
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/CESC-TP/8278704/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/CESC-TP/8142755/CESC-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=CESC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=CESC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/CESC-TP/8142755/CESC-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/CESC-TP/8278704/transformed.cor.cli.txt"

nPatients in clinical file=160, in cluster file=192, common to both=150
[1]  80 150
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               45               105 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               45               105 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               73                77 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               73                77 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               26               124 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               26               124 
[1] "2Q GAIN MUTATION ANALYSIS"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               18               132 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               18               132 
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               37               113 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               37               113 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               89                61 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               89                61 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                3               147 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                3               147 
[1] "4Q GAIN MUTATION ANALYSIS"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                4               146 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                4               146 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               51                99 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               51                99 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               22               128 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               22               128 
[1] "6P GAIN MUTATION ANALYSIS"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               31               119 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               31               119 
[1] "6Q GAIN MUTATION ANALYSIS"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               17               133 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               17               133 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               16               134 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               16               134 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               15               135 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               15               135 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               24               126 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               24               126 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               41               109 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               41               109 
[1] "9P GAIN MUTATION ANALYSIS"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               18               132 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               18               132 
[1] "9Q GAIN MUTATION ANALYSIS"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               20               130 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               20               130 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                11                139 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                11                139 
[1] "10Q GAIN MUTATION ANALYSIS"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 6                144 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 6                144 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 4                146 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 4                146 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 4                146 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 4                146 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                22                128 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                22                128 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                22                128 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                22                128 
[1] "13Q GAIN MUTATION ANALYSIS"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                13                137 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                13                137 
[1] "14Q GAIN MUTATION ANALYSIS"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                21                129 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                21                129 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                23                127 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                23                127 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                20                130 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                20                130 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                17                133 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                17                133 
[1] "17P GAIN MUTATION ANALYSIS"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                11                139 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                11                139 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                21                129 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                21                129 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                18                132 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                18                132 
[1] "18Q GAIN MUTATION ANALYSIS"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 8                142 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 8                142 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                21                129 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                21                129 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                32                118 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                32                118 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                48                102 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                48                102 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                54                 96 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                54                 96 
[1] "21Q GAIN MUTATION ANALYSIS"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                19                131 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                19                131 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                18                132 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                18                132 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               19               131 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               19               131 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                6               144 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                6               144 
[1] "1Q LOSS MUTATION ANALYSIS"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                6               144 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                6               144 
[1] "2P LOSS MUTATION ANALYSIS"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                8               142 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                8               142 
[1] "2Q LOSS MUTATION ANALYSIS"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               15               135 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               15               135 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               39               111 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               39               111 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                5               145 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                5               145 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               62                88 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               62                88 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               40               110 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               40               110 
[1] "5P LOSS MUTATION ANALYSIS"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               12               138 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               12               138 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               32               118 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               32               118 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               19               131 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               19               131 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               35               115 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               35               115 
[1] "7P LOSS MUTATION ANALYSIS"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               16               134 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               16               134 
[1] "7Q LOSS MUTATION ANALYSIS"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               25               125 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               25               125 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               40               110 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               40               110 
[1] "8Q LOSS MUTATION ANALYSIS"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               11               139 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               11               139 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               30               120 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               30               120 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               23               127 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               23               127 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                30                120 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                30                120 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                33                117 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                33                117 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                47                103 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                47                103 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                60                 90 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                60                 90 
[1] "12P LOSS MUTATION ANALYSIS"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                22                128 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                22                128 
[1] "12Q LOSS MUTATION ANALYSIS"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 7                143 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 7                143 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                39                111 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                39                111 
[1] "14Q LOSS MUTATION ANALYSIS"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                17                133 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                17                133 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                20                130 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                20                130 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                16                134 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                16                134 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                21                129 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                21                129 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                47                103 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                47                103 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                16                134 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                16                134 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                28                122 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                28                122 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                38                112 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                38                112 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                25                125 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                25                125 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                12                138 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                12                138 
[1] "20P LOSS MUTATION ANALYSIS"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                10                140 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                10                140 
[1] "20Q LOSS MUTATION ANALYSIS"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 4                146 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 4                146 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                20                130 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                20                130 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                30                120 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                30                120 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               31               119 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               31               119 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "HISTOLOGICALTYPE"                      
[14] "RADIATIONS.RADIATION.REGIMENINDICATION"
[15] "NUMBERPACKYEARSSMOKED"                 
[16] "NUMBER.OF.LYMPH.NODES"                 
[17] "GLEASON_SCORE"                         
[18] "PSA_VALUE"                             
[19] "DAYS_TO_PSA"                           
[20] "BATCHNUMBER"                           

Input Data has 20 rows and 150 columns.

