
TCGA-DK-A1AD TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IM 
      112.44        10.59         7.79        87.32         2.20         7.82 
TCGA-DK-A3IN TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6B1 TCGA-DK-A6B2 
        8.22        48.00        17.98        64.18        67.36        15.68 
TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E7-A541 TCGA-FD-A3NA TCGA-FD-A3SQ TCGA-FD-A3SR 
       21.24        43.59         0.59        45.93        46.78        19.79 
TCGA-FD-A43P TCGA-FD-A43U TCGA-FD-A5BZ TCGA-FD-A62O TCGA-FJ-A3ZF TCGA-FT-A3EE 
       14.93        14.93        27.45         4.83         4.08         3.25 
TCGA-FT-A61P TCGA-G2-A3VY TCGA-GC-A3RD TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OS 
        6.48         0.85        14.07         7.73         2.10        20.98 
TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QK TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WV 
        7.63         7.79         6.67         6.74         8.75         4.67 
TCGA-K4-A6FZ TCGA-K4-A6MB 
        1.81         4.27 

$`2P GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20O 
       40.08         7.33         2.66         6.74         6.58        12.16 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20X 
       17.88        19.50         5.06        14.89        14.96         8.25 
TCGA-BT-A2LA TCGA-BT-A3PH TCGA-BT-A3PK TCGA-BT-A42E TCGA-C4-A0F0 TCGA-CF-A1HR 
       17.16         4.67         2.07         9.99         1.94         0.46 
TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47Y 
        0.69         0.13         0.07         0.10         0.07         0.10 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 
       12.92         4.90         5.46         5.19        16.31         1.84 
TCGA-DK-A1A5 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        2.14        19.00         8.91        16.14        17.62        15.62 
TCGA-DK-A2HX TCGA-DK-A2I4 TCGA-DK-A3IL TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT 
        1.81       123.85         3.98        10.49        50.27        21.30 
TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A6AW 
       20.02         9.67         8.28        10.55       140.81        48.53 
TCGA-DK-A6B0 TCGA-DK-A6B5 TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 
       64.64        32.28        15.35        26.17        24.66         0.10 
TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 
        0.49         0.53         0.56         0.66         1.38         0.82 
TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 
        1.22        12.89        15.68         8.94         6.87         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM 
       12.43        11.93        15.88        24.30        22.45        16.47 
TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43S 
       12.82         5.52        13.18         1.97        22.98        14.96 
TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU 
        3.62        12.13        13.38        37.15        11.01         6.87 
TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5C0 TCGA-FD-A5C1 TCGA-FD-A62N 
        5.36         5.69         6.84         6.87        49.68         2.66 
TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-G2-A2EF 
        6.28         6.38        15.19         7.13         3.48        61.94 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB 
       30.61         5.69        26.93        35.24        17.26         7.04 
TCGA-G2-A3IE TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC 
       20.12         2.89         2.24        15.81         4.50        15.91 
TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A3OQ TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GU-A42Q 
       17.75         1.12         3.12         2.20         6.41         7.66 
TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QI 
       11.31         4.41         6.41         6.15         5.69         4.14 
TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-K4-A3WU TCGA-K4-A4AB TCGA-K4-A4AC 
        6.41        19.07         1.51         3.45         2.50         6.48 
TCGA-K4-A54R TCGA-LC-A66R TCGA-LT-A5Z6 TCGA-MV-A51V TCGA-PQ-A6FI TCGA-PQ-A6FN 
       10.52         6.35         3.45        13.48        12.23        16.67 

  2P GAIN MUTATED 2P GAIN WILD-TYPE 
             0.10              0.07 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
           130.88            140.81 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
            8.865             7.495 
[1] "0.1 - 130.9 (8.9)" "0.1 - 140.8 (7.5)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D3V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  2P GAIN MUTATED         0       15        16       25
  2P GAIN WILD-TYPE       2       50        50       33
D3V3, multiclass
           clus
vv          2P GAIN MUTATED 2P GAIN WILD-TYPE
  STAGE I                 0                 2
  STAGE II               15                50
  STAGE III              16                50
  STAGE IV               25                33
                   vv
clus                T0+T1+T2 T3 T4
  2P GAIN MUTATED         16 28  8
  2P GAIN WILD-TYPE       43 62 20
D3V4, multiclass
          clus
vv         2P GAIN MUTATED 2P GAIN WILD-TYPE
  T0+T1+T2              16                43
  T3                    28                62
  T4                     8                20
                   vv
clus                N0 N1 N2 N3
  2P GAIN MUTATED   26  8 17  2
  2P GAIN WILD-TYPE 94 10 16  5
D3V5, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  N0              26                94
  N1               8                10
  N2              17                16
  N3               2                 5
                   vv
clus                M0 M1 MX
  2P GAIN MUTATED   30  2 25
  2P GAIN WILD-TYPE 73  3 61
D3V6, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  M0              30                73
  M1               2                 3
  MX              25                61
D3V7, binary
                   cls
clus                  0   1
  2P GAIN MUTATED    24  34
  2P GAIN WILD-TYPE  24 113
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED     24   34
  2P GAIN WILD-TYPE   24  113
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  FEMALE              24                24
  MALE                34               113
D3V8, continuous
D3V9, continuous
D3V10, continuous
D3V11, continuous

Clustering(4) Variable = 2Q GAIN MUTATION ANALYSIS
D4V1, survival
                   sevent
clus2                 0   1
  2Q GAIN MUTATED    16   8
  2Q GAIN WILD-TYPE 116  48
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               24               164 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                8                48 
$`2Q GAIN MUTATED`
TCGA-BL-A5ZZ TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A2LB TCGA-CU-A0YR TCGA-DK-A1A6 
       12.39        19.04        32.84         5.59         7.20        31.40 
TCGA-DK-A1AD TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A3IN TCGA-E5-A2PC TCGA-FD-A3NA 
      112.44        10.59         7.79         8.22        43.59        45.93 
TCGA-FD-A3SQ TCGA-FD-A62O TCGA-FJ-A3ZF TCGA-G2-A3VY TCGA-GD-A3OS TCGA-GV-A3QF 
       46.78         4.83         4.08         0.85        20.98         7.63 
TCGA-GV-A3QH TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WV TCGA-K4-A6FZ 
        7.79        19.07         6.74         8.75         4.67         1.81 

$`2Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       40.08         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U 
       12.16        17.88        19.50         5.06        14.89        14.96 
TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH 
        5.06         8.35         8.25        17.16         3.65         4.67 
TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-BT-A42E TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 
       12.82         2.07         9.99         8.98         1.94        23.01 
TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V 
        0.46         0.43         0.69         0.13         0.07         0.10 
TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A3KJ 
        0.07         0.10         0.10        12.92         4.90         5.46 
TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A7 
        5.19        16.31         1.84         2.53         2.14        18.41 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
       19.00         8.91       130.88        16.14        17.62        15.62 
TCGA-DK-A2HX TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM 
        1.81       123.85        87.32         2.20         3.98         7.82 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW 
       10.49        50.27        21.30        20.02         9.67         8.28 
TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6AW 
       10.55       140.81        48.00        17.98        64.18        48.53 
TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-DK-A6B6 TCGA-E5-A4TZ 
       64.64        67.36        15.68        32.28        21.24        15.35 
TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A541 
       26.17        24.66         0.10         0.49         0.53         0.59 
TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B3 
        0.56         0.66         1.38         0.82         1.22        12.89 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
       15.68         8.94         6.87         4.01        12.43        11.93 
TCGA-FD-A3N6 TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO 
       15.88        24.30        22.45        16.47        12.82         5.52 
TCGA-FD-A3SP TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43S 
       13.18        19.79         1.97        22.98        14.93        14.96 
TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT 
       14.93         3.62        12.13        13.38        37.15        11.01 
TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C0 
        6.87         5.36         5.69         6.84        27.45         6.87 
TCGA-FD-A5C1 TCGA-FD-A62N TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 
       49.68         2.66         6.28         6.38        15.19         7.13 
TCGA-FJ-A3ZE TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK 
        3.48         3.25         6.48        61.94        30.61         5.69 
TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3BM 
       26.93        35.24        17.26         7.04        20.12         2.89 
TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC 
        2.24        15.81         4.50        15.91        14.07        17.75 
TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A6C6 TCGA-GU-A42P 
        1.12         7.73         2.10         3.12         2.20         6.41 
TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ 
        7.66        11.31         4.41         6.41         6.15         5.69 
TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-H4-A2HO TCGA-K4-A3WU TCGA-K4-A4AB 
        4.14         6.67         6.41         1.51         3.45         2.50 
TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6MB TCGA-LC-A66R TCGA-LT-A5Z6 TCGA-MV-A51V 
        6.48        10.52         4.27         6.35         3.45        13.48 
TCGA-PQ-A6FI TCGA-PQ-A6FN 
       12.23        16.67 

  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
             0.85              0.07 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
           112.44            140.81 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
            8.485             8.265 
[1] "0.8 - 112.4 (8.5)" "0.1 - 140.8 (8.3)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D4V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  2Q GAIN MUTATED         0        9         8        8
  2Q GAIN WILD-TYPE       2       56        58       50
D4V3, multiclass
           clus
vv          2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  STAGE I                 0                 2
  STAGE II                9                56
  STAGE III               8                58
  STAGE IV                8                50
                   vv
clus                T0+T1+T2 T3 T4
  2Q GAIN MUTATED          9  9  2
  2Q GAIN WILD-TYPE       50 81 26
D4V4, multiclass
          clus
vv         2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  T0+T1+T2               9                50
  T3                     9                81
  T4                     2                26
                   vv
clus                 N0  N1  N2  N3
  2Q GAIN MUTATED    13   2   5   1
  2Q GAIN WILD-TYPE 107  16  28   6
D4V5, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  N0              13               107
  N1               2                16
  N2               5                28
  N3               1                 6
                   vv
clus                M0 M1 MX
  2Q GAIN MUTATED    9  1 14
  2Q GAIN WILD-TYPE 94  4 72
D4V6, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  M0               9                94
  M1               1                 4
  MX              14                72
D4V7, binary
                   cls
clus                  0   1
  2Q GAIN MUTATED     9  16
  2Q GAIN WILD-TYPE  39 131
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      9   16
  2Q GAIN WILD-TYPE   39  131
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  FEMALE               9                39
  MALE                16               131
D4V8, continuous
D4V9, continuous
D4V10, continuous
D4V11, continuous

Clustering(5) Variable = 3P GAIN MUTATION ANALYSIS
D5V1, survival
                   sevent
clus2                0  1
  3P GAIN MUTATED   42 20
  3P GAIN WILD-TYPE 90 36
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               62               126 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               20                36 
$`3P GAIN MUTATED`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A5ZZ TCGA-BT-A20J TCGA-BT-A20W TCGA-BT-A2LD 
        7.33         2.66        12.39        19.04         8.35         3.65 
TCGA-BT-A3PH TCGA-BT-A3PK TCGA-CF-A1HR TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3YL 
        4.67         2.07         0.46         4.90         7.20        16.31 
TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AC TCGA-DK-A1AD 
        1.84         2.53         2.14        31.40       130.88       112.44 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IN TCGA-DK-A3IS TCGA-DK-A3IU 
        1.81        10.59        87.32         8.22        50.27        20.02 
TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E5-A4U1 
       17.98        64.18        21.24        43.59        15.35        26.17 
TCGA-E7-A3Y1 TCGA-E7-A5KE TCGA-FD-A43U TCGA-FD-A5C0 TCGA-FD-A62O TCGA-FD-A62P 
        0.10         0.56        14.93         6.87         4.83         6.28 
TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ 
        3.48         4.08         3.25         6.48        61.94        30.61 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GD-A3OP 
       35.24        17.26         0.85         2.24        15.81         2.10 
TCGA-GD-A3OS TCGA-GU-A42P TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3QF TCGA-GV-A3QH 
       20.98         6.41         4.41         6.41         7.63         7.79 
TCGA-GV-A3QK TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        6.67        19.07         6.74         8.75         3.45         4.67 
TCGA-K4-A6MB TCGA-PQ-A6FI 
        4.27        12.23 

$`3P GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20N TCGA-BT-A20O 
       40.08         6.74         6.58        11.93        32.84        12.16 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V 
       17.88        19.50         5.06        14.89        14.96         5.06 
TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LB TCGA-BT-A3PJ TCGA-BT-A42E TCGA-C4-A0EZ 
        8.25        17.16         5.59        12.82         9.99         8.98 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T 
        1.94        23.01         0.43         0.69         0.13         0.07 
TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A3KJ 
        0.10         0.07         0.10         0.10        12.92         5.46 
TCGA-CU-A3QU TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AE TCGA-DK-A1AF 
        5.19        18.41        19.00         8.91        16.14        17.62 
TCGA-DK-A1AG TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM 
       15.62         7.79       123.85         2.20         3.98         7.82 
TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
       10.49        21.30         9.67         8.28        10.55       140.81 
TCGA-DK-A3X1 TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-DK-A6B5 
       48.00        48.53        64.64        67.36        15.68        32.28 
TCGA-E7-A3X6 TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KF TCGA-E7-A677 
       24.66         0.49         0.53         0.59         0.66         1.38 
TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
        0.82         1.22        12.89        15.68         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ 
        4.01        12.43        11.93        15.88        45.93        24.30 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ 
       22.45        16.47        12.82         5.52        13.18        46.78 
TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43X 
       19.79         1.97        22.98        14.93        14.96         3.62 
TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BV 
       12.13        13.38        37.15        11.01         6.87         5.36 
TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C1 TCGA-FD-A62N TCGA-FD-A62S 
        5.69         6.84        27.45        49.68         2.66         6.38 
TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A3IB TCGA-G2-A3IE 
       15.19         7.13         5.69        26.93         7.04        20.12 
TCGA-GC-A3BM TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS 
        2.89         4.50        15.91        14.07        17.75         1.12 
TCGA-GD-A2C5 TCGA-GD-A3OQ TCGA-GD-A6C6 TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JX 
        7.73         3.12         2.20         7.66        11.31         6.15 
TCGA-GV-A3JZ TCGA-GV-A3QI TCGA-GV-A40E TCGA-H4-A2HO TCGA-K4-A4AB TCGA-K4-A4AC 
        5.69         4.14         6.41         1.51         2.50         6.48 
TCGA-K4-A54R TCGA-K4-A6FZ TCGA-LC-A66R TCGA-LT-A5Z6 TCGA-MV-A51V TCGA-PQ-A6FN 
       10.52         1.81         6.35         3.45        13.48        16.67 

  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             0.10              0.07 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
           130.88            140.81 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
            7.265             9.325 
[1] "0.1 - 130.9 (7.3)" "0.1 - 140.8 (9.3)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D5V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  3P GAIN MUTATED         0       25        14       25
  3P GAIN WILD-TYPE       2       40        52       33
D5V3, multiclass
           clus
vv          3P GAIN MUTATED 3P GAIN WILD-TYPE
  STAGE I                 0                 2
  STAGE II               25                40
  STAGE III              14                52
  STAGE IV               25                33
                   vv
clus                T0+T1+T2 T3 T4
  3P GAIN MUTATED         22 23 11
  3P GAIN WILD-TYPE       37 67 17
D5V4, multiclass
          clus
vv         3P GAIN MUTATED 3P GAIN WILD-TYPE
  T0+T1+T2              22                37
  T3                    23                67
  T4                    11                17
                   vv
clus                N0 N1 N2 N3
  3P GAIN MUTATED   34  7 17  2
  3P GAIN WILD-TYPE 86 11 16  5
D5V5, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  N0              34                86
  N1               7                11
  N2              17                16
  N3               2                 5
                   vv
clus                M0 M1 MX
  3P GAIN MUTATED   35  2 28
  3P GAIN WILD-TYPE 68  3 58
D5V6, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  M0              35                68
  M1               2                 3
  MX              28                58
D5V7, binary
                   cls
clus                 0  1
  3P GAIN MUTATED   15 51
  3P GAIN WILD-TYPE 33 96
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED     15   51
  3P GAIN WILD-TYPE   33   96
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  FEMALE              15                33
  MALE                51                96
D5V8, continuous
D5V9, continuous
D5V10, continuous
D5V11, continuous

Clustering(6) Variable = 3Q GAIN MUTATION ANALYSIS
D6V1, survival
                   sevent
clus2                0  1
  3Q GAIN MUTATED   57 23
  3Q GAIN WILD-TYPE 75 33
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               80               108 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               23                33 
$`3Q GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A5ZZ TCGA-BT-A0YX TCGA-BT-A20J 
       40.08         7.33         2.66        12.39        11.93        19.04 
TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH 
        5.06         8.35         8.25        17.16         3.65         4.67 
TCGA-BT-A3PK TCGA-BT-A42E TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CU-A0YO TCGA-CU-A0YR 
        2.07         9.99         0.46         0.43         4.90         7.20 
TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1A7 
        5.46        16.31         1.84         2.53        31.40        18.41 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IK 
      130.88       112.44         1.81        10.59        87.32         2.20 
TCGA-DK-A3IN TCGA-DK-A3IS TCGA-DK-A3IU TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6B2 
        8.22        50.27        20.02        17.98        64.18        15.68 
TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E7-A3Y1 TCGA-E7-A4IJ TCGA-E7-A541 
       21.24        43.59        15.35         0.10         0.49         0.59 
TCGA-E7-A5KE TCGA-FD-A3B3 TCGA-FD-A3B6 TCGA-FD-A3N5 TCGA-FD-A3SJ TCGA-FD-A3SL 
        0.56        12.89         6.87        11.93        24.30        22.45 
TCGA-FD-A43P TCGA-FD-A43U TCGA-FD-A5C0 TCGA-FD-A62O TCGA-FD-A62P TCGA-FJ-A3ZE 
       14.93        14.93         6.87         4.83         6.28         3.48 
TCGA-FJ-A3ZF TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EO TCGA-G2-A2ES 
        4.08         6.48        61.94        30.61        35.24        17.26 
TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GD-A3OP 
        0.85         2.24        15.81        14.07        17.75         2.10 
TCGA-GD-A3OS TCGA-GU-A42P TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3QF TCGA-GV-A3QH 
       20.98         6.41         4.41         6.41         7.63         7.79 
TCGA-GV-A3QK TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        6.67        19.07         6.74         8.75         3.45         4.67 
TCGA-K4-A6MB TCGA-PQ-A6FI 
        4.27        12.23 

$`3Q GAIN WILD-TYPE`
TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q 
        6.74         6.58        32.84        12.16        17.88        19.50 
TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A2LB TCGA-BT-A3PJ TCGA-C4-A0EZ 
        5.06        14.89        14.96         5.59        12.82         8.98 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V 
        1.94        23.01         0.69         0.13         0.07         0.10 
TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A3QU TCGA-DK-A1A5 
        0.07         0.10         0.10        12.92         5.19         2.14 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I2 
       19.00         8.91        16.14        17.62        15.62         7.79 
TCGA-DK-A2I4 TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IV 
      123.85         3.98         7.82        10.49        21.30         9.67 
TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A6AW TCGA-DK-A6B0 
        8.28        10.55       140.81        48.00        48.53        64.64 
TCGA-DK-A6B1 TCGA-DK-A6B5 TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A4XJ TCGA-E7-A5KF 
       67.36        32.28        26.17        24.66         0.53         0.66 
TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B7 
        1.38         0.82         1.22        15.68         8.94         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO 
       12.43        15.88        45.93        16.47        12.82         5.52 
TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43S 
       13.18        46.78        19.79         1.97        22.98        14.96 
TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU 
        3.62        12.13        13.38        37.15        11.01         6.87 
TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C1 TCGA-FD-A62N 
        5.36         5.69         6.84        27.45        49.68         2.66 
TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FT-A3EE TCGA-G2-A2EK TCGA-G2-A2EL 
        6.38        15.19         7.13         3.25         5.69        26.93 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3BM TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3YS 
        7.04        20.12         2.89         4.50        15.91         1.12 
TCGA-GD-A2C5 TCGA-GD-A3OQ TCGA-GD-A6C6 TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JX 
        7.73         3.12         2.20         7.66        11.31         6.15 
TCGA-GV-A3JZ TCGA-GV-A3QI TCGA-GV-A40E TCGA-H4-A2HO TCGA-K4-A4AB TCGA-K4-A4AC 
        5.69         4.14         6.41         1.51         2.50         6.48 
TCGA-K4-A54R TCGA-K4-A6FZ TCGA-LC-A66R TCGA-LT-A5Z6 TCGA-MV-A51V TCGA-PQ-A6FN 
       10.52         1.81         6.35         3.45        13.48        16.67 

  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
             0.10              0.07 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
           130.88            140.81 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
            8.235             8.595 
[1] "0.1 - 130.9 (8.2)" "0.1 - 140.8 (8.6)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D6V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  3Q GAIN MUTATED         1       28        20       32
  3Q GAIN WILD-TYPE       1       37        46       26
D6V3, multiclass
           clus
vv          3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  STAGE I                 1                 1
  STAGE II               28                37
  STAGE III              20                46
  STAGE IV               32                26
                   vv
clus                T0+T1+T2 T3 T4
  3Q GAIN MUTATED         27 34 13
  3Q GAIN WILD-TYPE       32 56 15
D6V4, multiclass
          clus
vv         3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  T0+T1+T2              27                32
  T3                    34                56
  T4                    13                15
                   vv
clus                N0 N1 N2 N3
  3Q GAIN MUTATED   43  8 23  2
  3Q GAIN WILD-TYPE 77 10 10  5
D6V5, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  N0              43                77
  N1               8                10
  N2              23                10
  N3               2                 5
                   vv
clus                M0 M1 MX
  3Q GAIN MUTATED   46  3 34
  3Q GAIN WILD-TYPE 57  2 52
D6V6, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  M0              46                57
  M1               3                 2
  MX              34                52
D6V7, binary
                   cls
clus                 0  1
  3Q GAIN MUTATED   21 63
  3Q GAIN WILD-TYPE 27 84
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED     21   63
  3Q GAIN WILD-TYPE   27   84
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  FEMALE              21                27
  MALE                63                84
D6V8, continuous
D6V9, continuous
D6V10, continuous
D6V11, continuous

Clustering(7) Variable = 4P GAIN MUTATION ANALYSIS
D7V1, survival
                   sevent
clus2                 0   1
  4P GAIN MUTATED    15   5
  4P GAIN WILD-TYPE 117  51
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               20               168 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                5                51 
$`4P GAIN MUTATED`
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A47X TCGA-CU-A3KJ TCGA-DK-A1A5 TCGA-DK-A1A6 
        1.94        23.01         0.10         5.46         2.14        31.40 
TCGA-DK-A1AC TCGA-DK-A2I2 TCGA-DK-A3X1 TCGA-DK-A6AV TCGA-DK-A6B1 TCGA-E5-A4U1 
      130.88         7.79        48.00        64.18        67.36        26.17 
TCGA-E7-A541 TCGA-FD-A3NA TCGA-FD-A5BV TCGA-FD-A5BZ TCGA-G2-A2EF TCGA-GU-A42P 
        0.59        45.93         5.36        27.45        61.94         6.41 
TCGA-K4-A6FZ TCGA-MV-A51V 
        1.81        13.48 

$`4P GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q 
       11.93        19.04        32.84        12.16        17.88        19.50 
TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X 
        5.06        14.89        14.96         5.06         8.35         8.25 
TCGA-BT-A2LA TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK 
       17.16         5.59         3.65         4.67        12.82         2.07 
TCGA-BT-A42E TCGA-C4-A0EZ TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A47S 
        9.99         8.98         0.46         0.43         0.69         0.13 
TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A0YO 
        0.07         0.10         0.07         0.10        12.92         4.90 
TCGA-CU-A0YR TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A7 
        7.20         5.19        16.31         1.84         2.53        18.41 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
       19.00         8.91       112.44        16.14        17.62        15.62 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL 
        1.81        10.59       123.85        87.32         2.20         3.98 
TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU 
        7.82         8.22        10.49        50.27        21.30        20.02 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X2 TCGA-DK-A6AW 
        9.67         8.28        10.55       140.81        17.98        48.53 
TCGA-DK-A6B0 TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E5-A4TZ 
       64.64        15.68        32.28        21.24        43.59        15.35 
TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A5KE TCGA-E7-A5KF 
       24.66         0.10         0.49         0.53         0.56         0.66 
TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 
        1.38         0.82         1.22        12.89        15.68         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3SJ 
        6.87         4.01        12.43        11.93        15.88        24.30 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ 
       22.45        16.47        12.82         5.52        13.18        46.78 
TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U 
       19.79         1.97        22.98        14.93        14.96        14.93 
TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU 
        3.62        12.13        13.38        37.15        11.01         6.87 
TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5C0 TCGA-FD-A5C1 TCGA-FD-A62N TCGA-FD-A62O 
        5.69         6.84         6.87        49.68         2.66         4.83 
TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FJ-A3ZF 
        6.28         6.38        15.19         7.13         3.48         4.08 
TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        3.25         6.48        30.61         5.69        26.93        35.24 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 
       17.26         7.04        20.12         0.85         2.89         2.24 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS 
       15.81         4.50        15.91        14.07        17.75         1.12 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42Q 
        7.73         2.10         3.12        20.98         2.20         7.66 
TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF 
       11.31         4.41         6.41         6.15         5.69         7.63 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO 
        7.79         4.14         6.67         6.41        19.07         1.51 
TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A4AC 
        6.74         8.75         3.45         4.67         2.50         6.48 
TCGA-K4-A54R TCGA-K4-A6MB TCGA-LC-A66R TCGA-LT-A5Z6 TCGA-PQ-A6FI TCGA-PQ-A6FN 
       10.52         4.27         6.35         3.45        12.23        16.67 

  4P GAIN MUTATED 4P GAIN WILD-TYPE 
             0.10              0.07 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
           130.88            140.81 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
           18.245             8.235 
[1] "0.1 - 130.9 (18.2)" "0.1 - 140.8 (8.2)" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
[1] "hr=" "1.9"
D7V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  4P GAIN MUTATED         0        9         7        4
  4P GAIN WILD-TYPE       2       56        59       54
D7V3, multiclass
           clus
vv          4P GAIN MUTATED 4P GAIN WILD-TYPE
  STAGE I                 0                 2
  STAGE II                9                56
  STAGE III               7                59
  STAGE IV                4                54
                   vv
clus                T0+T1+T2 T3 T4
  4P GAIN MUTATED          9 10  0
  4P GAIN WILD-TYPE       50 80 28
D7V4, multiclass
          clus
vv         4P GAIN MUTATED 4P GAIN WILD-TYPE
  T0+T1+T2               9                50
  T3                    10                80
  T4                     0                28
                   vv
clus                 N0  N1  N2  N3
  4P GAIN MUTATED    16   3   0   1
  4P GAIN WILD-TYPE 104  15  33   6
D7V5, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  N0              16               104
  N1               3                15
  N2               0                33
  N3               1                 6
                   vv
clus                M0 M1 MX
  4P GAIN MUTATED   15  0  5
  4P GAIN WILD-TYPE 88  5 81
D7V6, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  M0              15                88
  M1               0                 5
  MX               5                81
D7V7, binary
                   cls
clus                  0   1
  4P GAIN MUTATED     7  13
  4P GAIN WILD-TYPE  41 134
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      7   13
  4P GAIN WILD-TYPE   41  134
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  FEMALE               7                41
  MALE                13               134
D7V8, continuous
D7V9, continuous
D7V10, continuous
D7V11, continuous

Clustering(8) Variable = 4Q GAIN MUTATION ANALYSIS
D8V1, survival
                   sevent
clus2                 0   1
  4Q GAIN MUTATED     9   3
  4Q GAIN WILD-TYPE 123  53
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               12               176 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                3                53 
$`4Q GAIN MUTATED`
TCGA-C4-A0F6 TCGA-CF-A47X TCGA-CU-A3KJ TCGA-DK-A1A5 TCGA-DK-A3X1 TCGA-DK-A6B1 
       23.01         0.10         5.46         2.14        48.00        67.36 
TCGA-E5-A4U1 TCGA-FD-A3NA TCGA-FD-A5BV TCGA-FD-A5C0 TCGA-G2-A2EF TCGA-GU-A42P 
       26.17        45.93         5.36         6.87        61.94         6.41 

$`4Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q 
       11.93        19.04        32.84        12.16        17.88        19.50 
TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X 
        5.06        14.89        14.96         5.06         8.35         8.25 
TCGA-BT-A2LA TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK 
       17.16         5.59         3.65         4.67        12.82         2.07 
TCGA-BT-A42E TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C 
        9.99         8.98         1.94         0.46         0.43         0.69 
TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47Y TCGA-CU-A0YN 
        0.13         0.07         0.10         0.07         0.10        12.92 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A3 
        4.90         7.20         5.19        16.31         1.84         2.53 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD 
       31.40        18.41        19.00         8.91       130.88       112.44 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
       16.14        17.62        15.62         1.81        10.59         7.79 
TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN 
      123.85        87.32         2.20         3.98         7.82         8.22 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW 
       10.49        50.27        21.30        20.02         9.67         8.28 
TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 
       10.55       140.81        17.98        64.18        48.53        64.64 
TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E7-A3X6 
       15.68        32.28        21.24        43.59        15.35        24.66 
TCGA-E7-A3Y1 TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A5KF 
        0.10         0.49         0.53         0.59         0.56         0.66 
TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 
        1.38         0.82         1.22        12.89        15.68         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3SJ 
        6.87         4.01        12.43        11.93        15.88        24.30 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ 
       22.45        16.47        12.82         5.52        13.18        46.78 
TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U 
       19.79         1.97        22.98        14.93        14.96        14.93 
TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU 
        3.62        12.13        13.38        37.15        11.01         6.87 
TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C1 TCGA-FD-A62N TCGA-FD-A62O 
        5.69         6.84        27.45        49.68         2.66         4.83 
TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FJ-A3ZF 
        6.28         6.38        15.19         7.13         3.48         4.08 
TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        3.25         6.48        30.61         5.69        26.93        35.24 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 
       17.26         7.04        20.12         0.85         2.89         2.24 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS 
       15.81         4.50        15.91        14.07        17.75         1.12 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42Q 
        7.73         2.10         3.12        20.98         2.20         7.66 
TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF 
       11.31         4.41         6.41         6.15         5.69         7.63 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO 
        7.79         4.14         6.67         6.41        19.07         1.51 
TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A4AC 
        6.74         8.75         3.45         4.67         2.50         6.48 
TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LC-A66R TCGA-LT-A5Z6 TCGA-MV-A51V 
       10.52         1.81         4.27         6.35         3.45        13.48 
TCGA-PQ-A6FI TCGA-PQ-A6FN 
       12.23        16.67 

  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
             0.10              0.07 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
            67.36            140.81 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
           14.940             8.265 
[1] "0.1 - 67.4 (14.9)" "0.1 - 140.8 (8.3)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
[1] "hr=" "1.8"
D8V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  4Q GAIN MUTATED         0        6         4        2
  4Q GAIN WILD-TYPE       2       59        62       56
D8V3, multiclass
           clus
vv          4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  STAGE I                 0                 2
  STAGE II                6                59
  STAGE III               4                62
  STAGE IV                2                56
                   vv
clus                T0+T1+T2 T3 T4
  4Q GAIN MUTATED          5  6  0
  4Q GAIN WILD-TYPE       54 84 28
D8V4, multiclass
          clus
vv         4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  T0+T1+T2               5                54
  T3                     6                84
  T4                     0                28
                   vv
clus                 N0  N1  N2  N3
  4Q GAIN MUTATED    10   1   1   0
  4Q GAIN WILD-TYPE 110  17  32   7
D8V5, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  N0              10               110
  N1               1                17
  N2               1                32
  N3               0                 7
                   vv
clus                M0 M1 MX
  4Q GAIN MUTATED    9  0  3
  4Q GAIN WILD-TYPE 94  5 83
D8V6, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  M0               9                94
  M1               0                 5
  MX               3                83
D8V7, binary
                   cls
clus                  0   1
  4Q GAIN MUTATED     3   9
  4Q GAIN WILD-TYPE  45 138
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      3    9
  4Q GAIN WILD-TYPE   45  138
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  FEMALE               3                45
  MALE                 9               138
D8V8, continuous
D8V9, continuous
D8V10, continuous
D8V11, continuous

Clustering(9) Variable = 5P GAIN MUTATION ANALYSIS
D9V1, survival
                   sevent
clus2                0  1
  5P GAIN MUTATED   51 24
  5P GAIN WILD-TYPE 81 32
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               75               113 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               24                32 
$`5P GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A20N TCGA-BT-A20T TCGA-BT-A20V 
       40.08         6.74        12.39        32.84        14.89         5.06 
TCGA-BT-A20W TCGA-BT-A2LA TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-CF-A1HS TCGA-CF-A47S 
        8.35        17.16        12.82         2.07         0.43         0.13 
TCGA-CU-A0YN TCGA-CU-A0YR TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A2I4 TCGA-DK-A2I6 
       12.92         7.20         5.19         2.53       123.85        87.32 
TCGA-DK-A3IN TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WX TCGA-DK-A6AV TCGA-DK-A6B1 
        8.22        20.02         9.67        10.55        64.18        67.36 
TCGA-DK-A6B5 TCGA-DK-A6B6 TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A4IJ 
       32.28        21.24        15.35        26.17        24.66         0.49 
TCGA-E7-A541 TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3N5 
        0.59         1.22        12.89        15.68         8.94        11.93 
TCGA-FD-A3NA TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SR TCGA-FD-A43Y TCGA-FD-A5BR 
       45.93         5.52        13.18        19.79        12.13        13.38 
TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BY TCGA-FD-A5C1 TCGA-FD-A62N TCGA-FD-A62O 
        6.87         5.36         6.84        49.68         2.66         4.83 
TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EO 
        6.28         6.38         4.08         3.25         6.48        35.24 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3YS TCGA-GD-A3OP 
        7.04        20.12         2.24        15.81         1.12         2.10 
TCGA-GD-A3OS TCGA-GU-A42P TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3QF TCGA-GV-A3QH 
       20.98         6.41         4.41         6.15         7.63         7.79 
TCGA-GV-A3QI TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A4AC TCGA-K4-A6FZ 
        4.14         6.41        19.07         6.74         6.48         1.81 
TCGA-LC-A66R TCGA-MV-A51V TCGA-PQ-A6FN 
        6.35        13.48        16.67 

$`5P GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O 
        7.33         2.66         6.58        11.93        19.04        12.16 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20X TCGA-BT-A2LB 
       17.88        19.50         5.06        14.96         8.25         5.59 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A42E TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 
        3.65         4.67         9.99         8.98         1.94        23.01 
TCGA-CF-A1HR TCGA-CF-A27C TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X 
        0.46         0.69         0.07         0.10         0.07         0.10 
TCGA-CF-A47Y TCGA-CU-A0YO TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A5 
        0.10         4.90         5.46        16.31         1.84         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD 
       31.40        18.41        19.00         8.91       130.88       112.44 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
       16.14        17.62        15.62         1.81        10.59         7.79 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT 
        2.20         3.98         7.82        10.49        50.27        21.30 
TCGA-DK-A3WW TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AW TCGA-DK-A6B0 
        8.28       140.81        48.00        17.98        48.53        64.64 
TCGA-DK-A6B2 TCGA-E5-A2PC TCGA-E7-A3Y1 TCGA-E7-A4XJ TCGA-E7-A5KE TCGA-E7-A5KF 
       15.68        43.59         0.10         0.53         0.56         0.66 
TCGA-E7-A677 TCGA-E7-A678 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 
        1.38         0.82         6.87         4.01        12.43        15.88 
TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SQ TCGA-FD-A3SS 
       24.30        22.45        16.47        12.82        46.78         1.97 
TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A5BS 
       22.98        14.93        14.96        14.93         3.62        37.15 
TCGA-FD-A5BT TCGA-FD-A5BX TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 
       11.01         5.69        27.45         6.87        15.19         7.13 
TCGA-FJ-A3ZE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2ES 
        3.48        61.94        30.61         5.69        26.93        17.26 
TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC 
        0.85         2.89         4.50        15.91        14.07        17.75 
TCGA-GD-A2C5 TCGA-GD-A3OQ TCGA-GD-A6C6 TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JW 
        7.73         3.12         2.20         7.66        11.31         6.41 
TCGA-GV-A3JZ TCGA-GV-A3QK TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        5.69         6.67         1.51         8.75         3.45         4.67 
TCGA-K4-A4AB TCGA-K4-A54R TCGA-K4-A6MB TCGA-LT-A5Z6 TCGA-PQ-A6FI 
        2.50        10.52         4.27         3.45        12.23 

  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             0.13              0.07 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
           123.85            140.81 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             8.22              8.28 
[1] "0.1 - 123.8 (8.2)" "0.1 - 140.8 (8.3)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
[1] "hr=" "1.1"
D9V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  5P GAIN MUTATED         1       27        29       20
  5P GAIN WILD-TYPE       1       38        37       38
D9V3, multiclass
           clus
vv          5P GAIN MUTATED 5P GAIN WILD-TYPE
  STAGE I                 1                 1
  STAGE II               27                38
  STAGE III              29                37
  STAGE IV               20                38
                   vv
clus                T0+T1+T2 T3 T4
  5P GAIN MUTATED         25 32 12
  5P GAIN WILD-TYPE       34 58 16
D9V4, multiclass
          clus
vv         5P GAIN MUTATED 5P GAIN WILD-TYPE
  T0+T1+T2              25                34
  T3                    32                58
  T4                    12                16
                   vv
clus                N0 N1 N2 N3
  5P GAIN MUTATED   46  8 11  2
  5P GAIN WILD-TYPE 74 10 22  5
D9V5, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  N0              46                74
  N1               8                10
  N2              11                22
  N3               2                 5
                   vv
clus                M0 M1 MX
  5P GAIN MUTATED   34  1 43
  5P GAIN WILD-TYPE 69  4 43
D9V6, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  M0              34                69
  M1               1                 4
  MX              43                43
D9V7, binary
                   cls
clus                 0  1
  5P GAIN MUTATED   18 60
  5P GAIN WILD-TYPE 30 87
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     18   60
  5P GAIN WILD-TYPE   30   87
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  FEMALE              18                30
  MALE                60                87
D9V8, continuous
D9V9, continuous
D9V10, continuous
D9V11, continuous

Clustering(10) Variable = 5Q GAIN MUTATION ANALYSIS
D10V1, survival
                   sevent
clus2                 0   1
  5Q GAIN MUTATED    16   8
  5Q GAIN WILD-TYPE 116  48
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               24               164 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                8                48 
$`5Q GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A3JM TCGA-BT-A20N TCGA-BT-A20T TCGA-CF-A1HS TCGA-DK-A2I4 
       40.08         6.74        32.84        14.89         0.43       123.85 
TCGA-DK-A2I6 TCGA-DK-A6AV TCGA-DK-A6B6 TCGA-E7-A541 TCGA-FD-A5BU TCGA-FD-A5C1 
       87.32        64.18        21.24         0.59         6.87        49.68 
TCGA-FD-A62P TCGA-FT-A3EE TCGA-G2-A2EO TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GV-A3JV 
        6.28         3.25        35.24         2.24        15.81         4.41 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A40E TCGA-K4-A4AC TCGA-LC-A66R TCGA-MV-A51V 
        7.79         4.14         6.41         6.48         6.35        13.48 

$`5Q GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A5ZZ TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
        7.33         2.66        12.39         6.58        11.93        19.04 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20V 
       12.16        17.88        19.50         5.06        14.96         5.06 
TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH 
        8.35         8.25        17.16         5.59         3.65         4.67 
TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-BT-A42E TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 
       12.82         2.07         9.99         8.98         1.94        23.01 
TCGA-CF-A1HR TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W 
        0.46         0.69         0.13         0.07         0.10         0.07 
TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ 
        0.10         0.10        12.92         4.90         7.20         5.46 
TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 
        5.19        16.31         1.84         2.53         2.14        31.40 
TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE 
       18.41        19.00         8.91       130.88       112.44        16.14 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A3IK 
       17.62        15.62         1.81        10.59         7.79         2.20 
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT 
        3.98         7.82         8.22        10.49        50.27        21.30 
TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 
       20.02         9.67         8.28        10.55       140.81        48.00 
TCGA-DK-A3X2 TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-DK-A6B5 
       17.98        48.53        64.64        67.36        15.68        32.28 
TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4IJ 
       43.59        15.35        26.17        24.66         0.10         0.49 
TCGA-E7-A4XJ TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV 
        0.53         0.56         0.66         1.38         0.82         1.22 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
       12.89        15.68         8.94         6.87         4.01        12.43 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM 
       11.93        15.88        45.93        24.30        22.45        16.47 
TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS 
       12.82         5.52        13.18        46.78        19.79         1.97 
TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A43Y 
       22.98        14.93        14.96        14.93         3.62        12.13 
TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BY 
       13.38        37.15        11.01         5.36         5.69         6.84 
TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62S TCGA-FJ-A3Z7 
       27.45         6.87         2.66         4.83         6.38        15.19 
TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ 
        7.13         3.48         4.08         6.48        61.94        30.61 
TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY 
        5.69        26.93        17.26         7.04        20.12         0.85 
TCGA-GC-A3BM TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS 
        2.89         4.50        15.91        14.07        17.75         1.12 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42P 
        7.73         2.10         3.12        20.98         2.20         6.41 
TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF 
        7.66        11.31         6.41         6.15         5.69         7.63 
TCGA-GV-A3QK TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        6.67        19.07         1.51         6.74         8.75         3.45 
TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LT-A5Z6 
        4.67         2.50        10.52         1.81         4.27         3.45 
TCGA-PQ-A6FI TCGA-PQ-A6FN 
       12.23        16.67 

  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
             0.43              0.07 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
           123.85            140.81 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
            7.330             8.315 
[1] "0.4 - 123.8 (7.3)" "0.1 - 140.8 (8.3)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D10V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  5Q GAIN MUTATED         1       10        10        4
  5Q GAIN WILD-TYPE       1       55        56       54
D10V3, multiclass
           clus
vv          5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  STAGE I                 1                 1
  STAGE II               10                55
  STAGE III              10                56
  STAGE IV                4                54
                   vv
clus                T0+T1+T2 T3 T4
  5Q GAIN MUTATED          9 12  2
  5Q GAIN WILD-TYPE       50 78 26
D10V4, multiclass
          clus
vv         5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  T0+T1+T2               9                50
  T3                    12                78
  T4                     2                26
                   vv
clus                 N0  N1  N2  N3
  5Q GAIN MUTATED    18   3   1   0
  5Q GAIN WILD-TYPE 102  15  32   7
D10V5, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  N0              18               102
  N1               3                15
  N2               1                32
  N3               0                 7
                   vv
clus                M0 M1 MX
  5Q GAIN MUTATED   13  0 13
  5Q GAIN WILD-TYPE 90  5 73
D10V6, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  M0              13                90
  M1               0                 5
  MX              13                73
D10V7, binary
                   cls
clus                  0   1
  5Q GAIN MUTATED     5  21
  5Q GAIN WILD-TYPE  43 126
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      5   21
  5Q GAIN WILD-TYPE   43  126
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  FEMALE               5                43
  MALE                21               126
D10V8, continuous
D10V9, continuous
D10V10, continuous
D10V11, continuous

Clustering(11) Variable = 6P GAIN MUTATION ANALYSIS
D11V1, survival
                   sevent
clus2                 0   1
  6P GAIN MUTATED    20   7
  6P GAIN WILD-TYPE 112  49
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               27               161 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
                7                49 
$`6P GAIN MUTATED`
TCGA-BT-A0S7 TCGA-CF-A47V TCGA-DK-A1AC TCGA-DK-A2I6 TCGA-DK-A3IM TCGA-DK-A3WX 
        6.58         0.10       130.88        87.32         7.82        10.55 
TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-E7-A541 TCGA-FD-A3B7 TCGA-FD-A3SR TCGA-FD-A3SS 
       67.36        15.68         0.59         4.01        19.79         1.97 
TCGA-FD-A5BU TCGA-FD-A5C1 TCGA-FJ-A3ZE TCGA-FT-A3EE TCGA-FT-A61P TCGA-GC-A3BM 
        6.87        49.68         3.48         3.25         6.48         2.89 
TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GU-A42P 
        2.24        15.81        15.91         1.12         7.73         6.41 
TCGA-K4-A4AC TCGA-LC-A66R TCGA-LT-A5Z6 
        6.48         6.35         3.45 

$`6P GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0YX 
       40.08         7.33         2.66         6.74        12.39        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.04        32.84        12.16        17.88        19.50         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89        14.96         5.06         8.35         8.25        17.16 
TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-BT-A42E 
        5.59         3.65         4.67        12.82         2.07         9.99 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C 
        8.98         1.94        23.01         0.46         0.43         0.69 
TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YN 
        0.13         0.07         0.07         0.10         0.10        12.92 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 
        4.90         7.20         5.46         5.19        16.31         1.84 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB 
        2.53         2.14        31.40        18.41        19.00         8.91 
TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 
      112.44        16.14        17.62        15.62         1.81        10.59 
TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IN TCGA-DK-A3IQ 
        7.79       123.85         2.20         3.98         8.22        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WY 
       50.27        21.30        20.02         9.67         8.28       140.81 
TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B5 
       48.00        17.98        64.18        48.53        64.64        32.28 
TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 
       21.24        43.59        15.35        26.17        24.66         0.10 
TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 
        0.49         0.53         0.56         0.66         1.38         0.82 
TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B8 
        1.22        12.89        15.68         8.94         6.87        12.43 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM 
       11.93        15.88        45.93        24.30        22.45        16.47 
TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A43N TCGA-FD-A43P 
       12.82         5.52        13.18        46.78        22.98        14.93 
TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS 
       14.96        14.93         3.62        12.13        13.38        37.15 
TCGA-FD-A5BT TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C0 
       11.01         5.36         5.69         6.84        27.45         6.87 
TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 
        2.66         4.83         6.28         6.38        15.19         7.13 
TCGA-FJ-A3ZF TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        4.08        61.94        30.61         5.69        26.93        35.24 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3RB TCGA-GC-A3RD 
       17.26         7.04        20.12         0.85         4.50        14.07 
TCGA-GC-A3WC TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42Q 
       17.75         2.10         3.12        20.98         2.20         7.66 
TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF 
       11.31         4.41         6.41         6.15         5.69         7.63 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO 
        7.79         4.14         6.67         6.41        19.07         1.51 
TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A54R 
        6.74         8.75         3.45         4.67         2.50        10.52 
TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-MV-A51V TCGA-PQ-A6FI TCGA-PQ-A6FN 
        1.81         4.27        13.48        12.23        16.67 

  6P GAIN MUTATED 6P GAIN WILD-TYPE 
             0.10              0.07 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
           130.88            140.81 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
             6.48              8.94 
[1] "0.1 - 130.9 (6.5)" "0.1 - 140.8 (8.9)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D11V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  6P GAIN MUTATED         0        9         8       10
  6P GAIN WILD-TYPE       2       56        58       48
D11V3, multiclass
           clus
vv          6P GAIN MUTATED 6P GAIN WILD-TYPE
  STAGE I                 0                 2
  STAGE II                9                56
  STAGE III               8                58
  STAGE IV               10                48
                   vv
clus                T0+T1+T2 T3 T4
  6P GAIN MUTATED          9 11  5
  6P GAIN WILD-TYPE       50 79 23
D11V4, multiclass
          clus
vv         6P GAIN MUTATED 6P GAIN WILD-TYPE
  T0+T1+T2               9                50
  T3                    11                79
  T4                     5                23
                   vv
clus                 N0  N1  N2  N3
  6P GAIN MUTATED    16   4   4   2
  6P GAIN WILD-TYPE 104  14  29   5
D11V5, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  N0              16               104
  N1               4                14
  N2               4                29
  N3               2                 5
                   vv
clus                M0 M1 MX
  6P GAIN MUTATED   12  1 14
  6P GAIN WILD-TYPE 91  4 72
D11V6, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  M0              12                91
  M1               1                 4
  MX              14                72
D11V7, binary
                   cls
clus                  0   1
  6P GAIN MUTATED     5  22
  6P GAIN WILD-TYPE  43 125
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      5   22
  6P GAIN WILD-TYPE   43  125
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  FEMALE               5                43
  MALE                22               125
D11V8, continuous
D11V9, continuous
D11V10, continuous
D11V11, continuous

Clustering(12) Variable = 6Q GAIN MUTATION ANALYSIS
D12V1, survival
                   sevent
clus2                 0   1
  6Q GAIN MUTATED    13   4
  6Q GAIN WILD-TYPE 119  52
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               17               171 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                4                52 
$`6Q GAIN MUTATED`
TCGA-BT-A0S7 TCGA-BT-A2LA TCGA-CF-A47V TCGA-DK-A1AC TCGA-DK-A2I6 TCGA-DK-A3IM 
        6.58        17.16         0.10       130.88        87.32         7.82 
TCGA-DK-A3WX TCGA-DK-A6B1 TCGA-FD-A3SS TCGA-FD-A5C1 TCGA-FJ-A3ZE TCGA-GC-A3BM 
       10.55        67.36         1.97        49.68         3.48         2.89 
TCGA-GC-A3OO TCGA-GC-A3YS TCGA-GU-A42P TCGA-K4-A4AC TCGA-LC-A66R 
       15.81         1.12         6.41         6.48         6.35 

$`6Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0YX 
       40.08         7.33         2.66         6.74        12.39        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.04        32.84        12.16        17.88        19.50         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LB 
       14.89        14.96         5.06         8.35         8.25         5.59 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-BT-A42E TCGA-C4-A0EZ 
        3.65         4.67        12.82         2.07         9.99         8.98 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A47S 
        1.94        23.01         0.46         0.43         0.69         0.13 
TCGA-CF-A47T TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A0YO 
        0.07         0.07         0.10         0.10        12.92         4.90 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A3 
        7.20         5.46         5.19        16.31         1.84         2.53 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD 
        2.14        31.40        18.41        19.00         8.91       112.44 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
       16.14        17.62        15.62         1.81        10.59         7.79 
TCGA-DK-A2I4 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS 
      123.85         2.20         3.98         8.22        10.49        50.27 
TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WY TCGA-DK-A3X1 
       21.30        20.02         9.67         8.28       140.81        48.00 
TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B2 TCGA-DK-A6B5 
       17.98        64.18        48.53        64.64        15.68        32.28 
TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 
       21.24        43.59        15.35        26.17        24.66         0.10 
TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 
        0.49         0.53         0.59         0.56         0.66         1.38 
TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
        0.82         1.22        12.89        15.68         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ 
        4.01        12.43        11.93        15.88        45.93        24.30 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ 
       22.45        16.47        12.82         5.52        13.18        46.78 
TCGA-FD-A3SR TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43X 
       19.79        22.98        14.93        14.96        14.93         3.62 
TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BV 
       12.13        13.38        37.15        11.01         6.87         5.36 
TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A62N TCGA-FD-A62O 
        5.69         6.84        27.45         6.87         2.66         4.83 
TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZF TCGA-FT-A3EE 
        6.28         6.38        15.19         7.13         4.08         3.25 
TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        6.48        61.94        30.61         5.69        26.93        35.24 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3RB 
       17.26         7.04        20.12         0.85         2.24         4.50 
TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
       15.91        14.07        17.75         7.73         2.10         3.12 
TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW 
       20.98         2.20         7.66        11.31         4.41         6.41 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK 
        6.15         5.69         7.63         7.79         4.14         6.67 
TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        6.41        19.07         1.51         6.74         8.75         3.45 
TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LT-A5Z6 
        4.67         2.50        10.52         1.81         4.27         3.45 
TCGA-MV-A51V TCGA-PQ-A6FI TCGA-PQ-A6FN 
       13.48        12.23        16.67 

  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
             0.10              0.07 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
           130.88            140.81 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
             6.58              8.35 
[1] "0.1 - 130.9 (6.6)" "0.1 - 140.8 (8.3)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D12V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  6Q GAIN MUTATED         0        5         6        6
  6Q GAIN WILD-TYPE       2       60        60       52
D12V3, multiclass
           clus
vv          6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  STAGE I                 0                 2
  STAGE II                5                60
  STAGE III               6                60
  STAGE IV                6                52
                   vv
clus                T0+T1+T2 T3 T4
  6Q GAIN MUTATED          6  7  3
  6Q GAIN WILD-TYPE       53 83 25
D12V4, multiclass
          clus
vv         6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  T0+T1+T2               6                53
  T3                     7                83
  T4                     3                25
                   vv
clus                 N0  N1  N2  N3
  6Q GAIN MUTATED    11   3   1   2
  6Q GAIN WILD-TYPE 109  15  32   5
D12V5, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  N0              11               109
  N1               3                15
  N2               1                32
  N3               2                 5
                   vv
clus                M0 M1 MX
  6Q GAIN MUTATED   10  1  6
  6Q GAIN WILD-TYPE 93  4 80
D12V6, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  M0              10                93
  M1               1                 4
  MX               6                80
D12V7, binary
                   cls
clus                  0   1
  6Q GAIN MUTATED     2  15
  6Q GAIN WILD-TYPE  46 132
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      2   15
  6Q GAIN WILD-TYPE   46  132
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  FEMALE               2                46
  MALE                15               132
D12V8, continuous
D12V9, continuous
D12V10, continuous
D12V11, continuous

Clustering(13) Variable = 7P GAIN MUTATION ANALYSIS
D13V1, survival
                   sevent
clus2                0  1
  7P GAIN MUTATED   54 24
  7P GAIN WILD-TYPE 78 32
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               78               110 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               24                32 
$`7P GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BL-A5ZZ TCGA-BT-A0S7 TCGA-BT-A20N TCGA-BT-A20O 
       40.08         2.66        12.39         6.58        32.84        12.16 
TCGA-BT-A2LA TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PJ TCGA-BT-A42E TCGA-C4-A0F6 
       17.16         5.59         3.65        12.82         9.99        23.01 
TCGA-CF-A1HR TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1AC 
        0.46        12.92         4.90         5.46         2.53       130.88 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL 
       10.59         7.79       123.85        87.32         2.20         3.98 
TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IS TCGA-DK-A3IU TCGA-DK-A3X1 TCGA-DK-A3X2 
        7.82         8.22        50.27        20.02        48.00        17.98 
TCGA-DK-A6AV TCGA-DK-A6B1 TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E7-A4IJ 
       64.18        67.36        21.24        43.59        15.35         0.49 
TCGA-E7-A541 TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3N5 
        0.59         1.22        12.89         8.94         4.01        11.93 
TCGA-FD-A3SQ TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43U TCGA-FD-A43X 
       46.78         1.97        22.98        14.93        14.93         3.62 
TCGA-FD-A5BR TCGA-FD-A5BV TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A5C1 TCGA-FD-A62O 
       13.38         5.36        27.45         6.87        49.68         4.83 
TCGA-FD-A62P TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-FT-A61P 
        6.28        15.19         3.48         4.08         3.25         6.48 
TCGA-G2-A2EO TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3RC TCGA-GC-A3RD 
       35.24         0.85         2.89         2.24        15.91        14.07 
TCGA-GD-A2C5 TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GU-A42Q TCGA-GV-A3JZ 
        7.73        20.98         2.20         6.41         7.66         5.69 
TCGA-GV-A3QK TCGA-GV-A40E TCGA-H4-A2HQ TCGA-K4-A6FZ TCGA-LC-A66R TCGA-MV-A51V 
        6.67         6.41         6.74         1.81         6.35        13.48 

