		Clinical Features	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	53 (21%)	197	0.00019563	0.151	0.053939	1	0.5103	1	0.51093	1	0.61066	1	1	1	0.86888	1	0.94063	1	0.75103	1	0.93088	1
1q gain	78 (31%)	172	0.0023679	1	0.31868	1	0.5703	1	0.71423	1	0.75332	1	0.93833	1	0.82626	1	0.62652	1	0.4658	1	0.9706	1
2p gain	73 (29%)	177	4.1271e-05	0.0321	0.00088171	0.667	0.39443	1	0.7827	1	0.31945	1	0.26217	1	0.12911	1	0.12718	1	0.32004	1	0.0043932	1
2q gain	34 (14%)	216	0.037236	1	0.073852	1	0.52925	1	0.7019	1	0.86205	1	0.75203	1	0.63082	1	0.4631	1	0.94492	1	0.34915	1
3p gain	89 (36%)	161	5.509e-06	0.00435	0.11218	1	0.1049	1	0.31096	1	0.0084893	1	0.045186	1	0.0013727	1	0.027791	1	0.0032645	1	0.0087368	1
3q gain	112 (45%)	138	0.00027364	0.21	0.71191	1	0.43085	1	0.9262	1	0.14657	1	0.082385	1	0.0018975	1	0.0032709	1	0.0013545	1	0.0010231	0.773
4p gain	31 (12%)	219	0.061493	1	0.010915	1	0.47848	1	0.65503	1	0.037407	1	0.026593	1	0.17828	1	0.2383	1	0.18105	1	0.006028	1
4q gain	18 (7%)	232	0.056614	1	0.051378	1	0.56884	1	0.16106	1	0.048037	1	0.060185	1	0.25253	1	0.33592	1	0.46807	1	0.42048	1
5p gain	103 (41%)	147	2.7263e-05	0.0213	0.59873	1	0.042189	1	0.23652	1	0.29037	1	0.018269	1	0.13813	1	0.031236	1	0.26305	1	0.031275	1
5q gain	36 (14%)	214	0.0043303	1	0.20743	1	0.017213	1	0.6593	1	0.63968	1	0.67321	1	0.11511	1	0.054861	1	0.031936	1	0.29026	1
6p gain	40 (16%)	210	0.069455	1	0.75992	1	0.78563	1	0.17723	1	0.34923	1	0.50338	1	0.52972	1	0.053595	1	0.69612	1	0.65949	1
6q gain	22 (9%)	228	0.34624	1	0.6738	1	0.93387	1	0.10051	1	0.13781	1	0.2882	1	0.29976	1	0.095179	1	0.51339	1	0.70703	1
7p gain	108 (43%)	142	0.00021316	0.164	0.023436	1	0.023214	1	0.8579	1	0.8397	1	0.4105	1	0.069903	1	0.08106	1	0.3766	1	0.3853	1
7q gain	96 (38%)	154	0.0012529	0.942	0.038842	1	0.18279	1	0.91694	1	0.67812	1	0.37392	1	0.14405	1	0.044719	1	0.30787	1	0.30327	1
8p gain	51 (20%)	199	1.4278e-06	0.00113	0.034663	1	0.052866	1	0.060078	1	0.49262	1	0.32376	1	0.7326	1	0.33274	1	0.52724	1	0.21646	1
8q gain	111 (44%)	139	0.0074178	1	0.10828	1	0.050441	1	0.15862	1	0.75162	1	0.75856	1	0.69514	1	0.86152	1	0.43631	1	0.14448	1
9p gain	37 (15%)	213	1.8625e-05	0.0146	0.7907	1	0.63054	1	0.61448	1	0.12921	1	0.019881	1	0.3456	1	1	1	0.93925	1	0.52777	1
9q gain	32 (13%)	218	0.057461	1	0.03531	1	0.77611	1	0.031492	1	0.0047321	1	0.0036943	1	0.90879	1	0.53184	1	0.52026	1	0.084541	1
10p gain	74 (30%)	176	1.2023e-09	9.62e-07	0.59107	1	0.80393	1	0.58579	1	0.90496	1	0.21592	1	0.52364	1	0.52742	1	0.96581	1	0.90192	1
10q gain	23 (9%)	227	0.023773	1	0.44192	1	0.43593	1	0.32207	1	0.802	1	0.1459	1	0.2661	1	1	1	0.56426	1	0.87067	1
