
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_TopgenesforCluster/broadinstitute.org/cancer.genome.analysis/00205/39/Topgenes_v1.R")
> result <- main("-s/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_TopgenesforCluster/broadinstitute.org/cancer.genome.analysis/00205/39/", "-m/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MethylationPreprocess/BRCA-TP/8104417/BRCA-TP.meth.by_max_stddev.data.txt", "-u4951", "-oBRCA-TP")
Cluster size 4951 broken into 1598 3353 
Cluster size 1598 broken into 809 789 
Done cluster 809 
Done cluster 789 
Done cluster 1598 
Cluster size 3353 broken into 2098 1255 
Cluster size 2098 broken into 1025 1073 
Done cluster 1025 
Done cluster 1073 
Done cluster 2098 
Done cluster 1255 
Done cluster 3353 
> q(save="no")