$`7P GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20P TCGA-BT-A20Q 
        7.33         6.74        11.93        19.04        17.88        19.50 
TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X 
        5.06        14.89        14.96         5.06         8.35         8.25 
TCGA-BT-A3PH TCGA-BT-A3PK TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A1HS TCGA-CF-A27C 
        4.67         2.07         8.98         1.94         0.43         0.69 
TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y 
        0.13         0.07         0.10         0.07         0.10         0.10 
TCGA-CU-A0YR TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A5 TCGA-DK-A1A6 
        7.20         5.19        16.31         1.84         2.14        31.40 
TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
       18.41        19.00         8.91       112.44        16.14        17.62 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IV TCGA-DK-A3WW 
       15.62         1.81        10.49        21.30         9.67         8.28 
TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B2 TCGA-DK-A6B5 
       10.55       140.81        48.53        64.64        15.68        32.28 
TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4XJ TCGA-E7-A5KE TCGA-E7-A5KF 
       26.17        24.66         0.10         0.53         0.56         0.66 
TCGA-E7-A677 TCGA-E7-A678 TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3B8 TCGA-FD-A3N6 
        1.38         0.82        15.68         6.87        12.43        15.88 
TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO 
       45.93        24.30        22.45        16.47        12.82         5.52 
TCGA-FD-A3SP TCGA-FD-A3SR TCGA-FD-A43S TCGA-FD-A43Y TCGA-FD-A5BS TCGA-FD-A5BT 
       13.18        19.79        14.96        12.13        37.15        11.01 
TCGA-FD-A5BU TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A62N TCGA-FD-A62S TCGA-FJ-A3Z9 
        6.87         5.69         6.84         2.66         6.38         7.13 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2ES TCGA-G2-A3IB 
       61.94        30.61         5.69        26.93        17.26         7.04 
TCGA-G2-A3IE TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A3OP 
       20.12        15.81         4.50        17.75         1.12         2.10 
TCGA-GD-A3OQ TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QF 
        3.12        11.31         4.41         6.41         6.15         7.63 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A40G TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU 
        7.79         4.14        19.07         1.51         8.75         3.45 
TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6MB TCGA-LT-A5Z6 
        4.67         2.50         6.48        10.52         4.27         3.45 
TCGA-PQ-A6FI TCGA-PQ-A6FN 
       12.23        16.67 

  7P GAIN MUTATED 7P GAIN WILD-TYPE 
             0.46              0.07 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           130.88            140.81 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
            8.020             8.315 
[1] "0.5 - 130.9 (8.0)" "0.1 - 140.8 (8.3)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D13V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  7P GAIN MUTATED         1       20        31       27
  7P GAIN WILD-TYPE       1       45        35       31
D13V3, multiclass
           clus
vv          7P GAIN MUTATED 7P GAIN WILD-TYPE
  STAGE I                 1                 1
  STAGE II               20                45
  STAGE III              31                35
  STAGE IV               27                31
                   vv
clus                T0+T1+T2 T3 T4
  7P GAIN MUTATED         21 40 13
  7P GAIN WILD-TYPE       38 50 15
D13V4, multiclass
          clus
vv         7P GAIN MUTATED 7P GAIN WILD-TYPE
  T0+T1+T2              21                38
  T3                    40                50
  T4                    13                15
                   vv
clus                N0 N1 N2 N3
  7P GAIN MUTATED   45  6 17  6
  7P GAIN WILD-TYPE 75 12 16  1
D13V5, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  N0              45                75
  N1               6                12
  N2              17                16
  N3               6                 1
                   vv
clus                M0 M1 MX
  7P GAIN MUTATED   40  2 38
  7P GAIN WILD-TYPE 63  3 48
D13V6, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  M0              40                63
  M1               2                 3
  MX              38                48
D13V7, binary
                   cls
clus                 0  1
  7P GAIN MUTATED   21 60
  7P GAIN WILD-TYPE 27 87
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     21   60
  7P GAIN WILD-TYPE   27   87
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  FEMALE              21                27
  MALE                60                87
D13V8, continuous
D13V9, continuous
D13V10, continuous
D13V11, continuous

Clustering(14) Variable = 7Q GAIN MUTATION ANALYSIS
D14V1, survival
                   sevent
clus2                0  1
  7Q GAIN MUTATED   47 23
  7Q GAIN WILD-TYPE 85 33
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               70               118 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               23                33 
$`7Q GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BL-A5ZZ TCGA-BT-A0S7 TCGA-BT-A20N TCGA-BT-A2LA 
       40.08         2.66        12.39         6.58        32.84        17.16 
TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PJ TCGA-BT-A42E TCGA-C4-A0F6 TCGA-CF-A1HR 
        5.59         3.65        12.82         9.99        23.01         0.46 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A3KJ TCGA-DK-A1AD TCGA-DK-A2HX TCGA-DK-A2I1 
       12.92         4.90         5.46       112.44         1.81        10.59 
TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IL TCGA-DK-A3IN TCGA-DK-A3IS TCGA-DK-A3IU 
        7.79        87.32         3.98         8.22        50.27        20.02 
TCGA-DK-A3X2 TCGA-DK-A6B1 TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E7-A4IJ 
       17.98        67.36        21.24        43.59        15.35         0.49 
TCGA-E7-A541 TCGA-E7-A7DV TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3N5 
        0.59         1.22        15.68         8.94         4.01        11.93 
TCGA-FD-A3SQ TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43U TCGA-FD-A43X 
       46.78         1.97        22.98        14.93        14.93         3.62 
TCGA-FD-A5BR TCGA-FD-A5BV TCGA-FD-A5BZ TCGA-FD-A5C1 TCGA-FD-A62O TCGA-FD-A62P 
       13.38         5.36        27.45        49.68         4.83         6.28 
TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EO TCGA-G2-A3VY 
        3.48         4.08         3.25         6.48        35.24         0.85 
TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GD-A2C5 TCGA-GD-A3OS 
        2.89         2.24        15.91        14.07         7.73        20.98 
TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HQ 
        5.69         7.63         6.67         6.41        19.07         6.74 
TCGA-K4-A3WV TCGA-K4-A6FZ TCGA-LC-A66R TCGA-MV-A51V 
        4.67         1.81         6.35        13.48 

$`7Q GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20P 
        7.33         6.74        11.93        19.04        12.16        17.88 
TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W 
       19.50         5.06        14.89        14.96         5.06         8.35 
TCGA-BT-A20X TCGA-BT-A3PH TCGA-BT-A3PK TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A1HS 
        8.25         4.67         2.07         8.98         1.94         0.43 
TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X 
        0.69         0.13         0.07         0.10         0.07         0.10 
TCGA-CF-A47Y TCGA-CU-A0YR TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A3 
        0.10         7.20         5.19        16.31         1.84         2.53 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC 
        2.14        31.40        18.41        19.00         8.91       130.88 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I4 TCGA-DK-A3IK TCGA-DK-A3IM 
       16.14        17.62        15.62       123.85         2.20         7.82 
TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
       10.49        21.30         9.67         8.28        10.55       140.81 
TCGA-DK-A3X1 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B2 TCGA-DK-A6B5 
       48.00        64.18        48.53        64.64        15.68        32.28 
TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4XJ TCGA-E7-A5KE TCGA-E7-A5KF 
       26.17        24.66         0.10         0.53         0.56         0.66 
TCGA-E7-A677 TCGA-E7-A678 TCGA-FD-A3B3 TCGA-FD-A3B6 TCGA-FD-A3B8 TCGA-FD-A3N6 
        1.38         0.82        12.89         6.87        12.43        15.88 
TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO 
       45.93        24.30        22.45        16.47        12.82         5.52 
TCGA-FD-A3SP TCGA-FD-A3SR TCGA-FD-A43S TCGA-FD-A43Y TCGA-FD-A5BS TCGA-FD-A5BT 
       13.18        19.79        14.96        12.13        37.15        11.01 
TCGA-FD-A5BU TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5C0 TCGA-FD-A62N TCGA-FD-A62S 
        6.87         5.69         6.84         6.87         2.66         6.38 
TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
       15.19         7.13        61.94        30.61         5.69        26.93 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3WC 
       17.26         7.04        20.12        15.81         4.50        17.75 
TCGA-GC-A3YS TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GU-A42Q 
        1.12         2.10         3.12         2.20         6.41         7.66 
TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QH TCGA-GV-A3QI 
       11.31         4.41         6.41         6.15         7.79         4.14 
TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A4AB TCGA-K4-A4AC TCGA-K4-A54R 
        1.51         8.75         3.45         2.50         6.48        10.52 
TCGA-K4-A6MB TCGA-LT-A5Z6 TCGA-PQ-A6FI TCGA-PQ-A6FN 
        4.27         3.45        12.23        16.67 

  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
             0.46              0.07 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           112.44            140.81 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
            8.005             8.315 
[1] "0.5 - 112.4 (8.0)" "0.1 - 140.8 (8.3)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D14V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  7Q GAIN MUTATED         1       20        24       26
  7Q GAIN WILD-TYPE       1       45        42       32
D14V3, multiclass
           clus
vv          7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  STAGE I                 1                 1
  STAGE II               20                45
  STAGE III              24                42
  STAGE IV               26                32
                   vv
clus                T0+T1+T2 T3 T4
  7Q GAIN MUTATED         21 32 13
  7Q GAIN WILD-TYPE       38 58 15
D14V4, multiclass
          clus
vv         7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  T0+T1+T2              21                38
  T3                    32                58
  T4                    13                15
                   vv
clus                N0 N1 N2 N3
  7Q GAIN MUTATED   38  5 16  7
  7Q GAIN WILD-TYPE 82 13 17  0
D14V5, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  N0              38                82
  N1               5                13
  N2              16                17
  N3               7                 0
                   vv
clus                M0 M1 MX
  7Q GAIN MUTATED   32  2 38
  7Q GAIN WILD-TYPE 71  3 48
D14V6, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  M0              32                71
  M1               2                 3
  MX              38                48
D14V7, binary
                   cls
clus                 0  1
  7Q GAIN MUTATED   21 52
  7Q GAIN WILD-TYPE 27 95
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED     21   52
  7Q GAIN WILD-TYPE   27   95
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  FEMALE              21                27
  MALE                52                95
D14V8, continuous
D14V9, continuous
D14V10, continuous
D14V11, continuous

Clustering(15) Variable = 8P GAIN MUTATION ANALYSIS
D15V1, survival
                   sevent
clus2                 0   1
  8P GAIN MUTATED    25  10
  8P GAIN WILD-TYPE 107  46
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               35               153 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               10                46 
$`8P GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20V 
       40.08         6.74        12.39        19.04        32.84         5.06 
TCGA-BT-A2LA TCGA-BT-A42E TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A27C TCGA-DK-A1A6 
       17.16         9.99         1.94        23.01         0.69        31.40 
TCGA-DK-A1AE TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3WX TCGA-DK-A3X2 TCGA-DK-A6B2 
       16.14        10.49        50.27        10.55        17.98        15.68 
TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E5-A4U1 TCGA-E7-A4IJ TCGA-FD-A43U TCGA-FD-A5BS 
       21.24        43.59        26.17         0.49        14.93        37.15 
TCGA-FD-A5BX TCGA-FD-A5C1 TCGA-FD-A62O TCGA-FD-A62S TCGA-FJ-A3ZE TCGA-G2-A2ES 
        5.69        49.68         4.83         6.38         3.48        17.26 
TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GV-A3JV TCGA-GV-A3QI TCGA-MV-A51V 
        2.89         2.24         4.41         4.14        13.48 

$`8P GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20O TCGA-BT-A20P 
        7.33         2.66         6.58        11.93        12.16        17.88 
TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X 
       19.50         5.06        14.89        14.96         8.35         8.25 
TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-C4-A0EZ 
        5.59         3.65         4.67        12.82         2.07         8.98 
TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W 
        0.46         0.43         0.13         0.07         0.10         0.07 
TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ 
        0.10         0.10        12.92         4.90         7.20         5.46 
TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A7 
        5.19        16.31         1.84         2.53         2.14        18.41 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AF TCGA-DK-A1AG 
       19.00         8.91       130.88       112.44        17.62        15.62 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK 
        1.81        10.59         7.79       123.85        87.32         2.20 
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV 
        3.98         7.82         8.22        21.30        20.02         9.67 
TCGA-DK-A3WW TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 
        8.28       140.81        48.00        64.18        48.53        64.64 
TCGA-DK-A6B1 TCGA-DK-A6B5 TCGA-E5-A4TZ TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4XJ 
       67.36        32.28        15.35        24.66         0.10         0.53 
TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV 
        0.59         0.56         0.66         1.38         0.82         1.22 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
       12.89        15.68         8.94         6.87         4.01        12.43 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM 
       11.93        15.88        45.93        24.30        22.45        16.47 
TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS 
       12.82         5.52        13.18        46.78        19.79         1.97 
TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BR 
       22.98        14.93        14.96         3.62        12.13        13.38 
TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C0 
       11.01         6.87         5.36         6.84        27.45         6.87 
TCGA-FD-A62N TCGA-FD-A62P TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZF TCGA-FT-A3EE 
        2.66         6.28        15.19         7.13         4.08         3.25 
TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        6.48        61.94        30.61         5.69        26.93        35.24 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC 
        7.04        20.12         0.85        15.81         4.50        15.91 
TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
       14.07        17.75         1.12         7.73         2.10         3.12 
TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JW 
       20.98         2.20         6.41         7.66        11.31         6.41 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QK TCGA-GV-A40E 
        6.15         5.69         7.63         7.79         6.67         6.41 
TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
       19.07         1.51         6.74         8.75         3.45         4.67 
TCGA-K4-A4AB TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LC-A66R 
        2.50         6.48        10.52         1.81         4.27         6.35 
TCGA-LT-A5Z6 TCGA-PQ-A6FI TCGA-PQ-A6FN 
        3.45        12.23        16.67 

  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             0.49              0.07 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
            50.27            140.81 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
            13.48              7.79 
[1] "0.5 - 50.3 (13.5)" "0.1 - 140.8 (7.8)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D15V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  8P GAIN MUTATED         1        9        16        9
  8P GAIN WILD-TYPE       1       56        50       49
D15V3, multiclass
           clus
vv          8P GAIN MUTATED 8P GAIN WILD-TYPE
  STAGE I                 1                 1
  STAGE II                9                56
  STAGE III              16                50
  STAGE IV                9                49
                   vv
clus                T0+T1+T2 T3 T4
  8P GAIN MUTATED         11 21  3
  8P GAIN WILD-TYPE       48 69 25
D15V4, multiclass
          clus
vv         8P GAIN MUTATED 8P GAIN WILD-TYPE
  T0+T1+T2              11                48
  T3                    21                69
  T4                     3                25
                   vv
clus                N0 N1 N2 N3
  8P GAIN MUTATED   23  5  5  1
  8P GAIN WILD-TYPE 97 13 28  6
D15V5, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  N0              23                97
  N1               5                13
  N2               5                28
  N3               1                 6
                   vv
clus                M0 M1 MX
  8P GAIN MUTATED   22  1 14
  8P GAIN WILD-TYPE 81  4 72
D15V6, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  M0              22                81
  M1               1                 4
  MX              14                72
D15V7, binary
                   cls
clus                  0   1
  8P GAIN MUTATED     7  30
  8P GAIN WILD-TYPE  41 117
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED      7   30
  8P GAIN WILD-TYPE   41  117
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  FEMALE               7                41
  MALE                30               117
D15V8, continuous
D15V9, continuous
D15V10, continuous
D15V11, continuous

Clustering(16) Variable = 8Q GAIN MUTATION ANALYSIS
D16V1, survival
                   sevent
clus2                0  1
  8Q GAIN MUTATED   59 24
  8Q GAIN WILD-TYPE 73 32
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               83               105 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               24                32 
$`8Q GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20V 
       40.08         6.74        12.39        19.04        32.84         5.06 
TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LB TCGA-BT-A42E TCGA-C4-A0EZ 
        8.35         8.25        17.16         5.59         9.99         8.98 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47X TCGA-CU-A0YN 
        1.94        23.01         0.69         0.13         0.10        12.92 
TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1A7 
        5.46         5.19         1.84         2.53        31.40        18.41 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IN 
      130.88       112.44        16.14        10.59        87.32         8.22 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IU TCGA-DK-A3WX TCGA-DK-A3X1 TCGA-DK-A3X2 
       10.49        50.27        20.02        10.55        48.00        17.98 
TCGA-DK-A6B2 TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E5-A4U1 TCGA-E7-A4IJ TCGA-E7-A541 
       15.68        21.24        43.59        26.17         0.49         0.59 
TCGA-FD-A3B6 TCGA-FD-A3N6 TCGA-FD-A3SQ TCGA-FD-A43N TCGA-FD-A43U TCGA-FD-A5BR 
        6.87        15.88        46.78        22.98        14.93        13.38 
TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5C0 TCGA-FD-A5C1 
       37.15        11.01         5.36         5.69         6.87        49.68 
TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FT-A3EE 
        4.83         6.28         6.38         7.13         3.48         3.25 
TCGA-G2-A2EK TCGA-G2-A2ES TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3RB TCGA-GC-A3WC 
        5.69        17.26         2.89         2.24         4.50        17.75 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX 
        2.10         3.12        20.98         4.41         6.41         6.15 
TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-K4-A4AB TCGA-K4-A6FZ 
        5.69         7.63         7.79         4.14         2.50         1.81 
TCGA-K4-A6MB TCGA-LC-A66R TCGA-MV-A51V TCGA-PQ-A6FI TCGA-PQ-A6FN 
        4.27         6.35        13.48        12.23        16.67 

$`8Q GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20O TCGA-BT-A20P 
        7.33         2.66         6.58        11.93        12.16        17.88 
TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A2LD TCGA-BT-A3PH 
       19.50         5.06        14.89        14.96         3.65         4.67 
TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A47T TCGA-CF-A47V 
       12.82         2.07         0.46         0.43         0.07         0.10 
TCGA-CF-A47W TCGA-CF-A47Y TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3YL TCGA-DK-A1A5 
        0.07         0.10         4.90         7.20        16.31         2.14 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I2 
       19.00         8.91        17.62        15.62         1.81         7.79 
TCGA-DK-A2I4 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IT TCGA-DK-A3IV 
      123.85         2.20         3.98         7.82        21.30         9.67 
TCGA-DK-A3WW TCGA-DK-A3WY TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 
        8.28       140.81        64.18        48.53        64.64        67.36 
TCGA-DK-A6B5 TCGA-E5-A4TZ TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4XJ TCGA-E7-A5KE 
       32.28        15.35        24.66         0.10         0.53         0.56 
TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 
        0.66         1.38         0.82         1.22        12.89        15.68 
TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3NA TCGA-FD-A3SJ 
        8.94         4.01        12.43        11.93        45.93        24.30 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SR 
       22.45        16.47        12.82         5.52        13.18        19.79 
TCGA-FD-A3SS TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BU 
        1.97        14.93        14.96         3.62        12.13         6.87 
TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A62N TCGA-FJ-A3Z7 TCGA-FJ-A3ZF TCGA-FT-A61P 
        6.84        27.45         2.66        15.19         4.08         6.48 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A3IB TCGA-G2-A3IE 
       61.94        30.61        26.93        35.24         7.04        20.12 
TCGA-G2-A3VY TCGA-GC-A3OO TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GD-A2C5 
        0.85        15.81        15.91        14.07         1.12         7.73 
TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3QK TCGA-GV-A40E 
        2.20         6.41         7.66        11.31         6.67         6.41 
TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
       19.07         1.51         6.74         8.75         3.45         4.67 
TCGA-K4-A4AC TCGA-K4-A54R TCGA-LT-A5Z6 
        6.48        10.52         3.45 

  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             0.10              0.07 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           130.88            140.81 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             8.25              8.28 
[1] "0.1 - 130.9 (8.2)" "0.1 - 140.8 (8.3)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
[1] "hr=" "1.1"
D16V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  8Q GAIN MUTATED         2       25        33       24
  8Q GAIN WILD-TYPE       0       40        33       34
D16V3, multiclass
           clus
vv          8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  STAGE I                 2                 0
  STAGE II               25                40
  STAGE III              33                33
  STAGE IV               24                34
                   vv
clus                T0+T1+T2 T3 T4
  8Q GAIN MUTATED         27 42 12
  8Q GAIN WILD-TYPE       32 48 16
D16V4, multiclass
          clus
vv         8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  T0+T1+T2              27                32
  T3                    42                48
  T4                    12                16
                   vv
clus                N0 N1 N2 N3
  8Q GAIN MUTATED   54 10 14  2
  8Q GAIN WILD-TYPE 66  8 19  5
D16V5, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  N0              54                66
  N1              10                 8
  N2              14                19
  N3               2                 5
                   vv
clus                M0 M1 MX
  8Q GAIN MUTATED   44  2 40
  8Q GAIN WILD-TYPE 59  3 46
D16V6, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  M0              44                59
  M1               2                 3
  MX              40                46
D16V7, binary
                   cls
clus                 0  1
  8Q GAIN MUTATED   20 66
  8Q GAIN WILD-TYPE 28 81
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     20   66
  8Q GAIN WILD-TYPE   28   81
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  FEMALE              20                28
  MALE                66                81
D16V8, continuous
D16V9, continuous
D16V10, continuous
D16V11, continuous

Clustering(17) Variable = 9P GAIN MUTATION ANALYSIS
D17V1, survival
                   sevent
clus2                 0   1
  9P GAIN MUTATED    28   4
  9P GAIN WILD-TYPE 104  52
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               32               156 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                4                52 
$`9P GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A3JM TCGA-BT-A2LA TCGA-BT-A3PJ TCGA-CU-A0YN TCGA-CU-A0YR 
       40.08         6.74        17.16        12.82        12.92         7.20 
TCGA-CU-A3QU TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IM 
        5.19       130.88       112.44        10.59        87.32         7.82 
TCGA-DK-A6B6 TCGA-FD-A3B3 TCGA-FD-A3B6 TCGA-FD-A3N5 TCGA-FD-A3SL TCGA-FD-A43P 
       21.24        12.89         6.87        11.93        22.45        14.93 
TCGA-FD-A5BT TCGA-FD-A62N TCGA-FJ-A3ZE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-GC-A3I6 
       11.01         2.66         3.48        61.94        30.61         2.24 
TCGA-GC-A3RC TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GV-A3JZ TCGA-GV-A3QI TCGA-GV-A40G 
       15.91         7.73         2.10         5.69         4.14        19.07 
TCGA-K4-A6FZ TCGA-LC-A66R 
        1.81         6.35 

$`9P GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A5ZZ TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
        7.33         2.66        12.39         6.58        11.93        19.04 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       32.84        12.16        17.88        19.50         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LB TCGA-BT-A2LD 
       14.96         5.06         8.35         8.25         5.59         3.65 
TCGA-BT-A3PH TCGA-BT-A3PK TCGA-BT-A42E TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 
        4.67         2.07         9.99         8.98         1.94        23.01 
TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V 
        0.46         0.43         0.69         0.13         0.07         0.10 
TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YO TCGA-CU-A3KJ TCGA-CU-A3YL 
        0.07         0.10         0.10         4.90         5.46        16.31 
TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
        1.84         2.53         2.14        31.40        18.41        19.00 
TCGA-DK-A1AB TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I2 
        8.91        16.14        17.62        15.62         1.81         7.79 
TCGA-DK-A2I4 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS 
      123.85         2.20         3.98         8.22        10.49        50.27 
TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
       21.30        20.02         9.67         8.28        10.55       140.81 
TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 
       48.00        17.98        64.18        48.53        64.64        67.36 
TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3X6 
       15.68        32.28        43.59        15.35        26.17        24.66 
TCGA-E7-A3Y1 TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A5KF 
        0.10         0.49         0.53         0.59         0.56         0.66 
TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B7 
        1.38         0.82         1.22        15.68         8.94         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SM TCGA-FD-A3SN 
       12.43        15.88        45.93        24.30        16.47        12.82 
TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N 
        5.52        13.18        46.78        19.79         1.97        22.98 
TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS 
       14.96        14.93         3.62        12.13        13.38        37.15 
TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C0 
        6.87         5.36         5.69         6.84        27.45         6.87 
TCGA-FD-A5C1 TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 
       49.68         4.83         6.28         6.38        15.19         7.13 
TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        4.08         3.25         6.48         5.69        26.93        35.24 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3OO 
       17.26         7.04        20.12         0.85         2.89        15.81 
TCGA-GC-A3RB TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A3OQ TCGA-GD-A3OS 
        4.50        14.07        17.75         1.12         3.12        20.98 
TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW 
        2.20         6.41         7.66        11.31         4.41         6.41 
TCGA-GV-A3JX TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QK TCGA-GV-A40E TCGA-H4-A2HO 
        6.15         7.63         7.79         6.67         6.41         1.51 
TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A4AC 
        6.74         8.75         3.45         4.67         2.50         6.48 
TCGA-K4-A54R TCGA-K4-A6MB TCGA-LT-A5Z6 TCGA-MV-A51V TCGA-PQ-A6FI TCGA-PQ-A6FN 
       10.52         4.27         3.45        13.48        12.23        16.67 

  9P GAIN MUTATED 9P GAIN WILD-TYPE 
             1.81              0.07 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
           130.88            140.81 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
           11.470             8.005 
[1] "1.8 - 130.9 (11.5)" "0.1 - 140.8 (8.0)" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
[1] "hr=" "3.3"
D17V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  9P GAIN MUTATED         1        9        12       10
  9P GAIN WILD-TYPE       1       56        54       48
D17V3, multiclass
           clus
vv          9P GAIN MUTATED 9P GAIN WILD-TYPE
  STAGE I                 1                 1
  STAGE II                9                56
  STAGE III              12                54
  STAGE IV               10                48
                   vv
clus                T0+T1+T2 T3 T4
  9P GAIN MUTATED         10 14  4
  9P GAIN WILD-TYPE       49 76 24
D17V4, multiclass
          clus
vv         9P GAIN MUTATED 9P GAIN WILD-TYPE
  T0+T1+T2              10                49
  T3                    14                76
  T4                     4                24
                   vv
clus                 N0  N1  N2  N3
  9P GAIN MUTATED    19   2   6   3
  9P GAIN WILD-TYPE 101  16  27   4
D17V5, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  N0              19               101
  N1               2                16
  N2               6                27
  N3               3                 4
                   vv
clus                M0 M1 MX
  9P GAIN MUTATED   16  2 14
  9P GAIN WILD-TYPE 87  3 72
D17V6, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  M0              16                87
  M1               2                 3
  MX              14                72
D17V7, binary
                   cls
clus                  0   1
  9P GAIN MUTATED     6  26
  9P GAIN WILD-TYPE  42 121
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      6   26
  9P GAIN WILD-TYPE   42  121
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  FEMALE               6                42
  MALE                26               121
D17V8, continuous
D17V9, continuous
D17V10, continuous
D17V11, continuous

Clustering(18) Variable = 9Q GAIN MUTATION ANALYSIS
D18V1, survival
                   sevent
clus2                 0   1
  9Q GAIN MUTATED    21   5
  9Q GAIN WILD-TYPE 111  51
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               26               162 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
                5                51 
$`9Q GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A3JM TCGA-BT-A2LA TCGA-C4-A0F0 TCGA-CU-A0YN TCGA-DK-A1AC 
       40.08         6.74        17.16         1.94        12.92       130.88 
TCGA-DK-A2I1 TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A6B6 TCGA-FD-A3B3 TCGA-FD-A3B4 
       10.59         7.82         8.22        21.24        12.89        15.68 
TCGA-FD-A3SL TCGA-FD-A5BT TCGA-FD-A5BV TCGA-FD-A62N TCGA-FJ-A3ZE TCGA-G2-A2EF 
       22.45        11.01         5.36         2.66         3.48        61.94 
TCGA-G2-A2EJ TCGA-GC-A3I6 TCGA-GC-A3RC TCGA-GC-A3WC TCGA-GC-A3YS TCGA-H4-A2HQ 
       30.61         2.24        15.91        17.75         1.12         6.74 
TCGA-K4-A6FZ TCGA-LC-A66R 
        1.81         6.35 

$`9Q GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A5ZZ TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
        7.33         2.66        12.39         6.58        11.93        19.04 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       32.84        12.16        17.88        19.50         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LB TCGA-BT-A2LD 
       14.96         5.06         8.35         8.25         5.59         3.65 
TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-BT-A42E TCGA-C4-A0EZ TCGA-C4-A0F6 
        4.67        12.82         2.07         9.99         8.98        23.01 
TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V 
        0.46         0.43         0.69         0.13         0.07         0.10 
TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ 
        0.07         0.10         0.10         4.90         7.20         5.46 
TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 
        5.19        16.31         1.84         2.53         2.14        31.40 
TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
       18.41        19.00         8.91       112.44        16.14        17.62 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK 
       15.62         1.81         7.79       123.85        87.32         2.20 
TCGA-DK-A3IL TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV 
        3.98        10.49        50.27        21.30        20.02         9.67 
TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AV 
        8.28        10.55       140.81        48.00        17.98        64.18 
TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-E5-A2PC 
       48.53        64.64        67.36        15.68        32.28        43.59 
TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4IJ TCGA-E7-A4XJ 
       15.35        26.17        24.66         0.10         0.49         0.53 
TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV 
        0.59         0.56         0.66         1.38         0.82         1.22 
TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
        8.94         6.87         4.01        12.43        11.93        15.88 
TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP 
       45.93        24.30        16.47        12.82         5.52        13.18 
TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43S 
       46.78        19.79         1.97        22.98        14.93        14.96 
TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BU 
       14.93         3.62        12.13        13.38        37.15         6.87 
TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A5C1 TCGA-FD-A62O 
        5.69         6.84        27.45         6.87        49.68         4.83 
TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZF TCGA-FT-A3EE 
        6.28         6.38        15.19         7.13         4.08         3.25 
TCGA-FT-A61P TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB 
        6.48         5.69        26.93        35.24        17.26         7.04 
TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RD 
       20.12         0.85         2.89        15.81         4.50        14.07 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42P 
        7.73         2.10         3.12        20.98         2.20         6.41 
TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ 
        7.66        11.31         4.41         6.41         6.15         5.69 
TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G 
        7.63         7.79         4.14         6.67         6.41        19.07 
TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A4AC 
        1.51         8.75         3.45         4.67         2.50         6.48 
TCGA-K4-A54R TCGA-K4-A6MB TCGA-LT-A5Z6 TCGA-MV-A51V TCGA-PQ-A6FI TCGA-PQ-A6FN 
       10.52         4.27         3.45        13.48        12.23        16.67 

  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
             1.12              0.07 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
           130.88            140.81 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
            10.80              8.02 
[1] "1.1 - 130.9 (10.8)" "0.1 - 140.8 (8.0)" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
[1] "hr=" "1.8"
D18V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  9Q GAIN MUTATED         1        6        14        5
  9Q GAIN WILD-TYPE       1       59        52       53
D18V3, multiclass
           clus
vv          9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  STAGE I                 1                 1
  STAGE II                6                59
  STAGE III              14                52
  STAGE IV                5                53
                   vv
clus                T0+T1+T2 T3 T4
  9Q GAIN MUTATED          4 13  4
  9Q GAIN WILD-TYPE       55 77 24
D18V4, multiclass
          clus
vv         9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  T0+T1+T2               4                55
  T3                    13                77
  T4                     4                24
                   vv
clus                 N0  N1  N2  N3
  9Q GAIN MUTATED    19   1   2   1
  9Q GAIN WILD-TYPE 101  17  31   6
D18V5, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  N0              19               101
  N1               1                17
  N2               2                31
  N3               1                 6
                   vv
clus                M0 M1 MX
  9Q GAIN MUTATED   13  3 10
  9Q GAIN WILD-TYPE 90  2 76
D18V6, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  M0              13                90
  M1               3                 2
  MX              10                76
D18V7, binary
                   cls
clus                  0   1
  9Q GAIN MUTATED     8  18
  9Q GAIN WILD-TYPE  40 129
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      8   18
  9Q GAIN WILD-TYPE   40  129
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  FEMALE               8                40
  MALE                18               129
D18V8, continuous
D18V9, continuous
D18V10, continuous
D18V11, continuous

Clustering(19) Variable = 10P GAIN MUTATION ANALYSIS
D19V1, survival
                    sevent
clus2                  0   1
  10P GAIN MUTATED    29  21
  10P GAIN WILD-TYPE 103  35
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                50                138 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                21                 35 
$`10P GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A20N TCGA-BT-A20R TCGA-BT-A20V 
       40.08         2.66         6.58        32.84         5.06         5.06 
TCGA-BT-A20W TCGA-BT-A2LB TCGA-BT-A3PJ TCGA-BT-A42E TCGA-CF-A1HS TCGA-CU-A0YN 
        8.35         5.59        12.82         9.99         0.43        12.92 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AD TCGA-DK-A2I6 TCGA-DK-A3IL 
        2.53         2.14        31.40       112.44        87.32         3.98 
TCGA-DK-A3IN TCGA-DK-A3X1 TCGA-DK-A6B2 TCGA-DK-A6B6 TCGA-E5-A4U1 TCGA-FD-A3B6 
        8.22        48.00        15.68        21.24        26.17         6.87 
TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SS TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BZ 
       45.93        24.30         1.97        13.38        37.15        27.45 
TCGA-FD-A5C0 TCGA-FD-A5C1 TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2ES TCGA-G2-A3IE 
        6.87        49.68         3.25         6.48        17.26        20.12 
TCGA-GC-A3RB TCGA-GD-A2C5 TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GV-A3JW 
        4.50         7.73        20.98         2.20         6.41         6.41 
TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A40E TCGA-K4-A3WS TCGA-K4-A4AC 
        5.69         7.63         7.79         6.41         8.75         6.48 
TCGA-K4-A54R TCGA-K4-A6FZ 
       10.52         1.81 

$`10P GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O 
        7.33         6.74        12.39        11.93        19.04        12.16 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20X TCGA-BT-A2LA 
       17.88        19.50        14.89        14.96         8.25        17.16 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PK TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 
        3.65         4.67         2.07         8.98         1.94        23.01 
TCGA-CF-A1HR TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W 
        0.46         0.69         0.13         0.07         0.10         0.07 
TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU 
        0.10         0.10         4.90         7.20         5.46         5.19 
TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC 
       16.31         1.84        18.41        19.00         8.91       130.88 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
       16.14        17.62        15.62         1.81        10.59         7.79 
TCGA-DK-A2I4 TCGA-DK-A3IK TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT 
      123.85         2.20         7.82        10.49        50.27        21.30 
TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X2 
       20.02         9.67         8.28        10.55       140.81        17.98 
TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B5 TCGA-E5-A2PC 
       64.18        48.53        64.64        67.36        32.28        43.59 
TCGA-E5-A4TZ TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A541 
       15.35        24.66         0.10         0.49         0.53         0.59 
TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B3 
        0.56         0.66         1.38         0.82         1.22        12.89 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
       15.68         8.94         4.01        12.43        11.93        15.88 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ 
       22.45        16.47        12.82         5.52        13.18        46.78 
TCGA-FD-A3SR TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43X 
       19.79        22.98        14.93        14.96        14.93         3.62 
TCGA-FD-A43Y TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BY 
       12.13        11.01         6.87         5.36         5.69         6.84 
TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 
        2.66         4.83         6.28         6.38        15.19         7.13 
TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        3.48         4.08        61.94        30.61         5.69        26.93 
TCGA-G2-A2EO TCGA-G2-A3IB TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO 
       35.24         7.04         0.85         2.89         2.24        15.81 
TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A3OP TCGA-GD-A3OQ 
       15.91        14.07        17.75         1.12         2.10         3.12 
TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3QI TCGA-GV-A3QK 
        7.66        11.31         4.41         6.15         4.14         6.67 
TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A4AB 
       19.07         1.51         6.74         3.45         4.67         2.50 
TCGA-K4-A6MB TCGA-LC-A66R TCGA-LT-A5Z6 TCGA-MV-A51V TCGA-PQ-A6FI TCGA-PQ-A6FN 
        4.27         6.35         3.45        13.48        12.23        16.67 

  10P GAIN MUTATED 10P GAIN WILD-TYPE 
              0.43               0.07 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
            112.44             140.81 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
             8.005              8.595 
[1] "0.4 - 112.4 (8.0)" "0.1 - 140.8 (8.6)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D19V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  10P GAIN MUTATED         1       17        16       18
  10P GAIN WILD-TYPE       1       48        50       40
D19V3, multiclass
           clus
vv          10P GAIN MUTATED 10P GAIN WILD-TYPE
  STAGE I                  1                  1
  STAGE II                17                 48
  STAGE III               16                 50
  STAGE IV                18                 40
                    vv
clus                 T0+T1+T2 T3 T4
  10P GAIN MUTATED         16 26  7
  10P GAIN WILD-TYPE       43 64 21
D19V4, multiclass
          clus
vv         10P GAIN MUTATED 10P GAIN WILD-TYPE
  T0+T1+T2               16                 43
  T3                     26                 64
  T4                      7                 21
                    vv
clus                 N0 N1 N2 N3
  10P GAIN MUTATED   27  6 11  3
  10P GAIN WILD-TYPE 93 12 22  4
D19V5, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  N0               27                 93
  N1                6                 12
  N2               11                 22
  N3                3                  4
                    vv
clus                 M0 M1 MX
  10P GAIN MUTATED   26  0 28
  10P GAIN WILD-TYPE 77  5 58
D19V6, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  M0               26                 77
  M1                0                  5
  MX               28                 58
D19V7, binary
                    cls
clus                   0   1
  10P GAIN MUTATED    12  42
  10P GAIN WILD-TYPE  36 105
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED     12   42
  10P GAIN WILD-TYPE   36  105
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  FEMALE               12                 36
  MALE                 42                105
D19V8, continuous
D19V9, continuous
D19V10, continuous
D19V11, continuous

Clustering(20) Variable = 10Q GAIN MUTATION ANALYSIS
D20V1, survival
                    sevent
clus2                  0   1
  10Q GAIN MUTATED     8   6
  10Q GAIN WILD-TYPE 124  50
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                14                174 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 6                 50 
$`10Q GAIN MUTATED`
TCGA-BT-A0S7 TCGA-BT-A20R TCGA-BT-A20V TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1AD 
        6.58         5.06         5.06         2.53        31.40       112.44 
TCGA-DK-A3IN TCGA-DK-A6B2 TCGA-E5-A4U1 TCGA-FD-A3B6 TCGA-FD-A3SS TCGA-FD-A5BR 
        8.22        15.68        26.17         6.87         1.97        13.38 
TCGA-FD-A5BZ TCGA-GC-A3RB 
       27.45         4.50 

$`10Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0YX 
       40.08         7.33         2.66         6.74        12.39        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T 
       19.04        32.84        12.16        17.88        19.50        14.89 
TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LB TCGA-BT-A2LD 
       14.96         8.35         8.25        17.16         5.59         3.65 
TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-BT-A42E TCGA-C4-A0EZ TCGA-C4-A0F0 
        4.67        12.82         2.07         9.99         8.98         1.94 
TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T 
       23.01         0.46         0.43         0.69         0.13         0.07 
TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A0YO 
        0.10         0.07         0.10         0.10        12.92         4.90 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A5 
        7.20         5.46         5.19        16.31         1.84         2.14 
TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF 
       18.41        19.00         8.91       130.88        16.14        17.62 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 
       15.62         1.81        10.59         7.79       123.85        87.32 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT 
        2.20         3.98         7.82        10.49        50.27        21.30 
TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 
       20.02         9.67         8.28        10.55       140.81        48.00 
TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B5 
       17.98        64.18        48.53        64.64        67.36        32.28 
TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4IJ 
       21.24        43.59        15.35        24.66         0.10         0.49 
TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 
        0.53         0.59         0.56         0.66         1.38         0.82 
TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 
        1.22        12.89        15.68         8.94         4.01        12.43 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM 
       11.93        15.88        45.93        24.30        22.45        16.47 
TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A43N 
       12.82         5.52        13.18        46.78        19.79        22.98 
TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BS 
       14.93        14.96        14.93         3.62        12.13        37.15 
TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5C0 
       11.01         6.87         5.36         5.69         6.84         6.87 
TCGA-FD-A5C1 TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 
       49.68         2.66         4.83         6.28         6.38        15.19 
TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EF 
        7.13         3.48         4.08         3.25         6.48        61.94 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB 
       30.61         5.69        26.93        35.24        17.26         7.04 
TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RC 
       20.12         0.85         2.89         2.24        15.81        15.91 
TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
       14.07        17.75         1.12         7.73         2.10         3.12 
TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV 
       20.98         2.20         6.41         7.66        11.31         4.41 
TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI 
        6.41         6.15         5.69         7.63         7.79         4.14 
TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS 
        6.67         6.41        19.07         1.51         6.74         8.75 
TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6FZ 
        3.45         4.67         2.50         6.48        10.52         1.81 
TCGA-K4-A6MB TCGA-LC-A66R TCGA-LT-A5Z6 TCGA-MV-A51V TCGA-PQ-A6FI TCGA-PQ-A6FN 
        4.27         6.35         3.45        13.48        12.23        16.67 

  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              1.97               0.07 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
            112.44             140.81 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
             7.545              8.315 
[1] "2.0 - 112.4 (7.5)" "0.1 - 140.8 (8.3)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D20V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  10Q GAIN MUTATED         0        4         4        8
  10Q GAIN WILD-TYPE       2       61        62       50
D20V3, multiclass
           clus
vv          10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  STAGE I                  0                  2
  STAGE II                 4                 61
  STAGE III                4                 62
  STAGE IV                 8                 50
                    vv
clus                 T0+T1+T2 T3 T4
  10Q GAIN MUTATED          6  7  4
  10Q GAIN WILD-TYPE       53 83 24
D20V4, multiclass
          clus
vv         10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  T0+T1+T2                6                 53
  T3                      7                 83
  T4                      4                 24
                    vv
clus                  N0  N1  N2  N3
  10Q GAIN MUTATED     8   4   4   1
  10Q GAIN WILD-TYPE 112  14  29   6
D20V5, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  N0                8                112
  N1                4                 14
  N2                4                 29
  N3                1                  6
                    vv
clus                 M0 M1 MX
  10Q GAIN MUTATED   11  0  6
  10Q GAIN WILD-TYPE 92  5 80
D20V6, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  M0               11                 92
  M1                0                  5
  MX                6                 80
D20V7, binary
                    cls
clus                   0   1
  10Q GAIN MUTATED     3  14
  10Q GAIN WILD-TYPE  45 133
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      3   14
  10Q GAIN WILD-TYPE   45  133
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  FEMALE                3                 45
  MALE                 14                133
D20V8, continuous
D20V9, continuous
D20V10, continuous
D20V11, continuous

Clustering(21) Variable = 11P GAIN MUTATION ANALYSIS
D21V1, survival
                    sevent
clus2                  0   1
  11P GAIN MUTATED    11   8
  11P GAIN WILD-TYPE 121  48
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                19                169 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 8                 48 
$`11P GAIN MUTATED`
TCGA-BL-A13J TCGA-BT-A3PJ TCGA-CU-A0YN TCGA-CU-A0YO TCGA-DK-A3IV TCGA-DK-A3WX 
        2.66        12.82        12.92         4.90         9.67        10.55 
TCGA-E7-A5KF TCGA-E7-A7DV TCGA-FD-A3B6 TCGA-FD-A5BT TCGA-FD-A62P TCGA-GC-A3I6 
        0.66         1.22         6.87        11.01         6.28         2.24 
TCGA-GC-A3RC TCGA-GV-A3JZ TCGA-GV-A3QI TCGA-GV-A40E TCGA-K4-A4AC TCGA-LC-A66R 
       15.91         5.69         4.14         6.41         6.48         6.35 
TCGA-PQ-A6FI 
       12.23 

$`11P GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 TCGA-BT-A0YX 
       40.08         7.33         6.74        12.39         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.04        32.84        12.16        17.88        19.50         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89        14.96         5.06         8.35         8.25        17.16 
TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PK TCGA-BT-A42E TCGA-C4-A0EZ 
        5.59         3.65         4.67         2.07         9.99         8.98 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A47S 
        1.94        23.01         0.46         0.43         0.69         0.13 
TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YR 
        0.07         0.10         0.07         0.10         0.10         7.20 
TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A5 
        5.46         5.19        16.31         1.84         2.53         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD 
       31.40        18.41        19.00         8.91       130.88       112.44 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
       16.14        17.62        15.62         1.81        10.59         7.79 
TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN 
      123.85        87.32         2.20         3.98         7.82         8.22 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WY 
       10.49        50.27        21.30        20.02         8.28       140.81 
TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 
       48.00        17.98        64.18        48.53        64.64        67.36 
TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E5-A4U1 
       15.68        32.28        21.24        43.59        15.35        26.17 
TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KE 
       24.66         0.10         0.49         0.53         0.59         0.56 
TCGA-E7-A677 TCGA-E7-A678 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B7 
        1.38         0.82        12.89        15.68         8.94         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL 
       12.43        11.93        15.88        45.93        24.30        22.45 
TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR 
       16.47        12.82         5.52        13.18        46.78        19.79 
TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43X 
        1.97        22.98        14.93        14.96        14.93         3.62 
TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BX 
       12.13        13.38        37.15         6.87         5.36         5.69 
TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A5C1 TCGA-FD-A62N TCGA-FD-A62O 
        6.84        27.45         6.87        49.68         2.66         4.83 
TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE 
        6.38        15.19         7.13         3.48         4.08         3.25 
TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        6.48        61.94        30.61         5.69        26.93        35.24 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3OO 
       17.26         7.04        20.12         0.85         2.89        15.81 
TCGA-GC-A3RB TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP 
        4.50        14.07        17.75         1.12         7.73         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R 
        3.12        20.98         2.20         6.41         7.66        11.31 
TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QK 
        4.41         6.41         6.15         7.63         7.79         6.67 
TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
       19.07         1.51         6.74         8.75         3.45         4.67 
TCGA-K4-A4AB TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LT-A5Z6 TCGA-MV-A51V 
        2.50        10.52         1.81         4.27         3.45        13.48 
TCGA-PQ-A6FN 
       16.67 

  11P GAIN MUTATED 11P GAIN WILD-TYPE 
              0.66               0.07 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
             15.91             140.81 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
              6.41               8.75 
[1] "0.7 - 15.9 (6.4)"  "0.1 - 140.8 (8.8)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
[1] "hr=" "2.6"
D21V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  11P GAIN MUTATED         0        8         6        5
  11P GAIN WILD-TYPE       2       57        60       53
D21V3, multiclass
           clus
vv          11P GAIN MUTATED 11P GAIN WILD-TYPE
  STAGE I                  0                  2
  STAGE II                 8                 57
  STAGE III                6                 60
  STAGE IV                 5                 53
                    vv
clus                 T0+T1+T2 T3 T4
  11P GAIN MUTATED          6  7  4
  11P GAIN WILD-TYPE       53 83 24
D21V4, multiclass
          clus
vv         11P GAIN MUTATED 11P GAIN WILD-TYPE
  T0+T1+T2                6                 53
  T3                      7                 83
  T4                      4                 24
                    vv
clus                  N0  N1  N2  N3
  11P GAIN MUTATED    11   0   3   3
  11P GAIN WILD-TYPE 109  18  30   4
D21V5, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  N0               11                109
  N1                0                 18
  N2                3                 30
  N3                3                  4
                    vv
clus                 M0 M1 MX
  11P GAIN MUTATED    8  0 11
  11P GAIN WILD-TYPE 95  5 75
D21V6, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  M0                8                 95
  M1                0                  5
  MX               11                 75
D21V7, binary
                    cls
clus                   0   1
  11P GAIN MUTATED     1  18
  11P GAIN WILD-TYPE  47 129
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      1   18
  11P GAIN WILD-TYPE   47  129
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  FEMALE                1                 47
  MALE                 18                129
D21V8, continuous
D21V9, continuous
D21V10, continuous
D21V11, continuous

Clustering(22) Variable = 11Q GAIN MUTATION ANALYSIS
D22V1, survival
                    sevent
clus2                  0   1
  11Q GAIN MUTATED    16   9
  11Q GAIN WILD-TYPE 116  47
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                25                163 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 9                 47 
$`11Q GAIN MUTATED`
TCGA-BL-A13J TCGA-BT-A3PJ TCGA-C4-A0F6 TCGA-CU-A0YN TCGA-CU-A0YO TCGA-DK-A1A3 
        2.66        12.82        23.01        12.92         4.90         2.53 
TCGA-DK-A3IM TCGA-DK-A3WX TCGA-DK-A3X2 TCGA-E7-A5KF TCGA-E7-A7DV TCGA-FD-A3B6 
        7.82        10.55        17.98         0.66         1.22         6.87 
TCGA-FD-A3NA TCGA-FD-A43P TCGA-FD-A5BR TCGA-FD-A5BT TCGA-FD-A62P TCGA-FJ-A3Z7 
       45.93        14.93        13.38        11.01         6.28        15.19 
TCGA-GC-A3I6 TCGA-GC-A3RC TCGA-GV-A3QF TCGA-GV-A40E TCGA-K4-A4AC TCGA-LC-A66R 
        2.24        15.91         7.63         6.41         6.48         6.35 
TCGA-PQ-A6FI 
       12.23 

$`11Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 TCGA-BT-A0YX 
       40.08         7.33         6.74        12.39         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.04        32.84        12.16        17.88        19.50         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89        14.96         5.06         8.35         8.25        17.16 
TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PK TCGA-BT-A42E TCGA-C4-A0EZ 
        5.59         3.65         4.67         2.07         9.99         8.98 
TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T 
        1.94         0.46         0.43         0.69         0.13         0.07 
TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YR TCGA-CU-A3KJ 
        0.10         0.07         0.10         0.10         7.20         5.46 
TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 
        5.19        16.31         1.84         2.14        31.40        18.41 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
       19.00         8.91       130.88       112.44        16.14        17.62 
TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 
       15.62         1.81        10.59         7.79       123.85        87.32 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT 
        2.20         3.98         8.22        10.49        50.27        21.30 
TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A6AV 
       20.02         9.67         8.28       140.81        48.00        64.18 
TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-DK-A6B6 
       48.53        64.64        67.36        15.68        32.28        21.24 
TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4IJ 
       43.59        15.35        26.17        24.66         0.10         0.49 
TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A677 TCGA-E7-A678 TCGA-FD-A3B3 
        0.53         0.59         0.56         1.38         0.82        12.89 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
       15.68         8.94         4.01        12.43        11.93        15.88 
TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP 
       24.30        22.45        16.47        12.82         5.52        13.18 
TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43S TCGA-FD-A43U 
       46.78        19.79         1.97        22.98        14.96        14.93 
TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BS TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BX 
        3.62        12.13        37.15         6.87         5.36         5.69 
TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A5C1 TCGA-FD-A62N TCGA-FD-A62O 
        6.84        27.45         6.87        49.68         2.66         4.83 
TCGA-FD-A62S TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-FT-A61P 
        6.38         7.13         3.48         4.08         3.25         6.48 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
       61.94        30.61         5.69        26.93        35.24        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3OO TCGA-GC-A3RB 
        7.04        20.12         0.85         2.89        15.81         4.50 
TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
       14.07        17.75         1.12         7.73         2.10         3.12 
TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV 
       20.98         2.20         6.41         7.66        11.31         4.41 
TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK 
        6.41         6.15         5.69         7.79         4.14         6.67 
TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
       19.07         1.51         6.74         8.75         3.45         4.67 
TCGA-K4-A4AB TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LT-A5Z6 TCGA-MV-A51V 
        2.50        10.52         1.81         4.27         3.45        13.48 
TCGA-PQ-A6FN 
       16.67 

  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              0.66               0.07 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
             45.93             140.81 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              7.82               8.28 
[1] "0.7 - 45.9 (7.8)"  "0.1 - 140.8 (8.3)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D22V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  11Q GAIN MUTATED         0       10         7        8
  11Q GAIN WILD-TYPE       2       55        59       50
D22V3, multiclass
           clus
vv          11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  STAGE I                  0                  2
  STAGE II                10                 55
  STAGE III                7                 59
  STAGE IV                 8                 50
                    vv
clus                 T0+T1+T2 T3 T4
  11Q GAIN MUTATED          9 11  4
  11Q GAIN WILD-TYPE       50 79 24
D22V4, multiclass
          clus
vv         11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  T0+T1+T2                9                 50
  T3                     11                 79
  T4                      4                 24
                    vv
clus                  N0  N1  N2  N3
  11Q GAIN MUTATED    15   0   7   2
  11Q GAIN WILD-TYPE 105  18  26   5
D22V5, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  N0               15                105
  N1                0                 18
  N2                7                 26
  N3                2                  5
                    vv
clus                 M0 M1 MX
  11Q GAIN MUTATED   11  0 14
  11Q GAIN WILD-TYPE 92  5 72
D22V6, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  M0               11                 92
  M1                0                  5
  MX               14                 72
D22V7, binary
                    cls
clus                   0   1
  11Q GAIN MUTATED     2  23
  11Q GAIN WILD-TYPE  46 124
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      2   23
  11Q GAIN WILD-TYPE   46  124
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  FEMALE                2                 46
  MALE                 23                124
D22V8, continuous
D22V9, continuous
D22V10, continuous
D22V11, continuous

Clustering(23) Variable = 12P GAIN MUTATION ANALYSIS
D23V1, survival
                    sevent
clus2                 0  1
  12P GAIN MUTATED   38 20
  12P GAIN WILD-TYPE 94 36
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                58                130 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                20                 36 
$`12P GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A3JM TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20P TCGA-BT-A20R 
       40.08         6.74        19.04        32.84        17.88         5.06 
TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PJ TCGA-BT-A3PK 
        5.06         8.25         5.59         3.65        12.82         2.07 
TCGA-BT-A42E TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A5W6 TCGA-DK-A1A3 
        9.99        12.92         4.90         7.20         1.84         2.53 
TCGA-DK-A1A6 TCGA-DK-A3IM TCGA-DK-A3IS TCGA-DK-A3WX TCGA-DK-A3X1 TCGA-DK-A6AV 
       31.40         7.82        50.27        10.55        48.00        64.18 
TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-DK-A6B6 TCGA-E7-A4IJ TCGA-E7-A5KE TCGA-FD-A3B3 
       67.36        15.68        21.24         0.49         0.56        12.89 
TCGA-FD-A3B6 TCGA-FD-A3NA TCGA-FD-A3SS TCGA-FD-A43P TCGA-FD-A5BS TCGA-FD-A5BV 
        6.87        45.93         1.97        14.93        37.15         5.36 
TCGA-FD-A5BZ TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FT-A61P TCGA-G2-A2EO 
       27.45         6.28         6.38        15.19         6.48        35.24 
TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RD TCGA-GV-A3JZ 
        0.85         2.89         2.24        15.81        14.07         5.69 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-K4-A3WU 
        7.79         4.14         6.67         6.41        19.07         3.45 
TCGA-K4-A3WV TCGA-K4-A4AC TCGA-K4-A6FZ TCGA-MV-A51V 
        4.67         6.48         1.81        13.48 

$`12P GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A5ZZ TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20O 
        7.33         2.66        12.39         6.58        11.93        12.16 
TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A2LA TCGA-BT-A3PH 
       19.50        14.89        14.96         8.35        17.16         4.67 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C 
        8.98         1.94        23.01         0.46         0.43         0.69 
TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y 
        0.13         0.07         0.10         0.07         0.10         0.10 
TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A5 TCGA-DK-A1A7 TCGA-DK-A1AA 
        5.46         5.19        16.31         2.14        18.41        19.00 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        8.91       130.88       112.44        16.14        17.62        15.62 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK 
        1.81        10.59         7.79       123.85        87.32         2.20 
TCGA-DK-A3IL TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV 
        3.98         8.22        10.49        21.30        20.02         9.67 
TCGA-DK-A3WW TCGA-DK-A3WY TCGA-DK-A3X2 TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B5 
        8.28       140.81        17.98        48.53        64.64        32.28 
TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4XJ 
       43.59        15.35        26.17        24.66         0.10         0.53 
TCGA-E7-A541 TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B4 
        0.59         0.66         1.38         0.82         1.22        15.68 
TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3SJ 
        8.94         4.01        12.43        11.93        15.88        24.30 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ 
       22.45        16.47        12.82         5.52        13.18        46.78 
TCGA-FD-A3SR TCGA-FD-A43N TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A43Y 
       19.79        22.98        14.96        14.93         3.62        12.13 
TCGA-FD-A5BR TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5C0 
       13.38        11.01         6.87         5.69         6.84         6.87 
TCGA-FD-A5C1 TCGA-FD-A62N TCGA-FD-A62O TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FJ-A3ZF 
       49.68         2.66         4.83         7.13         3.48         4.08 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2ES 
        3.25        61.94        30.61         5.69        26.93        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3WC TCGA-GC-A3YS 
        7.04        20.12         4.50        15.91        17.75         1.12 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42P 
        7.73         2.10         3.12        20.98         2.20         6.41 
TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QF 
        7.66        11.31         4.41         6.41         6.15         7.63 
TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A4AB TCGA-K4-A54R TCGA-K4-A6MB 
        1.51         6.74         8.75         2.50        10.52         4.27 
TCGA-LC-A66R TCGA-LT-A5Z6 TCGA-PQ-A6FI TCGA-PQ-A6FN 
        6.35         3.45        12.23        16.67 