11p gain	23 (9%)	227	0.027513	1	0.16656	1	0.18064	1	0.094687	1	0.057037	1	0.036158	1	0.66082	1	0.30358	1	0.49505	1	0.052935	1
11q gain	33 (13%)	217	0.024283	1	0.13596	1	0.15168	1	0.016144	1	0.14848	1	0.033109	1	0.92734	1	0.4631	1	0.43011	1	0.039175	1
12p gain	73 (29%)	177	0.0026888	1	0.16894	1	0.67651	1	0.41252	1	0.93384	1	1	1	1	1	0.014365	1	0.97543	1	0.21569	1
12q gain	52 (21%)	198	0.0074535	1	0.045913	1	0.099148	1	0.024059	1	0.18992	1	0.26389	1	0.40635	1	0.11759	1	0.48217	1	0.081948	1
13q gain	64 (26%)	186	0.10075	1	0.73937	1	0.9658	1	0.84988	1	0.1395	1	0.90093	1	0.66863	1	0.52304	1	1	1	0.53781	1
14q gain	41 (16%)	209	0.004339	1	0.080013	1	0.36381	1	0.52524	1	0.043307	1	0.026593	1	0.90143	1	0.42968	1	0.5183	1	0.96172	1
15q gain	23 (9%)	227	0.50107	1	0.011885	1	0.5764	1	0.39613	1	0.93007	1	0.23052	1	0.37271	1	0.82076	1	1	1	1	1
16p gain	42 (17%)	208	0.0060264	1	0.90106	1	0.2808	1	0.63574	1	0.89374	1	0.40447	1	0.44581	1	0.73044	1	0.5284	1	1	1
16q gain	51 (20%)	199	0.0098823	1	0.44051	1	0.098604	1	0.43829	1	0.44668	1	0.080871	1	0.32423	1	1	1	0.16942	1	0.53449	1
17p gain	34 (14%)	216	0.021242	1	0.06591	1	0.47539	1	0.71398	1	0.85272	1	0.42481	1	0.0012465	0.939	0.00018673	0.144	0.0032083	1	0.00050548	0.385
17q gain	84 (34%)	166	0.018089	1	0.0085355	1	0.45107	1	0.52831	1	0.24261	1	0.19493	1	0.074783	1	0.0105	1	0.0048637	1	0.013997	1
18p gain	76 (30%)	174	5.8264e-09	4.66e-06	0.003863	1	0.93523	1	0.82409	1	0.10235	1	0.059125	1	0.68804	1	0.034913	1	0.61054	1	0.97853	1
18q gain	39 (16%)	211	0.00030561	0.234	0.0064778	1	0.44039	1	0.23598	1	0.60628	1	0.21434	1	0.67865	1	0.25105	1	0.50741	1	0.88646	1
19p gain	49 (20%)	201	0.26915	1	0.1213	1	0.28592	1	0.56501	1	0.057527	1	0.15009	1	0.19674	1	0.040511	1	0.57738	1	0.19381	1
19q gain	84 (34%)	166	0.0008523	0.646	0.048627	1	0.29433	1	0.66619	1	0.39048	1	0.2115	1	0.33422	1	0.043874	1	0.79595	1	0.37501	1
20p gain	126 (50%)	124	0.0048313	1	0.030934	1	0.51615	1	0.043306	1	0.83372	1	0.090762	1	0.088345	1	0.14026	1	0.008779	1	0.10964	1
20q gain	140 (56%)	110	0.00079943	0.607	0.057861	1	0.37404	1	0.1527	1	1	1	0.20831	1	0.060728	1	0.02884	1	0.043	1	0.30164	1
21q gain	75 (30%)	175	5.0457e-05	0.0392	0.024014	1	0.6136	1	0.56751	1	0.096354	1	0.065153	1	0.00041037	0.314	0.000199	0.153	0.017566	1	0.0025862	1
22q gain	35 (14%)	215	7.9192e-05	0.0613	0.0031182	1	0.47537	1	0.61956	1	0.041552	1	0.15005	1	0.2	1	0.23152	1	0.58127	1	0.35755	1
xq gain	30 (12%)	220	0.10314	1	0.084791	1	0.40091	1	0.84757	1	0.73813	1	0.43438	1	0.44482	1	1	1	0.62271	1	0.60029	1