  12P GAIN MUTATED 12P GAIN WILD-TYPE 
              0.49               0.07 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
             67.36             140.81 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
             7.495              8.830 
[1] "0.5 - 67.4 (7.5)"  "0.1 - 140.8 (8.8)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D23V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  12P GAIN MUTATED         1       22        22       15
  12P GAIN WILD-TYPE       1       43        44       43
D23V3, multiclass
           clus
vv          12P GAIN MUTATED 12P GAIN WILD-TYPE
  STAGE I                  1                  1
  STAGE II                22                 43
  STAGE III               22                 44
  STAGE IV                15                 43
                    vv
clus                 T0+T1+T2 T3 T4
  12P GAIN MUTATED         22 27  8
  12P GAIN WILD-TYPE       37 63 20
D23V4, multiclass
          clus
vv         12P GAIN MUTATED 12P GAIN WILD-TYPE
  T0+T1+T2               22                 37
  T3                     27                 63
  T4                      8                 20
                    vv
clus                 N0 N1 N2 N3
  12P GAIN MUTATED   38  5  9  3
  12P GAIN WILD-TYPE 82 13 24  4
D23V5, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  N0               38                 82
  N1                5                 13
  N2                9                 24
  N3                3                  4
                    vv
clus                 M0 M1 MX
  12P GAIN MUTATED   33  0 27
  12P GAIN WILD-TYPE 70  5 59
D23V6, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  M0               33                 70
  M1                0                  5
  MX               27                 59
D23V7, binary
                    cls
clus                   0   1
  12P GAIN MUTATED    17  44
  12P GAIN WILD-TYPE  31 103
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     17   44
  12P GAIN WILD-TYPE   31  103
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  FEMALE               17                 31
  MALE                 44                103
D23V8, continuous
D23V9, continuous
D23V10, continuous
D23V11, continuous

Clustering(24) Variable = 12Q GAIN MUTATION ANALYSIS
D24V1, survival
                    sevent
clus2                  0   1
  12Q GAIN MUTATED    25  16
  12Q GAIN WILD-TYPE 107  40
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                41                147 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                16                 40 
$`12Q GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A3JM TCGA-BT-A20J TCGA-BT-A20P TCGA-BT-A20R TCGA-BT-A20X 
       40.08         6.74        19.04        17.88         5.06         8.25 
TCGA-BT-A2LB TCGA-BT-A3PK TCGA-BT-A42E TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A5W6 
        5.59         2.07         9.99         4.90         7.20         1.84 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AC TCGA-DK-A3IS TCGA-DK-A3WX 
        2.53         2.14        31.40       130.88        50.27        10.55 
TCGA-DK-A3X1 TCGA-DK-A6AV TCGA-DK-A6B1 TCGA-E7-A5KE TCGA-FD-A3NA TCGA-FD-A43Y 
       48.00        64.18        67.36         0.56        45.93        12.13 
TCGA-FD-A5BV TCGA-FD-A5BZ TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-G2-A2EF 
        5.36        27.45         6.28         6.38        15.19        61.94 
TCGA-G2-A2EO TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GV-A3QH TCGA-GV-A3QI 
       35.24         0.85         2.89         2.24         7.79         4.14 
TCGA-GV-A3QK TCGA-GV-A40E TCGA-K4-A3WU TCGA-K4-A6FZ TCGA-MV-A51V 
        6.67         6.41         3.45         1.81        13.48 

$`12Q GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A5ZZ TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20N 
        7.33         2.66        12.39         6.58        11.93        32.84 
TCGA-BT-A20O TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W 
       12.16        19.50        14.89        14.96         5.06         8.35 
TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-C4-A0EZ TCGA-C4-A0F0 
       17.16         3.65         4.67        12.82         8.98         1.94 
TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T 
       23.01         0.46         0.43         0.69         0.13         0.07 
TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A3KJ 
        0.10         0.07         0.10         0.10        12.92         5.46 
TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD 
        5.19        16.31        18.41        19.00         8.91       112.44 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
       16.14        17.62        15.62         1.81        10.59         7.79 
TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN 
      123.85        87.32         2.20         3.98         7.82         8.22 
TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WY 
       10.49        21.30        20.02         9.67         8.28       140.81 
TCGA-DK-A3X2 TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-DK-A6B6 
       17.98        48.53        64.64        15.68        32.28        21.24 
TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4IJ 
       43.59        15.35        26.17        24.66         0.10         0.49 
TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV 
        0.53         0.59         0.66         1.38         0.82         1.22 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
       12.89        15.68         8.94         6.87         4.01        12.43 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN 
       11.93        15.88        24.30        22.45        16.47        12.82 
TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N 
        5.52        13.18        46.78        19.79         1.97        22.98 
TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A5BR TCGA-FD-A5BS 
       14.93        14.96        14.93         3.62        13.38        37.15 
TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5C0 TCGA-FD-A5C1 
       11.01         6.87         5.69         6.84         6.87        49.68 
TCGA-FD-A62N TCGA-FD-A62O TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE 
        2.66         4.83         7.13         3.48         4.08         3.25 
TCGA-FT-A61P TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2ES TCGA-G2-A3IB 
        6.48        30.61         5.69        26.93        17.26         7.04 
TCGA-G2-A3IE TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC 
       20.12        15.81         4.50        15.91        14.07        17.75 
TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GD-A6C6 
        1.12         7.73         2.10         3.12        20.98         2.20 
TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX 
        6.41         7.66        11.31         4.41         6.41         6.15 
TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS 
        5.69         7.63        19.07         1.51         6.74         8.75 
TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6MB TCGA-LC-A66R 
        4.67         2.50         6.48        10.52         4.27         6.35 
TCGA-LT-A5Z6 TCGA-PQ-A6FI TCGA-PQ-A6FN 
        3.45        12.23        16.67 

  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              0.56               0.07 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
            130.88             140.81 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              7.20               8.75 
[1] "0.6 - 130.9 (7.2)" "0.1 - 140.8 (8.8)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D24V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  12Q GAIN MUTATED         1       16        18        9
  12Q GAIN WILD-TYPE       1       49        48       49
D24V3, multiclass
           clus
vv          12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  STAGE I                  1                  1
  STAGE II                16                 49
  STAGE III               18                 48
  STAGE IV                 9                 49
                    vv
clus                 T0+T1+T2 T3 T4
  12Q GAIN MUTATED         16 19  6
  12Q GAIN WILD-TYPE       43 71 22
D24V4, multiclass
          clus
vv         12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  T0+T1+T2               16                 43
  T3                     19                 71
  T4                      6                 22
                    vv
clus                 N0 N1 N2 N3
  12Q GAIN MUTATED   31  3  7  0
  12Q GAIN WILD-TYPE 89 15 26  7
D24V5, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  N0               31                 89
  N1                3                 15
  N2                7                 26
  N3                0                  7
                    vv
clus                 M0 M1 MX
  12Q GAIN MUTATED   28  0 16
  12Q GAIN WILD-TYPE 75  5 70
D24V6, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  M0               28                 75
  M1                0                  5
  MX               16                 70
D24V7, binary
                    cls
clus                   0   1
  12Q GAIN MUTATED    12  33
  12Q GAIN WILD-TYPE  36 114
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED     12   33
  12Q GAIN WILD-TYPE   36  114
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  FEMALE               12                 36
  MALE                 33                114
D24V8, continuous
D24V9, continuous
D24V10, continuous
D24V11, continuous

Clustering(25) Variable = 13Q GAIN MUTATION ANALYSIS
D25V1, survival
                    sevent
clus2                  0   1
  13Q GAIN MUTATED    31  13
  13Q GAIN WILD-TYPE 101  43
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                44                144 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                13                 43 
$`13Q GAIN MUTATED`
TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20J TCGA-BT-A20Q TCGA-BT-A20U TCGA-BT-A2LD 
        6.74         6.58        19.04        19.50        14.96         3.65 
TCGA-BT-A3PJ TCGA-C4-A0EZ TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A0YR TCGA-CU-A3QU 
       12.82         8.98         0.43        12.92         7.20         5.19 
TCGA-CU-A3YL TCGA-DK-A2HX TCGA-DK-A3IL TCGA-DK-A3IS TCGA-DK-A3IU TCGA-DK-A3X1 
       16.31         1.81         3.98        50.27        20.02        48.00 
TCGA-DK-A6B1 TCGA-E5-A2PC TCGA-E7-A541 TCGA-FD-A3B6 TCGA-FD-A3SM TCGA-FD-A3SQ 
       67.36        43.59         0.59         6.87        16.47        46.78 
TCGA-FD-A43X TCGA-FD-A5BT TCGA-FD-A62O TCGA-FJ-A3ZE TCGA-FT-A61P TCGA-G2-A2EF 
        3.62        11.01         4.83         3.48         6.48        61.94 
TCGA-G2-A2EK TCGA-GC-A3OO TCGA-GC-A3WC TCGA-GD-A3OP TCGA-GD-A3OS TCGA-GV-A3JX 
        5.69        15.81        17.75         2.10        20.98         6.15 
TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QK TCGA-H4-A2HQ TCGA-K4-A54R 
        5.69         7.63         7.79         6.67         6.74        10.52 
TCGA-LC-A66R TCGA-MV-A51V 
        6.35        13.48 

$`13Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A5ZZ TCGA-BT-A0YX TCGA-BT-A20N 
       40.08         7.33         2.66        12.39        11.93        32.84 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A20W 
       12.16        17.88         5.06        14.89         5.06         8.35 
TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LB TCGA-BT-A3PH TCGA-BT-A3PK TCGA-BT-A42E 
        8.25        17.16         5.59         4.67         2.07         9.99 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T 
        1.94        23.01         0.46         0.69         0.13         0.07 
TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YO TCGA-CU-A3KJ 
        0.10         0.07         0.10         0.10         4.90         5.46 
TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
        1.84         2.53         2.14        31.40        18.41        19.00 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        8.91       130.88       112.44        16.14        17.62        15.62 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IM 
       10.59         7.79       123.85        87.32         2.20         7.82 
TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX 
        8.22        10.49        21.30         9.67         8.28        10.55 
TCGA-DK-A3WY TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B2 
      140.81        17.98        64.18        48.53        64.64        15.68 
TCGA-DK-A6B5 TCGA-DK-A6B6 TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 
       32.28        21.24        15.35        26.17        24.66         0.10 
TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 
        0.49         0.53         0.56         0.66         1.38         0.82 
TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 
        1.22        12.89        15.68         8.94         4.01        12.43 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SN 
       11.93        15.88        45.93        24.30        22.45        12.82 
TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43P 
        5.52        13.18        19.79         1.97        22.98        14.93 
TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BU 
       14.96        14.93        12.13        13.38        37.15         6.87 
TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A5C1 
        5.36         5.69         6.84        27.45         6.87        49.68 
TCGA-FD-A62N TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZF 
        2.66         6.28         6.38        15.19         7.13         4.08 
TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB 
        3.25        30.61        26.93        35.24        17.26         7.04 
TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3RB TCGA-GC-A3RC 
       20.12         0.85         2.89         2.24         4.50        15.91 
TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OQ TCGA-GD-A6C6 TCGA-GU-A42P 
       14.07         1.12         7.73         3.12         2.20         6.41 
TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3QI TCGA-GV-A40E 
        7.66        11.31         4.41         6.41         4.14         6.41 
TCGA-GV-A40G TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A4AB 
       19.07         1.51         8.75         3.45         4.67         2.50 
TCGA-K4-A4AC TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LT-A5Z6 TCGA-PQ-A6FI TCGA-PQ-A6FN 
        6.48         1.81         4.27         3.45        12.23        16.67 

  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
              0.43               0.07 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             67.36             140.81 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             7.710              8.315 
[1] "0.4 - 67.4 (7.7)"  "0.1 - 140.8 (8.3)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED"   "13Q GAIN MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED"   "13Q GAIN MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED"   "13Q GAIN MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D25V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  13Q GAIN MUTATED         0       15        12       19
  13Q GAIN WILD-TYPE       2       50        54       39
D25V3, multiclass
           clus
vv          13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  STAGE I                  0                  2
  STAGE II                15                 50
  STAGE III               12                 54
  STAGE IV                19                 39
                    vv
clus                 T0+T1+T2 T3 T4
  13Q GAIN MUTATED         14 21  6
  13Q GAIN WILD-TYPE       45 69 22
D25V4, multiclass
          clus
vv         13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  T0+T1+T2               14                 45
  T3                     21                 69
  T4                      6                 22
                    vv
clus                 N0 N1 N2 N3
  13Q GAIN MUTATED   24  4 12  4
  13Q GAIN WILD-TYPE 96 14 21  3
D25V5, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  N0               24                 96
  N1                4                 14
  N2               12                 21
  N3                4                  3
                    vv
clus                 M0 M1 MX
  13Q GAIN MUTATED   23  4 20
  13Q GAIN WILD-TYPE 80  1 66
D25V6, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  M0               23                 80
  M1                4                  1
  MX               20                 66
D25V7, binary
                    cls
clus                   0   1
  13Q GAIN MUTATED    13  34
  13Q GAIN WILD-TYPE  35 113
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED     13   34
  13Q GAIN WILD-TYPE   35  113
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  FEMALE               13                 35
  MALE                 34                113
D25V8, continuous
D25V9, continuous
D25V10, continuous
D25V11, continuous

Clustering(26) Variable = 14Q GAIN MUTATION ANALYSIS
D26V1, survival
                    sevent
clus2                  0   1
  14Q GAIN MUTATED    22  14
  14Q GAIN WILD-TYPE 110  42
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                36                152 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                14                 42 
$`14Q GAIN MUTATED`
TCGA-BL-A13J TCGA-BL-A5ZZ TCGA-BT-A0S7 TCGA-BT-A20N TCGA-C4-A0EZ TCGA-C4-A0F0 
        2.66        12.39         6.58        32.84         8.98         1.94 
TCGA-C4-A0F6 TCGA-CU-A0YN TCGA-DK-A3IK TCGA-DK-A3IN TCGA-DK-A3IT TCGA-DK-A3WX 
       23.01        12.92         2.20         8.22        21.30        10.55 
TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-FD-A3B3 TCGA-FD-A3B7 TCGA-FD-A3N5 TCGA-FD-A5BT 
       21.24        43.59        12.89         4.01        11.93        11.01 
TCGA-FD-A5BZ TCGA-FD-A62O TCGA-FD-A62S TCGA-FJ-A3ZE TCGA-G2-A2EL TCGA-G2-A2EO 
       27.45         4.83         6.38         3.48        26.93        35.24 
TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3YS TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42P 
        2.89         2.24         1.12        20.98         2.20         6.41 
TCGA-GV-A3QH TCGA-K4-A3WV TCGA-K4-A4AC TCGA-K4-A6FZ TCGA-LT-A5Z6 TCGA-PQ-A6FN 
        7.79         4.67         6.48         1.81         3.45        16.67 

$`14Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O 
       40.08         7.33         6.74        11.93        19.04        12.16 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V 
       17.88        19.50         5.06        14.89        14.96         5.06 
TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH 
        8.35         8.25        17.16         5.59         3.65         4.67 
TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-BT-A42E TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C 
       12.82         2.07         9.99         0.46         0.43         0.69 
TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y 
        0.13         0.07         0.10         0.07         0.10         0.10 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 
        4.90         7.20         5.46         5.19        16.31         1.84 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB 
        2.53         2.14        31.40        18.41        19.00         8.91 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
      130.88       112.44        16.14        17.62        15.62         1.81 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IL TCGA-DK-A3IM 
       10.59         7.79       123.85        87.32         3.98         7.82 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WY 
       10.49        50.27        20.02         9.67         8.28       140.81 
TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 
       48.00        17.98        64.18        48.53        64.64        67.36 
TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 
       15.68        32.28        15.35        26.17        24.66         0.10 
TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 
        0.49         0.53         0.59         0.56         0.66         1.38 
TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B8 
        0.82         1.22        15.68         8.94         6.87        12.43 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN 
       15.88        45.93        24.30        22.45        16.47        12.82 
TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N 
        5.52        13.18        46.78        19.79         1.97        22.98 
TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BR 
       14.93        14.96        14.93         3.62        12.13        13.38 
TCGA-FD-A5BS TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5C0 
       37.15         6.87         5.36         5.69         6.84         6.87 
TCGA-FD-A5C1 TCGA-FD-A62N TCGA-FD-A62P TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZF 
       49.68         2.66         6.28        15.19         7.13         4.08 
TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2ES 
        3.25         6.48        61.94        30.61         5.69        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC 
        7.04        20.12         0.85        15.81         4.50        15.91 
TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GU-A42Q 
       14.07        17.75         7.73         2.10         3.12         7.66 
TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF 
       11.31         4.41         6.41         6.15         5.69         7.63 
TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ 
        4.14         6.67         6.41        19.07         1.51         6.74 
TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A4AB TCGA-K4-A54R TCGA-K4-A6MB TCGA-LC-A66R 
        8.75         3.45         2.50        10.52         4.27         6.35 
TCGA-MV-A51V TCGA-PQ-A6FI 
       13.48        12.23 

  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
              1.12               0.07 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
             43.59             140.81 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
             8.005              8.315 
[1] "1.1 - 43.6 (8.0)"  "0.1 - 140.8 (8.3)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
[1] "hr=" "1.5"
D26V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  14Q GAIN MUTATED         0       10        18        8
  14Q GAIN WILD-TYPE       2       55        48       50
D26V3, multiclass
           clus
vv          14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  STAGE I                  0                  2
  STAGE II                10                 55
  STAGE III               18                 48
  STAGE IV                 8                 50
                    vv
clus                 T0+T1+T2 T3 T4
  14Q GAIN MUTATED          6 20  4
  14Q GAIN WILD-TYPE       53 70 24
D26V4, multiclass
          clus
vv         14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  T0+T1+T2                6                 53
  T3                     20                 70
  T4                      4                 24
                    vv
clus                 N0 N1 N2 N3
  14Q GAIN MUTATED   23  5  3  1
  14Q GAIN WILD-TYPE 97 13 30  6
D26V5, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  N0               23                 97
  N1                5                 13
  N2                3                 30
  N3                1                  6
                    vv
clus                 M0 M1 MX
  14Q GAIN MUTATED   13  2 21
  14Q GAIN WILD-TYPE 90  3 65
D26V6, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  M0               13                 90
  M1                2                  3
  MX               21                 65
D26V7, binary
                    cls
clus                   0   1
  14Q GAIN MUTATED    12  24
  14Q GAIN WILD-TYPE  36 123
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED     12   24
  14Q GAIN WILD-TYPE   36  123
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  FEMALE               12                 36
  MALE                 24                123
D26V8, continuous
D26V9, continuous
D26V10, continuous
D26V11, continuous

Clustering(27) Variable = 15Q GAIN MUTATION ANALYSIS
D27V1, survival
                    sevent
clus2                  0   1
  15Q GAIN MUTATED    11   6
  15Q GAIN WILD-TYPE 121  50
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                17                171 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 6                 50 
$`15Q GAIN MUTATED`
TCGA-BT-A20Q TCGA-BT-A20V TCGA-C4-A0F6 TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A5 
       19.50         5.06        23.01        16.31         1.84         2.14 
TCGA-DK-A2HX TCGA-DK-A3IS TCGA-DK-A3WX TCGA-DK-A6B1 TCGA-E5-A4TZ TCGA-FD-A43U 
        1.81        50.27        10.55        67.36        15.35        14.93 
TCGA-FD-A43X TCGA-FJ-A3ZE TCGA-G2-A2EO TCGA-GC-A3BM TCGA-GC-A3I6 
        3.62         3.48        35.24         2.89         2.24 

$`15Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20R 
       11.93        19.04        32.84        12.16        17.88         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LB 
       14.89        14.96         8.35         8.25        17.16         5.59 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-BT-A42E TCGA-C4-A0EZ 
        3.65         4.67        12.82         2.07         9.99         8.98 
TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T 
        1.94         0.46         0.43         0.69         0.13         0.07 
TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A0YO 
        0.10         0.07         0.10         0.10        12.92         4.90 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1A7 
        7.20         5.46         5.19         2.53        31.40        18.41 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
       19.00         8.91       130.88       112.44        16.14        17.62 
TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK 
       15.62        10.59         7.79       123.85        87.32         2.20 
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IU 
        3.98         7.82         8.22        10.49        21.30        20.02 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AV 
        9.67         8.28       140.81        48.00        17.98        64.18 
TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-DK-A6B6 TCGA-E5-A2PC 
       48.53        64.64        15.68        32.28        21.24        43.59 
TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A541 
       26.17        24.66         0.10         0.49         0.53         0.59 
TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B3 
        0.56         0.66         1.38         0.82         1.22        12.89 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
       15.68         8.94         6.87         4.01        12.43        11.93 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN 
       15.88        45.93        24.30        22.45        16.47        12.82 
TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N 
        5.52        13.18        46.78        19.79         1.97        22.98 
TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT 
       14.93        14.96        12.13        13.38        37.15        11.01 
TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C0 
        6.87         5.36         5.69         6.84        27.45         6.87 
TCGA-FD-A5C1 TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 
       49.68         2.66         4.83         6.28         6.38        15.19 
TCGA-FJ-A3Z9 TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ 
        7.13         4.08         3.25         6.48        61.94        30.61 
TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY 
        5.69        26.93        17.26         7.04        20.12         0.85 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS 
       15.81         4.50        15.91        14.07        17.75         1.12 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42P 
        7.73         2.10         3.12        20.98         2.20         6.41 
TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ 
        7.66        11.31         4.41         6.41         6.15         5.69 
TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G 
        7.63         7.79         4.14         6.67         6.41        19.07 
TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A4AB 
        1.51         6.74         8.75         3.45         4.67         2.50 
TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LC-A66R TCGA-LT-A5Z6 
        6.48        10.52         1.81         4.27         6.35         3.45 
TCGA-MV-A51V TCGA-PQ-A6FI TCGA-PQ-A6FN 
       13.48        12.23        16.67 

  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
              1.81               0.07 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             67.36             140.81 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             10.55               8.25 
[1] "1.8 - 67.4 (10.6)" "0.1 - 140.8 (8.2)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D27V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  15Q GAIN MUTATED         0        6         6        7
  15Q GAIN WILD-TYPE       2       59        60       51
D27V3, multiclass
           clus
vv          15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  STAGE I                  0                  2
  STAGE II                 6                 59
  STAGE III                6                 60
  STAGE IV                 7                 51
                    vv
clus                 T0+T1+T2 T3 T4
  15Q GAIN MUTATED          6  7  5
  15Q GAIN WILD-TYPE       53 83 23
D27V4, multiclass
          clus
vv         15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  T0+T1+T2                6                 53
  T3                      7                 83
  T4                      5                 23
                    vv
clus                  N0  N1  N2  N3
  15Q GAIN MUTATED    12   0   5   2
  15Q GAIN WILD-TYPE 108  18  28   5
D27V5, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  N0               12                108
  N1                0                 18
  N2                5                 28
  N3                2                  5
                    vv
clus                 M0 M1 MX
  15Q GAIN MUTATED   14  1  4
  15Q GAIN WILD-TYPE 89  4 82
D27V6, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  M0               14                 89
  M1                1                  4
  MX                4                 82
D27V7, binary
                    cls
clus                   0   1
  15Q GAIN MUTATED     4  15
  15Q GAIN WILD-TYPE  44 132
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      4   15
  15Q GAIN WILD-TYPE   44  132
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  FEMALE                4                 44
  MALE                 15                132
D27V8, continuous
D27V9, continuous
D27V10, continuous
D27V11, continuous

Clustering(28) Variable = 16P GAIN MUTATION ANALYSIS
D28V1, survival
                    sevent
clus2                  0   1
  16P GAIN MUTATED    17  12
  16P GAIN WILD-TYPE 115  44
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                29                159 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                12                 44 
$`16P GAIN MUTATED`
TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A2LA TCGA-C4-A0EZ 
        2.66         6.58         5.06         8.25        17.16         8.98 
TCGA-CF-A47X TCGA-DK-A2I2 TCGA-DK-A3IL TCGA-DK-A3IN TCGA-DK-A3IS TCGA-DK-A3IV 
        0.10         7.79         3.98         8.22        50.27         9.67 
TCGA-DK-A3X1 TCGA-DK-A6B2 TCGA-E5-A2PC TCGA-E7-A4IJ TCGA-FD-A3SJ TCGA-FD-A5BY 
       48.00        15.68        43.59         0.49        24.30         6.84 
TCGA-FJ-A3ZE TCGA-FT-A3EE TCGA-G2-A2EO TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GV-A3JV 
        3.48         3.25        35.24         2.89         2.24         4.41 
TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A4AB TCGA-LC-A66R 
        6.74         8.75         3.45         2.50         6.35 

$`16P GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0YX TCGA-BT-A20J 
       40.08         7.33         6.74        12.39        11.93        19.04 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       32.84        12.16        17.88        19.50         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PJ 
       14.96         8.35         5.59         3.65         4.67        12.82 
TCGA-BT-A3PK TCGA-BT-A42E TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
        2.07         9.99         1.94        23.01         0.46         0.43 
TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47Y 
        0.69         0.13         0.07         0.10         0.07         0.10 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL 
       12.92         4.90         7.20         5.46         5.19        16.31 
TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
        1.84         2.53         2.14        31.40        18.41        19.00 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        8.91       130.88       112.44        16.14        17.62        15.62 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IM 
        1.81        10.59       123.85        87.32         2.20         7.82 
TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
       10.49        21.30        20.02         8.28        10.55       140.81 
TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B5 
       17.98        64.18        48.53        64.64        67.36        32.28 
TCGA-DK-A6B6 TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4XJ 
       21.24        15.35        26.17        24.66         0.10         0.53 
TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV 
        0.59         0.56         0.66         1.38         0.82         1.22 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
       12.89        15.68         8.94         6.87         4.01        12.43 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN 
       11.93        15.88        45.93        22.45        16.47        12.82 
TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N 
        5.52        13.18        46.78        19.79         1.97        22.98 
TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BR 
       14.93        14.96        14.93         3.62        12.13        13.38 
TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BZ 
       37.15        11.01         6.87         5.36         5.69        27.45 
TCGA-FD-A5C0 TCGA-FD-A5C1 TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S 
        6.87        49.68         2.66         4.83         6.28         6.38 
TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZF TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ 
       15.19         7.13         4.08         6.48        61.94        30.61 
TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY 
        5.69        26.93        17.26         7.04        20.12         0.85 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS 
       15.81         4.50        15.91        14.07        17.75         1.12 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42P 
        7.73         2.10         3.12        20.98         2.20         6.41 
TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF 
        7.66        11.31         6.41         6.15         5.69         7.63 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO 
        7.79         4.14         6.67         6.41        19.07         1.51 
TCGA-K4-A3WV TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LT-A5Z6 
        4.67         6.48        10.52         1.81         4.27         3.45 
TCGA-MV-A51V TCGA-PQ-A6FI TCGA-PQ-A6FN 
       13.48        12.23        16.67 

  16P GAIN MUTATED 16P GAIN WILD-TYPE 
              0.10               0.07 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             50.27             140.81 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
              6.74               9.99 
[1] "0.1 - 50.3 (6.7)"   "0.1 - 140.8 (10.0)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "16P GAIN MUTATED"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "16P GAIN MUTATED"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "16P GAIN MUTATED"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
[1] "hr=" "1.8"
D28V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  16P GAIN MUTATED         0        5        11       13
  16P GAIN WILD-TYPE       2       60        55       45
D28V3, multiclass
           clus
vv          16P GAIN MUTATED 16P GAIN WILD-TYPE
  STAGE I                  0                  2
  STAGE II                 5                 60
  STAGE III               11                 55
  STAGE IV                13                 45
                    vv
clus                 T0+T1+T2 T3 T4
  16P GAIN MUTATED          6 11  9
  16P GAIN WILD-TYPE       53 79 19
D28V4, multiclass
          clus
vv         16P GAIN MUTATED 16P GAIN WILD-TYPE
  T0+T1+T2                6                 53
  T3                     11                 79
  T4                      9                 19
                    vv
clus                  N0  N1  N2  N3
  16P GAIN MUTATED    14   4   6   2
  16P GAIN WILD-TYPE 106  14  27   5
D28V5, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  N0               14                106
  N1                4                 14
  N2                6                 27
  N3                2                  5
                    vv
clus                 M0 M1 MX
  16P GAIN MUTATED   16  3 10
  16P GAIN WILD-TYPE 87  2 76
D28V6, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  M0               16                 87
  M1                3                  2
  MX               10                 76
D28V7, binary
                    cls
clus                   0   1
  16P GAIN MUTATED     9  20
  16P GAIN WILD-TYPE  39 127
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      9   20
  16P GAIN WILD-TYPE   39  127
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  FEMALE                9                 39
  MALE                 20                127
D28V8, continuous
D28V9, continuous
D28V10, continuous
D28V11, continuous

Clustering(29) Variable = 16Q GAIN MUTATION ANALYSIS
D29V1, survival
                    sevent
clus2                  0   1
  16Q GAIN MUTATED    26  11
  16Q GAIN WILD-TYPE 106  45
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                37                151 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                11                 45 
$`16Q GAIN MUTATED`
TCGA-BL-A13J TCGA-BT-A0S7 TCGA-BT-A20R TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A2LA 
        2.66         6.58         5.06         5.06         8.25        17.16 
TCGA-BT-A3PJ TCGA-C4-A0EZ TCGA-CF-A47X TCGA-CU-A3KJ TCGA-DK-A2I2 TCGA-DK-A3IL 
       12.82         8.98         0.10         5.46         7.79         3.98 
TCGA-DK-A3IN TCGA-DK-A3IS TCGA-DK-A3X1 TCGA-DK-A6B2 TCGA-E5-A2PC TCGA-FD-A3B3 
        8.22        50.27        48.00        15.68        43.59        12.89 
TCGA-FD-A43P TCGA-FD-A5BY TCGA-FD-A62P TCGA-FJ-A3ZE TCGA-FT-A3EE TCGA-G2-A2EO 
       14.93         6.84         6.28         3.48         3.25        35.24 
TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OS 
        0.85         2.89         2.24         1.12         7.73        20.98 
TCGA-GV-A3JW TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A4AB TCGA-K4-A6MB 
        6.41         6.74         8.75         3.45         2.50         4.27 
TCGA-LC-A66R 
        6.35 

$`16Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0YX TCGA-BT-A20J 
       40.08         7.33         6.74        12.39        11.93        19.04 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20U 
       32.84        12.16        17.88        19.50        14.89        14.96 
TCGA-BT-A20W TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PK TCGA-BT-A42E 
        8.35         5.59         3.65         4.67         2.07         9.99 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A47S 
        1.94        23.01         0.46         0.43         0.69         0.13 
TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A0YO 
        0.07         0.10         0.07         0.10        12.92         4.90 
TCGA-CU-A0YR TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A5 
        7.20         5.19        16.31         1.84         2.53         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD 
       31.40        18.41        19.00         8.91       130.88       112.44 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I4 
       16.14        17.62        15.62         1.81        10.59       123.85 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IU 
       87.32         2.20         7.82        10.49        21.30        20.02 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X2 TCGA-DK-A6AV 
        9.67         8.28        10.55       140.81        17.98        64.18 
TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B5 TCGA-DK-A6B6 TCGA-E5-A4TZ 
       48.53        64.64        67.36        32.28        21.24        15.35 
TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A541 
       26.17        24.66         0.10         0.49         0.53         0.59 
TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B4 
        0.56         0.66         1.38         0.82         1.22        15.68 
TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
        8.94         6.87         4.01        12.43        11.93        15.88 
TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO 
       45.93        24.30        22.45        16.47        12.82         5.52 
TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43S 
       13.18        46.78        19.79         1.97        22.98        14.96 
TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT 
       14.93         3.62        12.13        13.38        37.15        11.01 
TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A5C1 
        6.87         5.36         5.69        27.45         6.87        49.68 
TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZF 
        2.66         4.83         6.38        15.19         7.13         4.08 
TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2ES 
        6.48        61.94        30.61         5.69        26.93        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD 
        7.04        20.12        15.81         4.50        15.91        14.07 
TCGA-GC-A3WC TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GU-A42Q 
       17.75         2.10         3.12         2.20         6.41         7.66 
TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH 
       11.31         4.41         6.15         5.69         7.63         7.79 
TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-K4-A3WV 
        4.14         6.67         6.41        19.07         1.51         4.67 
TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6FZ TCGA-LT-A5Z6 TCGA-MV-A51V TCGA-PQ-A6FI 
        6.48        10.52         1.81         3.45        13.48        12.23 
TCGA-PQ-A6FN 
       16.67 

  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
              0.10               0.07 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
             50.27             140.81 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
              6.58              10.49 
[1] "0.1 - 50.3 (6.6)"   "0.1 - 140.8 (10.5)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D29V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  16Q GAIN MUTATED         0        8        14       15
  16Q GAIN WILD-TYPE       2       57        52       43
D29V3, multiclass
           clus
vv          16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  STAGE I                  0                  2
  STAGE II                 8                 57
  STAGE III               14                 52
  STAGE IV                15                 43
                    vv
clus                 T0+T1+T2 T3 T4
  16Q GAIN MUTATED          7 17  9
  16Q GAIN WILD-TYPE       52 73 19
D29V4, multiclass
          clus
vv         16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  T0+T1+T2                7                 52
  T3                     17                 73
  T4                      9                 19
                    vv
clus                  N0  N1  N2  N3
  16Q GAIN MUTATED    18   6   6   3
  16Q GAIN WILD-TYPE 102  12  27   4
D29V5, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  N0               18                102
  N1                6                 12
  N2                6                 27
  N3                3                  4
                    vv
clus                 M0 M1 MX
  16Q GAIN MUTATED   17  3 16
  16Q GAIN WILD-TYPE 86  2 70
D29V6, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  M0               17                 86
  M1                3                  2
  MX               16                 70
D29V7, binary
                    cls
clus                   0   1
  16Q GAIN MUTATED    13  24
  16Q GAIN WILD-TYPE  35 123
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED     13   24
  16Q GAIN WILD-TYPE   35  123
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  FEMALE               13                 35
  MALE                 24                123
D29V8, continuous
D29V9, continuous
D29V10, continuous
D29V11, continuous

Clustering(30) Variable = 17P GAIN MUTATION ANALYSIS
D30V1, survival
                    sevent
clus2                  0   1
  17P GAIN MUTATED    13  14
  17P GAIN WILD-TYPE 119  42
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                27                161 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                14                 42 
$`17P GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20R TCGA-BT-A20U 
       40.08         2.66         6.74         6.58         5.06        14.96 
TCGA-BT-A20W TCGA-BT-A2LD TCGA-BT-A3PJ TCGA-C4-A0EZ TCGA-CU-A0YR TCGA-DK-A3IM 
        8.35         3.65        12.82         8.98         7.20         7.82 
TCGA-DK-A6B1 TCGA-DK-A6B6 TCGA-FD-A3B7 TCGA-FD-A3SP TCGA-FD-A5BT TCGA-FJ-A3Z7 
       67.36        21.24         4.01        13.18        11.01        15.19 
TCGA-FT-A3EE TCGA-GV-A3JV TCGA-GV-A3QH TCGA-GV-A40E TCGA-K4-A3WU TCGA-K4-A3WV 
        3.25         4.41         7.79         6.41         3.45         4.67 
TCGA-K4-A6FZ TCGA-LC-A66R TCGA-MV-A51V 
        1.81         6.35        13.48 

$`17P GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A5ZZ TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O 
        7.33        12.39        11.93        19.04        32.84        12.16 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A2LA 
       17.88        19.50        14.89         5.06         8.25        17.16 
TCGA-BT-A2LB TCGA-BT-A3PH TCGA-BT-A3PK TCGA-BT-A42E TCGA-C4-A0F0 TCGA-C4-A0F6 
        5.59         4.67         2.07         9.99         1.94        23.01 
TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V 
        0.46         0.43         0.69         0.13         0.07         0.10 
TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A3KJ 
        0.07         0.10         0.10        12.92         4.90         5.46 
TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 
        5.19        16.31         1.84         2.53         2.14        31.40 
TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE 
       18.41        19.00         8.91       130.88       112.44        16.14 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 
       17.62        15.62         1.81        10.59         7.79       123.85 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS 
       87.32         2.20         3.98         8.22        10.49        50.27 
TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
       21.30        20.02         9.67         8.28        10.55       140.81 
TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B2 
       48.00        17.98        64.18        48.53        64.64        15.68 
TCGA-DK-A6B5 TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 
       32.28        43.59        15.35        26.17        24.66         0.10 
TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 
        0.49         0.53         0.59         0.56         0.66         1.38 
TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
        0.82         1.22        12.89        15.68         8.94         6.87 
TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL 
       12.43        11.93        15.88        45.93        24.30        22.45 
TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS 
       16.47        12.82         5.52        46.78        19.79         1.97 
TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A43Y 
       22.98        14.93        14.96        14.93         3.62        12.13 
TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BY 
       13.38        37.15         6.87         5.36         5.69         6.84 
TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A5C1 TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62P 
       27.45         6.87        49.68         2.66         4.83         6.28 
TCGA-FD-A62S TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A61P TCGA-G2-A2EF 
        6.38         7.13         3.48         4.08         6.48        61.94 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB 
       30.61         5.69        26.93        35.24        17.26         7.04 
TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB 
       20.12         0.85         2.89         2.24        15.81         4.50 
TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP 
       15.91        14.07        17.75         1.12         7.73         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R 
        3.12        20.98         2.20         6.41         7.66        11.31 
TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QI TCGA-GV-A3QK 
        6.41         6.15         5.69         7.63         4.14         6.67 
TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A4AB TCGA-K4-A4AC 
       19.07         1.51         6.74         8.75         2.50         6.48 
TCGA-K4-A54R TCGA-K4-A6MB TCGA-LT-A5Z6 TCGA-PQ-A6FI TCGA-PQ-A6FN 
       10.52         4.27         3.45        12.23        16.67 

  17P GAIN MUTATED 17P GAIN WILD-TYPE 
              1.81               0.07 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             67.36             140.81 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
              7.20               8.91 
[1] "1.8 - 67.4 (7.2)"  "0.1 - 140.8 (8.9)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
[1] "hr=" "2.5"
D30V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  17P GAIN MUTATED         1        6        13        8
  17P GAIN WILD-TYPE       1       59        53       50
D30V3, multiclass
           clus
vv          17P GAIN MUTATED 17P GAIN WILD-TYPE
  STAGE I                  1                  1
  STAGE II                 6                 59
  STAGE III               13                 53
  STAGE IV                 8                 50
                    vv
clus                 T0+T1+T2 T3 T4
  17P GAIN MUTATED          6 14  6
  17P GAIN WILD-TYPE       53 76 22
D30V4, multiclass
          clus
vv         17P GAIN MUTATED 17P GAIN WILD-TYPE
  T0+T1+T2                6                 53
  T3                     14                 76
  T4                      6                 22
                    vv
clus                  N0  N1  N2  N3
  17P GAIN MUTATED    15   4   5   1
  17P GAIN WILD-TYPE 105  14  28   6
D30V5, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  N0               15                105
  N1                4                 14
  N2                5                 28
  N3                1                  6
                    vv
clus                 M0 M1 MX
  17P GAIN MUTATED   13  1 15
  17P GAIN WILD-TYPE 90  4 71
D30V6, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  M0               13                 90
  M1                1                  4
  MX               15                 71
D30V7, binary
                    cls
clus                   0   1
  17P GAIN MUTATED     7  22
  17P GAIN WILD-TYPE  41 125
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      7   22
  17P GAIN WILD-TYPE   41  125
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  FEMALE                7                 41
  MALE                 22                125
D30V8, continuous
D30V9, continuous
D30V10, continuous
D30V11, continuous

Clustering(31) Variable = 17Q GAIN MUTATION ANALYSIS
D31V1, survival
                    sevent
clus2                 0  1
  17Q GAIN MUTATED   34 27
  17Q GAIN WILD-TYPE 98 29
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                61                127 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                27                 29 
$`17Q GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 TCGA-BT-A20O 
       40.08         2.66         6.74        12.39         6.58        12.16 
TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X 
       19.50         5.06        14.89        14.96         8.35         8.25 
TCGA-BT-A2LD TCGA-C4-A0EZ TCGA-CF-A47X TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A6 
        3.65         8.98         0.10        16.31         1.84        31.40 
TCGA-DK-A1A7 TCGA-DK-A1AD TCGA-DK-A2I2 TCGA-DK-A3IM TCGA-DK-A3IS TCGA-DK-A3WX 
       18.41       112.44         7.79         7.82        50.27        10.55 
TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6B1 TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E7-A4IJ 
       48.00        17.98        67.36        21.24        43.59         0.49 
TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A677 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 
        0.59         0.56         1.38         8.94         6.87         4.01 
TCGA-FD-A3SJ TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A5BR TCGA-FD-A5BV TCGA-FD-A5C1 
       24.30        13.18        46.78        13.38         5.36        49.68 
TCGA-FD-A62O TCGA-FJ-A3Z7 TCGA-FT-A3EE TCGA-GC-A3BM TCGA-GU-A42P TCGA-GU-A42R 
        4.83        15.19         3.25         2.89         6.41        11.31 
TCGA-GV-A3JV TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QK TCGA-GV-A40E 
        4.41         5.69         7.63         7.79         6.67         6.41 
TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A6FZ TCGA-LC-A66R 
       19.07         6.74         3.45         4.67         1.81         6.35 
TCGA-MV-A51V 
       13.48 

$`17Q GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20P TCGA-BT-A20V 
        7.33        11.93        19.04        32.84        17.88         5.06 
TCGA-BT-A2LA TCGA-BT-A2LB TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-BT-A42E 
       17.16         5.59         4.67        12.82         2.07         9.99 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A47S 
        1.94        23.01         0.46         0.43         0.69         0.13 
TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A0YO 
        0.07         0.10         0.07         0.10        12.92         4.90 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1AA 
        7.20         5.46         5.19         2.53         2.14        19.00 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
        8.91       130.88        16.14        17.62        15.62         1.81 
TCGA-DK-A2I1 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IN 
       10.59       123.85        87.32         2.20         3.98         8.22 
TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WY 
       10.49        21.30        20.02         9.67         8.28       140.81 
TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-E5-A4TZ 
       64.18        48.53        64.64        15.68        32.28        15.35 
TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4XJ TCGA-E7-A5KF TCGA-E7-A678 
       26.17        24.66         0.10         0.53         0.66         0.82 
TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
        1.22        12.89        15.68        12.43        11.93        15.88 
TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SR 
       45.93        22.45        16.47        12.82         5.52        19.79 
TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43X 
        1.97        22.98        14.93        14.96        14.93         3.62 
TCGA-FD-A43Y TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BX TCGA-FD-A5BY 
       12.13        37.15        11.01         6.87         5.69         6.84 
TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A62N TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z9 
       27.45         6.87         2.66         6.28         6.38         7.13 
TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK 
        3.48         4.08         6.48        61.94        30.61         5.69 
TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY 
       26.93        35.24        17.26         7.04        20.12         0.85 
TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC 
        2.24        15.81         4.50        15.91        14.07        17.75 
TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GD-A6C6 
        1.12         7.73         2.10         3.12        20.98         2.20 
TCGA-GU-A42Q TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QI TCGA-H4-A2HO TCGA-K4-A3WS 
        7.66         6.41         6.15         4.14         1.51         8.75 
TCGA-K4-A4AB TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6MB TCGA-LT-A5Z6 TCGA-PQ-A6FI 
        2.50         6.48        10.52         4.27         3.45        12.23 
TCGA-PQ-A6FN 
       16.67 

  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              0.10               0.07 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
            112.44             140.81 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              7.82               8.75 
[1] "0.1 - 112.4 (7.8)" "0.1 - 140.8 (8.8)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
[1] "hr=" "1.9"
D31V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  17Q GAIN MUTATED         1       18        20       24
  17Q GAIN WILD-TYPE       1       47        46       34
D31V3, multiclass
           clus
vv          17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  STAGE I                  1                  1
  STAGE II                18                 47
  STAGE III               20                 46
  STAGE IV                24                 34
                    vv
clus                 T0+T1+T2 T3 T4
  17Q GAIN MUTATED         20 27 12
  17Q GAIN WILD-TYPE       39 63 16
D31V4, multiclass
          clus
vv         17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  T0+T1+T2               20                 39
  T3                     27                 63
  T4                     12                 16
                    vv
clus                 N0 N1 N2 N3
  17Q GAIN MUTATED   32  9 14  2
  17Q GAIN WILD-TYPE 88  9 19  5
D31V5, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  N0               32                 88
  N1                9                  9
  N2               14                 19
  N3                2                  5
                    vv
clus                 M0 M1 MX
  17Q GAIN MUTATED   32  2 30
  17Q GAIN WILD-TYPE 71  3 56
D31V6, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  M0               32                 71
  M1                2                  3
  MX               30                 56
D31V7, binary
                    cls
clus                   0   1
  17Q GAIN MUTATED    18  46
  17Q GAIN WILD-TYPE  30 101
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED     18   46
  17Q GAIN WILD-TYPE   30  101
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  FEMALE               18                 30
  MALE                 46                101
D31V8, continuous
D31V9, continuous
D31V10, continuous
D31V11, continuous

Clustering(32) Variable = 18P GAIN MUTATION ANALYSIS
D32V1, survival
                    sevent
clus2                 0  1
  18P GAIN MUTATED   37 19
  18P GAIN WILD-TYPE 95 37
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                56                132 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                19                 37 
$`18P GAIN MUTATED`
TCGA-BL-A3JM TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A2LB TCGA-BT-A42E TCGA-C4-A0EZ 
        6.74         5.06         8.35         5.59         9.99         8.98 
TCGA-C4-A0F0 TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A3KJ TCGA-DK-A2I2 TCGA-DK-A2I6 
        1.94         0.43        12.92         5.46         7.79        87.32 
TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3X1 TCGA-DK-A6B6 TCGA-E5-A4TZ TCGA-FD-A3B5 
        7.82         8.22        48.00        21.24        15.35         8.94 
TCGA-FD-A3B6 TCGA-FD-A3N5 TCGA-FD-A3NA TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43P 
        6.87        11.93        45.93        19.79         1.97        14.93 
TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BT TCGA-FD-A5BV TCGA-FD-A5BY TCGA-FD-A5BZ 
       12.13        13.38        11.01         5.36         6.84        27.45 
TCGA-FD-A5C1 TCGA-FJ-A3Z7 TCGA-FJ-A3ZF TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EL 
       49.68        15.19         4.08         6.48        61.94        26.93 
TCGA-G2-A2EO TCGA-G2-A3VY TCGA-GC-A3RC TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A6C6 
       35.24         0.85        15.91         7.73         2.10         2.20 
TCGA-GU-A42P TCGA-GU-A42Q TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI 
        6.41         7.66         6.15         5.69         7.79         4.14 
TCGA-GV-A3QK TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WV TCGA-K4-A6FZ TCGA-LC-A66R 
        6.67        19.07         6.74         4.67         1.81         6.35 
TCGA-LT-A5Z6 TCGA-MV-A51V 
        3.45        13.48 

$`18P GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A5ZZ TCGA-BT-A0S7 TCGA-BT-A0YX 
       40.08         7.33         2.66        12.39         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.04        32.84        12.16        17.88        19.50         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH 
       14.89        14.96         8.25        17.16         3.65         4.67 
TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CF-A47S 
       12.82         2.07        23.01         0.46         0.69         0.13 
TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YO 
        0.07         0.10         0.07         0.10         0.10         4.90 
TCGA-CU-A0YR TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A5 
        7.20         5.19        16.31         1.84         2.53         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD 
       31.40        18.41        19.00         8.91       130.88       112.44 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I4 
       16.14        17.62        15.62         1.81        10.59       123.85 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU 
        2.20         3.98        10.49        50.27        21.30        20.02 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X2 TCGA-DK-A6AV 
        9.67         8.28        10.55       140.81        17.98        64.18 
TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-E5-A2PC 
       48.53        64.64        67.36        15.68        32.28        43.59 
TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A541 
       26.17        24.66         0.10         0.49         0.53         0.59 
TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B3 
        0.56         0.66         1.38         0.82         1.22        12.89 
TCGA-FD-A3B4 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3SJ TCGA-FD-A3SL 
       15.68         4.01        12.43        15.88        24.30        22.45 
TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A43N 
       16.47        12.82         5.52        13.18        46.78        22.98 
TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A5BS TCGA-FD-A5BU TCGA-FD-A5BX 
       14.96        14.93         3.62        37.15         6.87         5.69 
TCGA-FD-A5C0 TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z9 
        6.87         2.66         4.83         6.28         6.38         7.13 
TCGA-FJ-A3ZE TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2ES TCGA-G2-A3IB 
        3.48         3.25        30.61         5.69        17.26         7.04 
TCGA-G2-A3IE TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RD 
       20.12         2.89         2.24        15.81         4.50        14.07 
TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42R TCGA-GV-A3JV 
       17.75         1.12         3.12        20.98        11.31         4.41 
TCGA-GV-A3JW TCGA-GV-A3QF TCGA-GV-A40E TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU 
        6.41         7.63         6.41         1.51         8.75         3.45 
TCGA-K4-A4AB TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6MB TCGA-PQ-A6FI TCGA-PQ-A6FN 
        2.50         6.48        10.52         4.27        12.23        16.67 

  18P GAIN MUTATED 18P GAIN WILD-TYPE 
              0.43               0.07 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
             87.32             140.81 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
              7.79               9.29 
[1] "0.4 - 87.3 (7.8)"  "0.1 - 140.8 (9.3)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D32V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  18P GAIN MUTATED         0       16        21       18
  18P GAIN WILD-TYPE       2       49        45       40
D32V3, multiclass
           clus
vv          18P GAIN MUTATED 18P GAIN WILD-TYPE
  STAGE I                  0                  2
  STAGE II                16                 49
  STAGE III               21                 45
  STAGE IV                18                 40
                    vv
clus                 T0+T1+T2 T3 T4
  18P GAIN MUTATED         12 25 11
  18P GAIN WILD-TYPE       47 65 17
D32V4, multiclass
          clus
vv         18P GAIN MUTATED 18P GAIN WILD-TYPE
  T0+T1+T2               12                 47
  T3                     25                 65
  T4                     11                 17
                    vv
clus                 N0 N1 N2 N3
  18P GAIN MUTATED   34  5  9  3
  18P GAIN WILD-TYPE 86 13 24  4
D32V5, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  N0               34                 86
  N1                5                 13
  N2                9                 24
  N3                3                  4
                    vv
clus                 M0 M1 MX
  18P GAIN MUTATED   23  2 30
  18P GAIN WILD-TYPE 80  3 56
D32V6, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  M0               23                 80
  M1                2                  3
  MX               30                 56
D32V7, binary
                    cls
clus                   0   1
  18P GAIN MUTATED    16  40
  18P GAIN WILD-TYPE  32 107
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED     16   40
  18P GAIN WILD-TYPE   32  107
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  FEMALE               16                 32
  MALE                 40                107
D32V8, continuous
D32V9, continuous
D32V10, continuous
D32V11, continuous

Clustering(33) Variable = 18Q GAIN MUTATION ANALYSIS
D33V1, survival
                    sevent
clus2                  0   1
  18Q GAIN MUTATED    17  13
  18Q GAIN WILD-TYPE 115  43
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                30                158 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                13                 43 
$`18Q GAIN MUTATED`
TCGA-BL-A3JM TCGA-BT-A20V TCGA-BT-A2LB TCGA-BT-A42E TCGA-C4-A0EZ TCGA-C4-A0F0 
        6.74         5.06         5.59         9.99         8.98         1.94 
TCGA-DK-A1AE TCGA-DK-A2I2 TCGA-DK-A3IN TCGA-DK-A6B6 TCGA-E5-A4TZ TCGA-FD-A3B6 
       16.14         7.79         8.22        21.24        15.35         6.87 
TCGA-FD-A3SR TCGA-FD-A43P TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BV TCGA-FD-A5BZ 
       19.79        14.93        12.13        13.38         5.36        27.45 
TCGA-FJ-A3Z7 TCGA-FJ-A3ZF TCGA-FT-A61P TCGA-G2-A2EL TCGA-G2-A2EO TCGA-GD-A3OP 
       15.19         4.08         6.48        26.93        35.24         2.10 
TCGA-GU-A42P TCGA-GU-A42Q TCGA-GV-A3QH TCGA-GV-A3QI TCGA-K4-A6FZ TCGA-LT-A5Z6 
        6.41         7.66         7.79         4.14         1.81         3.45 

$`18Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A5ZZ TCGA-BT-A0S7 TCGA-BT-A0YX 
       40.08         7.33         2.66        12.39         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.04        32.84        12.16        17.88        19.50         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD 
       14.89        14.96         8.35         8.25        17.16         3.65 
TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
        4.67        12.82         2.07        23.01         0.46         0.43 
TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X 
        0.69         0.13         0.07         0.10         0.07         0.10 
TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU 
        0.10        12.92         4.90         7.20         5.46         5.19 
TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 
       16.31         1.84         2.53         2.14        31.40        18.41 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AF TCGA-DK-A1AG 
       19.00         8.91       130.88       112.44        17.62        15.62 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL 
        1.81        10.59       123.85        87.32         2.20         3.98 
TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV 
        7.82        10.49        50.27        21.30        20.02         9.67 
TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AV 
        8.28        10.55       140.81        48.00        17.98        64.18 
TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-E5-A2PC 
       48.53        64.64        67.36        15.68        32.28        43.59 
TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A541 
       26.17        24.66         0.10         0.49         0.53         0.59 
TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B3 
        0.56         0.66         1.38         0.82         1.22        12.89 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
       15.68         8.94         4.01        12.43        11.93        15.88 
TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO 
       45.93        24.30        22.45        16.47        12.82         5.52 
TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43S TCGA-FD-A43U 
       13.18        46.78         1.97        22.98        14.96        14.93 
TCGA-FD-A43X TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BX TCGA-FD-A5BY 
        3.62        37.15        11.01         6.87         5.69         6.84 
TCGA-FD-A5C0 TCGA-FD-A5C1 TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S 
        6.87        49.68         2.66         4.83         6.28         6.38 
TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK 
        7.13         3.48         3.25        61.94        30.61         5.69 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 
       17.26         7.04        20.12         0.85         2.89         2.24 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS 
       15.81         4.50        15.91        14.07        17.75         1.12 
TCGA-GD-A2C5 TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42R TCGA-GV-A3JV 
        7.73         3.12        20.98         2.20        11.31         4.41 
TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QK TCGA-GV-A40E 
        6.41         6.15         5.69         7.63         6.67         6.41 
TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
       19.07         1.51         6.74         8.75         3.45         4.67 
TCGA-K4-A4AB TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6MB TCGA-LC-A66R TCGA-MV-A51V 
        2.50         6.48        10.52         4.27         6.35        13.48 
TCGA-PQ-A6FI TCGA-PQ-A6FN 
       12.23        16.67 

  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
              1.81               0.07 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
             35.24             140.81 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
              7.79               8.55 
[1] "1.8 - 35.2 (7.8)"  "0.1 - 140.8 (8.6)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
[1] "hr=" "1.8"
D33V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  18Q GAIN MUTATED         0        8        12       10
  18Q GAIN WILD-TYPE       2       57        54       48
D33V3, multiclass
           clus
vv          18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  STAGE I                  0                  2
  STAGE II                 8                 57
  STAGE III               12                 54
  STAGE IV                10                 48
                    vv
clus                 T0+T1+T2 T3 T4
  18Q GAIN MUTATED          4 14  7
  18Q GAIN WILD-TYPE       55 76 21
D33V4, multiclass
          clus
vv         18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  T0+T1+T2                4                 55
  T3                     14                 76
  T4                      7                 21
                    vv
clus                  N0  N1  N2  N3
  18Q GAIN MUTATED    17   3   6   1
  18Q GAIN WILD-TYPE 103  15  27   6
D33V5, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  N0               17                103
  N1                3                 15
  N2                6                 27
  N3                1                  6
                    vv
clus                 M0 M1 MX
  18Q GAIN MUTATED   13  1 16
  18Q GAIN WILD-TYPE 90  4 70
D33V6, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  M0               13                 90
  M1                1                  4
  MX               16                 70
D33V7, binary
                    cls
clus                   0   1
  18Q GAIN MUTATED     8  22
  18Q GAIN WILD-TYPE  40 125
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      8   22
  18Q GAIN WILD-TYPE   40  125
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  FEMALE                8                 40
  MALE                 22                125
D33V8, continuous
D33V9, continuous
D33V10, continuous
D33V11, continuous

Clustering(34) Variable = 19P GAIN MUTATION ANALYSIS
D34V1, survival
                    sevent
clus2                  0   1
  19P GAIN MUTATED    27   8
  19P GAIN WILD-TYPE 105  48
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                35                153 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 8                 48 
$`19P GAIN MUTATED`
TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A20N TCGA-BT-A20X TCGA-BT-A2LA TCGA-C4-A0F0 
        2.66         6.74        32.84         8.25        17.16         1.94 
TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A47V TCGA-CF-A47X TCGA-CU-A3KJ TCGA-CU-A3YL 
        0.46         0.43         0.10         0.10         5.46        16.31 
TCGA-DK-A1A3 TCGA-DK-A1A7 TCGA-DK-A2HX TCGA-DK-A2I4 TCGA-DK-A6AV TCGA-DK-A6B1 
        2.53        18.41         1.81       123.85        64.18        67.36 
TCGA-DK-A6B2 TCGA-DK-A6B6 TCGA-E5-A4U1 TCGA-E7-A5KE TCGA-E7-A7DV TCGA-FD-A3SR 
       15.68        21.24        26.17         0.56         1.22        19.79 
TCGA-FD-A43U TCGA-FD-A43X TCGA-FJ-A3Z7 TCGA-FT-A3EE TCGA-G2-A3VY TCGA-GC-A3YS 
       14.93         3.62        15.19         3.25         0.85         1.12 
TCGA-GD-A2C5 TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3QH TCGA-GV-A40G 
        7.73         4.41         6.41         7.79        19.07 

$`19P GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A5ZZ TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J 
       40.08         7.33        12.39         6.58        11.93        19.04 
TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U 
       12.16        17.88        19.50         5.06        14.89        14.96 
TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PJ 
        5.06         8.35         5.59         3.65         4.67        12.82 
TCGA-BT-A3PK TCGA-BT-A42E TCGA-C4-A0EZ TCGA-C4-A0F6 TCGA-CF-A27C TCGA-CF-A47S 
        2.07         9.99         8.98        23.01         0.69         0.13 
TCGA-CF-A47T TCGA-CF-A47W TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR 
        0.07         0.07         0.10        12.92         4.90         7.20 
TCGA-CU-A3QU TCGA-CU-A5W6 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AA TCGA-DK-A1AB 
        5.19         1.84         2.14        31.40        19.00         8.91 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 
      130.88       112.44        16.14        17.62        15.62        10.59 
TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN 
        7.79        87.32         2.20         3.98         7.82         8.22 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW 
       10.49        50.27        21.30        20.02         9.67         8.28 
TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AW TCGA-DK-A6B0 
       10.55       140.81        48.00        17.98        48.53        64.64 
TCGA-DK-A6B5 TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4IJ 
       32.28        43.59        15.35        24.66         0.10         0.49 
TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-FD-A3B3 
        0.53         0.59         0.66         1.38         0.82        12.89 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
       15.68         8.94         6.87         4.01        12.43        11.93 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN 
       15.88        45.93        24.30        22.45        16.47        12.82 
TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43P 
        5.52        13.18        46.78         1.97        22.98        14.93 
TCGA-FD-A43S TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU 
       14.96        12.13        13.38        37.15        11.01         6.87 
TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A5C1 
        5.36         5.69         6.84        27.45         6.87        49.68 
TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z9 TCGA-FJ-A3ZE 
        2.66         4.83         6.28         6.38         7.13         3.48 
TCGA-FJ-A3ZF TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        4.08         6.48        61.94        30.61         5.69        26.93 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3BM TCGA-GC-A3I6 
       35.24        17.26         7.04        20.12         2.89         2.24 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GD-A3OP 
       15.81         4.50        15.91        14.07        17.75         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R 
        3.12        20.98         2.20         6.41         7.66        11.31 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E 
        6.15         5.69         7.63         4.14         6.67         6.41 
TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A4AB 
        1.51         6.74         8.75         3.45         4.67         2.50 
TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LC-A66R TCGA-LT-A5Z6 
        6.48        10.52         1.81         4.27         6.35         3.45 
TCGA-MV-A51V TCGA-PQ-A6FI TCGA-PQ-A6FN 
       13.48        12.23        16.67 

  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              0.10               0.07 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
            123.85             140.81 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              6.74               8.91 
[1] "0.1 - 123.8 (6.7)" "0.1 - 140.8 (8.9)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D34V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  19P GAIN MUTATED         0       14         8       13
  19P GAIN WILD-TYPE       2       51        58       45
D34V3, multiclass
           clus
vv          19P GAIN MUTATED 19P GAIN WILD-TYPE
  STAGE I                  0                  2
  STAGE II                14                 51
  STAGE III                8                 58
  STAGE IV                13                 45
                    vv
clus                 T0+T1+T2 T3 T4
  19P GAIN MUTATED         12 15  8
  19P GAIN WILD-TYPE       47 75 20
D34V4, multiclass
          clus
vv         19P GAIN MUTATED 19P GAIN WILD-TYPE
  T0+T1+T2               12                 47
  T3                     15                 75
  T4                      8                 20
                    vv
clus                  N0  N1  N2  N3
  19P GAIN MUTATED    20   3  10   1
  19P GAIN WILD-TYPE 100  15  23   6
D34V5, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  N0               20                100
  N1                3                 15
  N2               10                 23
  N3                1                  6
                    vv
clus                 M0 M1 MX
  19P GAIN MUTATED   22  0 15
  19P GAIN WILD-TYPE 81  5 71
D34V6, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  M0               22                 81
  M1                0                  5
  MX               15                 71
D34V7, binary
                    cls
clus                   0   1
  19P GAIN MUTATED     7  31
  19P GAIN WILD-TYPE  41 116
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      7   31
  19P GAIN WILD-TYPE   41  116
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  FEMALE                7                 41
  MALE                 31                116
D34V8, continuous
D34V9, continuous
D34V10, continuous
D34V11, continuous

Clustering(35) Variable = 19Q GAIN MUTATION ANALYSIS
D35V1, survival
                    sevent
clus2                 0  1
  19Q GAIN MUTATED   44 17
  19Q GAIN WILD-TYPE 88 39
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                61                127 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                17                 39 
$`19Q GAIN MUTATED`
TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20V TCGA-BT-A20X 
        2.66         6.74        19.04        32.84         5.06         8.25 
TCGA-BT-A2LA TCGA-BT-A2LB TCGA-BT-A42E TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
       17.16         5.59         9.99         1.94        23.01         0.46 
TCGA-CF-A1HS TCGA-CF-A47X TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A6 
        0.43         0.10         5.46        16.31         2.53        31.40 
TCGA-DK-A1A7 TCGA-DK-A1AB TCGA-DK-A2HX TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IL 
       18.41         8.91         1.81       123.85        87.32         3.98 
TCGA-DK-A3X1 TCGA-DK-A6AV TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-DK-A6B6 TCGA-E5-A2PC 
       48.00        64.18        67.36        15.68        21.24        43.59 
TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A7DV TCGA-FD-A3SJ 
       15.35        26.17         0.59         0.56         1.22        24.30 
TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A5BZ 
       19.79         1.97        22.98        14.93         3.62        27.45 
TCGA-FJ-A3Z7 TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EO TCGA-G2-A3VY 
       15.19         4.08         3.25        61.94        35.24         0.85 
TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GU-A42R TCGA-GV-A3JV 
       15.91        14.07         1.12         7.73        11.31         4.41 
TCGA-GV-A3JW TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-H4-A2HQ TCGA-K4-A3WS 
        6.41         5.69         7.63         7.79         6.74         8.75 
TCGA-K4-A4AB 
        2.50 

$`19Q GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A5ZZ TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20O 
       40.08         7.33        12.39         6.58        11.93        12.16 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W 
       17.88        19.50         5.06        14.89        14.96         8.35 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-C4-A0EZ TCGA-CF-A27C 
        3.65         4.67        12.82         2.07         8.98         0.69 
TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47Y TCGA-CU-A0YN 
        0.13         0.07         0.10         0.07         0.10        12.92 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3QU TCGA-CU-A5W6 TCGA-DK-A1A5 TCGA-DK-A1AA 
        4.90         7.20         5.19         1.84         2.14        19.00 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 
      130.88       112.44        16.14        17.62        15.62        10.59 
TCGA-DK-A2I2 TCGA-DK-A3IK TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS 
        7.79         2.20         7.82         8.22        10.49        50.27 
TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
       21.30        20.02         9.67         8.28        10.55       140.81 
TCGA-DK-A3X2 TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B5 TCGA-E7-A3X6 TCGA-E7-A3Y1 
       17.98        48.53        64.64        32.28        24.66         0.10 
TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-FD-A3B3 
        0.49         0.53         0.66         1.38         0.82        12.89 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
       15.68         8.94         6.87         4.01        12.43        11.93 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO 
       15.88        45.93        22.45        16.47        12.82         5.52 
TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43Y TCGA-FD-A5BR 
       13.18        46.78        14.93        14.96        12.13        13.38 
TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BY 
       37.15        11.01         6.87         5.36         5.69         6.84 
TCGA-FD-A5C0 TCGA-FD-A5C1 TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S 
        6.87        49.68         2.66         4.83         6.28         6.38 
TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FT-A61P TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        7.13         3.48         6.48        30.61         5.69        26.93 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO 
       17.26         7.04        20.12         2.89         2.24        15.81 
TCGA-GC-A3RB TCGA-GC-A3WC TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GD-A6C6 
        4.50        17.75         2.10         3.12        20.98         2.20 
TCGA-GU-A42P TCGA-GU-A42Q TCGA-GV-A3JX TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E 
        6.41         7.66         6.15         4.14         6.67         6.41 
TCGA-GV-A40G TCGA-H4-A2HO TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A4AC TCGA-K4-A54R 
       19.07         1.51         3.45         4.67         6.48        10.52 
TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LC-A66R TCGA-LT-A5Z6 TCGA-MV-A51V TCGA-PQ-A6FI 
        1.81         4.27         6.35         3.45        13.48        12.23 
TCGA-PQ-A6FN 
       16.67 

  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
              0.10               0.07 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
            123.85             140.81 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
              8.75               8.22 
[1] "0.1 - 123.8 (8.8)" "0.1 - 140.8 (8.2)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D35V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  19Q GAIN MUTATED         0       17        18       26
  19Q GAIN WILD-TYPE       2       48        48       32
D35V3, multiclass
           clus
vv          19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  STAGE I                  0                  2
  STAGE II                17                 48
  STAGE III               18                 48
  STAGE IV                26                 32
                    vv
clus                 T0+T1+T2 T3 T4
  19Q GAIN MUTATED         17 26 14
  19Q GAIN WILD-TYPE       42 64 14
D35V4, multiclass
          clus
vv         19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  T0+T1+T2               17                 42
  T3                     26                 64
  T4                     14                 14
                    vv
clus                 N0 N1 N2 N3
  19Q GAIN MUTATED   32  7 15  3
  19Q GAIN WILD-TYPE 88 11 18  4
D35V5, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  N0               32                 88
  N1                7                 11
  N2               15                 18
  N3                3                  4
                    vv
clus                 M0 M1 MX
  19Q GAIN MUTATED   35  1 27
  19Q GAIN WILD-TYPE 68  4 59
D35V6, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  M0               35                 68
  M1                1                  4
  MX               27                 59
D35V7, binary
                    cls
clus                   0   1
  19Q GAIN MUTATED    17  47
  19Q GAIN WILD-TYPE  31 100
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED     17   47
  19Q GAIN WILD-TYPE   31  100
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  FEMALE               17                 31
  MALE                 47                100
D35V8, continuous
D35V9, continuous
D35V10, continuous
D35V11, continuous

Clustering(36) Variable = 20P GAIN MUTATION ANALYSIS
D36V1, survival
                    sevent
clus2                 0  1
  20P GAIN MUTATED   62 33
  20P GAIN WILD-TYPE 70 23
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                95                 93 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                33                 23 
$`20P GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20R TCGA-BT-A20T 
       40.08         2.66         6.74         6.58         5.06        14.89 
TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD TCGA-BT-A3PK TCGA-BT-A42E 
        5.06         8.35         8.25         3.65         2.07         9.99 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A47T 
        8.98         1.94        23.01         0.46         0.43         0.07 
TCGA-CF-A47X TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A5W6 
        0.10        12.92         4.90         7.20         5.46         1.84 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A2HX TCGA-DK-A2I1 
        2.14        31.40       130.88       112.44         1.81        10.59 
TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IN TCGA-DK-A3IU 
        7.79       123.85         2.20         3.98         8.22        20.02 
TCGA-DK-A3WX TCGA-DK-A3X2 TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-DK-A6B6 TCGA-E5-A2PC 
       10.55        17.98        67.36        15.68        21.24        43.59 
TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A541 TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B6 
       15.35        26.17         0.59         1.22        12.89         6.87 
TCGA-FD-A3B7 TCGA-FD-A3N5 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SP 
        4.01        11.93        45.93        24.30        22.45        13.18 
TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43X 
       46.78        19.79         1.97        22.98        14.93         3.62 
TCGA-FD-A5BR TCGA-FD-A5BT TCGA-FD-A5BZ TCGA-FD-A62O TCGA-FD-A62S TCGA-FJ-A3ZE 
       13.38        11.01        27.45         4.83         6.38         3.48 
TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EO 
        3.25         6.48        61.94        30.61         5.69        35.24 
TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD 
        2.89         2.24        15.81         4.50        15.91        14.07 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A6C6 TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX 
        7.73         2.10         2.20         4.41         6.41         6.15 
TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WS 
        7.63         7.79         4.14        19.07         6.74         8.75 
TCGA-K4-A3WU TCGA-K4-A6FZ TCGA-MV-A51V TCGA-PQ-A6FI TCGA-PQ-A6FN 
        3.45         1.81        13.48        12.23        16.67 

$`20P GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A5ZZ TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O 
        7.33        12.39        11.93        19.04        32.84        12.16 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20U TCGA-BT-A2LA TCGA-BT-A2LB TCGA-BT-A3PH 
       17.88        19.50        14.96        17.16         5.59         4.67 
TCGA-BT-A3PJ TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47Y 
       12.82         0.69         0.13         0.10         0.07         0.10 
TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB 
        5.19        16.31         2.53        18.41        19.00         8.91 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I6 TCGA-DK-A3IM TCGA-DK-A3IQ 
       16.14        17.62        15.62        87.32         7.82        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WY TCGA-DK-A3X1 
       50.27        21.30         9.67         8.28       140.81        48.00 
TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B5 TCGA-E7-A3X6 TCGA-E7-A3Y1 
       64.18        48.53        64.64        32.28        24.66         0.10 
TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 
        0.49         0.53         0.56         0.66         1.38         0.82 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3SM TCGA-FD-A3SN 
       15.68         8.94        12.43        15.88        16.47        12.82 
TCGA-FD-A3SO TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43Y TCGA-FD-A5BS TCGA-FD-A5BU 
        5.52        14.96        14.93        12.13        37.15         6.87 
TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5C0 TCGA-FD-A5C1 TCGA-FD-A62N 
        5.36         5.69         6.84         6.87        49.68         2.66 
TCGA-FD-A62P TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZF TCGA-G2-A2EL TCGA-G2-A2ES 
        6.28        15.19         7.13         4.08        26.93        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A3OQ 
        7.04        20.12         0.85        17.75         1.12         3.12 
TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JZ TCGA-GV-A3QK 
       20.98         6.41         7.66        11.31         5.69         6.67 
TCGA-GV-A40E TCGA-H4-A2HO TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A4AC TCGA-K4-A54R 
        6.41         1.51         4.67         2.50         6.48        10.52 
TCGA-K4-A6MB TCGA-LC-A66R TCGA-LT-A5Z6 
        4.27         6.35         3.45 

  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              0.07               0.07 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
            130.88             140.81 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              7.79               8.94 
[1] "0.1 - 130.9 (7.8)" "0.1 - 140.8 (8.9)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" 
[1] "hr=" "1.5"
D36V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  20P GAIN MUTATED         1       30        32       34
  20P GAIN WILD-TYPE       1       35        34       24
D36V3, multiclass
           clus
vv          20P GAIN MUTATED 20P GAIN WILD-TYPE
  STAGE I                  1                  1
  STAGE II                30                 35
  STAGE III               32                 34
  STAGE IV                34                 24
                    vv
clus                 T0+T1+T2 T3 T4
  20P GAIN MUTATED         30 48 14
  20P GAIN WILD-TYPE       29 42 14
D36V4, multiclass
          clus
vv         20P GAIN MUTATED 20P GAIN WILD-TYPE
  T0+T1+T2               30                 29
  T3                     48                 42
  T4                     14                 14
                    vv
clus                 N0 N1 N2 N3
  20P GAIN MUTATED   60  9 20  5
  20P GAIN WILD-TYPE 60  9 13  2
D36V5, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  N0               60                 60
  N1                9                  9
  N2               20                 13
  N3                5                  2
                    vv
clus                 M0 M1 MX
  20P GAIN MUTATED   51  4 44
  20P GAIN WILD-TYPE 52  1 42
D36V6, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  M0               51                 52
  M1                4                  1
  MX               44                 42
D36V7, binary
                    cls
clus                  0  1
  20P GAIN MUTATED   24 75
  20P GAIN WILD-TYPE 24 72
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     24   75
  20P GAIN WILD-TYPE   24   72
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  FEMALE               24                 24
  MALE                 75                 72
D36V8, continuous
D36V9, continuous
D36V10, continuous
D36V11, continuous

Clustering(37) Variable = 20Q GAIN MUTATION ANALYSIS
D37V1, survival
                    sevent
clus2                 0  1
  20Q GAIN MUTATED   72 35
  20Q GAIN WILD-TYPE 60 21
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               107                 81 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                35                 21 
$`20Q GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20J TCGA-BT-A20N 
       40.08         2.66         6.74         6.58        19.04        32.84 
TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LD TCGA-BT-A3PK 
       19.50        14.89         8.35         8.25         3.65         2.07 
TCGA-BT-A42E TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
        9.99         8.98         1.94        23.01         0.46         0.43 
TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47X TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR 
        0.13         0.07         0.10        12.92         4.90         7.20 
TCGA-CU-A3KJ TCGA-CU-A5W6 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AC 
        5.46         1.84         2.14        31.40        18.41       130.88 
TCGA-DK-A1AD TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A3IL 
      112.44         1.81        10.59         7.79       123.85         3.98 
TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IS TCGA-DK-A3IU TCGA-DK-A3WX TCGA-DK-A3X2 
        7.82         8.22        50.27        20.02        10.55        17.98 
TCGA-DK-A6AV TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E5-A4TZ 
       64.18        67.36        15.68        21.24        43.59        15.35 
TCGA-E5-A4U1 TCGA-E7-A4IJ TCGA-E7-A541 TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B6 
       26.17         0.49         0.59         1.22        12.89         6.87 
TCGA-FD-A3B7 TCGA-FD-A3N5 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SP TCGA-FD-A3SQ 
        4.01        11.93        45.93        24.30        13.18        46.78 
TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43X TCGA-FD-A5BR 
       19.79         1.97        22.98        14.93         3.62        13.38 
TCGA-FD-A5BT TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A5C1 TCGA-FD-A62O TCGA-FD-A62S 
       11.01        27.45         6.87        49.68         4.83         6.38 
TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ 
       15.19         3.48         3.25         6.48        61.94        30.61 
TCGA-G2-A2EK TCGA-G2-A2EO TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB 
        5.69        35.24         2.89         2.24        15.81         4.50 
TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GU-A42Q 
       15.91        14.07         1.12         7.73         2.10         7.66 
TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QF TCGA-GV-A3QH 
       11.31         4.41         6.41         6.15         7.63         7.79 
TCGA-GV-A3QI TCGA-GV-A40E TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A4AC 
        4.14         6.41         6.74         8.75         3.45         6.48 
TCGA-K4-A6FZ TCGA-LT-A5Z6 TCGA-MV-A51V TCGA-PQ-A6FI TCGA-PQ-A6FN 
        1.81         3.45        13.48        12.23        16.67 

$`20Q GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A5ZZ TCGA-BT-A0YX TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20R 
        7.33        12.39        11.93        12.16        17.88         5.06 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A2LA TCGA-BT-A2LB TCGA-BT-A3PH TCGA-BT-A3PJ 
       14.96         5.06        17.16         5.59         4.67        12.82 
TCGA-CF-A27C TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47Y TCGA-CU-A3QU TCGA-CU-A3YL 
        0.69         0.10         0.07         0.10         5.19        16.31 
TCGA-DK-A1A3 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        2.53        19.00         8.91        16.14        17.62        15.62 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IV TCGA-DK-A3WW 
       87.32         2.20        10.49        21.30         9.67         8.28 
TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B5 TCGA-E7-A3X6 
      140.81        48.00        48.53        64.64        32.28        24.66 
TCGA-E7-A3Y1 TCGA-E7-A4XJ TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 
        0.10         0.53         0.56         0.66         1.38         0.82 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3SL TCGA-FD-A3SM 
       15.68         8.94        12.43        15.88        22.45        16.47 
TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43Y TCGA-FD-A5BS 
       12.82         5.52        14.96        14.93        12.13        37.15 
TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A62N TCGA-FD-A62P 
        6.87         5.36         5.69         6.84         2.66         6.28 
TCGA-FJ-A3Z9 TCGA-FJ-A3ZF TCGA-G2-A2EL TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE 
        7.13         4.08        26.93        17.26         7.04        20.12 
TCGA-G2-A3VY TCGA-GC-A3WC TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42P 
        0.85        17.75         3.12        20.98         2.20         6.41 
TCGA-GV-A3JZ TCGA-GV-A3QK TCGA-GV-A40G TCGA-H4-A2HO TCGA-K4-A3WV TCGA-K4-A4AB 
        5.69         6.67        19.07         1.51         4.67         2.50 
TCGA-K4-A54R TCGA-K4-A6MB TCGA-LC-A66R 
       10.52         4.27         6.35 

  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              0.07               0.07 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
            130.88             140.81 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              8.22               8.91 
[1] "0.1 - 130.9 (8.2)" "0.1 - 140.8 (8.9)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
[1] "hr=" "1.2"
D37V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  20Q GAIN MUTATED         1       38        35       35
  20Q GAIN WILD-TYPE       1       27        31       23
D37V3, multiclass
           clus
vv          20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  STAGE I                  1                  1
  STAGE II                38                 27
  STAGE III               35                 31
  STAGE IV                35                 23
                    vv
clus                 T0+T1+T2 T3 T4
  20Q GAIN MUTATED         36 53 13
  20Q GAIN WILD-TYPE       23 37 15
D37V4, multiclass
          clus
vv         20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  T0+T1+T2               36                 23
  T3                     53                 37
  T4                     13                 15
                    vv
clus                 N0 N1 N2 N3
  20Q GAIN MUTATED   67  9 22  5
  20Q GAIN WILD-TYPE 53  9 11  2
D37V5, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  N0               67                 53
  N1                9                  9
  N2               22                 11
  N3                5                  2
                    vv
clus                 M0 M1 MX
  20Q GAIN MUTATED   56  3 53
  20Q GAIN WILD-TYPE 47  2 33
D37V6, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  M0               56                 47
  M1                3                  2
  MX               53                 33
D37V7, binary
                    cls
clus                  0  1
  20Q GAIN MUTATED   25 87
  20Q GAIN WILD-TYPE 23 60
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     25   87
  20Q GAIN WILD-TYPE   23   60
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  FEMALE               25                 23
  MALE                 87                 60
D37V8, continuous
D37V9, continuous
D37V10, continuous
D37V11, continuous

Clustering(38) Variable = 21Q GAIN MUTATION ANALYSIS
D38V1, survival
                    sevent
clus2                 0  1
  21Q GAIN MUTATED   42 18
  21Q GAIN WILD-TYPE 90 38
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                60                128 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                18                 38 
$`21Q GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BL-A13J TCGA-BL-A5ZZ TCGA-BT-A20N TCGA-BT-A20W TCGA-BT-A2LA 
       40.08         2.66        12.39        32.84         8.35        17.16 
TCGA-BT-A2LD TCGA-BT-A3PK TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A1HS TCGA-CF-A27C 
        3.65         2.07         8.98         1.94         0.43         0.69 
TCGA-CF-A47V TCGA-CU-A3KJ TCGA-DK-A1A3 TCGA-DK-A1A7 TCGA-DK-A2I1 TCGA-DK-A2I4 
        0.10         5.46         2.53        18.41        10.59       123.85 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IS TCGA-DK-A3IV 
       87.32         2.20         3.98         7.82        50.27         9.67 
TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-E5-A4TZ TCGA-E7-A4IJ 
       48.00        17.98        67.36        15.68        15.35         0.49 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SN TCGA-FD-A3SP 
        6.87         4.01        45.93        24.30        12.82        13.18 
TCGA-FD-A3SR TCGA-FD-A43N TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A62O TCGA-FD-A62P 
       19.79        22.98        27.45         6.87         4.83         6.28 
TCGA-FJ-A3ZF TCGA-G2-A2EK TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GD-A2C5 TCGA-GD-A3OP 
        4.08         5.69         0.85         2.89         7.73         2.10 
TCGA-GU-A42P TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QF TCGA-GV-A40E TCGA-GV-A40G 
        6.41         6.41         6.15         7.63         6.41        19.07 
TCGA-H4-A2HQ TCGA-K4-A3WU TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LC-A66R TCGA-MV-A51V 
        6.74         3.45         1.81         4.27         6.35        13.48 

$`21Q GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O 
        7.33         6.74         6.58        11.93        19.04        12.16 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V 
       17.88        19.50         5.06        14.89        14.96         5.06 
TCGA-BT-A20X TCGA-BT-A2LB TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A42E TCGA-C4-A0F6 
        8.25         5.59         4.67        12.82         9.99        23.01 
TCGA-CF-A1HR TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y 
        0.46         0.13         0.07         0.07         0.10         0.10 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 
       12.92         4.90         7.20         5.19        16.31         1.84 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD 
        2.14        31.40        19.00         8.91       130.88       112.44 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A3IN 
       16.14        17.62        15.62         1.81         7.79         8.22 
TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
       10.49        21.30        20.02         8.28        10.55       140.81 
TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B5 TCGA-DK-A6B6 TCGA-E5-A2PC 
       64.18        48.53        64.64        32.28        21.24        43.59 
TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KE 
       26.17        24.66         0.10         0.53         0.59         0.56 
TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 
        0.66         1.38         0.82         1.22        12.89        15.68 
TCGA-FD-A3B5 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3SL TCGA-FD-A3SM 
        8.94        12.43        11.93        15.88        22.45        16.47 
TCGA-FD-A3SO TCGA-FD-A3SQ TCGA-FD-A3SS TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U 
        5.52        46.78         1.97        14.93        14.96        14.93 
TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU 
        3.62        12.13        13.38        37.15        11.01         6.87 
TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5C1 TCGA-FD-A62N TCGA-FD-A62S 
        5.36         5.69         6.84        49.68         2.66         6.38 
TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EF 
       15.19         7.13         3.48         3.25         6.48        61.94 
TCGA-G2-A2EJ TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE 
       30.61        26.93        35.24        17.26         7.04        20.12 
TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC 
        2.24        15.81         4.50        15.91        14.07        17.75 
TCGA-GC-A3YS TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42Q TCGA-GU-A42R 
        1.12         3.12        20.98         2.20         7.66        11.31 
TCGA-GV-A3JV TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-H4-A2HO 
        4.41         5.69         7.79         4.14         6.67         1.51 
TCGA-K4-A3WS TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A4AC TCGA-K4-A54R TCGA-LT-A5Z6 
        8.75         4.67         2.50         6.48        10.52         3.45 
TCGA-PQ-A6FI TCGA-PQ-A6FN 
       12.23        16.67 

  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              0.10               0.07 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
            123.85             140.81 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
             6.870              9.465 
[1] "0.1 - 123.8 (6.9)" "0.1 - 140.8 (9.5)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D38V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  21Q GAIN MUTATED         1       19        16       23
  21Q GAIN WILD-TYPE       1       46        50       35
D38V3, multiclass
           clus
vv          21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  STAGE I                  1                  1
  STAGE II                19                 46
  STAGE III               16                 50
  STAGE IV                23                 35
                    vv
clus                 T0+T1+T2 T3 T4
  21Q GAIN MUTATED         18 30  7
  21Q GAIN WILD-TYPE       41 60 21
D38V4, multiclass
          clus
vv         21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  T0+T1+T2               18                 41
  T3                     30                 60
  T4                      7                 21
                    vv
clus                 N0 N1 N2 N3
  21Q GAIN MUTATED   32  7 15  0
  21Q GAIN WILD-TYPE 88 11 18  7
D38V5, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  N0               32                 88
  N1                7                 11
  N2               15                 18
  N3                0                  7
                    vv
clus                 M0 M1 MX
  21Q GAIN MUTATED   31  2 27
  21Q GAIN WILD-TYPE 72  3 59
D38V6, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  M0               31                 72
  M1                2                  3
  MX               27                 59
D38V7, binary
                    cls
clus                  0  1
  21Q GAIN MUTATED   13 48
  21Q GAIN WILD-TYPE 35 99
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED     13   48
  21Q GAIN WILD-TYPE   35   99
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  FEMALE               13                 35
  MALE                 48                 99
D38V8, continuous
D38V9, continuous
D38V10, continuous
D38V11, continuous

Clustering(39) Variable = 22Q GAIN MUTATION ANALYSIS
D39V1, survival
                    sevent
clus2                  0   1
  22Q GAIN MUTATED    18   9
  22Q GAIN WILD-TYPE 114  47
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                27                161 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 9                 47 
$`22Q GAIN MUTATED`
TCGA-BL-A0C8 TCGA-BT-A0S7 TCGA-BT-A20W TCGA-BT-A2LB TCGA-BT-A3PJ TCGA-C4-A0F6 
       40.08         6.58         8.35         5.59        12.82        23.01 
TCGA-DK-A1A6 TCGA-DK-A1AD TCGA-DK-A2I6 TCGA-DK-A3IS TCGA-DK-A3IU TCGA-DK-A3WX 
       31.40       112.44        87.32        50.27        20.02        10.55 
TCGA-E7-A4IJ TCGA-E7-A541 TCGA-FD-A3B7 TCGA-FD-A62O TCGA-G2-A2EO TCGA-G2-A2ES 
        0.49         0.59         4.01         4.83        35.24        17.26 
TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3RD TCGA-GV-A3JV TCGA-GV-A3JZ TCGA-GV-A3QH 
        2.89         2.24        14.07         4.41         5.69         7.79 
TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E 
        4.14         6.67         6.41 

$`22Q GAIN WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0YX TCGA-BT-A20J 
        7.33         2.66         6.74        12.39        11.93        19.04 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       32.84        12.16        17.88        19.50         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH 
       14.96         5.06         8.25        17.16         3.65         4.67 
TCGA-BT-A3PK TCGA-BT-A42E TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A1HS 
        2.07         9.99         8.98         1.94         0.46         0.43 
TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X 
        0.69         0.13         0.07         0.10         0.07         0.10 
TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU 
        0.10        12.92         4.90         7.20         5.46         5.19 
TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A7 TCGA-DK-A1AA 
       16.31         1.84         2.53         2.14        18.41        19.00 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
        8.91       130.88        16.14        17.62        15.62         1.81 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM 
       10.59         7.79       123.85         2.20         3.98         7.82 
TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WY 
        8.22        10.49        21.30         9.67         8.28       140.81 
TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 
       48.00        17.98        64.18        48.53        64.64        67.36 
TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E5-A4U1 
       15.68        32.28        21.24        43.59        15.35        26.17 
TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4XJ TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 
       24.66         0.10         0.53         0.56         0.66         1.38 
TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
        0.82         1.22        12.89        15.68         8.94         6.87 
TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL 
       12.43        11.93        15.88        45.93        24.30        22.45 
TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR 
       16.47        12.82         5.52        13.18        46.78        19.79 
TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43X 
        1.97        22.98        14.93        14.96        14.93         3.62 
TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BV 
       12.13        13.38        37.15        11.01         6.87         5.36 
TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A5C1 TCGA-FD-A62N 
        5.69         6.84        27.45         6.87        49.68         2.66 
TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FJ-A3ZF 
        6.28         6.38        15.19         7.13         3.48         4.08 
TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        3.25         6.48        61.94        30.61         5.69        26.93 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC 
        7.04        20.12         0.85        15.81         4.50        15.91 
TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS 
       17.75         1.12         7.73         2.10         3.12        20.98 
TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JW TCGA-GV-A3JX 
        2.20         6.41         7.66        11.31         6.41         6.15 
TCGA-GV-A3QF TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        7.63        19.07         1.51         6.74         8.75         3.45 
TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB 
        4.67         2.50         6.48        10.52         1.81         4.27 
TCGA-LC-A66R TCGA-LT-A5Z6 TCGA-MV-A51V TCGA-PQ-A6FI TCGA-PQ-A6FN 
        6.35         3.45        13.48        12.23        16.67 

  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
              0.49               0.07 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
            112.44             140.81 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
              7.79               8.28 
[1] "0.5 - 112.4 (7.8)" "0.1 - 140.8 (8.3)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D39V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  22Q GAIN MUTATED         1        9        11        6
  22Q GAIN WILD-TYPE       1       56        55       52
D39V3, multiclass
           clus
vv          22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  STAGE I                  1                  1
  STAGE II                 9                 56
  STAGE III               11                 55
  STAGE IV                 6                 52
                    vv
clus                 T0+T1+T2 T3 T4
  22Q GAIN MUTATED         10 13  3
  22Q GAIN WILD-TYPE       49 77 25
D39V4, multiclass
          clus
vv         22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  T0+T1+T2               10                 49
  T3                     13                 77
  T4                      3                 25
                    vv
clus                  N0  N1  N2  N3
  22Q GAIN MUTATED    15   3   4   2
  22Q GAIN WILD-TYPE 105  15  29   5
D39V5, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  N0               15                105
  N1                3                 15
  N2                4                 29
  N3                2                  5
                    vv
clus                 M0 M1 MX
  22Q GAIN MUTATED   18  0 10
  22Q GAIN WILD-TYPE 85  5 76
D39V6, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  M0               18                 85
  M1                0                  5
  MX               10                 76
D39V7, binary
                    cls
clus                   0   1
  22Q GAIN MUTATED     5  23
  22Q GAIN WILD-TYPE  43 124
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      5   23
  22Q GAIN WILD-TYPE   43  124
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  FEMALE                5                 43
  MALE                 23                124
D39V8, continuous
D39V9, continuous
D39V10, continuous
D39V11, continuous

Clustering(40) Variable = XQ GAIN MUTATION ANALYSIS
D40V1, survival
                   sevent
clus2                 0   1
  XQ GAIN MUTATED    11   9
  XQ GAIN WILD-TYPE 121  47
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               20               168 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                9                47 
$`XQ GAIN MUTATED`
TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A20N TCGA-BT-A20P TCGA-BT-A20Q 
        2.66         6.74         6.58        32.84        17.88        19.50 
TCGA-CF-A1HS TCGA-CU-A0YN TCGA-DK-A1A6 TCGA-DK-A1AC TCGA-DK-A1AE TCGA-FD-A3B6 
        0.43        12.92        31.40       130.88        16.14         6.87 
TCGA-FD-A43P TCGA-FT-A3EE TCGA-GC-A3I6 TCGA-GD-A2C5 TCGA-GD-A3OS TCGA-GV-A3JZ 
       14.93         3.25         2.24         7.73        20.98         5.69 
TCGA-GV-A3QH TCGA-MV-A51V 
        7.79        13.48 

$`XQ GAIN WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A5ZZ TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O 
       40.08         7.33        12.39        11.93        19.04        12.16 
TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X 
        5.06        14.89        14.96         5.06         8.35         8.25 
TCGA-BT-A2LA TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK 
       17.16         5.59         3.65         4.67        12.82         2.07 
TCGA-BT-A42E TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C 
        9.99         8.98         1.94        23.01         0.46         0.69 
TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y 
        0.13         0.07         0.10         0.07         0.10         0.10 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 
        4.90         7.20         5.46         5.19        16.31         1.84 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD 
        2.53         2.14        18.41        19.00         8.91       112.44 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 
       17.62        15.62         1.81        10.59         7.79       123.85 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ 
       87.32         2.20         3.98         7.82         8.22        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX 
       50.27        21.30        20.02         9.67         8.28        10.55 
TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 
      140.81        48.00        17.98        64.18        48.53        64.64 
TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E5-A4TZ 
       67.36        15.68        32.28        21.24        43.59        15.35 
TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A541 
       26.17        24.66         0.10         0.49         0.53         0.59 
TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B3 
        0.56         0.66         1.38         0.82         1.22        12.89 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
       15.68         8.94         4.01        12.43        11.93        15.88 
TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO 
       45.93        24.30        22.45        16.47        12.82         5.52 
TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43S 
       13.18        46.78        19.79         1.97        22.98        14.96 
TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT 
       14.93         3.62        12.13        13.38        37.15        11.01 
TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C0 
        6.87         5.36         5.69         6.84        27.45         6.87 
TCGA-FD-A5C1 TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 
       49.68         2.66         4.83         6.28         6.38        15.19 
TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ 
        7.13         3.48         4.08         6.48        61.94        30.61 
TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE 
        5.69        26.93        35.24        17.26         7.04        20.12 
TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD 
        0.85         2.89        15.81         4.50        15.91        14.07 
TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A6C6 TCGA-GU-A42P 
       17.75         1.12         2.10         3.12         2.20         6.41 
TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QF 
        7.66        11.31         4.41         6.41         6.15         7.63 
TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ 
        4.14         6.67         6.41        19.07         1.51         6.74 
TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A4AC TCGA-K4-A54R 
        8.75         3.45         4.67         2.50         6.48        10.52 
TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LC-A66R TCGA-LT-A5Z6 TCGA-PQ-A6FI TCGA-PQ-A6FN 
        1.81         4.27         6.35         3.45        12.23        16.67 

  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
             0.43              0.07 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
           130.88            140.81 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
           10.355             8.265 
[1] "0.4 - 130.9 (10.4)" "0.1 - 140.8 (8.3)" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D40V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  XQ GAIN MUTATED         0        4        10        5
  XQ GAIN WILD-TYPE       2       61        56       53
D40V3, multiclass
           clus
vv          XQ GAIN MUTATED XQ GAIN WILD-TYPE
  STAGE I                 0                 2
  STAGE II                4                61
  STAGE III              10                56
  STAGE IV                5                53
                   vv
clus                T0+T1+T2 T3 T4
  XQ GAIN MUTATED          3 11  4
  XQ GAIN WILD-TYPE       56 79 24
D40V4, multiclass
          clus
vv         XQ GAIN MUTATED XQ GAIN WILD-TYPE
  T0+T1+T2               3                56
  T3                    11                79
  T4                     4                24
                   vv
clus                 N0  N1  N2  N3
  XQ GAIN MUTATED    13   1   3   1
  XQ GAIN WILD-TYPE 107  17  30   6
D40V5, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  N0              13               107
  N1               1                17
  N2               3                30
  N3               1                 6
                   vv
clus                M0 M1 MX
  XQ GAIN MUTATED   11  0  9
  XQ GAIN WILD-TYPE 92  5 77
D40V6, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  M0              11                92
  M1               0                 5
  MX               9                77
D40V7, binary
                   cls
clus                  0   1
  XQ GAIN MUTATED     5  15
  XQ GAIN WILD-TYPE  43 132
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      5   15
  XQ GAIN WILD-TYPE   43  132
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  FEMALE               5                43
  MALE                15               132
D40V8, continuous
D40V9, continuous
D40V10, continuous
D40V11, continuous

Clustering(41) Variable = 1P LOSS MUTATION ANALYSIS
D41V1, survival
                   sevent
clus2                 0   1
  1P LOSS MUTATED     8   5
  1P LOSS WILD-TYPE 124  51
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               13               175 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                5                51 
$`1P LOSS MUTATED`
TCGA-BT-A3PK TCGA-C4-A0EZ TCGA-CF-A47X TCGA-CU-A0YO TCGA-CU-A0YR TCGA-DK-A3IQ 
        2.07         8.98         0.10         4.90         7.20        10.49 
TCGA-DK-A3IT TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-FD-A62P TCGA-FJ-A3ZE TCGA-K4-A3WS 
       21.30        21.24        43.59         6.28         3.48         8.75 
TCGA-PQ-A6FI 
       12.23 

$`1P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q 
       11.93        19.04        32.84        12.16        17.88        19.50 
TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X 
        5.06        14.89        14.96         5.06         8.35         8.25 
TCGA-BT-A2LA TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A42E 
       17.16         5.59         3.65         4.67        12.82         9.99 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A47S 
        1.94        23.01         0.46         0.43         0.69         0.13 
TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A3KJ 
        0.07         0.10         0.07         0.10        12.92         5.46 
TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 
        5.19        16.31         1.84         2.53         2.14        31.40 
TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE 
       18.41        19.00         8.91       130.88       112.44        16.14 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 
       17.62        15.62         1.81        10.59         7.79       123.85 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IS 
       87.32         2.20         3.98         7.82         8.22        50.27 
TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 
       20.02         9.67         8.28        10.55       140.81        48.00 
TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B2 
       17.98        64.18        48.53        64.64        67.36        15.68 
TCGA-DK-A6B5 TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4IJ 
       32.28        15.35        26.17        24.66         0.10         0.49 
TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 
        0.53         0.59         0.56         0.66         1.38         0.82 
TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 
        1.22        12.89        15.68         8.94         6.87         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL 
       12.43        11.93        15.88        45.93        24.30        22.45 
TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR 
       16.47        12.82         5.52        13.18        46.78        19.79 
TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43X 
        1.97        22.98        14.93        14.96        14.93         3.62 
TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BV 
       12.13        13.38        37.15        11.01         6.87         5.36 
TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A5C1 TCGA-FD-A62N 
        5.69         6.84        27.45         6.87        49.68         2.66 
TCGA-FD-A62O TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZF TCGA-FT-A3EE 
        4.83         6.38        15.19         7.13         4.08         3.25 
TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        6.48        61.94        30.61         5.69        26.93        35.24 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 
       17.26         7.04        20.12         0.85         2.89         2.24 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS 
       15.81         4.50        15.91        14.07        17.75         1.12 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42P 
        7.73         2.10         3.12        20.98         2.20         6.41 
TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ 
        7.66        11.31         4.41         6.41         6.15         5.69 
TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G 
        7.63         7.79         4.14         6.67         6.41        19.07 
TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A4AC 
        1.51         6.74         3.45         4.67         2.50         6.48 
TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LC-A66R TCGA-LT-A5Z6 TCGA-MV-A51V 
       10.52         1.81         4.27         6.35         3.45        13.48 
TCGA-PQ-A6FN 
       16.67 

  1P LOSS MUTATED 1P LOSS WILD-TYPE 
             0.10              0.07 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
            43.59            140.81 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
             8.75              8.25 
[1] "0.1 - 43.6 (8.8)"  "0.1 - 140.8 (8.2)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D41V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  1P LOSS MUTATED         0        5         3        5
  1P LOSS WILD-TYPE       2       60        63       53
D41V3, multiclass
           clus
vv          1P LOSS MUTATED 1P LOSS WILD-TYPE
  STAGE I                 0                 2
  STAGE II                5                60
  STAGE III               3                63
  STAGE IV                5                53
                   vv
clus                T0+T1+T2 T3 T4
  1P LOSS MUTATED          6  5  0
  1P LOSS WILD-TYPE       53 85 28
D41V4, multiclass
          clus
vv         1P LOSS MUTATED 1P LOSS WILD-TYPE
  T0+T1+T2               6                53
  T3                     5                85
  T4                     0                28
                   vv
clus                 N0  N1  N2  N3
  1P LOSS MUTATED     7   2   2   1
  1P LOSS WILD-TYPE 113  16  31   6
D41V5, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  N0               7               113
  N1               2                16
  N2               2                31
  N3               1                 6
                   vv
clus                M0 M1 MX
  1P LOSS MUTATED    4  2  7
  1P LOSS WILD-TYPE 99  3 79
D41V6, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  M0               4                99
  M1               2                 3
  MX               7                79
D41V7, binary
                   cls
clus                  0   1
  1P LOSS MUTATED     2  11
  1P LOSS WILD-TYPE  46 136
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      2   11
  1P LOSS WILD-TYPE   46  136
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  FEMALE               2                46
  MALE                11               136
D41V8, continuous
D41V9, continuous
D41V10, continuous
D41V11, continuous

Clustering(42) Variable = 1Q LOSS MUTATION ANALYSIS
D42V1, survival
                   sevent
clus2                 0   1
  1Q LOSS MUTATED     9   6
  1Q LOSS WILD-TYPE 123  50
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               15               173 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                6                50 
$`1Q LOSS MUTATED`
TCGA-BT-A3PK TCGA-CU-A0YO TCGA-CU-A0YR TCGA-DK-A2HX TCGA-DK-A3IQ TCGA-DK-A3IT 
        2.07         4.90         7.20         1.81        10.49        21.30 
TCGA-DK-A3X1 TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E7-A4IJ TCGA-FD-A62P TCGA-FD-A62S 
       48.00        21.24        43.59         0.49         6.28         6.38 
TCGA-G2-A3IE TCGA-GC-A3RC TCGA-GV-A3QH 
       20.12        15.91         7.79 

$`1Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q 
       11.93        19.04        32.84        12.16        17.88        19.50 
TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X 
        5.06        14.89        14.96         5.06         8.35         8.25 
TCGA-BT-A2LA TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A42E 
       17.16         5.59         3.65         4.67        12.82         9.99 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C 
        8.98         1.94        23.01         0.46         0.43         0.69 
TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y 
        0.13         0.07         0.10         0.07         0.10         0.10 
TCGA-CU-A0YN TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A3 
       12.92         5.46         5.19        16.31         1.84         2.53 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC 
        2.14        31.40        18.41        19.00         8.91       130.88 
TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-DK-A2I2 
      112.44        16.14        17.62        15.62        10.59         7.79 
TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN 
      123.85        87.32         2.20         3.98         7.82         8.22 
TCGA-DK-A3IS TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
       50.27        20.02         9.67         8.28        10.55       140.81 
TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B2 
       17.98        64.18        48.53        64.64        67.36        15.68 
TCGA-DK-A6B5 TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4XJ 
       32.28        15.35        26.17        24.66         0.10         0.53 
TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV 
        0.59         0.56         0.66         1.38         0.82         1.22 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
       12.89        15.68         8.94         6.87         4.01        12.43 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM 
       11.93        15.88        45.93        24.30        22.45        16.47 
TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS 
       12.82         5.52        13.18        46.78        19.79         1.97 
TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A43Y 
       22.98        14.93        14.96        14.93         3.62        12.13 
TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BX 
       13.38        37.15        11.01         6.87         5.36         5.69 
TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A5C1 TCGA-FD-A62N TCGA-FD-A62O 
        6.84        27.45         6.87        49.68         2.66         4.83 
TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-FT-A61P 
       15.19         7.13         3.48         4.08         3.25         6.48 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
       61.94        30.61         5.69        26.93        35.24        17.26 
TCGA-G2-A3IB TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB 
        7.04         0.85         2.89         2.24        15.81         4.50 
TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
       14.07        17.75         1.12         7.73         2.10         3.12 
TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV 
       20.98         2.20         6.41         7.66        11.31         4.41 
TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QI TCGA-GV-A3QK 
        6.41         6.15         5.69         7.63         4.14         6.67 
TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        6.41        19.07         1.51         6.74         8.75         3.45 
TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB 
        4.67         2.50         6.48        10.52         1.81         4.27 
TCGA-LC-A66R TCGA-LT-A5Z6 TCGA-MV-A51V TCGA-PQ-A6FI TCGA-PQ-A6FN 
        6.35         3.45        13.48        12.23        16.67 

  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
             0.49              0.07 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
            48.00            140.81 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
             7.79              8.28 
[1] "0.5 - 48.0 (7.8)"  "0.1 - 140.8 (8.3)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED"   "1Q LOSS MUTATED" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D42V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  1Q LOSS MUTATED         0        7         4        4
  1Q LOSS WILD-TYPE       2       58        62       54
D42V3, multiclass
           clus
vv          1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  STAGE I                 0                 2
  STAGE II                7                58
  STAGE III               4                62
  STAGE IV                4                54
                   vv
clus                T0+T1+T2 T3 T4
  1Q LOSS MUTATED          6  6  0
  1Q LOSS WILD-TYPE       53 84 28
D42V4, multiclass
          clus
vv         1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  T0+T1+T2               6                53
  T3                     6                84
  T4                     0                28
                   vv
clus                 N0  N1  N2  N3
  1Q LOSS MUTATED     7   1   3   0
  1Q LOSS WILD-TYPE 113  17  30   7
D42V5, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  N0               7               113
  N1               1                17
  N2               3                30
  N3               0                 7
                   vv
clus                M0 M1 MX
  1Q LOSS MUTATED    7  0  8
  1Q LOSS WILD-TYPE 96  5 78
D42V6, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  M0               7                96
  M1               0                 5
  MX               8                78
D42V7, binary
                   cls
clus                  0   1
  1Q LOSS MUTATED     4  11
  1Q LOSS WILD-TYPE  44 136
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      4   11
  1Q LOSS WILD-TYPE   44  136
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  FEMALE               4                44
  MALE                11               136
D42V8, continuous
D42V9, continuous
D42V10, continuous
D42V11, continuous

Clustering(43) Variable = 2P LOSS MUTATION ANALYSIS
D43V1, survival
                   sevent
clus2                 0   1
  2P LOSS MUTATED    12   5
  2P LOSS WILD-TYPE 120  51
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               17               171 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                5                51 
$`2P LOSS MUTATED`
TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-DK-A2HX TCGA-DK-A3IS TCGA-DK-A3IV TCGA-E5-A4U1 
        5.46         5.19         1.81        50.27         9.67        26.17 
TCGA-FD-A3B5 TCGA-FD-A3SJ TCGA-FD-A5BR TCGA-FJ-A3ZE TCGA-G2-A2EL TCGA-GC-A3OO 
        8.94        24.30        13.38         3.48        26.93        15.81 
TCGA-GC-A3YS TCGA-GV-A3JV TCGA-GV-A3JW TCGA-K4-A3WU TCGA-MV-A51V 
        1.12         4.41         6.41         3.45        13.48 

$`2P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q 
       11.93        19.04        32.84        12.16        17.88        19.50 
TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X 
        5.06        14.89        14.96         5.06         8.35         8.25 
TCGA-BT-A2LA TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK 
       17.16         5.59         3.65         4.67        12.82         2.07 
TCGA-BT-A42E TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
        9.99         8.98         1.94        23.01         0.46         0.43 
TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X 
        0.69         0.13         0.07         0.10         0.07         0.10 
TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3YL TCGA-CU-A5W6 
        0.10        12.92         4.90         7.20        16.31         1.84 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB 
        2.53         2.14        31.40        18.41        19.00         8.91 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 
      130.88       112.44        16.14        17.62        15.62        10.59 
TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM 
        7.79       123.85        87.32         2.20         3.98         7.82 
TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WX 
        8.22        10.49        21.30        20.02         8.28        10.55 
TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 
      140.81        48.00        17.98        64.18        48.53        64.64 
TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E5-A4TZ 
       67.36        15.68        32.28        21.24        43.59        15.35 
TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KE 
       24.66         0.10         0.49         0.53         0.59         0.56 
TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 
        0.66         1.38         0.82         1.22        12.89        15.68 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA 
        6.87         4.01        12.43        11.93        15.88        45.93 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ 
       22.45        16.47        12.82         5.52        13.18        46.78 
TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U 
       19.79         1.97        22.98        14.93        14.96        14.93 
TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BV 
        3.62        12.13        37.15        11.01         6.87         5.36 
TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A5C1 TCGA-FD-A62N 
        5.69         6.84        27.45         6.87        49.68         2.66 
TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZF 
        4.83         6.28         6.38        15.19         7.13         4.08 
TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EO 
        3.25         6.48        61.94        30.61         5.69        35.24 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 
       17.26         7.04        20.12         0.85         2.89         2.24 
TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GD-A2C5 TCGA-GD-A3OP 
        4.50        15.91        14.07        17.75         7.73         2.10 
TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R 
        3.12        20.98         2.20         6.41         7.66        11.31 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK 
        6.15         5.69         7.63         7.79         4.14         6.67 
TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WV 
        6.41        19.07         1.51         6.74         8.75         4.67 
TCGA-K4-A4AB TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LC-A66R 
        2.50         6.48        10.52         1.81         4.27         6.35 
TCGA-LT-A5Z6 TCGA-PQ-A6FI TCGA-PQ-A6FN 
        3.45        12.23        16.67 

  2P LOSS MUTATED 2P LOSS WILD-TYPE 
             1.12              0.07 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
            50.27            140.81 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
             8.94              8.25 
[1] "1.1 - 50.3 (8.9)"  "0.1 - 140.8 (8.2)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "2P LOSS MUTATED"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "2P LOSS MUTATED"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "2P LOSS MUTATED"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D43V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  2P LOSS MUTATED         0        8         4        7
  2P LOSS WILD-TYPE       2       57        62       51
D43V3, multiclass
           clus
vv          2P LOSS MUTATED 2P LOSS WILD-TYPE
  STAGE I                 0                 2
  STAGE II                8                57
  STAGE III               4                62
  STAGE IV                7                51
                   vv
clus                T0+T1+T2 T3 T4
  2P LOSS MUTATED          9  6  1
  2P LOSS WILD-TYPE       50 84 27
D43V4, multiclass
          clus
vv         2P LOSS MUTATED 2P LOSS WILD-TYPE
  T0+T1+T2               9                50
  T3                     6                84
  T4                     1                27
                   vv
clus                 N0  N1  N2  N3
  2P LOSS MUTATED    10   4   2   1
  2P LOSS WILD-TYPE 110  14  31   6
D43V5, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  N0              10               110
  N1               4                14
  N2               2                31
  N3               1                 6
                   vv
clus                M0 M1 MX
  2P LOSS MUTATED   11  1  7
  2P LOSS WILD-TYPE 92  4 79
D43V6, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  M0              11                92
  M1               1                 4
  MX               7                79
D43V7, binary
                   cls
clus                  0   1
  2P LOSS MUTATED     1  18
  2P LOSS WILD-TYPE  47 129
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      1   18
  2P LOSS WILD-TYPE   47  129
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  FEMALE               1                47
  MALE                18               129
D43V8, continuous
D43V9, continuous
D43V10, continuous
D43V11, continuous