1p loss	20 (8%)	230	0.020273	1	1	1	0.13931	1	0.11778	1	0.802	1	0.1459	1	0.43712	1	0.15706	1	0.92129	1	0.69413	1
1q loss	22 (9%)	228	0.003316	1	0.91482	1	0.56914	1	1	1	0.63954	1	0.14545	1	0.6009	1	0.54145	1	0.82721	1	0.91948	1
2p loss	25 (10%)	225	0.0051831	1	0.12256	1	0.84127	1	0.75914	1	0.76965	1	0.20243	1	0.20276	1	0.57228	1	0.46283	1	0.28399	1
2q loss	57 (23%)	193	2.4031e-05	0.0188	0.038103	1	0.60206	1	0.30838	1	0.18456	1	0.068993	1	0.65338	1	0.3278	1	0.16811	1	0.034073	1
3p loss	29 (12%)	221	0.0023732	1	0.061541	1	0.052267	1	0.017512	1	2.1304e-06	0.00169	1.3324e-05	0.0105	0.67103	1	0.45401	1	0.26812	1	0.011695	1
3q loss	13 (5%)	237	0.12595	1	0.30806	1	0.0015852	1	0.012318	1	0.026157	1	0.020493	1	1	1	1	1	0.90126	1	0.18533	1
4p loss	84 (34%)	166	0.00011419	0.0883	0.45047	1	0.57059	1	0.4469	1	0.072039	1	0.039002	1	0.11893	1	0.70645	1	0.16004	1	0.043255	1
4q loss	86 (34%)	164	6.1289e-06	0.00483	0.17544	1	0.19386	1	0.25037	1	0.069181	1	0.053324	1	0.22178	1	0.43414	1	0.092554	1	0.032603	1
5p loss	39 (16%)	211	0.64155	1	0.71639	1	0.3905	1	0.60205	1	0.87409	1	0.19066	1	0.84859	1	0.85979	1	0.5409	1	0.75175	1
5q loss	100 (40%)	150	0.0010408	0.786	0.19214	1	0.82414	1	0.2922	1	0.098571	1	0.0038573	1	0.93463	1	0.54019	1	0.49301	1	0.32067	1
6p loss	61 (24%)	189	0.096394	1	0.00062926	0.478	0.76575	1	0.83549	1	0.2389	1	0.0073822	1	0.62482	1	0.75743	1	0.70308	1	0.11508	1
6q loss	93 (37%)	157	1.8598e-06	0.00147	0.00042107	0.322	0.83686	1	0.55942	1	0.54479	1	0.012128	1	0.79862	1	0.71055	1	0.89615	1	0.3986	1
7p loss	10 (4%)	240	0.68752	1	0.77199	1	0.38457	1	0.92436	1	1	1	0.64516	1	0.41719	1	0.013774	1	0.27892	1	0.82962	1
7q loss	15 (6%)	235	0.2455	1	0.79975	1	0.31231	1	0.83346	1	0.94298	1	0.90073	1	0.38833	1	0.0012748	0.957	1	1	0.93807	1
8p loss	113 (45%)	137	1.4856e-07	0.000118	0.10357	1	0.13643	1	0.072736	1	0.038719	1	0.018678	1	0.0083144	1	0.03551	1	0.05037	1	0.0059504	1
8q loss	27 (11%)	223	0.42386	1	0.26953	1	0.33332	1	0.016695	1	0.054177	1	0.042897	1	0.0088055	1	0.42566	1	0.0097109	1	0.0032188	1
9p loss	109 (44%)	141	3.3021e-05	0.0257	0.20122	1	0.28284	1	0.075235	1	0.69026	1	0.021777	1	0.83499	1	0.20195	1	0.78239	1	0.94683	1
9q loss	99 (40%)	151	0.16073	1	0.0063516	1	0.031935	1	0.0070133	1	0.029792	1	2.3851e-05	0.0187	1	1	0.75639	1	0.4707	1	0.50928	1
10p loss	46 (18%)	204	0.00049214	0.375	0.016045	1	0.78813	1	0.50973	1	0.039972	1	0.092496	1	0.08383	1	0.041562	1	0.28601	1	0.12006	1
10q loss	83 (33%)	167	6.4738e-06	0.00509	0.0022242	1	0.47855	1	0.7918	1	0.11172	1	0.22214	1	0.29029	1	0.32205	1	0.29113	1	0.43177	1