Clustering(44) Variable = 2Q LOSS MUTATION ANALYSIS
D44V1, survival
                   sevent
clus2                 0   1
  2Q LOSS MUTATED    27  14
  2Q LOSS WILD-TYPE 105  42
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               41               147 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               14                42 
$`2Q LOSS MUTATED`
TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A2LA TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-CF-A1HS 
       14.89         5.06        17.16         4.67         8.98         0.43 
TCGA-CF-A47X TCGA-CU-A0YN TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-DK-A1A7 TCGA-DK-A2HX 
        0.10        12.92         5.46         5.19        18.41         1.81 
TCGA-DK-A3IK TCGA-DK-A3IS TCGA-DK-A3IV TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6B1 
        2.20        50.27         9.67        17.98        64.18        67.36 
TCGA-DK-A6B6 TCGA-E5-A4U1 TCGA-E7-A541 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3SJ 
       21.24        26.17         0.59        15.68         8.94        24.30 
TCGA-FD-A3SR TCGA-FD-A5BR TCGA-FD-A5BV TCGA-FD-A5BZ TCGA-FD-A62N TCGA-FT-A61P 
       19.79        13.38         5.36        27.45         2.66         6.48 
TCGA-G2-A2EL TCGA-GC-A3OO TCGA-GC-A3RD TCGA-GD-A3OP TCGA-GV-A3JV TCGA-GV-A3JW 
       26.93        15.81        14.07         2.10         4.41         6.41 
TCGA-GV-A3QK TCGA-K4-A3WU TCGA-K4-A4AC TCGA-LT-A5Z6 TCGA-MV-A51V 
        6.67         3.45         6.48         3.45        13.48 

$`2Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q 
       11.93        19.04        32.84        12.16        17.88        19.50 
TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LB TCGA-BT-A2LD 
        5.06        14.96         8.35         8.25         5.59         3.65 
TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-BT-A42E TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
       12.82         2.07         9.99         1.94        23.01         0.46 
TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47Y 
        0.69         0.13         0.07         0.10         0.07         0.10 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A5 
        4.90         7.20        16.31         1.84         2.53         2.14 
TCGA-DK-A1A6 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE 
       31.40        19.00         8.91       130.88       112.44        16.14 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 
       17.62        15.62        10.59         7.79       123.85        87.32 
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IU 
        3.98         7.82         8.22        10.49        21.30        20.02 
TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A6AW TCGA-DK-A6B0 
        8.28        10.55       140.81        48.00        48.53        64.64 
TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E7-A3X6 TCGA-E7-A3Y1 
       15.68        32.28        43.59        15.35        24.66         0.10 
TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 
        0.49         0.53         0.56         0.66         1.38         0.82 
TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
        1.22        12.89         6.87         4.01        12.43        11.93 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO 
       15.88        45.93        22.45        16.47        12.82         5.52 
TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43S 
       13.18        46.78         1.97        22.98        14.93        14.96 
TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU 
       14.93         3.62        12.13        37.15        11.01         6.87 
TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5C0 TCGA-FD-A5C1 TCGA-FD-A62O TCGA-FD-A62P 
        5.69         6.84         6.87        49.68         4.83         6.28 
TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE 
        6.38        15.19         7.13         3.48         4.08         3.25 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB 
       61.94        30.61         5.69        35.24        17.26         7.04 
TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3RB TCGA-GC-A3RC 
       20.12         0.85         2.89         2.24         4.50        15.91 
TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GD-A6C6 
       17.75         1.12         7.73         3.12        20.98         2.20 
TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF 
        6.41         7.66        11.31         6.15         5.69         7.63 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ 
        7.79         4.14         6.41        19.07         1.51         6.74 
TCGA-K4-A3WS TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB 
        8.75         4.67         2.50        10.52         1.81         4.27 
TCGA-LC-A66R TCGA-PQ-A6FI TCGA-PQ-A6FN 
        6.35        12.23        16.67 

  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
             0.10              0.07 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
            67.36            140.81 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
             8.98              8.22 
[1] "0.1 - 67.4 (9.0)"  "0.1 - 140.8 (8.2)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
  "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
  "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
  "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D44V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  2Q LOSS MUTATED         0       15        10       17
  2Q LOSS WILD-TYPE       2       50        56       41
D44V3, multiclass
           clus
vv          2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  STAGE I                 0                 2
  STAGE II               15                50
  STAGE III              10                56
  STAGE IV               17                41
                   vv
clus                T0+T1+T2 T3 T4
  2Q LOSS MUTATED         15 19  6
  2Q LOSS WILD-TYPE       44 71 22
D44V4, multiclass
          clus
vv         2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  T0+T1+T2              15                44
  T3                    19                71
  T4                     6                22
                   vv
clus                N0 N1 N2 N3
  2Q LOSS MUTATED   22  6 12  0
  2Q LOSS WILD-TYPE 98 12 21  7
D44V5, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  N0              22                98
  N1               6                12
  N2              12                21
  N3               0                 7
                   vv
clus                M0 M1 MX
  2Q LOSS MUTATED   24  1 19
  2Q LOSS WILD-TYPE 79  4 67
D44V6, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  M0              24                79
  M1               1                 4
  MX              19                67
D44V7, binary
                   cls
clus                  0   1
  2Q LOSS MUTATED    12  32
  2Q LOSS WILD-TYPE  36 115
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED     12   32
  2Q LOSS WILD-TYPE   36  115
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  FEMALE              12                36
  MALE                32               115
D44V8, continuous
D44V9, continuous
D44V10, continuous
D44V11, continuous

Clustering(45) Variable = 3P LOSS MUTATION ANALYSIS
D45V1, survival
                   sevent
clus2                 0   1
  3P LOSS MUTATED    17   7
  3P LOSS WILD-TYPE 115  49
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               24               164 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
                7                49 
$`3P LOSS MUTATED`
TCGA-BT-A20V TCGA-BT-A20X TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A1HS TCGA-CU-A0YN 
        5.06         8.25         8.98         1.94         0.43        12.92 
TCGA-CU-A3KJ TCGA-DK-A1AB TCGA-DK-A2I2 TCGA-DK-A3IM TCGA-DK-A3WX TCGA-DK-A6B5 
        5.46         8.91         7.79         7.82        10.55        32.28 
TCGA-E7-A4IJ TCGA-E7-A7DV TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3N5 TCGA-FD-A43Y 
        0.49         1.22        15.68         6.87        11.93        12.13 
TCGA-FD-A5C1 TCGA-G2-A3IB TCGA-GC-A3RB TCGA-GC-A3WC TCGA-GC-A3YS TCGA-K4-A4AC 
       49.68         7.04         4.50        17.75         1.12         6.48 

$`3P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q 
       11.93        19.04        32.84        12.16        17.88        19.50 
TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A2LA TCGA-BT-A2LB 
        5.06        14.89        14.96         8.35        17.16         5.59 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-BT-A42E TCGA-C4-A0F6 
        3.65         4.67        12.82         2.07         9.99        23.01 
TCGA-CF-A1HR TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W 
        0.46         0.69         0.13         0.07         0.10         0.07 
TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3QU TCGA-CU-A3YL 
        0.10         0.10         4.90         7.20         5.19        16.31 
TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
        1.84         2.53         2.14        31.40        18.41        19.00 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
      130.88       112.44        16.14        17.62        15.62         1.81 
TCGA-DK-A2I1 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IN 
       10.59       123.85        87.32         2.20         3.98         8.22 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW 
       10.49        50.27        21.30        20.02         9.67         8.28 
TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 
      140.81        48.00        17.98        64.18        48.53        64.64 
TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E5-A4U1 
       67.36        15.68        21.24        43.59        15.35        26.17 
TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A5KF 
       24.66         0.10         0.53         0.59         0.56         0.66 
TCGA-E7-A677 TCGA-E7-A678 TCGA-FD-A3B3 TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 
        1.38         0.82        12.89         8.94         4.01        12.43 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN 
       15.88        45.93        24.30        22.45        16.47        12.82 
TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N 
        5.52        13.18        46.78        19.79         1.97        22.98 
TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A5BR TCGA-FD-A5BS 
       14.93        14.96        14.93         3.62        13.38        37.15 
TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5BZ 
       11.01         6.87         5.36         5.69         6.84        27.45 
TCGA-FD-A5C0 TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 
        6.87         2.66         4.83         6.28         6.38        15.19 
TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EF 
        7.13         3.48         4.08         3.25         6.48        61.94 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IE 
       30.61         5.69        26.93        35.24        17.26        20.12 
TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RC TCGA-GC-A3RD 
        0.85         2.89         2.24        15.81        15.91        14.07 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42P 
        7.73         2.10         3.12        20.98         2.20         6.41 
TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ 
        7.66        11.31         4.41         6.41         6.15         5.69 
TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G 
        7.63         7.79         4.14         6.67         6.41        19.07 
TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A4AB 
        1.51         6.74         8.75         3.45         4.67         2.50 
TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LC-A66R TCGA-LT-A5Z6 TCGA-MV-A51V 
       10.52         1.81         4.27         6.35         3.45        13.48 
TCGA-PQ-A6FI TCGA-PQ-A6FN 
       12.23        16.67 

  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             0.43              0.07 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
            49.68            140.81 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
            7.805             8.550 
[1] "0.4 - 49.7 (7.8)"  "0.1 - 140.8 (8.6)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D45V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  3P LOSS MUTATED         0        6         9        8
  3P LOSS WILD-TYPE       2       59        57       50
D45V3, multiclass
           clus
vv          3P LOSS MUTATED 3P LOSS WILD-TYPE
  STAGE I                 0                 2
  STAGE II                6                59
  STAGE III               9                57
  STAGE IV                8                50
                   vv
clus                T0+T1+T2 T3 T4
  3P LOSS MUTATED          5 11  7
  3P LOSS WILD-TYPE       54 79 21
D45V4, multiclass
          clus
vv         3P LOSS MUTATED 3P LOSS WILD-TYPE
  T0+T1+T2               5                54
  T3                    11                79
  T4                     7                21
                   vv
clus                 N0  N1  N2  N3
  3P LOSS MUTATED    14   2   3   2
  3P LOSS WILD-TYPE 106  16  30   5
D45V5, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  N0              14               106
  N1               2                16
  N2               3                30
  N3               2                 5
                   vv
clus                M0 M1 MX
  3P LOSS MUTATED   13  1 10
  3P LOSS WILD-TYPE 90  4 76
D45V6, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  M0              13                90
  M1               1                 4
  MX              10                76
D45V7, binary
                   cls
clus                  0   1
  3P LOSS MUTATED     9  15
  3P LOSS WILD-TYPE  39 132
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED      9   15
  3P LOSS WILD-TYPE   39  132
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  FEMALE               9                39
  MALE                15               132
D45V8, continuous
D45V9, continuous
D45V10, continuous
D45V11, continuous

Clustering(46) Variable = 3Q LOSS MUTATION ANALYSIS
D46V1, survival
                   sevent
clus2                 0   1
  3Q LOSS MUTATED     7   3
  3Q LOSS WILD-TYPE 125  53
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               10               178 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                3                53 
$`3Q LOSS MUTATED`
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CU-A0YN TCGA-DK-A3WX TCGA-DK-A6B5 TCGA-E7-A7DV 
        8.98         1.94        12.92        10.55        32.28         1.22 
TCGA-FD-A43Y TCGA-FD-A5C1 TCGA-G2-A3IB TCGA-K4-A4AC 
       12.13        49.68         7.04         6.48 

$`3Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q 
       11.93        19.04        32.84        12.16        17.88        19.50 
TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X 
        5.06        14.89        14.96         5.06         8.35         8.25 
TCGA-BT-A2LA TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK 
       17.16         5.59         3.65         4.67        12.82         2.07 
TCGA-BT-A42E TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A47S 
        9.99        23.01         0.46         0.43         0.69         0.13 
TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YO 
        0.07         0.10         0.07         0.10         0.10         4.90 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A3 
        7.20         5.46         5.19        16.31         1.84         2.53 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC 
        2.14        31.40        18.41        19.00         8.91       130.88 
TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 
      112.44        16.14        17.62        15.62         1.81        10.59 
TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM 
        7.79       123.85        87.32         2.20         3.98         7.82 
TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV 
        8.22        10.49        50.27        21.30        20.02         9.67 
TCGA-DK-A3WW TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6AW 
        8.28       140.81        48.00        17.98        64.18        48.53 
TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E5-A4TZ 
       64.64        67.36        15.68        21.24        43.59        15.35 
TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A541 
       26.17        24.66         0.10         0.49         0.53         0.59 
TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-FD-A3B3 TCGA-FD-A3B4 
        0.56         0.66         1.38         0.82        12.89        15.68 
TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
        8.94         6.87         4.01        12.43        11.93        15.88 
TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO 
       45.93        24.30        22.45        16.47        12.82         5.52 
TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43P 
       13.18        46.78        19.79         1.97        22.98        14.93 
TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT 
       14.96        14.93         3.62        13.38        37.15        11.01 
TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C0 
        6.87         5.36         5.69         6.84        27.45         6.87 
TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 
        2.66         4.83         6.28         6.38        15.19         7.13 
TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ 
        3.48         4.08         3.25         6.48        61.94        30.61 
TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IE TCGA-G2-A3VY 
        5.69        26.93        35.24        17.26        20.12         0.85 
TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD 
        2.89         2.24        15.81         4.50        15.91        14.07 
TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS 
       17.75         1.12         7.73         2.10         3.12        20.98 
TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW 
        2.20         6.41         7.66        11.31         4.41         6.41 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK 
        6.15         5.69         7.63         7.79         4.14         6.67 
TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        6.41        19.07         1.51         6.74         8.75         3.45 
TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LC-A66R 
        4.67         2.50        10.52         1.81         4.27         6.35 
TCGA-LT-A5Z6 TCGA-MV-A51V TCGA-PQ-A6FI TCGA-PQ-A6FN 
        3.45        13.48        12.23        16.67 

  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
             1.22              0.07 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            49.68            140.81 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            9.765             8.235 
[1] "1.2 - 49.7 (9.8)"  "0.1 - 140.8 (8.2)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D46V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  3Q LOSS MUTATED         0        3         4        3
  3Q LOSS WILD-TYPE       2       62        62       55
D46V3, multiclass
           clus
vv          3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  STAGE I                 0                 2
  STAGE II                3                62
  STAGE III               4                62
  STAGE IV                3                55
                   vv
clus                T0+T1+T2 T3 T4
  3Q LOSS MUTATED          2  4  3
  3Q LOSS WILD-TYPE       57 86 25
D46V4, multiclass
          clus
vv         3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  T0+T1+T2               2                57
  T3                     4                86
  T4                     3                25
                   vv
clus                 N0  N1  N2  N3
  3Q LOSS MUTATED     6   1   1   1
  3Q LOSS WILD-TYPE 114  17  32   6
D46V5, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  N0               6               114
  N1               1                17
  N2               1                32
  N3               1                 6
                   vv
clus                M0 M1 MX
  3Q LOSS MUTATED    4  1  5
  3Q LOSS WILD-TYPE 99  4 81
D46V6, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  M0               4                99
  M1               1                 4
  MX               5                81
D46V7, binary
                   cls
clus                  0   1
  3Q LOSS MUTATED     3   7
  3Q LOSS WILD-TYPE  45 140
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      3    7
  3Q LOSS WILD-TYPE   45  140
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  FEMALE               3                45
  MALE                 7               140
D46V8, continuous
D46V9, continuous
D46V10, continuous
D46V11, continuous

Clustering(47) Variable = 4P LOSS MUTATION ANALYSIS
D47V1, survival
                   sevent
clus2                0  1
  4P LOSS MUTATED   45 21
  4P LOSS WILD-TYPE 87 35
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               66               122 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               21                35 
$`4P LOSS MUTATED`
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20R TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X 
       19.04        32.84         5.06         5.06         8.35         8.25 
TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A42E TCGA-CF-A1HR TCGA-CF-A1HS 
        5.59         3.65         4.67         9.99         0.46         0.43 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-DK-A1A7 TCGA-DK-A1AD TCGA-DK-A2HX TCGA-DK-A2I1 
       12.92         4.90        18.41       112.44         1.81        10.59 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IT TCGA-DK-A3IV 
       87.32         2.20         7.82         8.22        21.30         9.67 
TCGA-DK-A3X2 TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-DK-A6B6 TCGA-E5-A4TZ TCGA-E7-A3X6 
       17.98        15.68        32.28        21.24        15.35        24.66 
TCGA-E7-A4IJ TCGA-FD-A3B3 TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3SL TCGA-FD-A3SO 
        0.49        12.89         8.94         4.01        22.45         5.52 
TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A5BR TCGA-FD-A5BU TCGA-FD-A5BY TCGA-FD-A5C1 
        1.97        22.98        13.38         6.87         6.84        49.68 
TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3ZF 
        2.66         4.83         6.28         6.38        15.19         4.08 
TCGA-G2-A3IB TCGA-GC-A3BM TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3YS TCGA-GD-A2C5 
        7.04         2.89        15.81         4.50         1.12         7.73 
TCGA-GD-A6C6 TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WS 
        2.20         7.66         4.41        19.07         6.74         8.75 
TCGA-K4-A3WV TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6MB TCGA-PQ-A6FI TCGA-PQ-A6FN 
        4.67         6.48        10.52         4.27        12.23        16.67 

$`4P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20U 
       11.93        12.16        17.88        19.50        14.89        14.96 
TCGA-BT-A2LA TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 
       17.16        12.82         2.07         8.98         1.94        23.01 
TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X 
        0.69         0.13         0.07         0.10         0.07         0.10 
TCGA-CF-A47Y TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 
        0.10         7.20         5.46         5.19        16.31         1.84 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC 
        2.53         2.14        31.40        19.00         8.91       130.88 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A3IL 
       16.14        17.62        15.62         7.79       123.85         3.98 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
       10.49        50.27        20.02         8.28        10.55       140.81 
TCGA-DK-A3X1 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-E5-A2PC 
       48.00        64.18        48.53        64.64        67.36        43.59 
TCGA-E5-A4U1 TCGA-E7-A3Y1 TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A5KF 
       26.17         0.10         0.53         0.59         0.56         0.66 
TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3B8 
        1.38         0.82         1.22        15.68         6.87        12.43 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SM TCGA-FD-A3SN 
       11.93        15.88        45.93        24.30        16.47        12.82 
TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U 
       13.18        46.78        19.79        14.93        14.96        14.93 
TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BV TCGA-FD-A5BX 
        3.62        12.13        37.15        11.01         5.36         5.69 
TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FT-A3EE TCGA-FT-A61P 
       27.45         6.87         7.13         3.48         3.25         6.48 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
       61.94        30.61         5.69        26.93        35.24        17.26 
TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC 
       20.12         0.85         2.24        15.91        14.07        17.75 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42R TCGA-GV-A3JW 
        2.10         3.12        20.98         6.41        11.31         6.41 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK 
        6.15         5.69         7.63         7.79         4.14         6.67 
TCGA-GV-A40E TCGA-H4-A2HO TCGA-K4-A3WU TCGA-K4-A4AB TCGA-K4-A6FZ TCGA-LC-A66R 
        6.41         1.51         3.45         2.50         1.81         6.35 
TCGA-LT-A5Z6 TCGA-MV-A51V 
        3.45        13.48 

  4P LOSS MUTATED 4P LOSS WILD-TYPE 
             0.43              0.07 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
           112.44            140.81 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
            7.775             9.735 
[1] "0.4 - 112.4 (7.8)" "0.1 - 140.8 (9.7)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
[1] "hr=" "1.3"
D47V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  4P LOSS MUTATED         0       20        21       25
  4P LOSS WILD-TYPE       2       45        45       33
D47V3, multiclass
           clus
vv          4P LOSS MUTATED 4P LOSS WILD-TYPE
  STAGE I                 0                 2
  STAGE II               20                45
  STAGE III              21                45
  STAGE IV               25                33
                   vv
clus                T0+T1+T2 T3 T4
  4P LOSS MUTATED         19 36  8
  4P LOSS WILD-TYPE       40 54 20
D47V4, multiclass
          clus
vv         4P LOSS MUTATED 4P LOSS WILD-TYPE
  T0+T1+T2              19                40
  T3                    36                54
  T4                     8                20
                   vv
clus                N0 N1 N2 N3
  4P LOSS MUTATED   37  9 15  1
  4P LOSS WILD-TYPE 83  9 18  6
D47V5, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  N0              37                83
  N1               9                 9
  N2              15                18
  N3               1                 6
                   vv
clus                M0 M1 MX
  4P LOSS MUTATED   32  2 34
  4P LOSS WILD-TYPE 71  3 52
D47V6, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  M0              32                71
  M1               2                 3
  MX              34                52
D47V7, binary
                   cls
clus                 0  1
  4P LOSS MUTATED   17 51
  4P LOSS WILD-TYPE 31 96
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     17   51
  4P LOSS WILD-TYPE   31   96
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  FEMALE              17                31
  MALE                51                96
D47V8, continuous
D47V9, continuous
D47V10, continuous
D47V11, continuous

Clustering(48) Variable = 4Q LOSS MUTATION ANALYSIS
D48V1, survival
                   sevent
clus2                0  1
  4Q LOSS MUTATED   49 17
  4Q LOSS WILD-TYPE 83 39
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               66               122 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               17                39 
$`4Q LOSS MUTATED`
TCGA-BT-A20R TCGA-BT-A20V TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A42E 
        5.06         5.06         5.59         3.65         4.67         9.99 
TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR 
        1.94         0.46         0.43        12.92         4.90         7.20 
TCGA-DK-A1AD TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK 
      112.44         1.81        10.59         7.79        87.32         2.20 
TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IT TCGA-DK-A6AV TCGA-DK-A6B2 TCGA-DK-A6B5 
        7.82         8.22        21.30        64.18        15.68        32.28 
TCGA-DK-A6B6 TCGA-E5-A4TZ TCGA-E7-A541 TCGA-FD-A3B3 TCGA-FD-A3B5 TCGA-FD-A3B6 
       21.24        15.35         0.59        12.89         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3SL TCGA-FD-A3SO TCGA-FD-A43N TCGA-FD-A43Y TCGA-FD-A5BR 
        4.01        22.45         5.52        22.98        12.13        13.38 
TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C1 TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62P 
        6.84        27.45        49.68         2.66         4.83         6.28 
TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3ZF TCGA-G2-A2EL TCGA-G2-A3IB TCGA-GC-A3BM 
        6.38        15.19         4.08        26.93         7.04         2.89 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A6C6 TCGA-GU-A42Q 
       15.81         4.50         1.12         7.73         2.20         7.66 
TCGA-GV-A3JV TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WV TCGA-K4-A4AC 
        4.41        19.07         6.74         8.75         4.67         6.48 
TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-MV-A51V TCGA-PQ-A6FI TCGA-PQ-A6FN 
       10.52         1.81         4.27        13.48        12.23        16.67 

$`4Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q 
       11.93        19.04        32.84        12.16        17.88        19.50 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A3PJ 
       14.89        14.96         8.35         8.25        17.16        12.82 
TCGA-BT-A3PK TCGA-C4-A0EZ TCGA-C4-A0F6 TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T 
        2.07         8.98        23.01         0.69         0.13         0.07 
TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A3KJ TCGA-CU-A3QU 
        0.10         0.07         0.10         0.10         5.46         5.19 
TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 
       16.31         1.84         2.53         2.14        31.40        18.41 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
       19.00         8.91       130.88        16.14        17.62        15.62 
TCGA-DK-A2I4 TCGA-DK-A3IL TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IU TCGA-DK-A3IV 
      123.85         3.98        10.49        50.27        20.02         9.67 
TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AW 
        8.28        10.55       140.81        48.00        17.98        48.53 
TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-E5-A2PC TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 
       64.64        67.36        43.59        26.17        24.66         0.10 
TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 
        0.49         0.53         0.56         0.66         1.38         0.82 
TCGA-E7-A7DV TCGA-FD-A3B4 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA 
        1.22        15.68        12.43        11.93        15.88        45.93 
TCGA-FD-A3SJ TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR 
       24.30        16.47        12.82        13.18        46.78        19.79 
TCGA-FD-A3SS TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A5BS 
        1.97        14.93        14.96        14.93         3.62        37.15 
TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5C0 TCGA-FJ-A3Z9 
       11.01         6.87         5.36         5.69         6.87         7.13 
TCGA-FJ-A3ZE TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK 
        3.48         3.25         6.48        61.94        30.61         5.69 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3RC 
       35.24        17.26        20.12         0.85         2.24        15.91 
TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P 
       14.07        17.75         2.10         3.12        20.98         6.41 
TCGA-GU-A42R TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH 
       11.31         6.41         6.15         5.69         7.63         7.79 
TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-H4-A2HO TCGA-K4-A3WU TCGA-K4-A4AB 
        4.14         6.67         6.41         1.51         3.45         2.50 
TCGA-LC-A66R TCGA-LT-A5Z6 
        6.35         3.45 

  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
             0.43              0.07 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
           112.44            140.81 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
             7.43             10.08 
[1] "0.4 - 112.4 (7.4)"  "0.1 - 140.8 (10.1)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
[1] "hr=" "1"  
D48V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  4Q LOSS MUTATED         0       19        23       24
  4Q LOSS WILD-TYPE       2       46        43       34
D48V3, multiclass
           clus
vv          4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  STAGE I                 0                 2
  STAGE II               19                46
  STAGE III              23                43
  STAGE IV               24                34
                   vv
clus                T0+T1+T2 T3 T4
  4Q LOSS MUTATED         19 37  7
  4Q LOSS WILD-TYPE       40 53 21
D48V4, multiclass
          clus
vv         4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  T0+T1+T2              19                40
  T3                    37                53
  T4                     7                21
                   vv
clus                N0 N1 N2 N3
  4Q LOSS MUTATED   41 10 13  1
  4Q LOSS WILD-TYPE 79  8 20  6
D48V5, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  N0              41                79
  N1              10                 8
  N2              13                20
  N3               1                 6
                   vv
clus                M0 M1 MX
  4Q LOSS MUTATED   31  2 35
  4Q LOSS WILD-TYPE 72  3 51
D48V6, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  M0              31                72
  M1               2                 3
  MX              35                51
D48V7, binary
                   cls
clus                 0  1
  4Q LOSS MUTATED   19 49
  4Q LOSS WILD-TYPE 29 98
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     19   49
  4Q LOSS WILD-TYPE   29   98
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  FEMALE              19                29
  MALE                49                98
D48V8, continuous
D48V9, continuous
D48V10, continuous
D48V11, continuous

Clustering(49) Variable = 5P LOSS MUTATION ANALYSIS
D49V1, survival
                   sevent
clus2                 0   1
  5P LOSS MUTATED    21   8
  5P LOSS WILD-TYPE 111  48
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               29               159 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                8                48 
$`5P LOSS MUTATED`
TCGA-BT-A0S7 TCGA-BT-A20J TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0F6 
        6.58        19.04         5.59         3.65         4.67        23.01 
TCGA-CF-A1HR TCGA-DK-A1A7 TCGA-DK-A1AD TCGA-DK-A2I1 TCGA-DK-A3IL TCGA-DK-A3IM 
        0.46        18.41       112.44        10.59         3.98         7.82 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3X1 TCGA-E5-A2PC TCGA-FD-A3B6 TCGA-FD-A3SJ 
       50.27        21.30        48.00        43.59         6.87        24.30 
TCGA-FD-A3SL TCGA-FD-A43U TCGA-FD-A5BZ TCGA-FJ-A3ZE TCGA-G2-A2EF TCGA-G2-A3VY 
       22.45        14.93        27.45         3.48        61.94         0.85 
TCGA-GD-A6C6 TCGA-GV-A3JW TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A4AB 
        2.20         6.41         3.45         4.67         2.50 

$`5P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0YX 
       40.08         7.33         2.66         6.74        12.39        11.93 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T 
       32.84        12.16        17.88        19.50         5.06        14.89 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A3PJ 
       14.96         5.06         8.35         8.25        17.16        12.82 
TCGA-BT-A3PK TCGA-BT-A42E TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A1HS TCGA-CF-A27C 
        2.07         9.99         8.98         1.94         0.43         0.69 
TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y 
        0.13         0.07         0.10         0.07         0.10         0.10 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL 
       12.92         4.90         7.20         5.46         5.19        16.31 
TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AA TCGA-DK-A1AB 
        1.84         2.53         2.14        31.40        19.00         8.91 
TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I2 
      130.88        16.14        17.62        15.62         1.81         7.79 
TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IU 
      123.85        87.32         2.20         8.22        10.49        20.02 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X2 TCGA-DK-A6AV 
        9.67         8.28        10.55       140.81        17.98        64.18 
TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-DK-A6B6 
       48.53        64.64        67.36        15.68        32.28        21.24 
TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4IJ TCGA-E7-A4XJ 
       15.35        26.17        24.66         0.10         0.49         0.53 
TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV 
        0.59         0.56         0.66         1.38         0.82         1.22 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 
       12.89        15.68         8.94         4.01        12.43        11.93 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP 
       15.88        45.93        16.47        12.82         5.52        13.18 
TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43S 
       46.78        19.79         1.97        22.98        14.93        14.96 
TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU 
        3.62        12.13        13.38        37.15        11.01         6.87 
TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5C0 TCGA-FD-A5C1 TCGA-FD-A62N 
        5.36         5.69         6.84         6.87        49.68         2.66 
TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZF 
        4.83         6.28         6.38        15.19         7.13         4.08 
TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        3.25         6.48        30.61         5.69        26.93        35.24 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO 
       17.26         7.04        20.12         2.89         2.24        15.81 
TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 
        4.50        15.91        14.07        17.75         1.12         7.73 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R 
        2.10         3.12        20.98         6.41         7.66        11.31 
TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI 
        4.41         6.15         5.69         7.63         7.79         4.14 
TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS 
        6.67         6.41        19.07         1.51         6.74         8.75 
TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LC-A66R TCGA-LT-A5Z6 
        6.48        10.52         1.81         4.27         6.35         3.45 
TCGA-MV-A51V TCGA-PQ-A6FI TCGA-PQ-A6FN 
       13.48        12.23        16.67 

  5P LOSS MUTATED 5P LOSS WILD-TYPE 
             0.46              0.07 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
           112.44            140.81 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
             7.82              8.28 
[1] "0.5 - 112.4 (7.8)" "0.1 - 140.8 (8.3)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "5P LOSS MUTATED"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "5P LOSS MUTATED"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "5P LOSS MUTATED"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D49V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  5P LOSS MUTATED         0        9         9       12
  5P LOSS WILD-TYPE       2       56        57       46
D49V3, multiclass
           clus
vv          5P LOSS MUTATED 5P LOSS WILD-TYPE
  STAGE I                 0                 2
  STAGE II                9                56
  STAGE III               9                57
  STAGE IV               12                46
                   vv
clus                T0+T1+T2 T3 T4
  5P LOSS MUTATED          9 14  5
  5P LOSS WILD-TYPE       50 76 23
D49V4, multiclass
          clus
vv         5P LOSS MUTATED 5P LOSS WILD-TYPE
  T0+T1+T2               9                50
  T3                    14                76
  T4                     5                23
                   vv
clus                 N0  N1  N2  N3
  5P LOSS MUTATED    17   3   7   2
  5P LOSS WILD-TYPE 103  15  26   5
D49V5, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  N0              17               103
  N1               3                15
  N2               7                26
  N3               2                 5
                   vv
clus                M0 M1 MX
  5P LOSS MUTATED   14  2 14
  5P LOSS WILD-TYPE 89  3 72
D49V6, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  M0              14                89
  M1               2                 3
  MX              14                72
D49V7, binary
                   cls
clus                  0   1
  5P LOSS MUTATED    10  21
  5P LOSS WILD-TYPE  38 126
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED     10   21
  5P LOSS WILD-TYPE   38  126
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  FEMALE              10                38
  MALE                21               126
D49V8, continuous
D49V9, continuous
D49V10, continuous
D49V11, continuous

Clustering(50) Variable = 5Q LOSS MUTATION ANALYSIS
D50V1, survival
                   sevent
clus2                0  1
  5Q LOSS MUTATED   48 22
  5Q LOSS WILD-TYPE 84 34
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               70               118 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               22                34 
$`5Q LOSS MUTATED`
TCGA-BT-A0S7 TCGA-BT-A20J TCGA-BT-A20R TCGA-BT-A20V TCGA-BT-A2LD TCGA-BT-A3PH 
        6.58        19.04         5.06         5.06         3.65         4.67 
TCGA-BT-A3PJ TCGA-BT-A42E TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CU-A3QU TCGA-DK-A1A5 
       12.82         9.99        23.01         0.46         5.19         2.14 
TCGA-DK-A1AD TCGA-DK-A2I1 TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ 
      112.44        10.59         3.98         7.82         8.22        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3WX TCGA-DK-A3X1 TCGA-DK-A6B2 
       50.27        21.30        20.02        10.55        48.00        15.68 
TCGA-DK-A6B5 TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E7-A3X6 TCGA-E7-A4IJ TCGA-FD-A3B5 
       32.28        43.59        15.35        24.66         0.49         8.94 
TCGA-FD-A3B6 TCGA-FD-A3N5 TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN 
        6.87        11.93        24.30        22.45        16.47        12.82 
TCGA-FD-A3SP TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43U TCGA-FD-A5BR TCGA-FD-A5BV 
       13.18        19.79         1.97        14.93        13.38         5.36 
TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A62O TCGA-FD-A62S TCGA-FJ-A3ZE 
        6.84        27.45         6.87         4.83         6.38         3.48 
TCGA-FJ-A3ZF TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY 
        4.08         6.48        61.94         7.04        20.12         0.85 
TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GV-A3JW 
        1.12         7.73         2.10         2.20         6.41         6.41 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WU 
        6.15         5.69         7.63        19.07         6.74         3.45 
TCGA-K4-A4AB TCGA-K4-A54R TCGA-K4-A6FZ TCGA-PQ-A6FN 
        2.50        10.52         1.81        16.67 

$`5Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0YX 
       40.08         7.33         2.66         6.74        12.39        11.93 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20U 
       32.84        12.16        17.88        19.50        14.89        14.96 
TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LB TCGA-BT-A3PK TCGA-C4-A0EZ 
        8.35         8.25        17.16         5.59         2.07         8.98 
TCGA-C4-A0F0 TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V 
        1.94         0.43         0.69         0.13         0.07         0.10 
TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR 
        0.07         0.10         0.10        12.92         4.90         7.20 
TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1A7 
        5.46        16.31         1.84         2.53        31.40        18.41 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
       19.00         8.91       130.88        16.14        17.62        15.62 
TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IV 
        1.81         7.79       123.85        87.32         2.20         9.67 
TCGA-DK-A3WW TCGA-DK-A3WY TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 
        8.28       140.81        17.98        64.18        48.53        64.64 
TCGA-DK-A6B1 TCGA-DK-A6B6 TCGA-E5-A4U1 TCGA-E7-A3Y1 TCGA-E7-A4XJ TCGA-E7-A541 
       67.36        21.24        26.17         0.10         0.53         0.59 
TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B3 
        0.56         0.66         1.38         0.82         1.22        12.89 
TCGA-FD-A3B4 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SO 
       15.68         4.01        12.43        15.88        45.93         5.52 
TCGA-FD-A3SQ TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43X TCGA-FD-A43Y 
       46.78        22.98        14.93        14.96         3.62        12.13 
TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BX TCGA-FD-A5C1 TCGA-FD-A62N 
       37.15        11.01         6.87         5.69        49.68         2.66 
TCGA-FD-A62P TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EK 
        6.28        15.19         7.13         3.25        30.61         5.69 
TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO 
       26.93        35.24        17.26         2.89         2.24        15.81 
TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GD-A3OQ TCGA-GD-A3OS 
        4.50        15.91        14.07        17.75         3.12        20.98 
TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK 
        7.66        11.31         4.41         7.79         4.14         6.67 
TCGA-GV-A40E TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WV TCGA-K4-A4AC TCGA-K4-A6MB 
        6.41         1.51         8.75         4.67         6.48         4.27 
TCGA-LC-A66R TCGA-LT-A5Z6 TCGA-MV-A51V TCGA-PQ-A6FI 
        6.35         3.45        13.48        12.23 

  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
             0.46              0.07 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
           112.44            140.81 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
            7.775             8.550 
[1] "0.5 - 112.4 (7.8)" "0.1 - 140.8 (8.6)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
[1] "hr=" "1.1"
D50V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  5Q LOSS MUTATED         0       18        22       31
  5Q LOSS WILD-TYPE       2       47        44       27
D50V3, multiclass
           clus
vv          5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  STAGE I                 0                 2
  STAGE II               18                47
  STAGE III              22                44
  STAGE IV               31                27
                   vv
clus                T0+T1+T2 T3 T4
  5Q LOSS MUTATED         18 34 13
  5Q LOSS WILD-TYPE       41 56 15
D50V4, multiclass
          clus
vv         5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  T0+T1+T2              18                41
  T3                    34                56
  T4                    13                15
                   vv
clus                N0 N1 N2 N3
  5Q LOSS MUTATED   34  9 17  5
  5Q LOSS WILD-TYPE 86  9 16  2
D50V5, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  N0              34                86
  N1               9                 9
  N2              17                16
  N3               5                 2
                   vv
clus                M0 M1 MX
  5Q LOSS MUTATED   28  4 39
  5Q LOSS WILD-TYPE 75  1 47
D50V6, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  M0              28                75
  M1               4                 1
  MX              39                47
D50V7, binary
                   cls
clus                 0  1
  5Q LOSS MUTATED   18 54
  5Q LOSS WILD-TYPE 30 93
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     18   54
  5Q LOSS WILD-TYPE   30   93
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  FEMALE              18                30
  MALE                54                93
D50V8, continuous
D50V9, continuous
D50V10, continuous
D50V11, continuous

Clustering(51) Variable = 6P LOSS MUTATION ANALYSIS
D51V1, survival
                   sevent
clus2                 0   1
  6P LOSS MUTATED    32  14
  6P LOSS WILD-TYPE 100  42
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               46               142 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               14                42 
$`6P LOSS MUTATED`
TCGA-BT-A20N TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH 
       32.84         5.06         8.25         5.59         3.65         4.67 
TCGA-CF-A1HR TCGA-CF-A47X TCGA-CU-A3QU TCGA-CU-A5W6 TCGA-DK-A1AB TCGA-DK-A2HX 
        0.46         0.10         5.19         1.84         8.91         1.81 
TCGA-DK-A2I4 TCGA-DK-A3IL TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3X2 
      123.85         3.98        10.49        50.27        21.30        17.98 
TCGA-DK-A6AV TCGA-DK-A6B5 TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E5-A4U1 
       64.18        32.28        21.24        43.59        15.35        26.17 
TCGA-E7-A5KE TCGA-FD-A3SL TCGA-FD-A3SN TCGA-FD-A3SQ TCGA-FD-A43U TCGA-FD-A43Y 
        0.56        22.45        12.82        46.78        14.93        12.13 
TCGA-FD-A5BV TCGA-FD-A62O TCGA-FJ-A3Z7 TCGA-FJ-A3ZF TCGA-G2-A2EO TCGA-G2-A3IE 
        5.36         4.83        15.19         4.08        35.24        20.12 
TCGA-GC-A3RB TCGA-GC-A3RD TCGA-GD-A3OP TCGA-GV-A3JW TCGA-GV-A3JZ TCGA-H4-A2HQ 
        4.50        14.07         2.10         6.41         5.69         6.74 
TCGA-K4-A4AB TCGA-K4-A6FZ TCGA-MV-A51V TCGA-PQ-A6FN 
        2.50         1.81        13.48        16.67 

$`6P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       11.93        19.04        12.16        17.88        19.50         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A2LA TCGA-BT-A3PJ TCGA-BT-A3PK 
       14.89        14.96         8.35        17.16        12.82         2.07 
TCGA-BT-A42E TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HS TCGA-CF-A27C 
        9.99         8.98         1.94        23.01         0.43         0.69 
TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47Y TCGA-CU-A0YN 
        0.13         0.07         0.10         0.07         0.10        12.92 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 
        4.90         7.20         5.46        16.31         2.53         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE 
       31.40        18.41        19.00       130.88       112.44        16.14 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK 
       17.62        15.62        10.59         7.79        87.32         2.20 
TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX 
        7.82         8.22        20.02         9.67         8.28        10.55 
TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B2 
      140.81        48.00        48.53        64.64        67.36        15.68 
TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KF 
       24.66         0.10         0.49         0.53         0.59         0.66 
TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 
        1.38         0.82         1.22        12.89        15.68         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA 
        6.87         4.01        12.43        11.93        15.88        45.93 
TCGA-FD-A3SJ TCGA-FD-A3SM TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SR TCGA-FD-A3SS 
       24.30        16.47         5.52        13.18        19.79         1.97 
TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43X TCGA-FD-A5BR TCGA-FD-A5BS 
       22.98        14.93        14.96         3.62        13.38        37.15 
TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C0 
       11.01         6.87         5.69         6.84        27.45         6.87 
TCGA-FD-A5C1 TCGA-FD-A62N TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z9 TCGA-FJ-A3ZE 
       49.68         2.66         6.28         6.38         7.13         3.48 
TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        3.25         6.48        61.94        30.61         5.69        26.93 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO 
       17.26         7.04         0.85         2.89         2.24        15.81 
TCGA-GC-A3RC TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OQ TCGA-GD-A3OS 
       15.91        17.75         1.12         7.73         3.12        20.98 
TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JX 
        2.20         6.41         7.66        11.31         4.41         6.15 
TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G 
        7.63         7.79         4.14         6.67         6.41        19.07 
TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A4AC TCGA-K4-A54R 
        1.51         8.75         3.45         4.67         6.48        10.52 
TCGA-K4-A6MB TCGA-LC-A66R TCGA-LT-A5Z6 TCGA-PQ-A6FI 
        4.27         6.35         3.45        12.23 

  6P LOSS MUTATED 6P LOSS WILD-TYPE 
             0.10              0.07 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
           123.85            140.81 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
             9.70              8.02 
[1] "0.1 - 123.8 (9.7)" "0.1 - 140.8 (8.0)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
  "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
  "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
  "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
[1] "hr=" "1.1"
D51V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  6P LOSS MUTATED         0        9        17       20
  6P LOSS WILD-TYPE       2       56        49       38
D51V3, multiclass
           clus
vv          6P LOSS MUTATED 6P LOSS WILD-TYPE
  STAGE I                 0                 2
  STAGE II                9                56
  STAGE III              17                49
  STAGE IV               20                38
                   vv
clus                T0+T1+T2 T3 T4
  6P LOSS MUTATED         10 21 13
  6P LOSS WILD-TYPE       49 69 15
D51V4, multiclass
          clus
vv         6P LOSS MUTATED 6P LOSS WILD-TYPE
  T0+T1+T2              10                49
  T3                    21                69
  T4                    13                15
                   vv
clus                N0 N1 N2 N3
  6P LOSS MUTATED   24  3 15  1
  6P LOSS WILD-TYPE 96 15 18  6
D51V5, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  N0              24                96
  N1               3                15
  N2              15                18
  N3               1                 6
                   vv
clus                M0 M1 MX
  6P LOSS MUTATED   26  2 20
  6P LOSS WILD-TYPE 77  3 66
D51V6, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  M0              26                77
  M1               2                 3
  MX              20                66
D51V7, binary
                   cls
clus                  0   1
  6P LOSS MUTATED    15  33
  6P LOSS WILD-TYPE  33 114
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED     15   33
  6P LOSS WILD-TYPE   33  114
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  FEMALE              15                33
  MALE                33               114
D51V8, continuous
D51V9, continuous
D51V10, continuous
D51V11, continuous

Clustering(52) Variable = 6Q LOSS MUTATION ANALYSIS
D52V1, survival
                   sevent
clus2                0  1
  6Q LOSS MUTATED   48 21
  6Q LOSS WILD-TYPE 84 35
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               69               119 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               21                35 
$`6Q LOSS MUTATED`
TCGA-BT-A20N TCGA-BT-A20V TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH TCGA-C4-A0F0 
       32.84         5.06         5.59         3.65         4.67         1.94 
TCGA-CF-A1HR TCGA-CF-A47X TCGA-CU-A3QU TCGA-CU-A5W6 TCGA-DK-A1A6 TCGA-DK-A1AB 
        0.46         0.10         5.19         1.84        31.40         8.91 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A3IK TCGA-DK-A3IL 
        1.81        10.59         7.79       123.85         2.20         3.98 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6B5 
       10.49        50.27        21.30        17.98        64.18        32.28 
TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A4IJ TCGA-E7-A5KE 
       21.24        43.59        15.35        26.17         0.49         0.56 
TCGA-E7-A7DV TCGA-FD-A3B5 TCGA-FD-A3SL TCGA-FD-A3SN TCGA-FD-A3SQ TCGA-FD-A3SR 
        1.22         8.94        22.45        12.82        46.78        19.79 
TCGA-FD-A43U TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BY 
       14.93        12.13        13.38         6.87         5.36         6.84 
TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 
       27.45         6.87         4.83         6.28         6.38        15.19 
TCGA-FJ-A3ZF TCGA-FT-A61P TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IE TCGA-GC-A3I6 
        4.08         6.48        35.24        17.26        20.12         2.24 
TCGA-GC-A3RB TCGA-GC-A3RD TCGA-GD-A3OP TCGA-GU-A42R TCGA-GV-A3JW TCGA-GV-A3JX 
        4.50        14.07         2.10        11.31         6.41         6.15 
TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-H4-A2HQ TCGA-K4-A4AB TCGA-K4-A6FZ 
        5.69         7.63         7.79         6.74         2.50         1.81 
TCGA-LT-A5Z6 TCGA-MV-A51V TCGA-PQ-A6FN 
        3.45        13.48        16.67 

$`6Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       11.93        19.04        12.16        17.88        19.50         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A3PJ 
       14.89        14.96         8.35         8.25        17.16        12.82 
TCGA-BT-A3PK TCGA-BT-A42E TCGA-C4-A0EZ TCGA-C4-A0F6 TCGA-CF-A1HS TCGA-CF-A27C 
        2.07         9.99         8.98        23.01         0.43         0.69 
TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47Y TCGA-CU-A0YN 
        0.13         0.07         0.10         0.07         0.10        12.92 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 
        4.90         7.20         5.46        16.31         2.53         2.14 
TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF 
       18.41        19.00       130.88       112.44        16.14        17.62 
TCGA-DK-A1AG TCGA-DK-A2I6 TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IU TCGA-DK-A3IV 
       15.62        87.32         7.82         8.22        20.02         9.67 
TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A6AW TCGA-DK-A6B0 
        8.28        10.55       140.81        48.00        48.53        64.64 
TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4XJ TCGA-E7-A541 
       67.36        15.68        24.66         0.10         0.53         0.59 
TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B6 
        0.66         1.38         0.82        12.89        15.68         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ 
        4.01        12.43        11.93        15.88        45.93        24.30 
TCGA-FD-A3SM TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43P 
       16.47         5.52        13.18         1.97        22.98        14.93 
TCGA-FD-A43S TCGA-FD-A43X TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BX TCGA-FD-A5C1 
       14.96         3.62        37.15        11.01         5.69        49.68 
TCGA-FD-A62N TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ 
        2.66         7.13         3.48         3.25        61.94        30.61 
TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A3IB TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3OO 
        5.69        26.93         7.04         0.85         2.89        15.81 
TCGA-GC-A3RC TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OQ TCGA-GD-A3OS 
       15.91        17.75         1.12         7.73         3.12        20.98 
TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A3QI TCGA-GV-A3QK 
        2.20         6.41         7.66         4.41         4.14         6.67 
TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        6.41        19.07         1.51         8.75         3.45         4.67 
TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6MB TCGA-LC-A66R TCGA-PQ-A6FI 
        6.48        10.52         4.27         6.35        12.23 

  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
             0.10              0.07 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
           123.85            140.81 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
             7.63              8.75 
[1] "0.1 - 123.8 (7.6)" "0.1 - 140.8 (8.8)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
[1] "hr=" "1.1"
D52V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  6Q LOSS MUTATED         0       20        21       29
  6Q LOSS WILD-TYPE       2       45        45       29
D52V3, multiclass
           clus
vv          6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  STAGE I                 0                 2
  STAGE II               20                45
  STAGE III              21                45
  STAGE IV               29                29
                   vv
clus                T0+T1+T2 T3 T4
  6Q LOSS MUTATED         19 32 14
  6Q LOSS WILD-TYPE       40 58 14
D52V4, multiclass
          clus
vv         6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  T0+T1+T2              19                40
  T3                    32                58
  T4                    14                14
                   vv
clus                N0 N1 N2 N3
  6Q LOSS MUTATED   35  6 19  3
  6Q LOSS WILD-TYPE 85 12 14  4
D52V5, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  N0              35                85
  N1               6                12
  N2              19                14
  N3               3                 4
                   vv
clus                M0 M1 MX
  6Q LOSS MUTATED   34  2 36
  6Q LOSS WILD-TYPE 69  3 50
D52V6, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  M0              34                69
  M1               2                 3
  MX              36                50
D52V7, binary
                   cls
clus                 0  1
  6Q LOSS MUTATED   21 51
  6Q LOSS WILD-TYPE 27 96
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED     21   51
  6Q LOSS WILD-TYPE   27   96
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  FEMALE              21                27
  MALE                51                96
D52V8, continuous
D52V9, continuous
D52V10, continuous
D52V11, continuous

Clustering(53) Variable = 7P LOSS MUTATION ANALYSIS
D53V1, survival
                   sevent
clus2                 0   1
  7P LOSS MUTATED     4   3
  7P LOSS WILD-TYPE 128  53
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                7               181 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                3                53 
$`7P LOSS MUTATED`
TCGA-BT-A20X TCGA-CF-A47X TCGA-DK-A1A5 TCGA-DK-A6B5 TCGA-FD-A5BY TCGA-GV-A3QF 
        8.25         0.10         2.14        32.28         6.84         7.63 
TCGA-K4-A3WS 
        8.75 

$`7P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q 
       11.93        19.04        32.84        12.16        17.88        19.50 
TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A2LA 
        5.06        14.89        14.96         5.06         8.35        17.16 
TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-BT-A42E 
        5.59         3.65         4.67        12.82         2.07         9.99 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C 
        8.98         1.94        23.01         0.46         0.43         0.69 
TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47Y TCGA-CU-A0YN 
        0.13         0.07         0.10         0.07         0.10        12.92 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 
        4.90         7.20         5.46         5.19        16.31         1.84 
TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC 
        2.53        31.40        18.41        19.00         8.91       130.88 
TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 
      112.44        16.14        17.62        15.62         1.81        10.59 
TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM 
        7.79       123.85        87.32         2.20         3.98         7.82 
TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV 
        8.22        10.49        50.27        21.30        20.02         9.67 
TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AV 
        8.28        10.55       140.81        48.00        17.98        64.18 
TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-DK-A6B6 TCGA-E5-A2PC 
       48.53        64.64        67.36        15.68        21.24        43.59 
TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4IJ TCGA-E7-A4XJ 
       15.35        26.17        24.66         0.10         0.49         0.53 
TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV 
        0.59         0.56         0.66         1.38         0.82         1.22 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
       12.89        15.68         8.94         6.87         4.01        12.43 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM 
       11.93        15.88        45.93        24.30        22.45        16.47 
TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS 
       12.82         5.52        13.18        46.78        19.79         1.97 
TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A43Y 
       22.98        14.93        14.96        14.93         3.62        12.13 
TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BX 
       13.38        37.15        11.01         6.87         5.36         5.69 
TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A5C1 TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62P 
       27.45         6.87        49.68         2.66         4.83         6.28 
TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE 
        6.38        15.19         7.13         3.48         4.08         3.25 
TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        6.48        61.94        30.61         5.69        26.93        35.24 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 
       17.26         7.04        20.12         0.85         2.89         2.24 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS 
       15.81         4.50        15.91        14.07        17.75         1.12 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42P 
        7.73         2.10         3.12        20.98         2.20         6.41 
TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ 
        7.66        11.31         4.41         6.41         6.15         5.69 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO 
        7.79         4.14         6.67         6.41        19.07         1.51 
TCGA-H4-A2HQ TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A4AC TCGA-K4-A54R 
        6.74         3.45         4.67         2.50         6.48        10.52 
TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LC-A66R TCGA-LT-A5Z6 TCGA-MV-A51V TCGA-PQ-A6FI 
        1.81         4.27         6.35         3.45        13.48        12.23 
TCGA-PQ-A6FN 
       16.67 

  7P LOSS MUTATED 7P LOSS WILD-TYPE 
             0.10              0.07 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            32.28            140.81 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
             7.63              8.35 
[1] "0.1 - 32.3 (7.6)"  "0.1 - 140.8 (8.3)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
[1] "hr=" "1.9"
D53V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  7P LOSS MUTATED         0        2         2        4
  7P LOSS WILD-TYPE       2       63        64       54
D53V3, multiclass
           clus
vv          7P LOSS MUTATED 7P LOSS WILD-TYPE
  STAGE I                 0                 2
  STAGE II                2                63
  STAGE III               2                64
  STAGE IV                4                54
                   vv
clus                T0+T1+T2 T3 T4
  7P LOSS MUTATED          2  4  2
  7P LOSS WILD-TYPE       57 86 26
D53V4, multiclass
          clus
vv         7P LOSS MUTATED 7P LOSS WILD-TYPE
  T0+T1+T2               2                57
  T3                     4                86
  T4                     2                26
                   vv
clus                 N0  N1  N2  N3
  7P LOSS MUTATED     4   0   3   1
  7P LOSS WILD-TYPE 116  18  30   6
D53V5, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  N0               4               116
  N1               0                18
  N2               3                30
  N3               1                 6
                   vv
clus                M0 M1 MX
  7P LOSS MUTATED    4  0  4
  7P LOSS WILD-TYPE 99  5 82
D53V6, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  M0               4                99
  M1               0                 5
  MX               4                82
D53V7, binary
                   cls
clus                  0   1
  7P LOSS MUTATED     1   7
  7P LOSS WILD-TYPE  47 140
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      1    7
  7P LOSS WILD-TYPE   47  140
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  FEMALE               1                47
  MALE                 7               140
D53V8, continuous
D53V9, continuous
D53V10, continuous
D53V11, continuous

Clustering(54) Variable = 7Q LOSS MUTATION ANALYSIS
D54V1, survival
                   sevent
clus2                 0   1
  7Q LOSS MUTATED     7   2
  7Q LOSS WILD-TYPE 125  54
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                9               179 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                2                54 
$`7Q LOSS MUTATED`
TCGA-BT-A20X TCGA-CF-A47X TCGA-DK-A1A5 TCGA-DK-A2I4 TCGA-DK-A3IK TCGA-DK-A3IM 
        8.25         0.10         2.14       123.85         2.20         7.82 
TCGA-FD-A5BY TCGA-FD-A5C0 TCGA-K4-A3WS 
        6.84         6.87         8.75 

$`7Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q 
       11.93        19.04        32.84        12.16        17.88        19.50 
TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A2LA 
        5.06        14.89        14.96         5.06         8.35        17.16 
TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-BT-A42E 
        5.59         3.65         4.67        12.82         2.07         9.99 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C 
        8.98         1.94        23.01         0.46         0.43         0.69 
TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47Y TCGA-CU-A0YN 
        0.13         0.07         0.10         0.07         0.10        12.92 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 
        4.90         7.20         5.46         5.19        16.31         1.84 
TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC 
        2.53        31.40        18.41        19.00         8.91       130.88 
TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 
      112.44        16.14        17.62        15.62         1.81        10.59 
TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IL TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS 
        7.79        87.32         3.98         8.22        10.49        50.27 
TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
       21.30        20.02         9.67         8.28        10.55       140.81 
TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 
       48.00        17.98        64.18        48.53        64.64        67.36 
TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E5-A4U1 
       15.68        32.28        21.24        43.59        15.35        26.17 
TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KE 
       24.66         0.10         0.49         0.53         0.59         0.56 
TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 
        0.66         1.38         0.82         1.22        12.89        15.68 
TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
        8.94         6.87         4.01        12.43        11.93        15.88 
TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO 
       45.93        24.30        22.45        16.47        12.82         5.52 
TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43P 
       13.18        46.78        19.79         1.97        22.98        14.93 
TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS 
       14.96        14.93         3.62        12.13        13.38        37.15 
TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BZ TCGA-FD-A5C1 
       11.01         6.87         5.36         5.69        27.45        49.68 
TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 
        2.66         4.83         6.28         6.38        15.19         7.13 
TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ 
        3.48         4.08         3.25         6.48        61.94        30.61 
TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE 
        5.69        26.93        35.24        17.26         7.04        20.12 
TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC 
        0.85         2.89         2.24        15.81         4.50        15.91 
TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
       14.07        17.75         1.12         7.73         2.10         3.12 
TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV 
       20.98         2.20         6.41         7.66        11.31         4.41 
TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI 
        6.41         6.15         5.69         7.63         7.79         4.14 
TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WU 
        6.67         6.41        19.07         1.51         6.74         3.45 
TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB 
        4.67         2.50         6.48        10.52         1.81         4.27 
TCGA-LC-A66R TCGA-LT-A5Z6 TCGA-MV-A51V TCGA-PQ-A6FI TCGA-PQ-A6FN 
        6.35         3.45        13.48        12.23        16.67 

  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
             0.10              0.07 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
           123.85            140.81 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
             6.87              8.91 
[1] "0.1 - 123.8 (6.9)" "0.1 - 140.8 (8.9)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D54V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  7Q LOSS MUTATED         0        2         4        3
  7Q LOSS WILD-TYPE       2       63        62       55
D54V3, multiclass
           clus
vv          7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  STAGE I                 0                 2
  STAGE II                2                63
  STAGE III               4                62
  STAGE IV                3                55
                   vv
clus                T0+T1+T2 T3 T4
  7Q LOSS MUTATED          2  6  1
  7Q LOSS WILD-TYPE       57 84 27
D54V4, multiclass
          clus
vv         7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  T0+T1+T2               2                57
  T3                     6                84
  T4                     1                27
                   vv
clus                 N0  N1  N2  N3
  7Q LOSS MUTATED     6   0   3   0
  7Q LOSS WILD-TYPE 114  18  30   7
D54V5, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  N0               6               114
  N1               0                18
  N2               3                30
  N3               0                 7
                   vv
clus                M0 M1 MX
  7Q LOSS MUTATED    6  0  3
  7Q LOSS WILD-TYPE 97  5 83
D54V6, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  M0               6                97
  M1               0                 5
  MX               3                83
D54V7, binary
                   cls
clus                  0   1
  7Q LOSS MUTATED     1   8
  7Q LOSS WILD-TYPE  47 139
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      1    8
  7Q LOSS WILD-TYPE   47  139
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  FEMALE               1                47
  MALE                 8               139
D54V8, continuous
[1] "Remove cluster labels:" "7Q LOSS MUTATED"       
clus
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                1                53 
       TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A3MF        TCGA-CF-A3MG 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CF-A3MH        TCGA-CF-A3MI        TCGA-CF-A47S        TCGA-CF-A47T 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47Y        TCGA-DK-A2HX 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A3IN        TCGA-DK-A3IV        TCGA-DK-A3WX        TCGA-DK-A3X2 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A6B2        TCGA-DK-A6B5        TCGA-DK-A6B6        TCGA-E5-A2PC 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-E5-A4TZ        TCGA-E5-A4U1        TCGA-E7-A519        TCGA-E7-A541 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-E7-A7DV        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RC        TCGA-GC-A3RD 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GD-A3OS        TCGA-GD-A6C6        TCGA-GV-A3JV 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-GV-A40G 
"7Q LOSS WILD-TYPE" 
D54V9, continuous
D54V10, continuous
D54V11, continuous
[1] "Remove cluster labels:" "7Q LOSS MUTATED"       
clus
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                2                40 
       TCGA-BT-A20N        TCGA-BT-A20T        TCGA-BT-A20W        TCGA-BT-A3PJ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR        TCGA-CU-A3KJ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AC        TCGA-DK-A2I6        TCGA-DK-A3IN 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU        TCGA-DK-A6B0 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DK-A6B6        TCGA-E7-A541        TCGA-FD-A3B6        TCGA-FD-A3B7 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A3NA        TCGA-FD-A3SN        TCGA-FD-A3SQ        TCGA-FD-A3SR 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A43P        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FD-A5BX        TCGA-FD-A62P        TCGA-GC-A3BM        TCGA-GC-A3RB 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-GC-A3YS        TCGA-GU-A42P        TCGA-GV-A3QF        TCGA-GV-A3QG 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A4AB        TCGA-K4-A4AC        TCGA-K4-A54R 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 

Clustering(55) Variable = 8P LOSS MUTATION ANALYSIS
D55V1, survival
                   sevent
clus2                0  1
  8P LOSS MUTATED   62 23
  8P LOSS WILD-TYPE 70 33
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               85               103 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               23                33 
$`8P LOSS MUTATED`
TCGA-BL-A13J TCGA-BT-A20W TCGA-BT-A2LB TCGA-BT-A3PK TCGA-C4-A0EZ TCGA-CF-A1HS 
        2.66         8.35         5.59         2.07         8.98         0.43 
TCGA-CF-A47S TCGA-CU-A0YN TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-DK-A1A3 TCGA-DK-A1A7 
        0.13        12.92         5.46         5.19         2.53        18.41 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I4 TCGA-DK-A2I6 
      130.88       112.44         1.81        10.59       123.85        87.32 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IT TCGA-DK-A3IV 
        2.20         3.98         7.82         8.22        21.30         9.67 
TCGA-DK-A6AV TCGA-DK-A6B5 TCGA-E5-A4TZ TCGA-E7-A541 TCGA-E7-A677 TCGA-E7-A7DV 
       64.18        32.28        15.35         0.59         1.38         1.22 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3N5 TCGA-FD-A3SJ 
       15.68         8.94         6.87         4.01        11.93        24.30 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SO TCGA-FD-A3SR TCGA-FD-A43N TCGA-FD-A43P 
       22.45        16.47         5.52        19.79        22.98        14.93 
TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BU TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C0 
       12.13        13.38         6.87         6.84        27.45         6.87 
TCGA-FD-A62N TCGA-FD-A62P TCGA-FJ-A3Z7 TCGA-FJ-A3ZF TCGA-FT-A61P TCGA-G2-A2EF 
        2.66         6.28        15.19         4.08         6.48        61.94 
TCGA-G2-A2EK TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD 
        5.69        20.12         0.85         4.50        15.91        14.07 
TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GU-A42P 
       17.75         1.12         7.73         2.10         3.12         6.41 
TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A40E 
        6.41         6.15         5.69         7.63         7.79         6.41 
TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A4AB 
       19.07         6.74         8.75         3.45         4.67         2.50 
TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LT-A5Z6 TCGA-PQ-A6FI 
        6.48        10.52         1.81         4.27         3.45        12.23 
TCGA-PQ-A6FN 
       16.67 

$`8P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 TCGA-BT-A0YX 
       40.08         7.33         6.74        12.39         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       19.04        32.84        12.16        17.88        19.50         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD 
       14.89        14.96         5.06         8.25        17.16         3.65 
TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A42E TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
        4.67        12.82         9.99         1.94        23.01         0.46 
TCGA-CF-A27C TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y 
        0.69         0.07         0.10         0.07         0.10         0.10 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A5 TCGA-DK-A1A6 
        4.90         7.20        16.31         1.84         2.14        31.40 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I2 
       19.00         8.91        16.14        17.62        15.62         7.79 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
       10.49        50.27        20.02         8.28        10.55       140.81 
TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B2 
       48.00        17.98        48.53        64.64        67.36        15.68 
TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4IJ 
       21.24        43.59        26.17        24.66         0.10         0.49 
TCGA-E7-A4XJ TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A678 TCGA-FD-A3B3 TCGA-FD-A3B8 
        0.53         0.56         0.66         0.82        12.89        12.43 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SN TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SS 
       15.88        45.93        12.82        13.18        46.78         1.97 
TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BV 
       14.96        14.93         3.62        37.15        11.01         5.36 
TCGA-FD-A5BX TCGA-FD-A5C1 TCGA-FD-A62O TCGA-FD-A62S TCGA-FJ-A3Z9 TCGA-FJ-A3ZE 
        5.69        49.68         4.83         6.38         7.13         3.48 
TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB 
        3.25        30.61        26.93        35.24        17.26         7.04 
TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42Q 
        2.89         2.24        15.81        20.98         2.20         7.66 
TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3QI TCGA-GV-A3QK TCGA-H4-A2HO TCGA-LC-A66R 
       11.31         4.41         4.14         6.67         1.51         6.35 
TCGA-MV-A51V 
       13.48 

  8P LOSS MUTATED 8P LOSS WILD-TYPE 
             0.13              0.07 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
           130.88            140.81 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
             6.87             11.01 
[1] "0.1 - 130.9 (6.9)"  "0.1 - 140.8 (11.0)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
[1] "hr=" "1"  
D55V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  8P LOSS MUTATED         0       28        24       33
  8P LOSS WILD-TYPE       2       37        42       25
D55V3, multiclass
           clus
vv          8P LOSS MUTATED 8P LOSS WILD-TYPE
  STAGE I                 0                 2
  STAGE II               28                37
  STAGE III              24                42
  STAGE IV               33                25
                   vv
clus                T0+T1+T2 T3 T4
  8P LOSS MUTATED         24 37 15
  8P LOSS WILD-TYPE       35 53 13
D55V4, multiclass
          clus
vv         8P LOSS MUTATED 8P LOSS WILD-TYPE
  T0+T1+T2              24                35
  T3                    37                53
  T4                    15                13
                   vv
clus                N0 N1 N2 N3
  8P LOSS MUTATED   46 10 19  3
  8P LOSS WILD-TYPE 74  8 14  4
D55V5, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  N0              46                74
  N1              10                 8
  N2              19                14
  N3               3                 4
                   vv
clus                M0 M1 MX
  8P LOSS MUTATED   32  4 49
  8P LOSS WILD-TYPE 71  1 37
D55V6, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  M0              32                71
  M1               4                 1
  MX              49                37
D55V7, binary
                   cls
clus                 0  1
  8P LOSS MUTATED   20 66
  8P LOSS WILD-TYPE 28 81
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     20   66
  8P LOSS WILD-TYPE   28   81
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  FEMALE              20                28
  MALE                66                81
D55V8, continuous
D55V9, continuous
D55V10, continuous
D55V11, continuous

Clustering(56) Variable = 8Q LOSS MUTATION ANALYSIS
D56V1, survival
                   sevent
clus2                 0   1
  8Q LOSS MUTATED    14   5
  8Q LOSS WILD-TYPE 118  51
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               19               169 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                5                51 
$`8Q LOSS MUTATED`
TCGA-CF-A1HS TCGA-DK-A2HX TCGA-DK-A2I4 TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A6B5 
        0.43         1.81       123.85         3.98         7.82        32.28 
TCGA-E7-A677 TCGA-E7-A7DV TCGA-FD-A3B7 TCGA-FD-A3SL TCGA-FD-A3SR TCGA-FD-A5BU 
        1.38         1.22         4.01        22.45        19.79         6.87 
TCGA-FD-A5BZ TCGA-FJ-A3Z7 TCGA-GU-A42P TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
       27.45        15.19         6.41         6.74         8.75         3.45 
TCGA-LT-A5Z6 
        3.45 

$`8Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q 
       11.93        19.04        32.84        12.16        17.88        19.50 
TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X 
        5.06        14.89        14.96         5.06         8.35         8.25 
TCGA-BT-A2LA TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK 
       17.16         5.59         3.65         4.67        12.82         2.07 
TCGA-BT-A42E TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C 
        9.99         8.98         1.94        23.01         0.46         0.69 
TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y 
        0.13         0.07         0.10         0.07         0.10         0.10 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL 
       12.92         4.90         7.20         5.46         5.19        16.31 
TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
        1.84         2.53         2.14        31.40        18.41        19.00 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        8.91       130.88       112.44        16.14        17.62        15.62 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IN TCGA-DK-A3IQ 
       10.59         7.79        87.32         2.20         8.22        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX 
       50.27        21.30        20.02         9.67         8.28        10.55 
TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 
      140.81        48.00        17.98        64.18        48.53        64.64 
TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E5-A4U1 
       67.36        15.68        21.24        43.59        15.35        26.17 
TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KE 
       24.66         0.10         0.49         0.53         0.59         0.56 
TCGA-E7-A5KF TCGA-E7-A678 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
        0.66         0.82        12.89        15.68         8.94         6.87 
TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SM 
       12.43        11.93        15.88        45.93        24.30        16.47 
TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SS TCGA-FD-A43N 
       12.82         5.52        13.18        46.78         1.97        22.98 
TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BR 
       14.93        14.96        14.93         3.62        12.13        13.38 
TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5C0 
       37.15        11.01         5.36         5.69         6.84         6.87 
TCGA-FD-A5C1 TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z9 
       49.68         2.66         4.83         6.28         6.38         7.13 
TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ 
        3.48         4.08         3.25         6.48        61.94        30.61 
TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE 
        5.69        26.93        35.24        17.26         7.04        20.12 
TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC 
        0.85         2.89         2.24        15.81         4.50        15.91 
TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
       14.07        17.75         1.12         7.73         2.10         3.12 
TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW 
       20.98         2.20         7.66        11.31         4.41         6.41 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK 
        6.15         5.69         7.63         7.79         4.14         6.67 
TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A4AC 
        6.41        19.07         1.51         4.67         2.50         6.48 
TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LC-A66R TCGA-MV-A51V TCGA-PQ-A6FI 
       10.52         1.81         4.27         6.35        13.48        12.23 
TCGA-PQ-A6FN 
       16.67 

  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             0.43              0.07 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
           123.85            140.81 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             6.74              8.91 
[1] "0.4 - 123.8 (6.7)" "0.1 - 140.8 (8.9)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D56V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  8Q LOSS MUTATED         0        3         5       10
  8Q LOSS WILD-TYPE       2       62        61       48
D56V3, multiclass
           clus
vv          8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  STAGE I                 0                 2
  STAGE II                3                62
  STAGE III               5                61
  STAGE IV               10                48
                   vv
clus                T0+T1+T2 T3 T4
  8Q LOSS MUTATED          2  9  6
  8Q LOSS WILD-TYPE       57 81 22
D56V4, multiclass
          clus
vv         8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  T0+T1+T2               2                57
  T3                     9                81
  T4                     6                22
                   vv
clus                 N0  N1  N2  N3
  8Q LOSS MUTATED     8   2   6   1
  8Q LOSS WILD-TYPE 112  16  27   6
D56V5, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  N0               8               112
  N1               2                16
  N2               6                27
  N3               1                 6
                   vv
clus                M0 M1 MX
  8Q LOSS MUTATED    8  2  9
  8Q LOSS WILD-TYPE 95  3 77
D56V6, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  M0               8                95
  M1               2                 3
  MX               9                77
D56V7, binary
                   cls
clus                  0   1
  8Q LOSS MUTATED     6  13
  8Q LOSS WILD-TYPE  42 134
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      6   13
  8Q LOSS WILD-TYPE   42  134
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  FEMALE               6                42
  MALE                13               134
D56V8, continuous
D56V9, continuous
D56V10, continuous
D56V11, continuous

Clustering(57) Variable = 9P LOSS MUTATION ANALYSIS
D57V1, survival
                   sevent
clus2                0  1
  9P LOSS MUTATED   55 23
  9P LOSS WILD-TYPE 77 33
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               78               110 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               23                33 
$`9P LOSS MUTATED`
TCGA-BT-A0S7 TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T 
        6.58        19.04        32.84        17.88        19.50        14.89 
TCGA-BT-A20W TCGA-BT-A2LB TCGA-BT-A42E TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
        8.35         5.59         9.99         1.94        23.01         0.46 
TCGA-CF-A27C TCGA-CF-A47V TCGA-CF-A47X TCGA-CU-A0YO TCGA-CU-A3KJ TCGA-CU-A5W6 
        0.69         0.10         0.10         4.90         5.46         1.84 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AF TCGA-DK-A1AG 
        2.53         2.14        19.00         8.91        17.62        15.62 
TCGA-DK-A3IK TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3WX 
        2.20         8.22        10.49        50.27        21.30        10.55 
TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-E5-A2PC 
       48.00        17.98        64.18        15.68        32.28        43.59 
TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A7DV 
       26.17        24.66         0.59         0.56         0.66         1.22 
TCGA-FD-A3B5 TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS 
        8.94        16.47        12.82        46.78        19.79         1.97 
TCGA-FD-A43N TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BV TCGA-FD-A5BZ 
       22.98         3.62        12.13        13.38         5.36        27.45 
TCGA-FD-A5C0 TCGA-FD-A5C1 TCGA-FD-A62O TCGA-FD-A62P TCGA-FT-A61P TCGA-G2-A2EO 
        6.87        49.68         4.83         6.28         6.48        35.24 
TCGA-G2-A3IB TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GD-A6C6 
        7.04         0.85         2.89        14.07         1.12         2.20 
TCGA-GU-A42Q TCGA-GV-A3JW TCGA-GV-A3QH TCGA-GV-A3QK TCGA-H4-A2HQ TCGA-K4-A3WS 
        7.66         6.41         7.79         6.67         6.74         8.75 
TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A6MB TCGA-PQ-A6FI TCGA-PQ-A6FN 
        3.45         4.67         2.50         4.27        12.23        16.67 

$`9P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0YX 
       40.08         7.33         2.66         6.74        12.39        11.93 
TCGA-BT-A20O TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A2LA 
       12.16         5.06        14.96         5.06         8.25        17.16 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-C4-A0EZ TCGA-CF-A1HS 
        3.65         4.67        12.82         2.07         8.98         0.43 
TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47W TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A0YR 
        0.13         0.07         0.07         0.10        12.92         7.20 
TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AC TCGA-DK-A1AD 
        5.19        16.31        31.40        18.41       130.88       112.44 
TCGA-DK-A1AE TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 
       16.14         1.81        10.59         7.79       123.85        87.32 
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WY 
        3.98         7.82        20.02         9.67         8.28       140.81 
TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B6 TCGA-E5-A4TZ TCGA-E7-A3Y1 
       48.53        64.64        67.36        21.24        15.35         0.10 
TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A677 TCGA-E7-A678 TCGA-FD-A3B3 TCGA-FD-A3B4 
        0.49         0.53         1.38         0.82        12.89        15.68 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA 
        6.87         4.01        12.43        11.93        15.88        45.93 
TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A43P TCGA-FD-A43S 
       24.30        22.45         5.52        13.18        14.93        14.96 
TCGA-FD-A43U TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BX TCGA-FD-A5BY 
       14.93        37.15        11.01         6.87         5.69         6.84 
TCGA-FD-A62N TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FJ-A3ZF 
        2.66         6.38        15.19         7.13         3.48         4.08 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2ES 
        3.25        61.94        30.61         5.69        26.93        17.26 
TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3WC 
       20.12         2.24        15.81         4.50        15.91        17.75 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42R 
        7.73         2.10         3.12        20.98         6.41        11.31 
TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QI TCGA-GV-A40E 
        4.41         6.15         5.69         7.63         4.14         6.41 
TCGA-GV-A40G TCGA-H4-A2HO TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6FZ TCGA-LC-A66R 
       19.07         1.51         6.48        10.52         1.81         6.35 
TCGA-LT-A5Z6 TCGA-MV-A51V 
        3.45        13.48 

  9P LOSS MUTATED 9P LOSS WILD-TYPE 
             0.10              0.07 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
            64.18            140.81 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
            8.285             8.265 
[1] "0.1 - 64.2 (8.3)"  "0.1 - 140.8 (8.3)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
[1] "hr=" "1"  
D57V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  9P LOSS MUTATED         0       26        29       25
  9P LOSS WILD-TYPE       2       39        37       33
D57V3, multiclass
           clus
vv          9P LOSS MUTATED 9P LOSS WILD-TYPE
  STAGE I                 0                 2
  STAGE II               26                39
  STAGE III              29                37
  STAGE IV               25                33
                   vv
clus                T0+T1+T2 T3 T4
  9P LOSS MUTATED         26 41 12
  9P LOSS WILD-TYPE       33 49 16
D57V4, multiclass
          clus
vv         9P LOSS MUTATED 9P LOSS WILD-TYPE
  T0+T1+T2              26                33
  T3                    41                49
  T4                    12                16
                   vv
clus                N0 N1 N2 N3
  9P LOSS MUTATED   52  7 15  2
  9P LOSS WILD-TYPE 68 11 18  5
D57V5, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  N0              52                68
  N1               7                11
  N2              15                18
  N3               2                 5
                   vv
clus                M0 M1 MX
  9P LOSS MUTATED   44  2 36
  9P LOSS WILD-TYPE 59  3 50
D57V6, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  M0              44                59
  M1               2                 3
  MX              36                50
D57V7, binary
                   cls
clus                 0  1
  9P LOSS MUTATED   18 65
  9P LOSS WILD-TYPE 30 82
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     18   65
  9P LOSS WILD-TYPE   30   82
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  FEMALE              18                30
  MALE                65                82
D57V8, continuous
D57V9, continuous
D57V10, continuous
D57V11, continuous

Clustering(58) Variable = 9Q LOSS MUTATION ANALYSIS
D58V1, survival
                   sevent
clus2                0  1
  9Q LOSS MUTATED   49 21
  9Q LOSS WILD-TYPE 83 35
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               70               118 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               21                35 
$`9Q LOSS MUTATED`
TCGA-BT-A0S7 TCGA-BT-A20N TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A2LB 
        6.58        32.84        17.88        19.50        14.89         5.59 
TCGA-BT-A42E TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47V 
        9.99        23.01         0.46         0.69         0.13         0.10 
TCGA-CF-A47X TCGA-CU-A0YO TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A5W6 TCGA-DK-A1A5 
        0.10         4.90         5.46         5.19         1.84         2.14 
TCGA-DK-A1AA TCGA-DK-A1AD TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A3IQ TCGA-DK-A3IS 
       19.00       112.44        17.62        15.62        10.49        50.27 
TCGA-DK-A3IT TCGA-DK-A3WX TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6B5 TCGA-E5-A2PC 
       21.30        10.55        17.98        64.18        32.28        43.59 
TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A7DV 
       26.17        24.66         0.59         0.56         0.66         1.22 
TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3SM TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS 
        8.94         6.87        16.47        46.78        19.79         1.97 
TCGA-FD-A43N TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BZ TCGA-FD-A5C0 
       22.98         3.62        12.13        13.38        27.45         6.87 
TCGA-FD-A5C1 TCGA-FD-A62O TCGA-FD-A62P TCGA-FT-A61P TCGA-G2-A2EK TCGA-G2-A2EL 
       49.68         4.83         6.28         6.48         5.69        26.93 
TCGA-G2-A2EO TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3RD TCGA-GD-A2C5 TCGA-GD-A3OP 
       35.24         0.85         2.89        14.07         7.73         2.10 
TCGA-GD-A6C6 TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3QH TCGA-GV-A40G TCGA-K4-A3WS 
        2.20         4.41         6.41         7.79        19.07         8.75 
TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A4AB TCGA-PQ-A6FN 
        3.45         4.67         2.50        16.67 

$`9Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0YX 
       40.08         7.33         2.66         6.74        12.39        11.93 
TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W 
       19.04        12.16         5.06        14.96         5.06         8.35 
TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK 
        8.25        17.16         3.65         4.67        12.82         2.07 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A1HS TCGA-CF-A47T TCGA-CF-A47W TCGA-CF-A47Y 
        8.98         1.94         0.43         0.07         0.07         0.10 
TCGA-CU-A0YN TCGA-CU-A0YR TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1A7 
       12.92         7.20        16.31         2.53        31.40        18.41 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
        8.91       130.88        16.14         1.81        10.59         7.79 
TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN 
      123.85        87.32         2.20         3.98         7.82         8.22 
TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A6AW 
       20.02         9.67         8.28       140.81        48.00        48.53 
TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-DK-A6B6 TCGA-E5-A4TZ TCGA-E7-A3Y1 
       64.64        67.36        15.68        21.24        15.35         0.10 
TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A677 TCGA-E7-A678 TCGA-FD-A3B3 TCGA-FD-A3B4 
        0.49         0.53         1.38         0.82        12.89        15.68 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ 
        4.01        12.43        11.93        15.88        45.93        24.30 
TCGA-FD-A3SL TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A43P TCGA-FD-A43S 
       22.45        12.82         5.52        13.18        14.93        14.96 
TCGA-FD-A43U TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BX 
       14.93        37.15        11.01         6.87         5.36         5.69 
TCGA-FD-A5BY TCGA-FD-A62N TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZE 
        6.84         2.66         6.38        15.19         7.13         3.48 
TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2ES TCGA-G2-A3IB 
        4.08         3.25        61.94        30.61        17.26         7.04 
TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3WC 
       20.12         2.24        15.81         4.50        15.91        17.75 
TCGA-GC-A3YS TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R 
        1.12         3.12        20.98         6.41         7.66        11.31 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E 
        6.15         5.69         7.63         4.14         6.67         6.41 
TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB 
        1.51         6.74         6.48        10.52         1.81         4.27 
TCGA-LC-A66R TCGA-LT-A5Z6 TCGA-MV-A51V TCGA-PQ-A6FI 
        6.35         3.45        13.48        12.23 

  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
             0.10              0.07 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
           112.44            140.81 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
            8.270             8.265 
[1] "0.1 - 112.4 (8.3)" "0.1 - 140.8 (8.3)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
[1] "hr=" "1"  
D58V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  9Q LOSS MUTATED         0       26        25       21
  9Q LOSS WILD-TYPE       2       39        41       37
D58V3, multiclass
           clus
vv          9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  STAGE I                 0                 2
  STAGE II               26                39
  STAGE III              25                41
  STAGE IV               21                37
                   vv
clus                T0+T1+T2 T3 T4
  9Q LOSS MUTATED         26 35 10
  9Q LOSS WILD-TYPE       33 55 18
D58V4, multiclass
          clus
vv         9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  T0+T1+T2              26                33
  T3                    35                55
  T4                    10                18
                   vv
clus                N0 N1 N2 N3
  9Q LOSS MUTATED   47  6 15  2
  9Q LOSS WILD-TYPE 73 12 18  5
D58V5, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  N0              47                73
  N1               6                12
  N2              15                18
  N3               2                 5
                   vv
clus                M0 M1 MX
  9Q LOSS MUTATED   39  1 34
  9Q LOSS WILD-TYPE 64  4 52
D58V6, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  M0              39                64
  M1               1                 4
  MX              34                52
D58V7, binary
                   cls
clus                 0  1
  9Q LOSS MUTATED   15 60
  9Q LOSS WILD-TYPE 33 87
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED     15   60
  9Q LOSS WILD-TYPE   33   87
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  FEMALE              15                33
  MALE                60                87
D58V8, continuous
D58V9, continuous
D58V10, continuous
D58V11, continuous

Clustering(59) Variable = 10P LOSS MUTATION ANALYSIS
D59V1, survival
                    sevent
clus2                  0   1
  10P LOSS MUTATED    28  10
  10P LOSS WILD-TYPE 104  46
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                38                150 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                10                 46 
$`10P LOSS MUTATED`
TCGA-BT-A20U TCGA-BT-A2LA TCGA-BT-A2LD TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A27C 
       14.96        17.16         3.65         1.94        23.01         0.69 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A5W6 TCGA-DK-A2I2 TCGA-DK-A3IS TCGA-DK-A6B1 
        7.20         5.46         1.84         7.79        50.27        67.36 
TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E7-A541 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B7 
       43.59        15.35         0.59        15.68         8.94         4.01 
TCGA-FD-A3N5 TCGA-FD-A3SR TCGA-FD-A43N TCGA-FD-A43Y TCGA-FD-A5BY TCGA-FJ-A3Z7 
       11.93        19.79        22.98        12.13         6.84        15.19 
TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-G2-A2EL TCGA-G2-A3IB TCGA-GC-A3BM TCGA-GC-A3RC 
        3.48         4.08        26.93         7.04         2.89        15.91 
TCGA-GV-A3JX TCGA-GV-A3QI TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WU TCGA-LT-A5Z6 
        6.15         4.14        19.07         6.74         3.45         3.45 
TCGA-MV-A51V TCGA-PQ-A6FI 
       13.48        12.23 

$`10P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q 
       11.93        19.04        32.84        12.16        17.88        19.50 
TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LB 
        5.06        14.89         5.06         8.35         8.25         5.59 
TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-BT-A42E TCGA-C4-A0EZ TCGA-CF-A1HR 
        4.67        12.82         2.07         9.99         8.98         0.46 
TCGA-CF-A1HS TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X 
        0.43         0.13         0.07         0.10         0.07         0.10 
TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 
        0.10        12.92         4.90         5.19        16.31         2.53 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC 
        2.14        31.40        18.41        19.00         8.91       130.88 
TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 
      112.44        16.14        17.62        15.62         1.81        10.59 
TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN 
      123.85        87.32         2.20         3.98         7.82         8.22 
TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX 
       10.49        21.30        20.02         9.67         8.28        10.55 
TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 
      140.81        48.00        17.98        64.18        48.53        64.64 
TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-DK-A6B6 TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 
       15.68        32.28        21.24        26.17        24.66         0.10 
TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 
        0.49         0.53         0.56         0.66         1.38         0.82 
TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B6 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA 
        1.22        12.89         6.87        12.43        15.88        45.93 
TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP 
       24.30        22.45        16.47        12.82         5.52        13.18 
TCGA-FD-A3SQ TCGA-FD-A3SS TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43X 
       46.78         1.97        14.93        14.96        14.93         3.62 
TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BX 
       13.38        37.15        11.01         6.87         5.36         5.69 
TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A5C1 TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62P 
       27.45         6.87        49.68         2.66         4.83         6.28 
TCGA-FD-A62S TCGA-FJ-A3Z9 TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ 
        6.38         7.13         3.25         6.48        61.94        30.61 
TCGA-G2-A2EK TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3I6 
        5.69        35.24        17.26        20.12         0.85         2.24 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 
       15.81         4.50        14.07        17.75         1.12         7.73 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GU-A42Q 
        2.10         3.12        20.98         2.20         6.41         7.66 
TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH 
       11.31         4.41         6.41         5.69         7.63         7.79 
TCGA-GV-A3QK TCGA-GV-A40E TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WV TCGA-K4-A4AB 
        6.67         6.41         1.51         8.75         4.67         2.50 
TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LC-A66R TCGA-PQ-A6FN 
        6.48        10.52         1.81         4.27         6.35        16.67 

  10P LOSS MUTATED 10P LOSS WILD-TYPE 
              0.59               0.07 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
             67.36             140.81 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
             8.365              8.265 
[1] "0.6 - 67.4 (8.4)"  "0.1 - 140.8 (8.3)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D59V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  10P LOSS MUTATED         0       12        15       10
  10P LOSS WILD-TYPE       2       53        51       48
D59V3, multiclass
           clus
vv          10P LOSS MUTATED 10P LOSS WILD-TYPE
  STAGE I                  0                  2
  STAGE II                12                 53
  STAGE III               15                 51
  STAGE IV                10                 48
                    vv
clus                 T0+T1+T2 T3 T4
  10P LOSS MUTATED         12 13  7
  10P LOSS WILD-TYPE       47 77 21
D59V4, multiclass
          clus
vv         10P LOSS MUTATED 10P LOSS WILD-TYPE
  T0+T1+T2               12                 47
  T3                     13                 77
  T4                      7                 21
                    vv
clus                 N0 N1 N2 N3
  10P LOSS MUTATED   26  3  4  2
  10P LOSS WILD-TYPE 94 15 29  5
D59V5, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  N0               26                 94
  N1                3                 15
  N2                4                 29
  N3                2                  5
                    vv
clus                 M0 M1 MX
  10P LOSS MUTATED   17  2 19
  10P LOSS WILD-TYPE 86  3 67
D59V6, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  M0               17                 86
  M1                2                  3
  MX               19                 67
D59V7, binary
                    cls
clus                   0   1
  10P LOSS MUTATED     8  30
  10P LOSS WILD-TYPE  40 117
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED      8   30
  10P LOSS WILD-TYPE   40  117
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  FEMALE                8                 40
  MALE                 30                117
D59V8, continuous
D59V9, continuous
D59V10, continuous
D59V11, continuous

Clustering(60) Variable = 10Q LOSS MUTATION ANALYSIS
D60V1, survival
                    sevent
clus2                 0  1
  10Q LOSS MUTATED   48 16
  10Q LOSS WILD-TYPE 84 40
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                64                124 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                16                 40 
$`10Q LOSS MUTATED`
TCGA-BT-A20N TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A2LA TCGA-BT-A2LD TCGA-C4-A0F0 
       32.84        14.96         8.35        17.16         3.65         1.94 
TCGA-C4-A0F6 TCGA-CF-A27C TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A5W6 
       23.01         0.69         7.20         5.46         5.19         1.84 
TCGA-DK-A1A5 TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL 
        2.14         1.81         7.79        87.32         2.20         3.98 
TCGA-DK-A3IM TCGA-DK-A3IS TCGA-DK-A3X1 TCGA-DK-A6B1 TCGA-DK-A6B6 TCGA-E5-A2PC 
        7.82        50.27        48.00        67.36        21.24        43.59 
TCGA-E5-A4TZ TCGA-E7-A3X6 TCGA-E7-A4IJ TCGA-E7-A541 TCGA-E7-A7DV TCGA-FD-A3B7 
       15.35        24.66         0.49         0.59         1.22         4.01 
TCGA-FD-A3N5 TCGA-FD-A3SR TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43U TCGA-FD-A43Y 
       11.93        19.79        22.98        14.93        14.93        12.13 
TCGA-FD-A5BY TCGA-FD-A5C1 TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A61P 
        6.84        49.68        15.19         3.48         4.08         6.48 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3RC TCGA-GC-A3RD 
        7.04        20.12         0.85         2.89        15.91        14.07 
TCGA-GC-A3WC TCGA-GD-A3OP TCGA-GU-A42P TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QF 
       17.75         2.10         6.41         6.41         6.15         7.63 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A4AC 
        7.79         4.14         6.74         8.75         3.45         6.48 
TCGA-K4-A6FZ TCGA-LT-A5Z6 TCGA-MV-A51V TCGA-PQ-A6FI 
        1.81         3.45        13.48        12.23 

$`10Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       11.93        19.04        12.16        17.88        19.50         5.06 
TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A2LB TCGA-BT-A3PH TCGA-BT-A3PJ 
       14.89         5.06         8.25         5.59         4.67        12.82 
TCGA-BT-A3PK TCGA-BT-A42E TCGA-C4-A0EZ TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A47S 
        2.07         9.99         8.98         0.46         0.43         0.13 
TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YN 
        0.07         0.10         0.07         0.10         0.10        12.92 
TCGA-CU-A0YO TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
        4.90        16.31         2.53        31.40        18.41        19.00 
TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
        8.91       130.88       112.44        16.14        17.62        15.62 
TCGA-DK-A2I1 TCGA-DK-A2I4 TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IU 
       10.59       123.85         8.22        10.49        21.30        20.02 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X2 TCGA-DK-A6AV 
        9.67         8.28        10.55       140.81        17.98        64.18 
TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-E5-A4U1 TCGA-E7-A3Y1 
       48.53        64.64        15.68        32.28        26.17         0.10 
TCGA-E7-A4XJ TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-FD-A3B3 
        0.53         0.56         0.66         1.38         0.82        12.89 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA 
       15.68         8.94         6.87        12.43        15.88        45.93 
TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP 
       24.30        22.45        16.47        12.82         5.52        13.18 
TCGA-FD-A3SQ TCGA-FD-A3SS TCGA-FD-A43S TCGA-FD-A43X TCGA-FD-A5BR TCGA-FD-A5BS 
       46.78         1.97        14.96         3.62        13.38        37.15 
TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BZ TCGA-FD-A5C0 
       11.01         6.87         5.36         5.69        27.45         6.87 
TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z9 TCGA-FT-A3EE 
        2.66         4.83         6.28         6.38         7.13         3.25 
TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES 
       61.94        30.61         5.69        26.93        35.24        17.26 
TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OQ 
        2.24        15.81         4.50         1.12         7.73         3.12 
TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JZ 
       20.98         2.20         7.66        11.31         4.41         5.69 
TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-K4-A3WV TCGA-K4-A4AB 
        6.67         6.41        19.07         1.51         4.67         2.50 
TCGA-K4-A54R TCGA-K4-A6MB TCGA-LC-A66R TCGA-PQ-A6FN 
       10.52         4.27         6.35        16.67 

  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
              0.49               0.07 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
             87.32             140.81 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
             7.415              9.325 
[1] "0.5 - 87.3 (7.4)"  "0.1 - 140.8 (9.3)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D60V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  10Q LOSS MUTATED         0       21        22       20
  10Q LOSS WILD-TYPE       2       44        44       38
D60V3, multiclass
           clus
vv          10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  STAGE I                  0                  2
  STAGE II                21                 44
  STAGE III               22                 44
  STAGE IV                20                 38
                    vv
clus                 T0+T1+T2 T3 T4
  10Q LOSS MUTATED         19 27  9
  10Q LOSS WILD-TYPE       40 63 19
D60V4, multiclass
          clus
vv         10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  T0+T1+T2               19                 40
  T3                     27                 63
  T4                      9                 19
                    vv
clus                 N0 N1 N2 N3
  10Q LOSS MUTATED   35  5 11  3
  10Q LOSS WILD-TYPE 85 13 22  4
D60V5, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  N0               35                 85
  N1                5                 13
  N2               11                 22
  N3                3                  4
                    vv
clus                 M0 M1 MX
  10Q LOSS MUTATED   29  2 32
  10Q LOSS WILD-TYPE 74  3 54
D60V6, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  M0               29                 74
  M1                2                  3
  MX               32                 54
D60V7, binary
                    cls
clus                  0  1
  10Q LOSS MUTATED   15 49
  10Q LOSS WILD-TYPE 33 98
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED     15   49
  10Q LOSS WILD-TYPE   33   98
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  FEMALE               15                 33
  MALE                 49                 98
D60V8, continuous
D60V9, continuous
D60V10, continuous
D60V11, continuous

Clustering(61) Variable = 11P LOSS MUTATION ANALYSIS
D61V1, survival
                    sevent
clus2                 0  1
  11P LOSS MUTATED   49 19
  11P LOSS WILD-TYPE 83 37
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                68                120 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                19                 37 
$`11P LOSS MUTATED`
TCGA-BL-A0C8 TCGA-BT-A20N TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A2LA 
       40.08        32.84        14.89         5.06         8.35        17.16 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C 
        4.67         8.98        23.01         0.46         0.43         0.69 
TCGA-CF-A47X TCGA-CU-A3KJ TCGA-CU-A5W6 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AB 
        0.10         5.46         1.84         2.14        31.40         8.91 
TCGA-DK-A1AD TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL 
      112.44         1.81        10.59        87.32         2.20         3.98 
TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3X2 TCGA-DK-A6AV 
        7.82        10.49        50.27        21.30        17.98        64.18 
TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A4IJ TCGA-E7-A541 
       43.59        15.35        26.17        24.66         0.49         0.59 
TCGA-E7-A5KE TCGA-FD-A3B5 TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SN TCGA-FD-A3SS 
        0.56         8.94        24.30        22.45        12.82         1.97 
TCGA-FD-A43N TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A5C1 
       22.98        12.13        13.38        27.45         6.87        49.68 
TCGA-FD-A62N TCGA-FD-A62O TCGA-FJ-A3Z7 TCGA-FJ-A3ZE TCGA-FT-A61P TCGA-G2-A2EO 
        2.66         4.83        15.19         3.48         6.48        35.24 
TCGA-G2-A2ES TCGA-GC-A3BM TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GD-A3OP TCGA-GD-A6C6 
       17.26         2.89        14.07         1.12         2.10         2.20 
TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3QF TCGA-GV-A40G 
        7.66        11.31         4.41         6.41         7.63        19.07 
TCGA-H4-A2HQ TCGA-K4-A6MB 
        6.74         4.27 

$`11P LOSS WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 TCGA-BT-A0YX 
        7.33         2.66         6.74        12.39         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U 
       19.04        12.16        17.88        19.50         5.06        14.96 
TCGA-BT-A20X TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-BT-A42E 
        8.25         5.59         3.65        12.82         2.07         9.99 
TCGA-C4-A0F0 TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47Y 
        1.94         0.13         0.07         0.10         0.07         0.10 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A3 
       12.92         4.90         7.20         5.19        16.31         2.53 
TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
       18.41        19.00       130.88        16.14        17.62        15.62 
TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A3IN TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW 
        7.79       123.85         8.22        20.02         9.67         8.28 
TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 
       10.55       140.81        48.00        48.53        64.64        67.36 
TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-DK-A6B6 TCGA-E7-A3Y1 TCGA-E7-A4XJ TCGA-E7-A5KF 
       15.68        32.28        21.24         0.10         0.53         0.66 
TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B6 
        1.38         0.82         1.22        12.89        15.68         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SM 
        4.01        12.43        11.93        15.88        45.93        16.47 
TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A43P TCGA-FD-A43S 
        5.52        13.18        46.78        19.79        14.93        14.96 
TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BV 
       14.93         3.62        37.15        11.01         6.87         5.36 
TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z9 TCGA-FJ-A3ZF 
        5.69         6.84         6.28         6.38         7.13         4.08 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A3IB 
        3.25        61.94        30.61         5.69        26.93         7.04 
TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC 
       20.12         0.85         2.24        15.81         4.50        15.91 
TCGA-GC-A3WC TCGA-GD-A2C5 TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GV-A3JX 
       17.75         7.73         3.12        20.98         6.41         6.15 
TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-H4-A2HO 
        5.69         7.79         4.14         6.67         6.41         1.51 
TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A4AC TCGA-K4-A54R 
        8.75         3.45         4.67         2.50         6.48        10.52 
TCGA-K4-A6FZ TCGA-LC-A66R TCGA-LT-A5Z6 TCGA-MV-A51V TCGA-PQ-A6FI TCGA-PQ-A6FN 
        1.81         6.35         3.45        13.48        12.23        16.67 

  11P LOSS MUTATED 11P LOSS WILD-TYPE 
              0.10               0.07 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
            112.44             140.81 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
             8.925              8.005 
[1] "0.1 - 112.4 (8.9)" "0.1 - 140.8 (8.0)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D61V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  11P LOSS MUTATED         1       20        18       30
  11P LOSS WILD-TYPE       1       45        48       28
D61V3, multiclass
           clus
vv          11P LOSS MUTATED 11P LOSS WILD-TYPE
  STAGE I                  1                  1
  STAGE II                20                 45
  STAGE III               18                 48
  STAGE IV                30                 28
                    vv
clus                 T0+T1+T2 T3 T4
  11P LOSS MUTATED         25 36  9
  11P LOSS WILD-TYPE       34 54 19
D61V4, multiclass
          clus
vv         11P LOSS MUTATED 11P LOSS WILD-TYPE
  T0+T1+T2               25                 34
  T3                     36                 54
  T4                      9                 19
                    vv
clus                 N0 N1 N2 N3
  11P LOSS MUTATED   37 10 17  2
  11P LOSS WILD-TYPE 83  8 16  5
D61V5, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  N0               37                 83
  N1               10                  8
  N2               17                 16
  N3                2                  5
                    vv
clus                 M0 M1 MX
  11P LOSS MUTATED   40  4 29
  11P LOSS WILD-TYPE 63  1 57
D61V6, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  M0               40                 63
  M1                4                  1
  MX               29                 57
D61V7, binary
                    cls
clus                  0  1
  11P LOSS MUTATED   16 57
  11P LOSS WILD-TYPE 32 90
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     16   57
  11P LOSS WILD-TYPE   32   90
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  FEMALE               16                 32
  MALE                 57                 90
D61V8, continuous
D61V9, continuous
D61V10, continuous
D61V11, continuous

Clustering(62) Variable = 11Q LOSS MUTATION ANALYSIS
D62V1, survival
                    sevent
clus2                 0  1
  11Q LOSS MUTATED   35 17
  11Q LOSS WILD-TYPE 97 39
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                52                136 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                17                 39 
$`11Q LOSS MUTATED`
TCGA-BL-A0C8 TCGA-BT-A20N TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A2LA 
       40.08        32.84        14.89         5.06         8.35        17.16 
TCGA-BT-A3PH TCGA-C4-A0EZ TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A47X TCGA-CU-A3KJ 
        4.67         8.98         0.43         0.69         0.10         5.46 
TCGA-CU-A5W6 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A2I1 
        1.84         2.14        31.40         8.91       112.44        10.59 
TCGA-DK-A3IL TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A6AV TCGA-DK-A6B6 
        3.98         8.22        10.49        50.27        64.18        21.24 
TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E7-A4IJ TCGA-E7-A541 TCGA-E7-A5KE TCGA-FD-A3B5 
       43.59        15.35         0.49         0.59         0.56         8.94 
TCGA-FD-A3SJ TCGA-FD-A43N TCGA-FD-A43Y TCGA-FD-A5BV TCGA-FD-A5BY TCGA-FD-A5C0 
       24.30        22.98        12.13         5.36         6.84         6.87 
TCGA-FD-A5C1 TCGA-FD-A62N TCGA-FD-A62O TCGA-FT-A61P TCGA-G2-A2EO TCGA-G2-A2ES 
       49.68         2.66         4.83         6.48        35.24        17.26 
TCGA-GC-A3BM TCGA-GC-A3YS TCGA-GD-A3OP TCGA-GD-A6C6 TCGA-GU-A42Q TCGA-GV-A3JV 
        2.89         1.12         2.10         2.20         7.66         4.41 
TCGA-GV-A3JW TCGA-GV-A3QK TCGA-GV-A40G TCGA-H4-A2HQ 
        6.41         6.67        19.07         6.74 

$`11Q LOSS WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 TCGA-BT-A0YX 
        7.33         2.66         6.74        12.39         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U 
       19.04        12.16        17.88        19.50         5.06        14.96 
TCGA-BT-A20X TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-BT-A42E 
        8.25         5.59         3.65        12.82         2.07         9.99 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V 
        1.94        23.01         0.46         0.13         0.07         0.10 
TCGA-CF-A47W TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3QU 
        0.07         0.10        12.92         4.90         7.20         5.19 
TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AC TCGA-DK-A1AE 
       16.31         2.53        18.41        19.00       130.88        16.14 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 
       17.62        15.62         1.81         7.79       123.85        87.32 
TCGA-DK-A3IK TCGA-DK-A3IM TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW 
        2.20         7.82        21.30        20.02         9.67         8.28 
TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AW TCGA-DK-A6B0 
       10.55       140.81        48.00        17.98        48.53        64.64 
TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 
       67.36        15.68        32.28        26.17        24.66         0.10 
TCGA-E7-A4XJ TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B3 
        0.53         0.66         1.38         0.82         1.22        12.89 
TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
       15.68         6.87         4.01        12.43        11.93        15.88 
TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP 
       45.93        22.45        16.47        12.82         5.52        13.18 
TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U 
       46.78        19.79         1.97        14.93        14.96        14.93 
TCGA-FD-A43X TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BX 
        3.62        13.38        37.15        11.01         6.87         5.69 
TCGA-FD-A5BZ TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZE 
       27.45         6.28         6.38        15.19         7.13         3.48 
TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        4.08         3.25        61.94        30.61         5.69        26.93 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB 
        7.04        20.12         0.85         2.24        15.81         4.50 
TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GD-A2C5 TCGA-GD-A3OQ TCGA-GD-A3OS 
       15.91        14.07        17.75         7.73         3.12        20.98 
TCGA-GU-A42P TCGA-GU-A42R TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH 
        6.41        11.31         6.15         5.69         7.63         7.79 
TCGA-GV-A3QI TCGA-GV-A40E TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        4.14         6.41         1.51         8.75         3.45         4.67 
TCGA-K4-A4AB TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LC-A66R 
        2.50         6.48        10.52         1.81         4.27         6.35 
TCGA-LT-A5Z6 TCGA-MV-A51V TCGA-PQ-A6FI TCGA-PQ-A6FN 
        3.45        13.48        12.23        16.67 

  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
              0.10               0.07 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
            112.44             140.81 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
             7.265              9.210 
[1] "0.1 - 112.4 (7.3)" "0.1 - 140.8 (9.2)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D62V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  11Q LOSS MUTATED         1       16        17       19
  11Q LOSS WILD-TYPE       1       49        49       39
D62V3, multiclass
           clus
vv          11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  STAGE I                  1                  1
  STAGE II                16                 49
  STAGE III               17                 49
  STAGE IV                19                 39
                    vv
clus                 T0+T1+T2 T3 T4
  11Q LOSS MUTATED         20 26  8
  11Q LOSS WILD-TYPE       39 64 20
D62V4, multiclass
          clus
vv         11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  T0+T1+T2               20                 39
  T3                     26                 64
  T4                      8                 20
                    vv
clus                 N0 N1 N2 N3
  11Q LOSS MUTATED   31  7 12  0
  11Q LOSS WILD-TYPE 89 11 21  7
D62V5, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  N0               31                 89
  N1                7                 11
  N2               12                 21
  N3                0                  7
                    vv
clus                 M0 M1 MX
  11Q LOSS MUTATED   30  2 24
  11Q LOSS WILD-TYPE 73  3 62
D62V6, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  M0               30                 73
  M1                2                  3
  MX               24                 62
D62V7, binary
                    cls
clus                   0   1
  11Q LOSS MUTATED    15  41
  11Q LOSS WILD-TYPE  33 106
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED     15   41
  11Q LOSS WILD-TYPE   33  106
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  FEMALE               15                 33
  MALE                 41                106
D62V8, continuous
D62V9, continuous
D62V10, continuous
D62V11, continuous

Clustering(63) Variable = 12P LOSS MUTATION ANALYSIS
D63V1, survival
                    sevent
clus2                  0   1
  12P LOSS MUTATED    14   4
  12P LOSS WILD-TYPE 118  52
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                18                170 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 4                 52 
$`12P LOSS MUTATED`
TCGA-BT-A2LA TCGA-C4-A0F0 TCGA-CF-A47X TCGA-CU-A3QU TCGA-DK-A1AC TCGA-DK-A3IV 
       17.16         1.94         0.10         5.19       130.88         9.67 
TCGA-E5-A2PC TCGA-FD-A3SL TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A43N TCGA-FD-A43X 
       43.59        22.45        46.78        19.79        22.98         3.62 
TCGA-FD-A5BX TCGA-FD-A5C0 TCGA-GC-A3YS TCGA-GV-A3JW TCGA-LC-A66R TCGA-PQ-A6FN 
        5.69         6.87         1.12         6.41         6.35        16.67 

$`12P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q 
       11.93        19.04        32.84        12.16        17.88        19.50 
TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X 
        5.06        14.89        14.96         5.06         8.35         8.25 
TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-BT-A42E 
        5.59         3.65         4.67        12.82         2.07         9.99 
TCGA-C4-A0EZ TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A47S 
        8.98        23.01         0.46         0.43         0.69         0.13 
TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A0YO 
        0.07         0.10         0.07         0.10        12.92         4.90 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A5 
        7.20         5.46        16.31         1.84         2.53         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE 
       31.40        18.41        19.00         8.91       112.44        16.14 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 
       17.62        15.62         1.81        10.59         7.79       123.85 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ 
       87.32         2.20         3.98         7.82         8.22        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
       50.27        21.30        20.02         8.28        10.55       140.81 
TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 
       48.00        17.98        64.18        48.53        64.64        67.36 
TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-DK-A6B6 TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3X6 
       15.68        32.28        21.24        15.35        26.17        24.66 
TCGA-E7-A3Y1 TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A5KF 
        0.10         0.49         0.53         0.59         0.56         0.66 
TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 
        1.38         0.82         1.22        12.89        15.68         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA 
        6.87         4.01        12.43        11.93        15.88        45.93 
TCGA-FD-A3SJ TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SS 
       24.30        16.47        12.82         5.52        13.18         1.97 
TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS 
       14.93        14.96        14.93        12.13        13.38        37.15 
TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C1 
       11.01         6.87         5.36         6.84        27.45        49.68 
TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 
        2.66         4.83         6.28         6.38        15.19         7.13 
TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ 
        3.48         4.08         3.25         6.48        61.94        30.61 
TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE 
        5.69        26.93        35.24        17.26         7.04        20.12 
TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC 
        0.85         2.89         2.24        15.81         4.50        15.91 
TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS 
       14.07        17.75         7.73         2.10         3.12        20.98 
TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JX 
        2.20         6.41         7.66        11.31         4.41         6.15 
TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E 
        5.69         7.63         7.79         4.14         6.67         6.41 
TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
       19.07         1.51         6.74         8.75         3.45         4.67 
TCGA-K4-A4AB TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LT-A5Z6 
        2.50         6.48        10.52         1.81         4.27         3.45 
TCGA-MV-A51V TCGA-PQ-A6FI 
       13.48        12.23 

  12P LOSS MUTATED 12P LOSS WILD-TYPE 
              0.10               0.07 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
            130.88             140.81 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             8.270              8.265 
[1] "0.1 - 130.9 (8.3)" "0.1 - 140.8 (8.3)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
[1] "hr=" "1.6"
D63V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  12P LOSS MUTATED         0        6         4        9
  12P LOSS WILD-TYPE       2       59        62       49
D63V3, multiclass
           clus
vv          12P LOSS MUTATED 12P LOSS WILD-TYPE
  STAGE I                  0                  2
  STAGE II                 6                 59
  STAGE III                4                 62
  STAGE IV                 9                 49
                    vv
clus                 T0+T1+T2 T3 T4
  12P LOSS MUTATED          7  8  3
  12P LOSS WILD-TYPE       52 82 25
D63V4, multiclass
          clus
vv         12P LOSS MUTATED 12P LOSS WILD-TYPE
  T0+T1+T2                7                 52
  T3                      8                 82
  T4                      3                 25
                    vv
clus                  N0  N1  N2  N3
  12P LOSS MUTATED     8   4   5   0
  12P LOSS WILD-TYPE 112  14  28   7
D63V5, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  N0                8                112
  N1                4                 14
  N2                5                 28
  N3                0                  7
                    vv
clus                 M0 M1 MX
  12P LOSS MUTATED    7  1 11
  12P LOSS WILD-TYPE 96  4 75
D63V6, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  M0                7                 96
  M1                1                  4
  MX               11                 75
D63V7, binary
                    cls
clus                   0   1
  12P LOSS MUTATED     2  17
  12P LOSS WILD-TYPE  46 130
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      2   17
  12P LOSS WILD-TYPE   46  130
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  FEMALE                2                 46
  MALE                 17                130
D63V8, continuous
D63V9, continuous
D63V10, continuous
D63V11, continuous

Clustering(64) Variable = 12Q LOSS MUTATION ANALYSIS
D64V1, survival
                    sevent
clus2                  0   1
  12Q LOSS MUTATED    15   6
  12Q LOSS WILD-TYPE 117  50
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                21                167 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 6                 50 
$`12Q LOSS MUTATED`
TCGA-BT-A2LD TCGA-C4-A0F0 TCGA-CF-A47X TCGA-CU-A3QU TCGA-DK-A2I6 TCGA-DK-A3IV 
        3.65         1.94         0.10         5.19        87.32         9.67 
TCGA-E5-A2PC TCGA-FD-A3SL TCGA-FD-A3SO TCGA-FD-A3SQ TCGA-FD-A3SS TCGA-FD-A43N 
       43.59        22.45         5.52        46.78         1.97        22.98 
TCGA-FD-A43X TCGA-FD-A5BX TCGA-FT-A61P TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GV-A3JW 
        3.62         5.69         6.48        14.07         1.12         6.41 
TCGA-K4-A4AC TCGA-LC-A66R TCGA-PQ-A6FN 
        6.48         6.35        16.67 