11p loss	104 (42%)	146	2.3891e-06	0.00189	3.546e-07	0.000282	0.25041	1	0.5163	1	0.013985	1	0.0011765	0.887	0.038341	1	0.090357	1	0.0046913	1	0.031138	1
11q loss	77 (31%)	173	8.5732e-06	0.00674	2.9338e-05	0.0229	0.068598	1	0.069793	1	0.041385	1	0.037332	1	0.3302	1	0.2097	1	0.084896	1	0.070458	1
12p loss	25 (10%)	225	0.057299	1	0.15693	1	0.87047	1	0.40987	1	0.57736	1	0.65368	1	0.40684	1	0.61406	1	0.75206	1	0.9418	1
12q loss	32 (13%)	218	0.047747	1	0.83752	1	0.33332	1	0.54173	1	0.72122	1	0.29605	1	0.72328	1	0.69123	1	0.85555	1	0.81826	1
13q loss	53 (21%)	197	0.0002714	0.208	0.41214	1	0.0057349	1	0.029168	1	0.087847	1	0.56482	1	0.90054	1	0.35964	1	0.9711	1	0.25929	1
14q loss	74 (30%)	176	3.9303e-07	0.000312	0.11172	1	0.1183	1	0.04804	1	0.068327	1	0.00046775	0.357	0.0088847	1	0.073881	1	0.010907	1	0.40637	1
15q loss	85 (34%)	165	7.0976e-05	0.055	0.0032998	1	0.099887	1	0.28902	1	0.13853	1	0.015227	1	0.085301	1	0.052355	1	0.046829	1	0.44032	1
16p loss	64 (26%)	186	5.4577e-08	4.35e-05	0.092695	1	0.57474	1	0.39261	1	0.25066	1	0.83125	1	0.93513	1	0.53702	1	0.46857	1	0.9159	1
16q loss	58 (23%)	192	9.0583e-09	7.23e-06	0.03425	1	0.2372	1	0.91196	1	0.86707	1	0.91543	1	0.73056	1	0.44715	1	0.73858	1	0.37233	1
17p loss	109 (44%)	141	0.06221	1	0.25931	1	0.94721	1	0.36173	1	0.26267	1	0.69676	1	0.38097	1	0.43648	1	0.29103	1	0.077917	1
17q loss	27 (11%)	223	0.68346	1	0.16488	1	0.89605	1	0.7828	1	0.68117	1	0.74756	1	0.79081	1	0.33864	1	0.81423	1	0.60575	1
18p loss	57 (23%)	193	0.019267	1	0.56902	1	0.45951	1	0.27403	1	0.83568	1	0.25482	1	0.51699	1	0.16243	1	0.61866	1	0.31775	1
18q loss	86 (34%)	164	0.0036452	1	0.73685	1	0.54794	1	0.84045	1	0.75031	1	0.93182	1	0.042887	1	0.017243	1	0.040488	1	0.34814	1
19p loss	64 (26%)	186	0.043332	1	0.42367	1	0.68027	1	0.40403	1	0.019005	1	0.068783	1	1	1	0.49803	1	0.67217	1	0.29877	1
19q loss	39 (16%)	211	0.2084	1	0.88351	1	0.20763	1	0.1008	1	0.25131	1	0.44757	1	0.22833	1	0.67762	1	0.29093	1	0.16869	1
20p loss	20 (8%)	230	0.14416	1	0.15393	1	0.25852	1	0.035186	1	0.9182	1	0.43708	1	0.83858	1	1	1	0.28562	1	0.48278	1
20q loss	8 (3%)	242	0.41001	1	0.71628	1	0.33077	1	0.28698	1	0.55736	1	0.79078	1	0.59263	1	0.80863	1	1	1	0.44005	1
21q loss	41 (16%)	209	0.47863	1	0.52698	1	0.11418	1	0.18894	1	0.0093637	1	0.11577	1	0.56728	1	0.24444	1	0.65255	1	0.1806	1
22q loss	97 (39%)	153	1.5988e-05	0.0125	0.0066964	1	0.54841	1	0.015487	1	0.0067619	1	0.013059	1	0.71564	1	0.55561	1	0.060838	1	0.058597	1
xq loss	48 (19%)	202	0.0017455	1	0.025457	1	0.98127	1	1	1	0.15546	1	0.47073	1	0.082221	1	0.72935	1	0.036079	1	0.16707	1