$`12Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q 
       11.93        19.04        32.84        12.16        17.88        19.50 
TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X 
        5.06        14.89        14.96         5.06         8.35         8.25 
TCGA-BT-A2LA TCGA-BT-A2LB TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-BT-A42E 
       17.16         5.59         4.67        12.82         2.07         9.99 
TCGA-C4-A0EZ TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A47S 
        8.98        23.01         0.46         0.43         0.69         0.13 
TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A0YO 
        0.07         0.10         0.07         0.10        12.92         4.90 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A5 
        7.20         5.46        16.31         1.84         2.53         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD 
       31.40        18.41        19.00         8.91       130.88       112.44 
TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 
       16.14        17.62        15.62         1.81        10.59         7.79 
TCGA-DK-A2I4 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ 
      123.85         2.20         3.98         7.82         8.22        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
       50.27        21.30        20.02         8.28        10.55       140.81 
TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 
       48.00        17.98        64.18        48.53        64.64        67.36 
TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-DK-A6B6 TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3X6 
       15.68        32.28        21.24        15.35        26.17        24.66 
TCGA-E7-A3Y1 TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A5KF 
        0.10         0.49         0.53         0.59         0.56         0.66 
TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 
        1.38         0.82         1.22        12.89        15.68         8.94 
TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA 
        6.87         4.01        12.43        11.93        15.88        45.93 
TCGA-FD-A3SJ TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SP TCGA-FD-A3SR TCGA-FD-A43P 
       24.30        16.47        12.82        13.18        19.79        14.93 
TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT 
       14.96        14.93        12.13        13.38        37.15        11.01 
TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A5C1 
        6.87         5.36         6.84        27.45         6.87        49.68 
TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 
        2.66         4.83         6.28         6.38        15.19         7.13 
TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK 
        3.48         4.08         3.25        61.94        30.61         5.69 
TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY 
       26.93        35.24        17.26         7.04        20.12         0.85 
TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3WC 
        2.89         2.24        15.81         4.50        15.91        17.75 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42P 
        7.73         2.10         3.12        20.98         2.20         6.41 
TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF 
        7.66        11.31         4.41         6.15         5.69         7.63 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO 
        7.79         4.14         6.67         6.41        19.07         1.51 
TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A54R 
        6.74         8.75         3.45         4.67         2.50        10.52 
TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LT-A5Z6 TCGA-MV-A51V TCGA-PQ-A6FI 
        1.81         4.27         3.45        13.48        12.23 

  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              0.10               0.07 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
             87.32             140.81 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              6.41               8.75 
[1] "0.1 - 87.3 (6.4)"  "0.1 - 140.8 (8.8)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
[1] "hr=" "1"  
D64V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  12Q LOSS MUTATED         0        7         3       12
  12Q LOSS WILD-TYPE       2       58        63       46
D64V3, multiclass
           clus
vv          12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  STAGE I                  0                  2
  STAGE II                 7                 58
  STAGE III                3                 63
  STAGE IV                12                 46
                    vv
clus                 T0+T1+T2 T3 T4
  12Q LOSS MUTATED          9  9  3
  12Q LOSS WILD-TYPE       50 81 25
D64V4, multiclass
          clus
vv         12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  T0+T1+T2                9                 50
  T3                      9                 81
  T4                      3                 25
                    vv
clus                  N0  N1  N2  N3
  12Q LOSS MUTATED     8   7   4   1
  12Q LOSS WILD-TYPE 112  11  29   6
D64V5, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  N0                8                112
  N1                7                 11
  N2                4                 29
  N3                1                  6
                    vv
clus                 M0 M1 MX
  12Q LOSS MUTATED    8  1 13
  12Q LOSS WILD-TYPE 95  4 73
D64V6, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  M0                8                 95
  M1                1                  4
  MX               13                 73
D64V7, binary
                    cls
clus                   0   1
  12Q LOSS MUTATED     4  18
  12Q LOSS WILD-TYPE  44 129
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      4   18
  12Q LOSS WILD-TYPE   44  129
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  FEMALE                4                 44
  MALE                 18                129
D64V8, continuous
D64V9, continuous
D64V10, continuous
D64V11, continuous

Clustering(65) Variable = 13Q LOSS MUTATION ANALYSIS
D65V1, survival
                    sevent
clus2                  0   1
  13Q LOSS MUTATED    27  15
  13Q LOSS WILD-TYPE 105  41
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                42                146 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                15                 41 
$`13Q LOSS MUTATED`
TCGA-BL-A13J TCGA-BT-A20N TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A2LA 
        2.66        32.84        14.89         5.06         8.25        17.16 
TCGA-BT-A3PH TCGA-BT-A42E TCGA-C4-A0F0 TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A5 
        4.67         9.99         1.94         1.84         2.53         2.14 
TCGA-DK-A1AC TCGA-DK-A2I2 TCGA-DK-A2I6 TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A6B6 
      130.88         7.79        87.32         7.82         8.22        21.24 
TCGA-E7-A3X6 TCGA-E7-A4IJ TCGA-E7-A5KE TCGA-E7-A7DV TCGA-FD-A3B5 TCGA-FD-A3B7 
       24.66         0.49         0.56         1.22         8.94         4.01 
TCGA-FD-A3SJ TCGA-FD-A3SN TCGA-FD-A43P TCGA-FD-A5BV TCGA-FD-A5C1 TCGA-FD-A62N 
       24.30        12.82        14.93         5.36        49.68         2.66 
TCGA-FJ-A3ZF TCGA-G2-A2EO TCGA-G2-A2ES TCGA-GC-A3BM TCGA-GC-A3YS TCGA-GD-A6C6 
        4.08        35.24        17.26         2.89         1.12         2.20 
TCGA-GU-A42Q TCGA-GV-A3JW TCGA-GV-A3QI TCGA-K4-A3WV TCGA-K4-A4AC TCGA-K4-A6FZ 
        7.66         6.41         4.14         4.67         6.48         1.81 

$`13Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 TCGA-BT-A0YX 
       40.08         7.33         6.74        12.39         6.58        11.93 
TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20U 
       19.04        12.16        17.88        19.50         5.06        14.96 
TCGA-BT-A20W TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-C4-A0EZ 
        8.35         5.59         3.65        12.82         2.07         8.98 
TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T 
       23.01         0.46         0.43         0.69         0.13         0.07 
TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A0YO 
        0.10         0.07         0.10         0.10        12.92         4.90 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A6 TCGA-DK-A1A7 
        7.20         5.46         5.19        16.31        31.40        18.41 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
       19.00         8.91       112.44        16.14        17.62        15.62 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I4 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IQ 
        1.81        10.59       123.85         2.20         3.98        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX 
       50.27        21.30        20.02         9.67         8.28        10.55 
TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 
      140.81        48.00        17.98        64.18        48.53        64.64 
TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E5-A4U1 
       67.36        15.68        32.28        43.59        15.35        26.17 
TCGA-E7-A3Y1 TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 
        0.10         0.53         0.59         0.66         1.38         0.82 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B6 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
       12.89        15.68         6.87        12.43        11.93        15.88 
TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ 
       45.93        22.45        16.47         5.52        13.18        46.78 
TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43X 
       19.79         1.97        22.98        14.96        14.93         3.62 
TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BX 
       12.13        13.38        37.15        11.01         6.87         5.69 
TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S 
        6.84        27.45         6.87         4.83         6.28         6.38 
TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EF 
       15.19         7.13         3.48         3.25         6.48        61.94 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY 
       30.61         5.69        26.93         7.04        20.12         0.85 
TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC 
        2.24        15.81         4.50        15.91        14.07        17.75 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42R 
        7.73         2.10         3.12        20.98         6.41        11.31 
TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QK 
        4.41         6.15         5.69         7.63         7.79         6.67 
TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        6.41        19.07         1.51         6.74         8.75         3.45 
TCGA-K4-A4AB TCGA-K4-A54R TCGA-K4-A6MB TCGA-LC-A66R TCGA-LT-A5Z6 TCGA-MV-A51V 
        2.50        10.52         4.27         6.35         3.45        13.48 
TCGA-PQ-A6FI TCGA-PQ-A6FN 
       12.23        16.67 

  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
              0.49               0.07 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
            130.88             140.81 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
             6.445             10.080 
[1] "0.5 - 130.9 (6.4)"  "0.1 - 140.8 (10.1)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D65V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  13Q LOSS MUTATED         0       12        17       13
  13Q LOSS WILD-TYPE       2       53        49       45
D65V3, multiclass
           clus
vv          13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  STAGE I                  0                  2
  STAGE II                12                 53
  STAGE III               17                 49
  STAGE IV                13                 45
                    vv
clus                 T0+T1+T2 T3 T4
  13Q LOSS MUTATED         14 21  6
  13Q LOSS WILD-TYPE       45 69 22
D65V4, multiclass
          clus
vv         13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  T0+T1+T2               14                 45
  T3                     21                 69
  T4                      6                 22
                    vv
clus                 N0 N1 N2 N3
  13Q LOSS MUTATED   26  4  7  2
  13Q LOSS WILD-TYPE 94 14 26  5
D65V5, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  N0               26                 94
  N1                4                 14
  N2                7                 26
  N3                2                  5
                    vv
clus                 M0 M1 MX
  13Q LOSS MUTATED   23  0 20
  13Q LOSS WILD-TYPE 80  5 66
D65V6, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  M0               23                 80
  M1                0                  5
  MX               20                 66
D65V7, binary
                    cls
clus                   0   1
  13Q LOSS MUTATED     7  36
  13Q LOSS WILD-TYPE  41 111
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED      7   36
  13Q LOSS WILD-TYPE   41  111
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  FEMALE                7                 41
  MALE                 36                111
D65V8, continuous
D65V9, continuous
D65V10, continuous
D65V11, continuous

Clustering(66) Variable = 14Q LOSS MUTATION ANALYSIS
D66V1, survival
                    sevent
clus2                 0  1
  14Q LOSS MUTATED   36 15
  14Q LOSS WILD-TYPE 96 41
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                51                137 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                15                 41 
$`14Q LOSS MUTATED`
TCGA-BT-A20J TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A2LB TCGA-BT-A3PK TCGA-CF-A1HR 
       19.04        14.89         5.06         5.59         2.07         0.46 
TCGA-CF-A1HS TCGA-CF-A47X TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A5W6 TCGA-DK-A1A3 
        0.43         0.10         4.90         7.20         1.84         2.53 
TCGA-DK-A1A5 TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IQ 
        2.14       130.88       112.44        10.59        87.32        10.49 
TCGA-DK-A3IS TCGA-DK-A3X1 TCGA-DK-A6AV TCGA-DK-A6B5 TCGA-E5-A4TZ TCGA-E5-A4U1 
       50.27        48.00        64.18        32.28        15.35        26.17 
TCGA-E7-A4IJ TCGA-E7-A7DV TCGA-FD-A3SN TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A43N 
        0.49         1.22        12.82        13.18        46.78        22.98 
TCGA-FD-A43U TCGA-FD-A5C0 TCGA-FD-A5C1 TCGA-FD-A62P TCGA-FJ-A3Z7 TCGA-FJ-A3ZF 
       14.93         6.87        49.68         6.28        15.19         4.08 
TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3RB TCGA-GC-A3RD 
        6.48        61.94        20.12         0.85         4.50        14.07 
TCGA-GU-A42Q TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HQ 
        7.66         5.69         7.63         6.41        19.07         6.74 
TCGA-K4-A3WU TCGA-K4-A6MB TCGA-PQ-A6FI 
        3.45         4.27        12.23 

$`14Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R 
       11.93        32.84        12.16        17.88        19.50         5.06 
TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LD TCGA-BT-A3PH 
       14.96         8.35         8.25        17.16         3.65         4.67 
TCGA-BT-A3PJ TCGA-BT-A42E TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A27C 
       12.82         9.99         8.98         1.94        23.01         0.69 
TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47Y TCGA-CU-A0YN 
        0.13         0.07         0.10         0.07         0.10        12.92 
TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
        5.46         5.19        16.31        31.40        18.41        19.00 
TCGA-DK-A1AB TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I2 
        8.91        16.14        17.62        15.62         1.81         7.79 
TCGA-DK-A2I4 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IT 
      123.85         2.20         3.98         7.82         8.22        21.30 
TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X2 
       20.02         9.67         8.28        10.55       140.81        17.98 
TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-DK-A6B6 TCGA-E5-A2PC 
       48.53        64.64        67.36        15.68        21.24        43.59 
TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A5KF 
       24.66         0.10         0.53         0.59         0.56         0.66 
TCGA-E7-A677 TCGA-E7-A678 TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
        1.38         0.82        12.89        15.68         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ 
        4.01        12.43        11.93        15.88        45.93        24.30 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SO TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43P 
       22.45        16.47         5.52        19.79         1.97        14.93 
TCGA-FD-A43S TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT 
       14.96         3.62        12.13        13.38        37.15        11.01 
TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A62N 
        6.87         5.36         5.69         6.84        27.45         2.66 
TCGA-FD-A62O TCGA-FD-A62S TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FT-A3EE TCGA-G2-A2EJ 
        4.83         6.38         7.13         3.48         3.25        30.61 
TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-GC-A3BM 
        5.69        26.93        35.24        17.26         7.04         2.89 
TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RC TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 
        2.24        15.81        15.91        17.75         1.12         7.73 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GU-A42R 
        2.10         3.12        20.98         2.20         6.41        11.31 
TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK 
        4.41         6.41         6.15         7.79         4.14         6.67 
TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A4AC TCGA-K4-A54R 
        1.51         8.75         4.67         2.50         6.48        10.52 
TCGA-K4-A6FZ TCGA-LC-A66R TCGA-LT-A5Z6 TCGA-MV-A51V TCGA-PQ-A6FN 
        1.81         6.35         3.45        13.48        16.67 

  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
              0.10               0.07 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
            130.88             140.81 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
              7.66               8.28 
[1] "0.1 - 130.9 (7.7)" "0.1 - 140.8 (8.3)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D66V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  14Q LOSS MUTATED         0       17        13       20
  14Q LOSS WILD-TYPE       2       48        53       38
D66V3, multiclass
           clus
vv          14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  STAGE I                  0                  2
  STAGE II                17                 48
  STAGE III               13                 53
  STAGE IV                20                 38
                    vv
clus                 T0+T1+T2 T3 T4
  14Q LOSS MUTATED         16 22  9
  14Q LOSS WILD-TYPE       43 68 19
D66V4, multiclass
          clus
vv         14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  T0+T1+T2               16                 43
  T3                     22                 68
  T4                      9                 19
                    vv
clus                 N0 N1 N2 N3
  14Q LOSS MUTATED   29  3 14  2
  14Q LOSS WILD-TYPE 91 15 19  5
D66V5, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  N0               29                 91
  N1                3                 15
  N2               14                 19
  N3                2                  5
                    vv
clus                 M0 M1 MX
  14Q LOSS MUTATED   27  1 24
  14Q LOSS WILD-TYPE 76  4 62
D66V6, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  M0               27                 76
  M1                1                  4
  MX               24                 62
D66V7, binary
                    cls
clus                   0   1
  14Q LOSS MUTATED     9  44
  14Q LOSS WILD-TYPE  39 103
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      9   44
  14Q LOSS WILD-TYPE   39  103
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  FEMALE                9                 39
  MALE                 44                103
D66V8, continuous
D66V9, continuous
D66V10, continuous
D66V11, continuous

Clustering(67) Variable = 15Q LOSS MUTATION ANALYSIS
D67V1, survival
                    sevent
clus2                 0  1
  15Q LOSS MUTATED   44 18
  15Q LOSS WILD-TYPE 88 38
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                62                126 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                18                 38 
$`15Q LOSS MUTATED`
TCGA-BL-A0C8 TCGA-BT-A0S7 TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20W TCGA-BT-A20X 
       40.08         6.58        19.04        32.84         8.35         8.25 
TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A42E TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-CF-A1HS 
        5.59         3.65         9.99         8.98         1.94         0.43 
TCGA-CF-A47X TCGA-CU-A3KJ TCGA-DK-A1A7 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 
        0.10         5.46        18.41         7.79       123.85        87.32 
TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-E5-A2PC TCGA-E7-A4IJ 
        7.82         8.22        15.68        32.28        43.59         0.49 
TCGA-E7-A541 TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3NA TCGA-FD-A3SN TCGA-FD-A3SP 
        0.59         1.22        12.89        45.93        12.82        13.18 
TCGA-FD-A43N TCGA-FD-A5BV TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A5C1 
       22.98         5.36         6.84        27.45         6.87        49.68 
TCGA-FD-A62N TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3ZF TCGA-FT-A61P TCGA-G2-A2EF 
        2.66         6.38        15.19         4.08         6.48        61.94 
TCGA-G2-A2EL TCGA-G2-A3IE TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3YS TCGA-GD-A3OP 
       26.93        20.12        15.81         4.50         1.12         2.10 
TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GV-A3JX TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A40E 
        2.20         6.41         6.15         7.63         7.79         6.41 
TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A4AB TCGA-LC-A66R TCGA-LT-A5Z6 
       19.07         6.74         8.75         2.50         6.35         3.45 
TCGA-MV-A51V TCGA-PQ-A6FN 
       13.48        16.67 

$`15Q LOSS WILD-TYPE`
TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0YX TCGA-BT-A20O 
        7.33         2.66         6.74        12.39        11.93        12.16 
TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V 
       17.88        19.50         5.06        14.89        14.96         5.06 
TCGA-BT-A2LA TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-C4-A0F6 TCGA-CF-A1HR 
       17.16         4.67        12.82         2.07        23.01         0.46 
TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47Y 
        0.69         0.13         0.07         0.10         0.07         0.10 
TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 
       12.92         4.90         7.20         5.19        16.31         1.84 
TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC 
        2.53         2.14        31.40        19.00         8.91       130.88 
TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 
      112.44        16.14        17.62        15.62         1.81        10.59 
TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU 
        2.20         3.98        10.49        50.27        21.30        20.02 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 
        9.67         8.28        10.55       140.81        48.00        17.98 
TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B6 TCGA-E5-A4TZ 
       64.18        48.53        64.64        67.36        21.24        15.35 
TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4XJ TCGA-E7-A5KE TCGA-E7-A5KF 
       26.17        24.66         0.10         0.53         0.56         0.66 
TCGA-E7-A677 TCGA-E7-A678 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 
        1.38         0.82        15.68         8.94         6.87         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM 
       12.43        11.93        15.88        24.30        22.45        16.47 
TCGA-FD-A3SO TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43P TCGA-FD-A43S 
        5.52        46.78        19.79         1.97        14.93        14.96 
TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT 
       14.93         3.62        12.13        13.38        37.15        11.01 
TCGA-FD-A5BU TCGA-FD-A5BX TCGA-FD-A62O TCGA-FD-A62P TCGA-FJ-A3Z9 TCGA-FJ-A3ZE 
        6.87         5.69         4.83         6.28         7.13         3.48 
TCGA-FT-A3EE TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB 
        3.25        30.61         5.69        35.24        17.26         7.04 
TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC 
        0.85         2.89         2.24        15.91        14.07        17.75 
TCGA-GD-A2C5 TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV 
        7.73         3.12        20.98         7.66        11.31         4.41 
TCGA-GV-A3JW TCGA-GV-A3JZ TCGA-GV-A3QI TCGA-GV-A3QK TCGA-H4-A2HO TCGA-K4-A3WU 
        6.41         5.69         4.14         6.67         1.51         3.45 
TCGA-K4-A3WV TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-PQ-A6FI 
        4.67         6.48        10.52         1.81         4.27        12.23 

  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
              0.10               0.07 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
            123.85             140.81 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             7.805              9.305 
[1] "0.1 - 123.8 (7.8)" "0.1 - 140.8 (9.3)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
[1] "hr=" "1.1"
D67V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  15Q LOSS MUTATED         1       15        24       21
  15Q LOSS WILD-TYPE       1       50        42       37
D67V3, multiclass
           clus
vv          15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  STAGE I                  1                  1
  STAGE II                15                 50
  STAGE III               24                 42
  STAGE IV                21                 37
                    vv
clus                 T0+T1+T2 T3 T4
  15Q LOSS MUTATED         13 33  9
  15Q LOSS WILD-TYPE       46 57 19
D67V4, multiclass
          clus
vv         15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  T0+T1+T2               13                 46
  T3                     33                 57
  T4                      9                 19
                    vv
clus                 N0 N1 N2 N3
  15Q LOSS MUTATED   36  8 10  2
  15Q LOSS WILD-TYPE 84 10 23  5
D67V5, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  N0               36                 84
  N1                8                 10
  N2               10                 23
  N3                2                  5
                    vv
clus                 M0 M1 MX
  15Q LOSS MUTATED   26  2 35
  15Q LOSS WILD-TYPE 77  3 51
D67V6, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  M0               26                 77
  M1                2                  3
  MX               35                 51
D67V7, binary
                    cls
clus                   0   1
  15Q LOSS MUTATED    16  47
  15Q LOSS WILD-TYPE  32 100
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED     16   47
  15Q LOSS WILD-TYPE   32  100
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  FEMALE               16                 32
  MALE                 47                100
D67V8, continuous
D67V9, continuous
D67V10, continuous
D67V11, continuous

Clustering(68) Variable = 16P LOSS MUTATION ANALYSIS
D68V1, survival
                    sevent
clus2                 0  1
  16P LOSS MUTATED   39 12
  16P LOSS WILD-TYPE 93 44
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                51                137 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                12                 44 
$`16P LOSS MUTATED`
TCGA-BT-A20N TCGA-BT-A20R TCGA-BT-A3PJ TCGA-BT-A42E TCGA-CF-A1HS TCGA-CU-A0YN 
       32.84         5.06        12.82         9.99         0.43        12.92 
TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1AC TCGA-DK-A2HX 
        5.46         5.19         1.84         2.53       130.88         1.81 
TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IT TCGA-DK-A3WX TCGA-DK-A3X2 TCGA-DK-A6B1 
      123.85        87.32        21.30        10.55        17.98        67.36 
TCGA-DK-A6B6 TCGA-E7-A541 TCGA-FD-A3B3 TCGA-FD-A3B6 TCGA-FD-A3SO TCGA-FD-A3SP 
       21.24         0.59        12.89         6.87         5.52        13.18 
TCGA-FD-A43N TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BV TCGA-FD-A5BZ TCGA-FD-A62N 
       22.98        12.13        13.38         5.36        27.45         2.66 
TCGA-FD-A62O TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-G2-A2EF TCGA-G2-A3IE TCGA-GC-A3RC 
        4.83         6.38        15.19        61.94        20.12        15.91 
TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A6C6 TCGA-GU-A42P 
       14.07         1.12         7.73         2.10         2.20         6.41 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6FZ 
        6.15         5.69         7.79         6.48        10.52         1.81 
TCGA-LT-A5Z6 TCGA-MV-A51V TCGA-PQ-A6FI 
        3.45        13.48        12.23 

$`16P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T 
       11.93        19.04        12.16        17.88        19.50        14.89 
TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LB 
       14.96         5.06         8.35         8.25        17.16         5.59 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PK TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 
        3.65         4.67         2.07         8.98         1.94        23.01 
TCGA-CF-A1HR TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W 
        0.46         0.69         0.13         0.07         0.10         0.07 
TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3YL TCGA-DK-A1A5 
        0.10         0.10         4.90         7.20        16.31         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE 
       31.40        18.41        19.00         8.91       112.44        16.14 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A3IK TCGA-DK-A3IL 
       17.62        15.62        10.59         7.79         2.20         3.98 
TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IU TCGA-DK-A3IV 
        7.82         8.22        10.49        50.27        20.02         9.67 
TCGA-DK-A3WW TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 
        8.28       140.81        48.00        64.18        48.53        64.64 
TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3X6 
       15.68        32.28        43.59        15.35        26.17        24.66 
TCGA-E7-A3Y1 TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 
        0.10         0.49         0.53         0.56         0.66         1.38 
TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B7 TCGA-FD-A3B8 
        0.82         1.22        15.68         8.94         4.01        12.43 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM 
       11.93        15.88        45.93        24.30        22.45        16.47 
TCGA-FD-A3SN TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43P TCGA-FD-A43S 
       12.82        46.78        19.79         1.97        14.93        14.96 
TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BX 
       14.93         3.62        37.15        11.01         6.87         5.69 
TCGA-FD-A5BY TCGA-FD-A5C0 TCGA-FD-A5C1 TCGA-FD-A62P TCGA-FJ-A3Z9 TCGA-FJ-A3ZE 
        6.84         6.87        49.68         6.28         7.13         3.48 
TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        4.08         3.25         6.48        30.61         5.69        26.93 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 
       35.24        17.26         7.04         0.85         2.89         2.24 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3WC TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42Q 
       15.81         4.50        17.75         3.12        20.98         7.66 
TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3QF TCGA-GV-A3QI TCGA-GV-A3QK 
       11.31         4.41         6.41         7.63         4.14         6.67 
TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU 
        6.41        19.07         1.51         6.74         8.75         3.45 
TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A6MB TCGA-LC-A66R TCGA-PQ-A6FN 
        4.67         2.50         4.27         6.35        16.67 

  16P LOSS MUTATED 16P LOSS WILD-TYPE 
              0.43               0.07 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
            130.88             140.81 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
              9.99               8.25 
[1] "0.4 - 130.9 (10.0)" "0.1 - 140.8 (8.2)" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D68V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  16P LOSS MUTATED         0       13        23       14
  16P LOSS WILD-TYPE       2       52        43       44
D68V3, multiclass
           clus
vv          16P LOSS MUTATED 16P LOSS WILD-TYPE
  STAGE I                  0                  2
  STAGE II                13                 52
  STAGE III               23                 43
  STAGE IV                14                 44
                    vv
clus                 T0+T1+T2 T3 T4
  16P LOSS MUTATED         11 31  5
  16P LOSS WILD-TYPE       48 59 23
D68V4, multiclass
          clus
vv         16P LOSS MUTATED 16P LOSS WILD-TYPE
  T0+T1+T2               11                 48
  T3                     31                 59
  T4                      5                 23
                    vv
clus                 N0 N1 N2 N3
  16P LOSS MUTATED   31  7  8  2
  16P LOSS WILD-TYPE 89 11 25  5
D68V5, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  N0               31                 89
  N1                7                 11
  N2                8                 25
  N3                2                  5
                    vv
clus                 M0 M1 MX
  16P LOSS MUTATED   22  0 30
  16P LOSS WILD-TYPE 81  5 56
D68V6, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  M0               22                 81
  M1                0                  5
  MX               30                 56
D68V7, binary
                    cls
clus                   0   1
  16P LOSS MUTATED    12  40
  16P LOSS WILD-TYPE  36 107
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED     12   40
  16P LOSS WILD-TYPE   36  107
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  FEMALE               12                 36
  MALE                 40                107
D68V8, continuous
D68V9, continuous
D68V10, continuous
D68V11, continuous

Clustering(69) Variable = 16Q LOSS MUTATION ANALYSIS
D69V1, survival
                    sevent
clus2                 0  1
  16Q LOSS MUTATED   34 13
  16Q LOSS WILD-TYPE 98 43
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                47                141 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                13                 43 
$`16Q LOSS MUTATED`
TCGA-BT-A42E TCGA-CF-A1HS TCGA-CU-A0YN TCGA-CU-A3QU TCGA-CU-A5W6 TCGA-DK-A1A3 
        9.99         0.43        12.92         5.19         1.84         2.53 
TCGA-DK-A1AC TCGA-DK-A2HX TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IT TCGA-DK-A3IV 
      130.88         1.81       123.85        87.32        21.30         9.67 
TCGA-DK-A3X2 TCGA-DK-A6B1 TCGA-DK-A6B6 TCGA-E5-A4TZ TCGA-E7-A4IJ TCGA-E7-A541 
       17.98        67.36        21.24        15.35         0.49         0.59 
TCGA-FD-A3SO TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FD-A43Y TCGA-FD-A5BR 
        5.52         1.97        22.98        14.93        12.13        13.38 
TCGA-FD-A5BV TCGA-FD-A5BZ TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62S TCGA-FJ-A3Z7 
        5.36        27.45         2.66         4.83         6.38        15.19 
TCGA-FT-A61P TCGA-G2-A3IE TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GD-A3OP TCGA-GD-A6C6 
        6.48        20.12        15.91        14.07         2.10         2.20 
TCGA-GU-A42P TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-K4-A3WV 
        6.41         4.41         6.15         5.69         7.79         4.67 
TCGA-K4-A4AC TCGA-K4-A6FZ TCGA-LT-A5Z6 TCGA-MV-A51V TCGA-PQ-A6FI 
        6.48         1.81         3.45        13.48        12.23 

$`16Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q 
       11.93        19.04        32.84        12.16        17.88        19.50 
TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X 
        5.06        14.89        14.96         5.06         8.35         8.25 
TCGA-BT-A2LA TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK 
       17.16         5.59         3.65         4.67        12.82         2.07 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A27C TCGA-CF-A47S 
        8.98         1.94        23.01         0.46         0.69         0.13 
TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YO 
        0.07         0.10         0.07         0.10         0.10         4.90 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 
        7.20         5.46        16.31         2.14        31.40        18.41 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
       19.00         8.91       112.44        16.14        17.62        15.62 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN 
       10.59         7.79         2.20         3.98         7.82         8.22 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
       10.49        50.27        20.02         8.28        10.55       140.81 
TCGA-DK-A3X1 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B2 TCGA-DK-A6B5 
       48.00        64.18        48.53        64.64        15.68        32.28 
TCGA-E5-A2PC TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4XJ TCGA-E7-A5KE 
       43.59        26.17        24.66         0.10         0.53         0.56 
TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 
        0.66         1.38         0.82         1.22        12.89        15.68 
TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
        8.94         6.87         4.01        12.43        11.93        15.88 
TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SP 
       45.93        24.30        22.45        16.47        12.82        13.18 
TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43X TCGA-FD-A5BS 
       46.78        19.79        14.93        14.96         3.62        37.15 
TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5C0 TCGA-FD-A5C1 
       11.01         6.87         5.69         6.84         6.87        49.68 
TCGA-FD-A62P TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EF 
        6.28         7.13         3.48         4.08         3.25        61.94 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB 
       30.61         5.69        26.93        35.24        17.26         7.04 
TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3WC 
        0.85         2.89         2.24        15.81         4.50        17.75 
TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42Q TCGA-GU-A42R 
        1.12         7.73         3.12        20.98         7.66        11.31 
TCGA-GV-A3JW TCGA-GV-A3QF TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G 
        6.41         7.63         4.14         6.67         6.41        19.07 
TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A4AB TCGA-K4-A54R 
        1.51         6.74         8.75         3.45         2.50        10.52 
TCGA-K4-A6MB TCGA-LC-A66R TCGA-PQ-A6FN 
        4.27         6.35        16.67 

  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
              0.43               0.07 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
            130.88             140.81 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
              6.48               8.35 
[1] "0.4 - 130.9 (6.5)" "0.1 - 140.8 (8.3)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D69V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  16Q LOSS MUTATED         0       13        17       16
  16Q LOSS WILD-TYPE       2       52        49       42
D69V3, multiclass
           clus
vv          16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  STAGE I                  0                  2
  STAGE II                13                 52
  STAGE III               17                 49
  STAGE IV                16                 42
                    vv
clus                 T0+T1+T2 T3 T4
  16Q LOSS MUTATED         11 24  8
  16Q LOSS WILD-TYPE       48 66 20
D69V4, multiclass
          clus
vv         16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  T0+T1+T2               11                 48
  T3                     24                 66
  T4                      8                 20
                    vv
clus                 N0 N1 N2 N3
  16Q LOSS MUTATED   24  6 10  2
  16Q LOSS WILD-TYPE 96 12 23  5
D69V5, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  N0               24                 96
  N1                6                 12
  N2               10                 23
  N3                2                  5
                    vv
clus                 M0 M1 MX
  16Q LOSS MUTATED   19  0 29
  16Q LOSS WILD-TYPE 84  5 57
D69V6, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  M0               19                 84
  M1                0                  5
  MX               29                 57
D69V7, binary
                    cls
clus                   0   1
  16Q LOSS MUTATED     9  39
  16Q LOSS WILD-TYPE  39 108
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      9   39
  16Q LOSS WILD-TYPE   39  108
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  FEMALE                9                 39
  MALE                 39                108
D69V8, continuous
D69V9, continuous
D69V10, continuous
D69V11, continuous

Clustering(70) Variable = 17P LOSS MUTATION ANALYSIS
D70V1, survival
                    sevent
clus2                 0  1
  17P LOSS MUTATED   54 26
  17P LOSS WILD-TYPE 78 30
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                80                108 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                26                 30 
$`17P LOSS MUTATED`
TCGA-BL-A5ZZ TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T 
       12.39        19.04        32.84        17.88        19.50        14.89 
TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LB TCGA-BT-A3PH TCGA-BT-A3PK TCGA-BT-A42E 
        8.25        17.16         5.59         4.67         2.07         9.99 
TCGA-C4-A0F0 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A47X TCGA-CU-A3KJ 
        1.94         0.46         0.43         0.69         0.10         5.46 
TCGA-CU-A5W6 TCGA-DK-A1AB TCGA-DK-A1AD TCGA-DK-A2HX TCGA-DK-A2I6 TCGA-DK-A3IL 
        1.84         8.91       112.44         1.81        87.32         3.98 
TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV TCGA-DK-A3X1 
        8.22        10.49        50.27        21.30         9.67        48.00 
TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6B5 TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E5-A4U1 
       17.98        64.18        32.28        43.59        15.35        26.17 
TCGA-E7-A4IJ TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A677 TCGA-FD-A3B4 TCGA-FD-A3B5 
        0.49         0.59         0.56         1.38        15.68         8.94 
TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SQ TCGA-FD-A3SS 
       45.93        24.30        12.82         5.52        46.78         1.97 
TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A5BR TCGA-FD-A5BV 
       22.98        14.93        14.93         3.62        13.38         5.36 
TCGA-FD-A5BY TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3ZE TCGA-G2-A2EF 
        6.84         4.83         6.28         6.38         3.48        61.94 
TCGA-G2-A2EJ TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY 
       30.61        26.93        35.24         7.04        20.12         0.85 
TCGA-GC-A3BM TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GD-A3OP TCGA-GD-A6C6 TCGA-GU-A42Q 
        2.89        14.07         1.12         2.10         2.20         7.66 
TCGA-GU-A42R TCGA-GV-A3JW TCGA-GV-A3QF TCGA-H4-A2HQ TCGA-K4-A4AC TCGA-K4-A6MB 
       11.31         6.41         7.63         6.74         6.48         4.27 
TCGA-PQ-A6FI TCGA-PQ-A6FN 
       12.23        16.67 

$`17P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BT-A0S7 TCGA-BT-A0YX 
       40.08         7.33         2.66         6.74         6.58        11.93 
TCGA-BT-A20O TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A2LD 
       12.16         5.06        14.96         5.06         8.35         3.65 
TCGA-BT-A3PJ TCGA-C4-A0EZ TCGA-C4-A0F6 TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V 
       12.82         8.98        23.01         0.13         0.07         0.10 
TCGA-CF-A47W TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3QU 
        0.07         0.10        12.92         4.90         7.20         5.19 
TCGA-CU-A3YL TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
       16.31         2.53         2.14        31.40        18.41        19.00 
TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I1 TCGA-DK-A2I2 
      130.88        16.14        17.62        15.62        10.59         7.79 
TCGA-DK-A2I4 TCGA-DK-A3IK TCGA-DK-A3IM TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WX 
      123.85         2.20         7.82        20.02         8.28        10.55 
TCGA-DK-A3WY TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-DK-A6B6 
      140.81        48.53        64.64        67.36        15.68        21.24 
TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4XJ TCGA-E7-A5KF TCGA-E7-A678 TCGA-E7-A7DV 
       24.66         0.10         0.53         0.66         0.82         1.22 
TCGA-FD-A3B3 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
       12.89         6.87         4.01        12.43        11.93        15.88 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SP TCGA-FD-A3SR TCGA-FD-A43S TCGA-FD-A43Y 
       22.45        16.47        13.18        19.79        14.96        12.13 
TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BX TCGA-FD-A5BZ TCGA-FD-A5C0 
       37.15        11.01         6.87         5.69        27.45         6.87 
TCGA-FD-A5C1 TCGA-FD-A62N TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZF TCGA-FT-A3EE 
       49.68         2.66        15.19         7.13         4.08         3.25 
TCGA-FT-A61P TCGA-G2-A2EK TCGA-G2-A2ES TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB 
        6.48         5.69        17.26         2.24        15.81         4.50 
TCGA-GC-A3RC TCGA-GC-A3WC TCGA-GD-A2C5 TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P 
       15.91        17.75         7.73         3.12        20.98         6.41 
TCGA-GV-A3JV TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK 
        4.41         6.15         5.69         7.79         4.14         6.67 
TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
        6.41        19.07         1.51         8.75         3.45         4.67 
TCGA-K4-A4AB TCGA-K4-A54R TCGA-K4-A6FZ TCGA-LC-A66R TCGA-LT-A5Z6 TCGA-MV-A51V 
        2.50        10.52         1.81         6.35         3.45        13.48 

  17P LOSS MUTATED 17P LOSS WILD-TYPE 
              0.10               0.07 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
            112.44             140.81 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
             8.925              7.805 
[1] "0.1 - 112.4 (8.9)" "0.1 - 140.8 (7.8)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" 
[1] "hr=" "1.1"
D70V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  17P LOSS MUTATED         0       30        23       26
  17P LOSS WILD-TYPE       2       35        43       32
D70V3, multiclass
           clus
vv          17P LOSS MUTATED 17P LOSS WILD-TYPE
  STAGE I                  0                  2
  STAGE II                30                 35
  STAGE III               23                 43
  STAGE IV                26                 32
                    vv
clus                 T0+T1+T2 T3 T4
  17P LOSS MUTATED         26 35 11
  17P LOSS WILD-TYPE       33 55 17
D70V4, multiclass
          clus
vv         17P LOSS MUTATED 17P LOSS WILD-TYPE
  T0+T1+T2               26                 33
  T3                     35                 55
  T4                     11                 17
                    vv
clus                 N0 N1 N2 N3
  17P LOSS MUTATED   49  7 15  2
  17P LOSS WILD-TYPE 71 11 18  5
D70V5, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  N0               49                 71
  N1                7                 11
  N2               15                 18
  N3                2                  5
                    vv
clus                 M0 M1 MX
  17P LOSS MUTATED   41  2 38
  17P LOSS WILD-TYPE 62  3 48
D70V6, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  M0               41                 62
  M1                2                  3
  MX               38                 48
D70V7, binary
                    cls
clus                  0  1
  17P LOSS MUTATED   20 62
  17P LOSS WILD-TYPE 28 85
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     20   62
  17P LOSS WILD-TYPE   28   85
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  FEMALE               20                 28
  MALE                 62                 85
D70V8, continuous
D70V9, continuous
D70V10, continuous
D70V11, continuous

Clustering(71) Variable = 17Q LOSS MUTATION ANALYSIS
D71V1, survival
                    sevent
clus2                  0   1
  17Q LOSS MUTATED    19   5
  17Q LOSS WILD-TYPE 113  51
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                24                164 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 5                 51 
$`17Q LOSS MUTATED`
TCGA-BT-A20P TCGA-BT-A2LA TCGA-CF-A1HR TCGA-CF-A1HS TCGA-DK-A1AB TCGA-DK-A3IN 
       17.88        17.16         0.46         0.43         8.91         8.22 
TCGA-DK-A6AV TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-FD-A3NA TCGA-FD-A3SS TCGA-FD-A43N 
       64.18        15.35        26.17        45.93         1.97        22.98 
TCGA-FD-A43P TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A62S TCGA-FJ-A3ZE TCGA-G2-A3IB 
       14.93        14.93         3.62         6.38         3.48         7.04 
TCGA-G2-A3IE TCGA-GC-A3YS TCGA-GD-A3OP TCGA-GV-A3JW TCGA-K4-A4AC TCGA-PQ-A6FN 
       20.12         1.12         2.10         6.41         6.48        16.67 

$`17Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20Q TCGA-BT-A20R 
       11.93        19.04        32.84        12.16        19.50         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LB 
       14.89        14.96         5.06         8.35         8.25         5.59 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-BT-A42E TCGA-C4-A0EZ 
        3.65         4.67        12.82         2.07         9.99         8.98 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V 
        1.94        23.01         0.69         0.13         0.07         0.10 
TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR 
        0.07         0.10         0.10        12.92         4.90         7.20 
TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A5 
        5.46         5.19        16.31         1.84         2.53         2.14 
TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE 
       31.40        18.41        19.00       130.88       112.44        16.14 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 
       17.62        15.62         1.81        10.59         7.79       123.85 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IQ TCGA-DK-A3IS 
       87.32         2.20         3.98         7.82        10.49        50.27 
TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
       21.30        20.02         9.67         8.28        10.55       140.81 
TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B2 
       48.00        17.98        48.53        64.64        67.36        15.68 
TCGA-DK-A6B5 TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4IJ 
       32.28        21.24        43.59        24.66         0.10         0.49 
TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 
        0.53         0.59         0.56         0.66         1.38         0.82 
TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 
        1.22        12.89        15.68         8.94         6.87         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM 
       12.43        11.93        15.88        24.30        22.45        16.47 
TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A43S 
       12.82         5.52        13.18        46.78        19.79        14.96 
TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BV 
       12.13        13.38        37.15        11.01         6.87         5.36 
TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A5C1 TCGA-FD-A62N 
        5.69         6.84        27.45         6.87        49.68         2.66 
TCGA-FD-A62O TCGA-FD-A62P TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZF TCGA-FT-A3EE 
        4.83         6.28        15.19         7.13         4.08         3.25 
TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        6.48        61.94        30.61         5.69        26.93        35.24 
TCGA-G2-A2ES TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB 
       17.26         0.85         2.89         2.24        15.81         4.50 
TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GD-A2C5 TCGA-GD-A3OQ TCGA-GD-A3OS 
       15.91        14.07        17.75         7.73         3.12        20.98 
TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JX 
        2.20         6.41         7.66        11.31         4.41         6.15 
TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E 
        5.69         7.63         7.79         4.14         6.67         6.41 
TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
       19.07         1.51         6.74         8.75         3.45         4.67 
TCGA-K4-A4AB TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LC-A66R TCGA-LT-A5Z6 
        2.50        10.52         1.81         4.27         6.35         3.45 
TCGA-MV-A51V TCGA-PQ-A6FI 
       13.48        12.23 

  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              0.43               0.07 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             64.18             140.81 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             8.565              8.265 
[1] "0.4 - 64.2 (8.6)"  "0.1 - 140.8 (8.3)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
[1] "hr=" "1.5"
D71V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  17Q LOSS MUTATED         0       10         6        7
  17Q LOSS WILD-TYPE       2       55        60       51
D71V3, multiclass
           clus
vv          17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  STAGE I                  0                  2
  STAGE II                10                 55
  STAGE III                6                 60
  STAGE IV                 7                 51
                    vv
clus                 T0+T1+T2 T3 T4
  17Q LOSS MUTATED          8  8  6
  17Q LOSS WILD-TYPE       51 82 22
D71V4, multiclass
          clus
vv         17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  T0+T1+T2                8                 51
  T3                      8                 82
  T4                      6                 22
                    vv
clus                  N0  N1  N2  N3
  17Q LOSS MUTATED    15   1   3   2
  17Q LOSS WILD-TYPE 105  17  30   5
D71V5, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  N0               15                105
  N1                1                 17
  N2                3                 30
  N3                2                  5
                    vv
clus                 M0 M1 MX
  17Q LOSS MUTATED    9  1 15
  17Q LOSS WILD-TYPE 94  4 71
D71V6, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  M0                9                 94
  M1                1                  4
  MX               15                 71
D71V7, binary
                    cls
clus                   0   1
  17Q LOSS MUTATED     7  18
  17Q LOSS WILD-TYPE  41 129
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      7   18
  17Q LOSS WILD-TYPE   41  129
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  FEMALE                7                 41
  MALE                 18                129
D71V8, continuous
D71V9, continuous
D71V10, continuous
D71V11, continuous

Clustering(72) Variable = 18P LOSS MUTATION ANALYSIS
D72V1, survival
                    sevent
clus2                  0   1
  18P LOSS MUTATED    28  14
  18P LOSS WILD-TYPE 104  42
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                42                146 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                14                 42 
$`18P LOSS MUTATED`
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20X TCGA-BT-A2LA 
       19.04        32.84         5.06        14.89         8.25        17.16 
TCGA-CF-A1HR TCGA-CF-A47S TCGA-CF-A47T TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A5 
        0.46         0.13         0.07         1.84         2.53         2.14 
TCGA-DK-A1A7 TCGA-DK-A1AB TCGA-DK-A1AF TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A3IQ 
       18.41         8.91        17.62         1.81        10.59        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6B2 TCGA-DK-A6B5 
       50.27        21.30        17.98        64.18        15.68        32.28 
TCGA-E5-A2PC TCGA-E7-A3X6 TCGA-E7-A5KE TCGA-E7-A7DV TCGA-FD-A3B7 TCGA-FD-A3SJ 
       43.59        24.66         0.56         1.22         4.01        24.30 
TCGA-FD-A3SN TCGA-FD-A3SQ TCGA-FD-A62O TCGA-FD-A62S TCGA-G2-A3IE TCGA-GC-A3BM 
       12.82        46.78         4.83         6.38        20.12         2.89 
TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GV-A3JW TCGA-GV-A40E TCGA-PQ-A6FI TCGA-PQ-A6FN 
       14.07         1.12         6.41         6.41        12.23        16.67 

$`18P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20U TCGA-BT-A20V 
       11.93        12.16        17.88        19.50        14.96         5.06 
TCGA-BT-A20W TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK 
        8.35         5.59         3.65         4.67        12.82         2.07 
TCGA-BT-A42E TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HS TCGA-CF-A27C 
        9.99         8.98         1.94        23.01         0.43         0.69 
TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A0YO 
        0.10         0.07         0.10         0.10        12.92         4.90 
TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-DK-A1A6 TCGA-DK-A1AA 
        7.20         5.46         5.19        16.31        31.40        19.00 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AG TCGA-DK-A2I2 TCGA-DK-A2I4 
      130.88       112.44        16.14        15.62         7.79       123.85 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IU 
       87.32         2.20         3.98         7.82         8.22        20.02 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A6AW 
        9.67         8.28        10.55       140.81        48.00        48.53 
TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B6 TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3Y1 
       64.64        67.36        21.24        15.35        26.17         0.10 
TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 
        0.49         0.53         0.59         0.66         1.38         0.82 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B8 TCGA-FD-A3N5 
       12.89        15.68         8.94         6.87        12.43        11.93 
TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SO TCGA-FD-A3SP 
       15.88        45.93        22.45        16.47         5.52        13.18 
TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U 
       19.79         1.97        22.98        14.93        14.96        14.93 
TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU 
        3.62        12.13        13.38        37.15        11.01         6.87 
TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A5C1 
        5.36         5.69         6.84        27.45         6.87        49.68 
TCGA-FD-A62N TCGA-FD-A62P TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FJ-A3ZF 
        2.66         6.28        15.19         7.13         3.48         4.08 
TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        3.25         6.48        61.94        30.61         5.69        26.93 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3OO 
       35.24        17.26         7.04         0.85         2.24        15.81 
TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3WC TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ 
        4.50        15.91        17.75         7.73         2.10         3.12 
TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV 
       20.98         2.20         6.41         7.66        11.31         4.41 
TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK 
        6.15         5.69         7.63         7.79         4.14         6.67 
TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV 
       19.07         1.51         6.74         8.75         3.45         4.67 
TCGA-K4-A4AB TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LC-A66R 
        2.50         6.48        10.52         1.81         4.27         6.35 
TCGA-LT-A5Z6 TCGA-MV-A51V 
        3.45        13.48 

  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              0.07               0.07 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
             64.18             140.81 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
             11.41               7.79 
[1] "0.1 - 64.2 (11.4)" "0.1 - 140.8 (7.8)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" 
[1] "hr=" "1"  
D72V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  18P LOSS MUTATED         0       17        10       17
  18P LOSS WILD-TYPE       2       48        56       41
D72V3, multiclass
           clus
vv          18P LOSS MUTATED 18P LOSS WILD-TYPE
  STAGE I                  0                  2
  STAGE II                17                 48
  STAGE III               10                 56
  STAGE IV                17                 41
                    vv
clus                 T0+T1+T2 T3 T4
  18P LOSS MUTATED         18 21  5
  18P LOSS WILD-TYPE       41 69 23
D72V4, multiclass
          clus
vv         18P LOSS MUTATED 18P LOSS WILD-TYPE
  T0+T1+T2               18                 41
  T3                     21                 69
  T4                      5                 23
                    vv
clus                 N0 N1 N2 N3
  18P LOSS MUTATED   24  5 11  1
  18P LOSS WILD-TYPE 96 13 22  6
D72V5, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  N0               24                 96
  N1                5                 13
  N2               11                 22
  N3                1                  6
                    vv
clus                 M0 M1 MX
  18P LOSS MUTATED   29  0 17
  18P LOSS WILD-TYPE 74  5 69
D72V6, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  M0               29                 74
  M1                0                  5
  MX               17                 69
D72V7, binary
                    cls
clus                   0   1
  18P LOSS MUTATED    13  33
  18P LOSS WILD-TYPE  35 114
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED     13   33
  18P LOSS WILD-TYPE   35  114
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  FEMALE               13                 35
  MALE                 33                114
D72V8, continuous
D72V9, continuous
D72V10, continuous
D72V11, continuous

Clustering(73) Variable = 18Q LOSS MUTATION ANALYSIS
D73V1, survival
                    sevent
clus2                 0  1
  18Q LOSS MUTATED   48 17
  18Q LOSS WILD-TYPE 84 39
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                65                123 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                17                 39 
$`18Q LOSS MUTATED`
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20W TCGA-BT-A20X 
       19.04        32.84         5.06        14.89         8.35         8.25 
TCGA-BT-A2LA TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A47S TCGA-CF-A47T TCGA-CU-A0YN 
       17.16         0.46         0.43         0.13         0.07        12.92 
TCGA-CU-A0YR TCGA-CU-A5W6 TCGA-DK-A1A5 TCGA-DK-A1A7 TCGA-DK-A1AB TCGA-DK-A1AF 
        7.20         1.84         2.14        18.41         8.91        17.62 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IQ 
        1.81        10.59        87.32         2.20         3.98        10.49 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3X1 TCGA-DK-A6AV TCGA-DK-A6B2 TCGA-DK-A6B5 
       50.27        21.30        48.00        64.18        15.68        32.28 
TCGA-E5-A2PC TCGA-E7-A3X6 TCGA-E7-A5KE TCGA-E7-A7DV TCGA-FD-A3B4 TCGA-FD-A3B7 
       43.59        24.66         0.56         1.22        15.68         4.01 
TCGA-FD-A3NA TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SS 
       45.93        12.82         5.52        13.18        46.78         1.97 
TCGA-FD-A43N TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62S TCGA-G2-A2EF TCGA-G2-A3IE 
       22.98         2.66         4.83         6.38        61.94        20.12 
TCGA-GC-A3BM TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3YS TCGA-GD-A3OS TCGA-GD-A6C6 
        2.89        15.91        14.07         1.12        20.98         2.20 
TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WS 
        6.41         6.15         6.41        19.07         6.74         8.75 
TCGA-K4-A3WV TCGA-LC-A66R TCGA-MV-A51V TCGA-PQ-A6FI TCGA-PQ-A6FN 
        4.67         6.35        13.48        12.23        16.67 

$`18Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20U TCGA-BT-A20V 
       11.93        12.16        17.88        19.50        14.96         5.06 
TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-BT-A42E 
        5.59         3.65         4.67        12.82         2.07         9.99 
TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A27C TCGA-CF-A47V TCGA-CF-A47W 
        8.98         1.94        23.01         0.69         0.10         0.07 
TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YO TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL 
        0.10         0.10         4.90         5.46         5.19        16.31 
TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1AA TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE 
        2.53        31.40        19.00       130.88       112.44        16.14 
TCGA-DK-A1AG TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A3IM TCGA-DK-A3IN TCGA-DK-A3IU 
       15.62         7.79       123.85         7.82         8.22        20.02 
TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X2 TCGA-DK-A6AW 
        9.67         8.28        10.55       140.81        17.98        48.53 
TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B6 TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3Y1 
       64.64        67.36        21.24        15.35        26.17         0.10 
TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 
        0.49         0.53         0.59         0.66         1.38         0.82 
TCGA-FD-A3B3 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
       12.89         8.94         6.87        12.43        11.93        15.88 
TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SR TCGA-FD-A43P TCGA-FD-A43S 
       24.30        22.45        16.47        19.79        14.93        14.96 
TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT 
       14.93         3.62        12.13        13.38        37.15        11.01 
TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C0 
        6.87         5.36         5.69         6.84        27.45         6.87 
TCGA-FD-A5C1 TCGA-FD-A62P TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FJ-A3ZF 
       49.68         6.28        15.19         7.13         3.48         4.08 
TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        3.25         6.48        30.61         5.69        26.93        35.24 
TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3VY TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB 
       17.26         7.04         0.85         2.24        15.81         4.50 
TCGA-GC-A3WC TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GU-A42P TCGA-GU-A42Q 
       17.75         7.73         2.10         3.12         6.41         7.66 
TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI 
       11.31         4.41         5.69         7.63         7.79         4.14 
TCGA-GV-A3QK TCGA-H4-A2HO TCGA-K4-A3WU TCGA-K4-A4AB TCGA-K4-A4AC TCGA-K4-A54R 
        6.67         1.51         3.45         2.50         6.48        10.52 
TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LT-A5Z6 
        1.81         4.27         3.45 

  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
              0.07               0.07 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
             87.32             140.81 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
             10.49               7.79 
[1] "0.1 - 87.3 (10.5)" "0.1 - 140.8 (7.8)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
[1] "hr=" "1.4"
D73V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  18Q LOSS MUTATED         0       23        20       22
  18Q LOSS WILD-TYPE       2       42        46       36
D73V3, multiclass
           clus
vv          18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  STAGE I                  0                  2
  STAGE II                23                 42
  STAGE III               20                 46
  STAGE IV                22                 36
                    vv
clus                 T0+T1+T2 T3 T4
  18Q LOSS MUTATED         23 32  8
  18Q LOSS WILD-TYPE       36 58 20
D73V4, multiclass
          clus
vv         18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  T0+T1+T2               23                 36
  T3                     32                 58
  T4                      8                 20
                    vv
clus                 N0 N1 N2 N3
  18Q LOSS MUTATED   40  7 12  2
  18Q LOSS WILD-TYPE 80 11 21  5
D73V5, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  N0               40                 80
  N1                7                 11
  N2               12                 21
  N3                2                  5
                    vv
clus                 M0 M1 MX
  18Q LOSS MUTATED   37  1 30
  18Q LOSS WILD-TYPE 66  4 56
D73V6, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  M0               37                 66
  M1                1                  4
  MX               30                 56
D73V7, binary
                    cls
clus                  0  1
  18Q LOSS MUTATED   20 48
  18Q LOSS WILD-TYPE 28 99
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     20   48
  18Q LOSS WILD-TYPE   28   99
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  FEMALE               20                 28
  MALE                 48                 99
D73V8, continuous
D73V9, continuous
D73V10, continuous
D73V11, continuous

Clustering(74) Variable = 19P LOSS MUTATION ANALYSIS
D74V1, survival
                    sevent
clus2                  0   1
  19P LOSS MUTATED    28  22
  19P LOSS WILD-TYPE 104  34
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                50                138 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                22                 34 
$`19P LOSS MUTATED`
TCGA-BT-A20J TCGA-BT-A20R TCGA-BT-A20V TCGA-BT-A2LB TCGA-BT-A2LD TCGA-BT-A3PH 
       19.04         5.06         5.06         5.59         3.65         4.67 
TCGA-BT-A3PK TCGA-BT-A42E TCGA-C4-A0EZ TCGA-C4-A0F6 TCGA-CU-A0YN TCGA-DK-A1A5 
        2.07         9.99         8.98        23.01        12.92         2.14 
TCGA-DK-A1AD TCGA-DK-A2I6 TCGA-DK-A3IL TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IT 
      112.44        87.32         3.98         8.22        10.49        21.30 
TCGA-DK-A3X2 TCGA-E5-A2PC TCGA-E7-A4IJ TCGA-FD-A3SJ TCGA-FD-A3SM TCGA-FD-A3SO 
       17.98        43.59         0.49        24.30        16.47         5.52 
TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A5BV TCGA-FD-A5BY TCGA-FD-A5BZ 
        1.97        22.98        14.93         5.36         6.84        27.45 
TCGA-FD-A5C0 TCGA-FD-A5C1 TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A61P TCGA-G2-A2ES 
        6.87        49.68         3.48         4.08         6.48        17.26 
TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GU-A42Q 
        7.04        20.12         2.24         2.20         6.41         7.66 
TCGA-GV-A3JZ TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A54R TCGA-LC-A66R TCGA-MV-A51V 
        5.69         6.74         8.75        10.52         6.35        13.48 
TCGA-PQ-A6FI TCGA-PQ-A6FN 
       12.23        16.67 

$`19P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T 
       11.93        32.84        12.16        17.88        19.50        14.89 
TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A3PJ TCGA-C4-A0F0 
       14.96         8.35         8.25        17.16        12.82         1.94 
TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V 
        0.46         0.43         0.69         0.13         0.07         0.10 
TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ 
        0.07         0.10         0.10         4.90         7.20         5.46 
TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1A7 
        5.19        16.31         1.84         2.53        31.40        18.41 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
       19.00         8.91       130.88        16.14        17.62        15.62 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A3IK TCGA-DK-A3IM 
        1.81        10.59         7.79       123.85         2.20         7.82 
TCGA-DK-A3IS TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
       50.27        20.02         9.67         8.28        10.55       140.81 
TCGA-DK-A3X1 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B2 
       48.00        64.18        48.53        64.64        67.36        15.68 
TCGA-DK-A6B5 TCGA-DK-A6B6 TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 
       32.28        21.24        15.35        26.17        24.66         0.10 
TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 
        0.53         0.59         0.56         0.66         1.38         0.82 
TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 
        1.22        12.89        15.68         8.94         6.87         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SN 
       12.43        11.93        15.88        45.93        22.45        12.82 
TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43X 
       13.18        46.78        19.79        14.96        14.93         3.62 
TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BX 
       12.13        13.38        37.15        11.01         6.87         5.69 
TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 
        2.66         4.83         6.28         6.38        15.19         7.13 
TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO 
        3.25        61.94        30.61         5.69        26.93        35.24 
TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD 
        0.85         2.89        15.81         4.50        15.91        14.07 
TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS 
       17.75         1.12         7.73         2.10         3.12        20.98 
TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3QF TCGA-GV-A3QH 
       11.31         4.41         6.41         6.15         7.63         7.79 
TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-K4-A3WU 
        4.14         6.67         6.41        19.07         1.51         3.45 
TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A4AC TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LT-A5Z6 
        4.67         2.50         6.48         1.81         4.27         3.45 

  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              0.49               0.07 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
            112.44             140.81 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
             7.940              8.315 
[1] "0.5 - 112.4 (7.9)" "0.1 - 140.8 (8.3)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" 
[1] "hr=" "1.8"
D74V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  19P LOSS MUTATED         0       10        18       22
  19P LOSS WILD-TYPE       2       55        48       36
D74V3, multiclass
           clus
vv          19P LOSS MUTATED 19P LOSS WILD-TYPE
  STAGE I                  0                  2
  STAGE II                10                 55
  STAGE III               18                 48
  STAGE IV                22                 36
                    vv
clus                 T0+T1+T2 T3 T4
  19P LOSS MUTATED         10 30  5
  19P LOSS WILD-TYPE       49 60 23
D74V4, multiclass
          clus
vv         19P LOSS MUTATED 19P LOSS WILD-TYPE
  T0+T1+T2               10                 49
  T3                     30                 60
  T4                      5                 23
                    vv
clus                 N0 N1 N2 N3
  19P LOSS MUTATED   25  8 10  3
  19P LOSS WILD-TYPE 95 10 23  4
D74V5, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  N0               25                 95
  N1                8                 10
  N2               10                 23
  N3                3                  4
                    vv
clus                 M0 M1 MX
  19P LOSS MUTATED   22  4 24
  19P LOSS WILD-TYPE 81  1 62
D74V6, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  M0               22                 81
  M1                4                  1
  MX               24                 62
D74V7, binary
                    cls
clus                   0   1
  19P LOSS MUTATED    14  36
  19P LOSS WILD-TYPE  34 111
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED     14   36
  19P LOSS WILD-TYPE   34  111
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  FEMALE               14                 34
  MALE                 36                111
D74V8, continuous
D74V9, continuous
D74V10, continuous
D74V11, continuous

Clustering(75) Variable = 19Q LOSS MUTATION ANALYSIS
D75V1, survival
                    sevent
clus2                  0   1
  19Q LOSS MUTATED    17  13
  19Q LOSS WILD-TYPE 115  43
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                30                158 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                13                 43 
$`19Q LOSS MUTATED`
TCGA-BT-A20R TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PK TCGA-C4-A0EZ TCGA-CU-A0YN 
        5.06         3.65         4.67         2.07         8.98        12.92 
TCGA-DK-A1AD TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3X2 TCGA-E7-A4IJ 
      112.44         8.22        10.49        21.30        17.98         0.49 
TCGA-FD-A3SO TCGA-FD-A43P TCGA-FD-A5BV TCGA-FD-A5BY TCGA-FD-A5C1 TCGA-FJ-A3ZE 
        5.52        14.93         5.36         6.84        49.68         3.48 
TCGA-FT-A61P TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-GC-A3I6 TCGA-GD-A6C6 
        6.48        17.26         7.04        20.12         2.24         2.20 
TCGA-K4-A54R TCGA-LC-A66R TCGA-LT-A5Z6 TCGA-MV-A51V TCGA-PQ-A6FI TCGA-PQ-A6FN 
       10.52         6.35         3.45        13.48        12.23        16.67 

$`19Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q 
       11.93        19.04        32.84        12.16        17.88        19.50 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
       14.89        14.96         5.06         8.35         8.25        17.16 
TCGA-BT-A2LB TCGA-BT-A3PJ TCGA-BT-A42E TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR 
        5.59        12.82         9.99         1.94        23.01         0.46 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W 
        0.43         0.69         0.13         0.07         0.10         0.07 
TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU 
        0.10         0.10         4.90         7.20         5.46         5.19 
TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 
       16.31         1.84         2.53         2.14        31.40        18.41 
TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG 
       19.00         8.91       130.88        16.14        17.62        15.62 
TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK 
        1.81        10.59         7.79       123.85        87.32         2.20 
TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IS TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW 
        3.98         7.82        50.27        20.02         9.67         8.28 
TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 
       10.55       140.81        48.00        64.18        48.53        64.64 
TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E5-A4TZ 
       67.36        15.68        32.28        21.24        43.59        15.35 
TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KE 
       26.17        24.66         0.10         0.53         0.59         0.56 
TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 
        0.66         1.38         0.82         1.22        12.89        15.68 
TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 
        8.94         6.87         4.01        12.43        11.93        15.88 
TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SP 
       45.93        24.30        22.45        16.47        12.82        13.18 
TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43S TCGA-FD-A43U 
       46.78        19.79         1.97        22.98        14.96        14.93 
TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU 
        3.62        12.13        13.38        37.15        11.01         6.87 
TCGA-FD-A5BX TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62P 
        5.69        27.45         6.87         2.66         4.83         6.28 
TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-G2-A2EF 
        6.38        15.19         7.13         4.08         3.25        61.94 
TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A3VY TCGA-GC-A3BM 
       30.61         5.69        26.93        35.24         0.85         2.89 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS 
       15.81         4.50        15.91        14.07        17.75         1.12 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42P TCGA-GU-A42Q 
        7.73         2.10         3.12        20.98         6.41         7.66 
TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF 
       11.31         4.41         6.41         6.15         5.69         7.63 
TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO 
        7.79         4.14         6.67         6.41        19.07         1.51 
TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A4AC 
        6.74         8.75         3.45         4.67         2.50         6.48 
TCGA-K4-A6FZ TCGA-K4-A6MB 
        1.81         4.27 

  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              0.49               0.07 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
            112.44             140.81 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             7.630              8.315 
[1] "0.5 - 112.4 (7.6)" "0.1 - 140.8 (8.3)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
[1] "hr=" "1.8"
D75V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  19Q LOSS MUTATED         0        9        11       10
  19Q LOSS WILD-TYPE       2       56        55       48
D75V3, multiclass
           clus
vv          19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  STAGE I                  0                  2
  STAGE II                 9                 56
  STAGE III               11                 55
  STAGE IV                10                 48
                    vv
clus                 T0+T1+T2 T3 T4
  19Q LOSS MUTATED          5 19  2
  19Q LOSS WILD-TYPE       54 71 26
D75V4, multiclass
          clus
vv         19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  T0+T1+T2                5                 54
  T3                     19                 71
  T4                      2                 26
                    vv
clus                  N0  N1  N2  N3
  19Q LOSS MUTATED    16   4   5   1
  19Q LOSS WILD-TYPE 104  14  28   6
D75V5, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  N0               16                104
  N1                4                 14
  N2                5                 28
  N3                1                  6
                    vv
clus                 M0 M1 MX
  19Q LOSS MUTATED   12  2 16
  19Q LOSS WILD-TYPE 91  3 70
D75V6, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  M0               12                 91
  M1                2                  3
  MX               16                 70
D75V7, binary
                    cls
clus                   0   1
  19Q LOSS MUTATED     7  23
  19Q LOSS WILD-TYPE  41 124
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      7   23
  19Q LOSS WILD-TYPE   41  124
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  FEMALE                7                 41
  MALE                 23                124
D75V8, continuous
D75V9, continuous
D75V10, continuous
D75V11, continuous

Clustering(76) Variable = 20P LOSS MUTATION ANALYSIS
D76V1, survival
                    sevent
clus2                  0   1
  20P LOSS MUTATED     9   4
  20P LOSS WILD-TYPE 123  52
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                13                175 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 4                 52 
$`20P LOSS MUTATED`
TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20P TCGA-CF-A47S TCGA-DK-A1A3 TCGA-DK-A3IM 
       19.04        32.84        17.88         0.13         2.53         7.82 
TCGA-DK-A3X1 TCGA-DK-A6AV TCGA-FD-A5C0 TCGA-GU-A42R TCGA-GV-A3JZ TCGA-GV-A40E 
       48.00        64.18         6.87        11.31         5.69         6.41 
TCGA-K4-A4AC 
        6.48 

$`20P LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20O TCGA-BT-A20Q TCGA-BT-A20R TCGA-BT-A20T TCGA-BT-A20U 
       11.93        12.16        19.50         5.06        14.89        14.96 
TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LB TCGA-BT-A2LD 
        5.06         8.35         8.25        17.16         5.59         3.65 
TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-BT-A42E TCGA-C4-A0EZ TCGA-C4-A0F0 
        4.67        12.82         2.07         9.99         8.98         1.94 
TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A47T TCGA-CF-A47V 
       23.01         0.46         0.43         0.69         0.07         0.10 
TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR 
        0.07         0.10         0.10        12.92         4.90         7.20 
TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A5 TCGA-DK-A1A6 
        5.46         5.19        16.31         1.84         2.14        31.40 
TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE 
       18.41        19.00         8.91       130.88       112.44        16.14 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 
       17.62        15.62         1.81        10.59         7.79       123.85 
TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IS 
       87.32         2.20         3.98         8.22        10.49        50.27 
TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
       21.30        20.02         9.67         8.28        10.55       140.81 
TCGA-DK-A3X2 TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-DK-A6B5 
       17.98        48.53        64.64        67.36        15.68        32.28 
TCGA-DK-A6B6 TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 
       21.24        43.59        15.35        26.17        24.66         0.10 
TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 
        0.49         0.53         0.59         0.56         0.66         1.38 
TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 
        0.82         1.22        12.89        15.68         8.94         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ 
        4.01        12.43        11.93        15.88        45.93        24.30 
TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ 
       22.45        16.47        12.82         5.52        13.18        46.78 
TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U 
       19.79         1.97        22.98        14.93        14.96        14.93 
TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU 
        3.62        12.13        13.38        37.15        11.01         6.87 
TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C1 TCGA-FD-A62N 
        5.36         5.69         6.84        27.45        49.68         2.66 
TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZE 
        4.83         6.28         6.38        15.19         7.13         3.48 
TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK 
        4.08         3.25         6.48        61.94        30.61         5.69 
TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY 
       26.93        35.24        17.26         7.04        20.12         0.85 
TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD 
        2.89         2.24        15.81         4.50        15.91        14.07 
TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS 
       17.75         1.12         7.73         2.10         3.12        20.98 
TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX 
        2.20         6.41         7.66         4.41         6.41         6.15 
TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40G TCGA-H4-A2HO 
        7.63         7.79         4.14         6.67        19.07         1.51 
TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A4AB TCGA-K4-A54R 
        6.74         8.75         3.45         4.67         2.50        10.52 
TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LC-A66R TCGA-LT-A5Z6 TCGA-MV-A51V TCGA-PQ-A6FI 
        1.81         4.27         6.35         3.45        13.48        12.23 
TCGA-PQ-A6FN 
       16.67 

  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              0.13               0.07 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
             64.18             140.81 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              7.82               8.28 
[1] "0.1 - 64.2 (7.8)"  "0.1 - 140.8 (8.3)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D76V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  20P LOSS MUTATED         0        6         4        3
  20P LOSS WILD-TYPE       2       59        62       55
D76V3, multiclass
           clus
vv          20P LOSS MUTATED 20P LOSS WILD-TYPE
  STAGE I                  0                  2
  STAGE II                 6                 59
  STAGE III                4                 62
  STAGE IV                 3                 55
                    vv
clus                 T0+T1+T2 T3 T4
  20P LOSS MUTATED          5  6  1
  20P LOSS WILD-TYPE       54 84 27
D76V4, multiclass
          clus
vv         20P LOSS MUTATED 20P LOSS WILD-TYPE
  T0+T1+T2                5                 54
  T3                      6                 84
  T4                      1                 27
                    vv
clus                  N0  N1  N2  N3
  20P LOSS MUTATED     8   0   3   1
  20P LOSS WILD-TYPE 112  18  30   6
D76V5, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  N0                8                112
  N1                0                 18
  N2                3                 30
  N3                1                  6
                    vv
clus                 M0 M1 MX
  20P LOSS MUTATED    6  0  8
  20P LOSS WILD-TYPE 97  5 78
D76V6, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  M0                6                 97
  M1                0                  5
  MX                8                 78
D76V7, binary
                    cls
clus                   0   1
  20P LOSS MUTATED     3  11
  20P LOSS WILD-TYPE  45 136
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      3   11
  20P LOSS WILD-TYPE   45  136
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  FEMALE                3                 45
  MALE                 11                136
D76V8, continuous
D76V9, continuous
D76V10, continuous
D76V11, continuous

Clustering(77) Variable = 20Q LOSS MUTATION ANALYSIS
D77V1, survival
                    sevent
clus2                  0   1
  20Q LOSS MUTATED     3   2
  20Q LOSS WILD-TYPE 129  54
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 5                183 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 2                 54 
$`20Q LOSS MUTATED`
TCGA-BT-A20P TCGA-BT-A20V TCGA-DK-A1A3 TCGA-DK-A2I6 TCGA-GV-A3JZ 
       17.88         5.06         2.53        87.32         5.69 

$`20Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20Q TCGA-BT-A20R 
       11.93        19.04        32.84        12.16        19.50         5.06 
TCGA-BT-A20T TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LB 
       14.89        14.96         8.35         8.25        17.16         5.59 
TCGA-BT-A2LD TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-BT-A42E TCGA-C4-A0EZ 
        3.65         4.67        12.82         2.07         9.99         8.98 
TCGA-C4-A0F0 TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A47S 
        1.94        23.01         0.46         0.43         0.69         0.13 
TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47X TCGA-CF-A47Y TCGA-CU-A0YN 
        0.07         0.10         0.07         0.10         0.10        12.92 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-CU-A3YL TCGA-CU-A5W6 
        4.90         7.20         5.46         5.19        16.31         1.84 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC 
        2.14        31.40        18.41        19.00         8.91       130.88 
TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 
      112.44        16.14        17.62        15.62         1.81        10.59 
TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN 
        7.79       123.85         2.20         3.98         7.82         8.22 
TCGA-DK-A3IQ TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW 
       10.49        50.27        21.30        20.02         9.67         8.28 
TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6AW 
       10.55       140.81        48.00        17.98        64.18        48.53 
TCGA-DK-A6B0 TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-DK-A6B6 TCGA-E5-A2PC 
       64.64        67.36        15.68        32.28        21.24        43.59 
TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4IJ TCGA-E7-A4XJ 
       15.35        26.17        24.66         0.10         0.49         0.53 
TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV 
        0.59         0.56         0.66         1.38         0.82         1.22 
TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
       12.89        15.68         8.94         6.87         4.01        12.43 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM 
       11.93        15.88        45.93        24.30        22.45        16.47 
TCGA-FD-A3SN TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS 
       12.82         5.52        13.18        46.78        19.79         1.97 
TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A43Y 
       22.98        14.93        14.96        14.93         3.62        12.13 
TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BX 
       13.38        37.15        11.01         6.87         5.36         5.69 
TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A5C1 TCGA-FD-A62N TCGA-FD-A62O 
        6.84        27.45         6.87        49.68         2.66         4.83 
TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FJ-A3ZF 
        6.28         6.38        15.19         7.13         3.48         4.08 
TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EL 
        3.25         6.48        61.94        30.61         5.69        26.93 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM 
       35.24        17.26         7.04        20.12         0.85         2.89 
TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC 
        2.24        15.81         4.50        15.91        14.07        17.75 
TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GD-A6C6 
        1.12         7.73         2.10         3.12        20.98         2.20 
TCGA-GU-A42P TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JX 
        6.41         7.66        11.31         4.41         6.41         6.15 
TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G 
        7.63         7.79         4.14         6.67         6.41        19.07 
TCGA-H4-A2HO TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A4AB 
        1.51         6.74         8.75         3.45         4.67         2.50 
TCGA-K4-A4AC TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB TCGA-LC-A66R TCGA-LT-A5Z6 
        6.48        10.52         1.81         4.27         6.35         3.45 
TCGA-MV-A51V TCGA-PQ-A6FI TCGA-PQ-A6FN 
       13.48        12.23        16.67 

  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
              2.53               0.07 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
             87.32             140.81 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
              5.69               8.28 
[1] "2.5 - 87.3 (5.7)"  "0.1 - 140.8 (8.3)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D77V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  20Q LOSS MUTATED         0        0         1        4
  20Q LOSS WILD-TYPE       2       65        65       54
D77V3, multiclass
           clus
vv          20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  STAGE I                  0                  2
  STAGE II                 0                 65
  STAGE III                1                 65
  STAGE IV                 4                 54
                    vv
clus                 T0+T1+T2 T3 T4
  20Q LOSS MUTATED          1  2  2
  20Q LOSS WILD-TYPE       58 88 26
D77V4, multiclass
          clus
vv         20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  T0+T1+T2                1                 58
  T3                      2                 88
  T4                      2                 26
                    vv
clus                  N0  N1  N2  N3
  20Q LOSS MUTATED     1   1   2   1
  20Q LOSS WILD-TYPE 119  17  31   6
D77V5, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  N0                1                119
  N1                1                 17
  N2                2                 31
  N3                1                  6
                    vv
clus                 M0 M1 MX
  20Q LOSS MUTATED    4  0  1
  20Q LOSS WILD-TYPE 99  5 85
D77V6, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  M0                4                 99
  M1                0                  5
  MX                1                 85
D77V7, binary
                    cls
clus                   0   1
  20Q LOSS MUTATED     2   3
  20Q LOSS WILD-TYPE  46 144
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      2    3
  20Q LOSS WILD-TYPE   46  144
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  FEMALE                2                 46
  MALE                  3                144
D77V8, continuous
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 1                 53 
        TCGA-CF-A1HS         TCGA-CF-A27C         TCGA-CF-A3MF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CF-A3MG         TCGA-CF-A3MH         TCGA-CF-A3MI 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CF-A47S         TCGA-CF-A47T         TCGA-CF-A47V 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CF-A47W         TCGA-CF-A47X         TCGA-CF-A47Y 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A2HX         TCGA-DK-A3IN         TCGA-DK-A3IV 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A3WX         TCGA-DK-A3X2         TCGA-DK-A6B2 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A6B5         TCGA-DK-A6B6         TCGA-E5-A2PC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-E5-A4TZ         TCGA-E5-A4U1         TCGA-E7-A519 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-E7-A541         TCGA-E7-A7DV         TCGA-FT-A61P 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GC-A3RC         TCGA-GC-A3RD         TCGA-GC-A3YS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GD-A3OS         TCGA-GD-A6C6         TCGA-GV-A3JV 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GV-A3JW         TCGA-GV-A3JX         TCGA-GV-A3QF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
D77V9, continuous
D77V10, continuous
D77V11, continuous
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 1                 41 
        TCGA-BT-A20N         TCGA-BT-A20T         TCGA-BT-A20W 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-BT-A3PJ         TCGA-CU-A0YN         TCGA-CU-A0YO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-DK-A1AA 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A1AC         TCGA-DK-A3IN         TCGA-DK-A3IS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A6B0 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DK-A6B6         TCGA-E7-A541         TCGA-FD-A3B6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A3B7         TCGA-FD-A3NA         TCGA-FD-A3SN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A3SQ         TCGA-FD-A3SR         TCGA-FD-A43P 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FD-A5BX         TCGA-FD-A5C0         TCGA-FD-A62P 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3RB         TCGA-GC-A3YS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-GU-A42P         TCGA-GV-A3QF         TCGA-GV-A3QG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-K4-A3WS         TCGA-K4-A3WU         TCGA-K4-A4AB 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-K4-A4AC         TCGA-K4-A54R 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 

Clustering(78) Variable = 21Q LOSS MUTATION ANALYSIS
D78V1, survival
                    sevent
clus2                  0   1
  21Q LOSS MUTATED    17  11
  21Q LOSS WILD-TYPE 115  45
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                28                160 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                11                 45 
$`21Q LOSS MUTATED`
TCGA-BT-A20T TCGA-BT-A20V TCGA-BT-A20X TCGA-BT-A42E TCGA-CF-A1HR TCGA-CF-A47X 
       14.89         5.06         8.25         9.99         0.46         0.10 
TCGA-CU-A0YN TCGA-CU-A3QU TCGA-CU-A5W6 TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A6B6 
       12.92         5.19         1.84         8.22        10.49        21.24 
TCGA-E5-A2PC TCGA-FD-A3B5 TCGA-FD-A3SL TCGA-FD-A3SO TCGA-FD-A43X TCGA-FD-A43Y 
       43.59         8.94        22.45         5.52         3.62        12.13 
TCGA-FD-A5BV TCGA-FD-A5BY TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-GC-A3YS TCGA-GV-A3JV 
        5.36         6.84        61.94        30.61         1.12         4.41 
TCGA-GV-A3QI TCGA-K4-A4AB TCGA-K4-A4AC TCGA-LT-A5Z6 
        4.14         2.50         6.48         3.45 

$`21Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q 
       11.93        19.04        32.84        12.16        17.88        19.50 
TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20W TCGA-BT-A2LA TCGA-BT-A2LB TCGA-BT-A2LD 
        5.06        14.96         8.35        17.16         5.59         3.65 
TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-C4-A0EZ TCGA-C4-A0F0 TCGA-C4-A0F6 
        4.67        12.82         2.07         8.98         1.94        23.01 
TCGA-CF-A1HS TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W 
        0.43         0.69         0.13         0.07         0.10         0.07 
TCGA-CF-A47Y TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ TCGA-CU-A3YL TCGA-DK-A1A3 
        0.10         4.90         7.20         5.46        16.31         2.53 
TCGA-DK-A1A5 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC 
        2.14        31.40        18.41        19.00         8.91       130.88 
TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX TCGA-DK-A2I1 
      112.44        16.14        17.62        15.62         1.81        10.59 
TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM 
        7.79       123.85        87.32         2.20         3.98         7.82 
TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IU TCGA-DK-A3IV TCGA-DK-A3WW TCGA-DK-A3WX 
       50.27        21.30        20.02         9.67         8.28        10.55 
TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 
      140.81        48.00        17.98        64.18        48.53        64.64 
TCGA-DK-A6B1 TCGA-DK-A6B2 TCGA-DK-A6B5 TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3X6 
       67.36        15.68        32.28        15.35        26.17        24.66 
TCGA-E7-A3Y1 TCGA-E7-A4IJ TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A5KF 
        0.10         0.49         0.53         0.59         0.56         0.66 
TCGA-E7-A677 TCGA-E7-A678 TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B4 TCGA-FD-A3B6 
        1.38         0.82         1.22        12.89        15.68         6.87 
TCGA-FD-A3B7 TCGA-FD-A3B8 TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ 
        4.01        12.43        11.93        15.88        45.93        24.30 
TCGA-FD-A3SM TCGA-FD-A3SN TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A3SR TCGA-FD-A3SS 
       16.47        12.82        13.18        46.78        19.79         1.97 
TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43U TCGA-FD-A5BR TCGA-FD-A5BS 
       22.98        14.93        14.96        14.93        13.38        37.15 
TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BX TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A5C1 
       11.01         6.87         5.69        27.45         6.87        49.68 
TCGA-FD-A62N TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z7 TCGA-FJ-A3Z9 
        2.66         4.83         6.28         6.38        15.19         7.13 
TCGA-FJ-A3ZE TCGA-FJ-A3ZF TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EK TCGA-G2-A2EL 
        3.48         4.08         3.25         6.48         5.69        26.93 
TCGA-G2-A2EO TCGA-G2-A2ES TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM 
       35.24        17.26         7.04        20.12         0.85         2.89 
TCGA-GC-A3I6 TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC 
        2.24        15.81         4.50        15.91        14.07        17.75 
TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GD-A6C6 TCGA-GU-A42P 
        7.73         2.10         3.12        20.98         2.20         6.41 
TCGA-GU-A42Q TCGA-GU-A42R TCGA-GV-A3JW TCGA-GV-A3JX TCGA-GV-A3JZ TCGA-GV-A3QF 
        7.66        11.31         6.41         6.15         5.69         7.63 
TCGA-GV-A3QH TCGA-GV-A3QK TCGA-GV-A40E TCGA-GV-A40G TCGA-H4-A2HO TCGA-H4-A2HQ 
        7.79         6.67         6.41        19.07         1.51         6.74 
TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A3WV TCGA-K4-A54R TCGA-K4-A6FZ TCGA-K4-A6MB 
        8.75         3.45         4.67        10.52         1.81         4.27 
TCGA-LC-A66R TCGA-MV-A51V TCGA-PQ-A6FI TCGA-PQ-A6FN 
        6.35        13.48        12.23        16.67 

  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
              0.10               0.07 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
             61.94             140.81 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
              6.66               8.83 
[1] "0.1 - 61.9 (6.7)"  "0.1 - 140.8 (8.8)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D78V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  21Q LOSS MUTATED         0        7        10       10
  21Q LOSS WILD-TYPE       2       58        56       48
D78V3, multiclass
           clus
vv          21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  STAGE I                  0                  2
  STAGE II                 7                 58
  STAGE III               10                 56
  STAGE IV                10                 48
                    vv
clus                 T0+T1+T2 T3 T4
  21Q LOSS MUTATED          6 11  7
  21Q LOSS WILD-TYPE       53 79 21
D78V4, multiclass
          clus
vv         21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  T0+T1+T2                6                 53
  T3                     11                 79
  T4                      7                 21
                    vv
clus                  N0  N1  N2  N3
  21Q LOSS MUTATED    16   7   3   0
  21Q LOSS WILD-TYPE 104  11  30   7
D78V5, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  N0               16                104
  N1                7                 11
  N2                3                 30
  N3                0                  7
                    vv
clus                 M0 M1 MX
  21Q LOSS MUTATED   13  1 14
  21Q LOSS WILD-TYPE 90  4 72
D78V6, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  M0               13                 90
  M1                1                  4
  MX               14                 72
D78V7, binary
                    cls
clus                   0   1
  21Q LOSS MUTATED     5  23
  21Q LOSS WILD-TYPE  43 124
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED      5   23
  21Q LOSS WILD-TYPE   43  124
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  FEMALE                5                 43
  MALE                 23                124
D78V8, continuous
D78V9, continuous
D78V10, continuous
D78V11, continuous

Clustering(79) Variable = 22Q LOSS MUTATION ANALYSIS
D79V1, survival
                    sevent
clus2                 0  1
  22Q LOSS MUTATED   50 22
  22Q LOSS WILD-TYPE 82 34
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                72                116 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                22                 34 
$`22Q LOSS MUTATED`
TCGA-BL-A13J TCGA-BT-A20J TCGA-BT-A20R TCGA-BT-A42E TCGA-C4-A0EZ TCGA-C4-A0F0 
        2.66        19.04         5.06         9.99         8.98         1.94 
TCGA-CF-A47X TCGA-CU-A0YN TCGA-CU-A3KJ TCGA-CU-A3QU TCGA-DK-A1A7 TCGA-DK-A2HX 
        0.10        12.92         5.46         5.19        18.41         1.81 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A3IL TCGA-DK-A3IM TCGA-DK-A3IN 
       10.59         7.79       123.85         3.98         7.82         8.22 
TCGA-DK-A3IQ TCGA-DK-A3IT TCGA-DK-A3IV TCGA-DK-A3X2 TCGA-DK-A6B1 TCGA-DK-A6B2 
       10.49        21.30         9.67        17.98        67.36        15.68 
TCGA-DK-A6B5 TCGA-E5-A2PC TCGA-E5-A4TZ TCGA-E7-A5KE TCGA-E7-A7DV TCGA-FD-A3B3 
       32.28        43.59        15.35         0.56         1.22        12.89 
TCGA-FD-A3B4 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3N5 TCGA-FD-A3SJ TCGA-FD-A3SN 
       15.68         8.94         6.87        11.93        24.30        12.82 
TCGA-FD-A3SO TCGA-FD-A3SR TCGA-FD-A3SS TCGA-FD-A43N TCGA-FD-A43U TCGA-FD-A43Y 
        5.52        19.79         1.97        22.98        14.93        12.13 
TCGA-FD-A5BV TCGA-FD-A5BY TCGA-FD-A5BZ TCGA-FD-A62N TCGA-FD-A62P TCGA-FJ-A3Z7 
        5.36         6.84        27.45         2.66         6.28        15.19 
TCGA-FJ-A3ZF TCGA-FT-A61P TCGA-G2-A3IB TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3RC 
        4.08         6.48         7.04        20.12         0.85        15.91 
TCGA-GC-A3YS TCGA-GD-A2C5 TCGA-GD-A3OP TCGA-GD-A6C6 TCGA-GU-A42Q TCGA-GU-A42R 
        1.12         7.73         2.10         2.20         7.66        11.31 
TCGA-GV-A3JX TCGA-GV-A40G TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A6FZ 
        6.15        19.07         6.74         8.75         3.45         1.81 
TCGA-K4-A6MB TCGA-LC-A66R TCGA-LT-A5Z6 TCGA-MV-A51V TCGA-PQ-A6FI TCGA-PQ-A6FN 
        4.27         6.35         3.45        13.48        12.23        16.67 

$`22Q LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 TCGA-BT-A0YX 
       40.08         7.33         6.74        12.39         6.58        11.93 
TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q TCGA-BT-A20T TCGA-BT-A20U 
       32.84        12.16        17.88        19.50        14.89        14.96 
TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA TCGA-BT-A2LB TCGA-BT-A2LD 
        5.06         8.35         8.25        17.16         5.59         3.65 
TCGA-BT-A3PH TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS 
        4.67        12.82         2.07        23.01         0.46         0.43 
TCGA-CF-A27C TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V TCGA-CF-A47W TCGA-CF-A47Y 
        0.69         0.13         0.07         0.10         0.07         0.10 
TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A5 
        4.90         7.20        16.31         1.84         2.53         2.14 
TCGA-DK-A1A6 TCGA-DK-A1AA TCGA-DK-A1AB TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE 
       31.40        19.00         8.91       130.88       112.44        16.14 
TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2I6 TCGA-DK-A3IK TCGA-DK-A3IS TCGA-DK-A3IU 
       17.62        15.62        87.32         2.20        50.27        20.02 
TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY TCGA-DK-A3X1 TCGA-DK-A6AV TCGA-DK-A6AW 
        8.28        10.55       140.81        48.00        64.18        48.53 
TCGA-DK-A6B0 TCGA-DK-A6B6 TCGA-E5-A4U1 TCGA-E7-A3X6 TCGA-E7-A3Y1 TCGA-E7-A4IJ 
       64.64        21.24        26.17        24.66         0.10         0.49 
TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 TCGA-FD-A3B7 
        0.53         0.59         0.66         1.38         0.82         4.01 
TCGA-FD-A3B8 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SL TCGA-FD-A3SM TCGA-FD-A3SP 
       12.43        15.88        45.93        22.45        16.47        13.18 
TCGA-FD-A3SQ TCGA-FD-A43P TCGA-FD-A43S TCGA-FD-A43X TCGA-FD-A5BR TCGA-FD-A5BS 
       46.78        14.93        14.96         3.62        13.38        37.15 
TCGA-FD-A5BT TCGA-FD-A5BU TCGA-FD-A5BX TCGA-FD-A5C0 TCGA-FD-A5C1 TCGA-FD-A62O 
       11.01         6.87         5.69         6.87        49.68         4.83 
TCGA-FD-A62S TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FT-A3EE TCGA-G2-A2EF TCGA-G2-A2EJ 
        6.38         7.13         3.48         3.25        61.94        30.61 
TCGA-G2-A2EK TCGA-G2-A2EL TCGA-G2-A2EO TCGA-G2-A2ES TCGA-GC-A3BM TCGA-GC-A3I6 
        5.69        26.93        35.24        17.26         2.89         2.24 
TCGA-GC-A3OO TCGA-GC-A3RB TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GD-A3OQ TCGA-GD-A3OS 
       15.81         4.50        14.07        17.75         3.12        20.98 
TCGA-GU-A42P TCGA-GV-A3JV TCGA-GV-A3JW TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH 
        6.41         4.41         6.41         5.69         7.63         7.79 
TCGA-GV-A3QI TCGA-GV-A3QK TCGA-GV-A40E TCGA-H4-A2HO TCGA-K4-A3WV TCGA-K4-A4AB 
        4.14         6.67         6.41         1.51         4.67         2.50 
TCGA-K4-A4AC TCGA-K4-A54R 
        6.48        10.52 

  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              0.10               0.07 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
            123.85             140.81 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
             8.485              8.265 
[1] "0.1 - 123.8 (8.5)" "0.1 - 140.8 (8.3)"
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-BL-A0C8         TCGA-BL-A13I         TCGA-BL-A13J 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-BL-A3JM         TCGA-BL-A5ZZ         TCGA-BT-A0S7 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A0YX         TCGA-BT-A20J         TCGA-BT-A20N 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A20O         TCGA-BT-A20P         TCGA-BT-A20Q 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A20R         TCGA-BT-A20T         TCGA-BT-A20U 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A20V         TCGA-BT-A20W         TCGA-BT-A20X 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A2LA         TCGA-BT-A2LB         TCGA-BT-A2LD 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A3PH         TCGA-BT-A3PJ         TCGA-BT-A3PK 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-BT-A42E         TCGA-C4-A0EZ         TCGA-C4-A0F0 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-C4-A0F6         TCGA-CF-A1HR         TCGA-CF-A1HS 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CF-A27C         TCGA-CF-A47S         TCGA-CF-A47T 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-CF-A47V         TCGA-CF-A47W         TCGA-CF-A47X 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-CF-A47Y         TCGA-CU-A0YN         TCGA-CU-A0YO 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-CU-A0YR         TCGA-CU-A3KJ         TCGA-CU-A3QU 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-CU-A3YL         TCGA-CU-A5W6         TCGA-DK-A1A3 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1A5         TCGA-DK-A1A6         TCGA-DK-A1A7 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DK-A1AA         TCGA-DK-A1AB         TCGA-DK-A1AC 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1AD         TCGA-DK-A1AE         TCGA-DK-A1AF 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A1AG         TCGA-DK-A2HX         TCGA-DK-A2I1 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-DK-A2I2         TCGA-DK-A2I4         TCGA-DK-A2I6 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3IK         TCGA-DK-A3IL         TCGA-DK-A3IM 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-DK-A3IN         TCGA-DK-A3IQ         TCGA-DK-A3IS 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3IT         TCGA-DK-A3IU         TCGA-DK-A3IV 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DK-A3WW         TCGA-DK-A3WX         TCGA-DK-A3WY 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A3X1         TCGA-DK-A3X2         TCGA-DK-A6AV 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-DK-A6AW         TCGA-DK-A6B0         TCGA-DK-A6B1 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DK-A6B2         TCGA-DK-A6B5         TCGA-DK-A6B6 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-E5-A2PC         TCGA-E5-A4TZ         TCGA-E5-A4U1 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-E7-A3X6         TCGA-E7-A3Y1         TCGA-E7-A4IJ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-E7-A4XJ         TCGA-E7-A541         TCGA-E7-A5KE 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-E7-A5KF         TCGA-E7-A677         TCGA-E7-A678 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-E7-A7DV         TCGA-FD-A3B3         TCGA-FD-A3B4 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-FD-A3B5         TCGA-FD-A3B6         TCGA-FD-A3B7 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A3B8         TCGA-FD-A3N5         TCGA-FD-A3N6 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A3NA         TCGA-FD-A3SJ         TCGA-FD-A3SL 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A3SM         TCGA-FD-A3SN         TCGA-FD-A3SO 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-FD-A3SP         TCGA-FD-A3SQ         TCGA-FD-A3SR 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-FD-A3SS         TCGA-FD-A43N         TCGA-FD-A43P 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A43S         TCGA-FD-A43U         TCGA-FD-A43X 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A43Y         TCGA-FD-A5BR         TCGA-FD-A5BS 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FD-A5BT         TCGA-FD-A5BU         TCGA-FD-A5BV 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-FD-A5BX         TCGA-FD-A5BY         TCGA-FD-A5BZ 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-FD-A5C0         TCGA-FD-A5C1         TCGA-FD-A62N 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-FD-A62O         TCGA-FD-A62P         TCGA-FD-A62S 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-FJ-A3Z7         TCGA-FJ-A3Z9         TCGA-FJ-A3ZE 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FJ-A3ZF         TCGA-FT-A3EE         TCGA-FT-A61P 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-G2-A2EF         TCGA-G2-A2EJ         TCGA-G2-A2EK 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-G2-A2EL         TCGA-G2-A2EO         TCGA-G2-A2ES 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-G2-A3IB         TCGA-G2-A3IE         TCGA-G2-A3VY 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-GC-A3BM         TCGA-GC-A3I6         TCGA-GC-A3OO 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GC-A3RB         TCGA-GC-A3RC         TCGA-GC-A3RD 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-GC-A3WC         TCGA-GC-A3YS         TCGA-GD-A2C5 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-GD-A3OP         TCGA-GD-A3OQ         TCGA-GD-A3OS 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GD-A6C6         TCGA-GU-A42P         TCGA-GU-A42Q 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-GU-A42R         TCGA-GV-A3JV         TCGA-GV-A3JW 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GV-A3JX         TCGA-GV-A3JZ         TCGA-GV-A3QF 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GV-A3QH         TCGA-GV-A3QI         TCGA-GV-A3QK 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-GV-A40E         TCGA-GV-A40G         TCGA-H4-A2HO 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-H4-A2HQ         TCGA-K4-A3WS         TCGA-K4-A3WU 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-K4-A3WV         TCGA-K4-A4AB         TCGA-K4-A4AC 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-K4-A54R         TCGA-K4-A6FZ         TCGA-K4-A6MB 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-LC-A66R         TCGA-LT-A5Z6         TCGA-MV-A51V 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-PQ-A6FI         TCGA-PQ-A6FN 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
[1] "hr=" "1.2"
D79V2, continuous
                    vv
clus                 STAGE I STAGE II STAGE III STAGE IV
  22Q LOSS MUTATED         0       19        24       30
  22Q LOSS WILD-TYPE       2       46        42       28
D79V3, multiclass
           clus
vv          22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  STAGE I                  0                  2
  STAGE II                19                 46
  STAGE III               24                 42
  STAGE IV                30                 28
                    vv
clus                 T0+T1+T2 T3 T4
  22Q LOSS MUTATED         17 34 14
  22Q LOSS WILD-TYPE       42 56 14
D79V4, multiclass
          clus
vv         22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  T0+T1+T2               17                 42
  T3                     34                 56
  T4                     14                 14
                    vv
clus                 N0 N1 N2 N3
  22Q LOSS MUTATED   38 10 15  3
  22Q LOSS WILD-TYPE 82  8 18  4
D79V5, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  N0               38                 82
  N1               10                  8
  N2               15                 18
  N3                3                  4
                    vv
clus                 M0 M1 MX
  22Q LOSS MUTATED   29  2 41
  22Q LOSS WILD-TYPE 74  3 45
D79V6, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  M0               29                 74
  M1                2                  3
  MX               41                 45
D79V7, binary
                    cls
clus                  0  1
  22Q LOSS MUTATED   19 54
  22Q LOSS WILD-TYPE 29 93
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED     19   54
  22Q LOSS WILD-TYPE   29   93
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  FEMALE               19                 29
  MALE                 54                 93
D79V8, continuous
D79V9, continuous
D79V10, continuous
D79V11, continuous

Clustering(80) Variable = XQ LOSS MUTATION ANALYSIS
D80V1, survival
                   sevent
clus2                 0   1
  XQ LOSS MUTATED    26   9
  XQ LOSS WILD-TYPE 106  47
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               35               153 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                9                47 
$`XQ LOSS MUTATED`
TCGA-BT-A20T TCGA-BT-A2LB TCGA-BT-A3PH TCGA-CF-A27C TCGA-CF-A47X TCGA-CU-A3QU 
       14.89         5.59         4.67         0.69         0.10         5.19 
TCGA-DK-A1A5 TCGA-DK-A1AB TCGA-DK-A2I6 TCGA-DK-A3IS TCGA-DK-A3IT TCGA-DK-A3IV 
        2.14         8.91        87.32        50.27        21.30         9.67 
TCGA-DK-A6B5 TCGA-E5-A2PC TCGA-E7-A3X6 TCGA-FD-A3B4 TCGA-FD-A3SN TCGA-FD-A3SR 
       32.28        43.59        24.66        15.68        12.82        19.79 
TCGA-FD-A3SS TCGA-FD-A5BY TCGA-FD-A62N TCGA-FJ-A3Z7 TCGA-G2-A2EL TCGA-G2-A3IB 
        1.97         6.84         2.66        15.19        26.93         7.04 
TCGA-GD-A6C6 TCGA-GU-A42P TCGA-GU-A42R TCGA-GV-A3JX TCGA-GV-A3QI TCGA-GV-A40G 
        2.20         6.41        11.31         6.15         4.14        19.07 
TCGA-K4-A3WV TCGA-K4-A54R TCGA-K4-A6FZ TCGA-LT-A5Z6 TCGA-PQ-A6FI 
        4.67        10.52         1.81         3.45        12.23 

$`XQ LOSS WILD-TYPE`
TCGA-BL-A0C8 TCGA-BL-A13I TCGA-BL-A13J TCGA-BL-A3JM TCGA-BL-A5ZZ TCGA-BT-A0S7 
       40.08         7.33         2.66         6.74        12.39         6.58 
TCGA-BT-A0YX TCGA-BT-A20J TCGA-BT-A20N TCGA-BT-A20O TCGA-BT-A20P TCGA-BT-A20Q 
       11.93        19.04        32.84        12.16        17.88        19.50 
TCGA-BT-A20R TCGA-BT-A20U TCGA-BT-A20V TCGA-BT-A20W TCGA-BT-A20X TCGA-BT-A2LA 
        5.06        14.96         5.06         8.35         8.25        17.16 
TCGA-BT-A2LD TCGA-BT-A3PJ TCGA-BT-A3PK TCGA-BT-A42E TCGA-C4-A0EZ TCGA-C4-A0F0 
        3.65        12.82         2.07         9.99         8.98         1.94 
TCGA-C4-A0F6 TCGA-CF-A1HR TCGA-CF-A1HS TCGA-CF-A47S TCGA-CF-A47T TCGA-CF-A47V 
       23.01         0.46         0.43         0.13         0.07         0.10 
TCGA-CF-A47W TCGA-CF-A47Y TCGA-CU-A0YN TCGA-CU-A0YO TCGA-CU-A0YR TCGA-CU-A3KJ 
        0.07         0.10        12.92         4.90         7.20         5.46 
TCGA-CU-A3YL TCGA-CU-A5W6 TCGA-DK-A1A3 TCGA-DK-A1A6 TCGA-DK-A1A7 TCGA-DK-A1AA 
       16.31         1.84         2.53        31.40        18.41        19.00 
TCGA-DK-A1AC TCGA-DK-A1AD TCGA-DK-A1AE TCGA-DK-A1AF TCGA-DK-A1AG TCGA-DK-A2HX 
      130.88       112.44        16.14        17.62        15.62         1.81 
TCGA-DK-A2I1 TCGA-DK-A2I2 TCGA-DK-A2I4 TCGA-DK-A3IK TCGA-DK-A3IL TCGA-DK-A3IM 
       10.59         7.79       123.85         2.20         3.98         7.82 
TCGA-DK-A3IN TCGA-DK-A3IQ TCGA-DK-A3IU TCGA-DK-A3WW TCGA-DK-A3WX TCGA-DK-A3WY 
        8.22        10.49        20.02         8.28        10.55       140.81 
TCGA-DK-A3X1 TCGA-DK-A3X2 TCGA-DK-A6AV TCGA-DK-A6AW TCGA-DK-A6B0 TCGA-DK-A6B1 
       48.00        17.98        64.18        48.53        64.64        67.36 
TCGA-DK-A6B2 TCGA-DK-A6B6 TCGA-E5-A4TZ TCGA-E5-A4U1 TCGA-E7-A3Y1 TCGA-E7-A4IJ 
       15.68        21.24        15.35        26.17         0.10         0.49 
TCGA-E7-A4XJ TCGA-E7-A541 TCGA-E7-A5KE TCGA-E7-A5KF TCGA-E7-A677 TCGA-E7-A678 
        0.53         0.59         0.56         0.66         1.38         0.82 
TCGA-E7-A7DV TCGA-FD-A3B3 TCGA-FD-A3B5 TCGA-FD-A3B6 TCGA-FD-A3B7 TCGA-FD-A3B8 
        1.22        12.89         8.94         6.87         4.01        12.43 
TCGA-FD-A3N5 TCGA-FD-A3N6 TCGA-FD-A3NA TCGA-FD-A3SJ TCGA-FD-A3SL TCGA-FD-A3SM 
       11.93        15.88        45.93        24.30        22.45        16.47 
TCGA-FD-A3SO TCGA-FD-A3SP TCGA-FD-A3SQ TCGA-FD-A43N TCGA-FD-A43P TCGA-FD-A43S 
        5.52        13.18        46.78        22.98        14.93        14.96 
TCGA-FD-A43U TCGA-FD-A43X TCGA-FD-A43Y TCGA-FD-A5BR TCGA-FD-A5BS TCGA-FD-A5BT 
       14.93         3.62        12.13        13.38        37.15        11.01 
TCGA-FD-A5BU TCGA-FD-A5BV TCGA-FD-A5BX TCGA-FD-A5BZ TCGA-FD-A5C0 TCGA-FD-A5C1 
        6.87         5.36         5.69        27.45         6.87        49.68 
TCGA-FD-A62O TCGA-FD-A62P TCGA-FD-A62S TCGA-FJ-A3Z9 TCGA-FJ-A3ZE TCGA-FJ-A3ZF 
        4.83         6.28         6.38         7.13         3.48         4.08 
TCGA-FT-A3EE TCGA-FT-A61P TCGA-G2-A2EF TCGA-G2-A2EJ TCGA-G2-A2EK TCGA-G2-A2EO 
        3.25         6.48        61.94        30.61         5.69        35.24 
TCGA-G2-A2ES TCGA-G2-A3IE TCGA-G2-A3VY TCGA-GC-A3BM TCGA-GC-A3I6 TCGA-GC-A3OO 
       17.26        20.12         0.85         2.89         2.24        15.81 
TCGA-GC-A3RB TCGA-GC-A3RC TCGA-GC-A3RD TCGA-GC-A3WC TCGA-GC-A3YS TCGA-GD-A2C5 
        4.50        15.91        14.07        17.75         1.12         7.73 
TCGA-GD-A3OP TCGA-GD-A3OQ TCGA-GD-A3OS TCGA-GU-A42Q TCGA-GV-A3JV TCGA-GV-A3JW 
        2.10         3.12        20.98         7.66         4.41         6.41 
TCGA-GV-A3JZ TCGA-GV-A3QF TCGA-GV-A3QH TCGA-GV-A3QK TCGA-GV-A40E TCGA-H4-A2HO 
        5.69         7.63         7.79         6.67         6.41         1.51 
TCGA-H4-A2HQ TCGA-K4-A3WS TCGA-K4-A3WU TCGA-K4-A4AB TCGA-K4-A4AC TCGA-K4-A6MB 
        6.74         8.75         3.45         2.50         6.48         4.27 
TCGA-LC-A66R TCGA-MV-A51V TCGA-PQ-A6FN 
        6.35        13.48        16.67 

  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
             0.10              0.07 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
            87.32            140.81 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
             8.91              8.25 
[1] "0.1 - 87.3 (8.9)"  "0.1 - 140.8 (8.2)"
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-BL-A0C8        TCGA-BL-A13I        TCGA-BL-A13J        TCGA-BL-A3JM 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BL-A5ZZ        TCGA-BT-A0S7        TCGA-BT-A0YX        TCGA-BT-A20J 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A20N        TCGA-BT-A20O        TCGA-BT-A20P        TCGA-BT-A20Q 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A20R        TCGA-BT-A20T        TCGA-BT-A20U        TCGA-BT-A20V 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A20W        TCGA-BT-A20X        TCGA-BT-A2LA        TCGA-BT-A2LB 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-BT-A2LD        TCGA-BT-A3PH        TCGA-BT-A3PJ        TCGA-BT-A3PK 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BT-A42E        TCGA-C4-A0EZ        TCGA-C4-A0F0        TCGA-C4-A0F6 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CF-A1HR        TCGA-CF-A1HS        TCGA-CF-A27C        TCGA-CF-A47S 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-CF-A47T        TCGA-CF-A47V        TCGA-CF-A47W        TCGA-CF-A47X 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-CF-A47Y        TCGA-CU-A0YN        TCGA-CU-A0YO        TCGA-CU-A0YR 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-CU-A3KJ        TCGA-CU-A3QU        TCGA-CU-A3YL        TCGA-CU-A5W6 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A1A3        TCGA-DK-A1A5        TCGA-DK-A1A6        TCGA-DK-A1A7 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A1AA        TCGA-DK-A1AB        TCGA-DK-A1AC        TCGA-DK-A1AD 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A1AE        TCGA-DK-A1AF        TCGA-DK-A1AG        TCGA-DK-A2HX 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A2I1        TCGA-DK-A2I2        TCGA-DK-A2I4        TCGA-DK-A2I6 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-DK-A3IK        TCGA-DK-A3IL        TCGA-DK-A3IM        TCGA-DK-A3IN 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A3IQ        TCGA-DK-A3IS        TCGA-DK-A3IT        TCGA-DK-A3IU 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A3IV        TCGA-DK-A3WW        TCGA-DK-A3WX        TCGA-DK-A3WY 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A3X1        TCGA-DK-A3X2        TCGA-DK-A6AV        TCGA-DK-A6AW 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DK-A6B0        TCGA-DK-A6B1        TCGA-DK-A6B2        TCGA-DK-A6B5 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-DK-A6B6        TCGA-E5-A2PC        TCGA-E5-A4TZ        TCGA-E5-A4U1 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-E7-A3X6        TCGA-E7-A3Y1        TCGA-E7-A4IJ        TCGA-E7-A4XJ 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-E7-A541        TCGA-E7-A5KE        TCGA-E7-A5KF        TCGA-E7-A677 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-E7-A678        TCGA-E7-A7DV        TCGA-FD-A3B3        TCGA-FD-A3B4 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-FD-A3B5        TCGA-FD-A3B6        TCGA-FD-A3B7        TCGA-FD-A3B8 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3N5        TCGA-FD-A3N6        TCGA-FD-A3NA        TCGA-FD-A3SJ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3SL        TCGA-FD-A3SM        TCGA-FD-A3SN        TCGA-FD-A3SO 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A3SP        TCGA-FD-A3SQ        TCGA-FD-A3SR        TCGA-FD-A3SS 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-FD-A43N        TCGA-FD-A43P        TCGA-FD-A43S        TCGA-FD-A43U 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A43X        TCGA-FD-A43Y        TCGA-FD-A5BR        TCGA-FD-A5BS 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A5BT        TCGA-FD-A5BU        TCGA-FD-A5BV        TCGA-FD-A5BX 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A5BY        TCGA-FD-A5BZ        TCGA-FD-A5C0        TCGA-FD-A5C1 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FD-A62N        TCGA-FD-A62O        TCGA-FD-A62P        TCGA-FD-A62S 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FJ-A3Z7        TCGA-FJ-A3Z9        TCGA-FJ-A3ZE        TCGA-FJ-A3ZF 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FT-A3EE        TCGA-FT-A61P        TCGA-G2-A2EF        TCGA-G2-A2EJ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-G2-A2EK        TCGA-G2-A2EL        TCGA-G2-A2EO        TCGA-G2-A2ES 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-G2-A3IB        TCGA-G2-A3IE        TCGA-G2-A3VY        TCGA-GC-A3BM 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GC-A3I6        TCGA-GC-A3OO        TCGA-GC-A3RB        TCGA-GC-A3RC 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GC-A3RD        TCGA-GC-A3WC        TCGA-GC-A3YS        TCGA-GD-A2C5 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GD-A3OP        TCGA-GD-A3OQ        TCGA-GD-A3OS        TCGA-GD-A6C6 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-GU-A42P        TCGA-GU-A42Q        TCGA-GU-A42R        TCGA-GV-A3JV 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-GV-A3JW        TCGA-GV-A3JX        TCGA-GV-A3JZ        TCGA-GV-A3QF 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GV-A3QH        TCGA-GV-A3QI        TCGA-GV-A3QK        TCGA-GV-A40E 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-GV-A40G        TCGA-H4-A2HO        TCGA-H4-A2HQ        TCGA-K4-A3WS 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-K4-A3WU        TCGA-K4-A3WV        TCGA-K4-A4AB        TCGA-K4-A4AC 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-K4-A54R        TCGA-K4-A6FZ        TCGA-K4-A6MB        TCGA-LC-A66R 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-LT-A5Z6        TCGA-MV-A51V        TCGA-PQ-A6FI        TCGA-PQ-A6FN 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D80V2, continuous
                   vv
clus                STAGE I STAGE II STAGE III STAGE IV
  XQ LOSS MUTATED         0       15         9       12
  XQ LOSS WILD-TYPE       2       50        57       46
D80V3, multiclass
           clus
vv          XQ LOSS MUTATED XQ LOSS WILD-TYPE
  STAGE I                 0                 2
  STAGE II               15                50
  STAGE III               9                57
  STAGE IV               12                46
                   vv
clus                T0+T1+T2 T3 T4
  XQ LOSS MUTATED         14 13  6
  XQ LOSS WILD-TYPE       45 77 22
D80V4, multiclass
          clus
vv         XQ LOSS MUTATED XQ LOSS WILD-TYPE
  T0+T1+T2              14                45
  T3                    13                77
  T4                     6                22
                   vv
clus                N0 N1 N2 N3
  XQ LOSS MUTATED   21  5  5  1
  XQ LOSS WILD-TYPE 99 13 28  6
D80V5, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  N0              21                99
  N1               5                13
  N2               5                28
  N3               1                 6
                   vv
clus                M0 M1 MX
  XQ LOSS MUTATED   17  0 21
  XQ LOSS WILD-TYPE 86  5 65
D80V6, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  M0              17                86
  M1               0                 5
  MX              21                65
D80V7, binary
                   cls
clus                  0   1
  XQ LOSS MUTATED     7  31
  XQ LOSS WILD-TYPE  41 116
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      7   31
  XQ LOSS WILD-TYPE   41  116
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  FEMALE               7                41
  MALE                31               116
D80V8, continuous
D80V9, continuous
D80V10, continuous
D80V11, continuous
> q(save="no")