[1] "Batch" "20"   
[1] "Last Follow UP"
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
        1505         1735           NA           NA           NA         1112 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ 
        4385         5385         5271           NA           NA           NA 
TCGA-C5-A1M5 TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF 
          NA           NA         1409          919           NA         1617 
TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP 
          NA           NA           NA           NA           NA          109 
TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 
        1345         2234          491         2383         1169           25 
TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CK 
        1582          548           NA          771           NA           NA 
TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7UH TCGA-C5-A7X3 
          NA          294           NA         2602         1846           NA 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN 
        2669         1791           NA           81         3589         3609 
TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS 
         699          512           NA          223           NA           23 
TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE 
           8           53           40           25           19           36 
TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E 
         441          441           55          385          390            8 
TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX 
          45          423           21          456          455           19 
TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2PI 
          12          383         1398          202           16           NA 
TCGA-EK-A2PK TCGA-EK-A2PL TCGA-EK-A2PM TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC 
          NA           NA           NA           18            2          123 
TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RK TCGA-EK-A2RL TCGA-EK-A2RM 
           1           11           36           NA          721           68 
TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GM TCGA-EK-A3GN 
           3            2            3            3           NA            1 
TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M 
         619          241          211          447          136          186 
TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ 
          37          725           28           66           20           31 
TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J 
          44           48           45           25          107           41 
TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 
          40           60          773           NA          632          454 
TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF 
         125         4483         4172           NA         3571         2949 
TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU 
        2394         2493          808         1106          506            3 
TCGA-LP-A4AV TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD 
          NA           27            2          422            1          904 
TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DT 
           2          132          113          105          178          103 
TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
         113          175          190          118           NA           NA 
Variable 1:'AGE':	nDistinctValues=52,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=29,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=100,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=13,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=19,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'HISTOLOGICAL.TYPE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'NUMBERPACKYEARSSMOKED':	nDistinctValues=20,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 16:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=10,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 17:'GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 18:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 19:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 20:'BATCH.NUMBER':	nDistinctValues=20,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "PATHOLOGY.T.STAGE"                     
[3] "PATHOLOGY.N.STAGE"                     
[4] "PATHOLOGY.M.STAGE"                     
[5] "HISTOLOGICAL.TYPE"                     
[6] "RADIATIONS.RADIATION.REGIMENINDICATION"
[7] "NUMBERPACKYEARSSMOKED"                 
[8] "NUMBER.OF.LYMPH.NODES"                 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "2"          
[1] "PATHOLOGY.N" "3"          
Output Data has 150 columns, 1 survival variables, and 8 non-survival variables.
AGE, nv=52, binary=FALSE, numeric=TRUE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T1 T2 T3 T4 
81 29  2  1 
[1] "table(vv)"
vv
      T1 T2+T3+T4 
      81       32 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
T1 T2 T3 T4 
81 29  2  1 

$ClinVariableType
[1] "binary"

$Class0_nSamples
[1] 81

$Class1_nSamples
[1] 32

$Class0_label
[1] "T1"

$Class1_label
[1] "T2+T3+T4"


      T1 T2+T3+T4 
      81       32 
PATHOLOGY.N.STAGE, nv=2, binary=FALSE, numeric=TRUE
PATHOLOGY.M.STAGE, nv=3, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=6, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=20, binary=FALSE, numeric=TRUE
NUMBER.OF.LYMPH.NODES, nv=10, binary=FALSE, numeric=TRUE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
D1V1, survival
                   sevent
clus2                0  1
  1P GAIN MUTATED   35  7
  1P GAIN WILD-TYPE 80 21
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               42               101 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
                7                21 
$`1P GAIN MUTATED`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BM TCGA-C5-A1M6 TCGA-C5-A1M7 
       49.48        36.56       177.04        82.85        31.40        46.32 
TCGA-C5-A1MH TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A3HF TCGA-C5-A7CJ TCGA-DR-A0ZL 
       38.99         2.73         2.43        17.85       101.82        87.75 
TCGA-DS-A0VL TCGA-EA-A1QS TCGA-EA-A3HQ TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A43B 
        2.66         0.76         1.74         0.62        14.50         1.81 
TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZF TCGA-EK-A2GZ TCGA-EK-A2PG TCGA-EK-A2R7 
       13.91         0.69        14.96        12.59         0.53         0.59 
TCGA-EK-A2RJ TCGA-EK-A2RM TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GN TCGA-EX-A3L1 
        1.18         2.24         0.10         0.07         0.03         6.94 
TCGA-EX-A69L TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A40J TCGA-HM-A3JK TCGA-HM-A4S6 
        4.47         1.45         1.58         1.35        20.78        14.93 
TCGA-IR-A3LC TCGA-IR-A3LL TCGA-MU-A51Y TCGA-MY-A5BE TCGA-Q1-A5R2 TCGA-UC-A7PF 
      117.40        36.36        13.87         0.07         3.45        93.99 

$`1P GAIN WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BJ TCGA-C5-A1BL 
       57.04        11.44        68.84        18.74       144.16       173.29 
TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF 
        5.46        19.86        67.46        30.21        35.01        53.16 
TCGA-C5-A1MI TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LX 
       35.61        40.93         3.58        44.22        73.45        16.14 
TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A7CH 
       78.35        38.43         0.82        52.01        18.02        25.35 
TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7UH 
      134.33        15.48         9.67        17.19        85.55        60.69 
TCGA-C5-A7X3 TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
        9.34        58.88        36.76       117.99       118.65        22.98 
TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QT TCGA-EA-A3HR 
       16.83        16.18         7.33         8.28         0.26         1.32 
TCGA-EA-A3HS TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E 
        0.82         1.18        14.50        12.66        12.82         0.26 
TCGA-EA-A5FO TCGA-EA-A5ZE TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2H0 TCGA-EK-A2IP 
        1.48        14.99         0.62         0.39        45.96         6.64 
TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RL TCGA-EK-A3GJ 
        0.07         4.04         0.03         0.36        23.70         0.10 
TCGA-EK-A3GK TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A449 TCGA-EX-A69M TCGA-FU-A23K 
        0.10        20.35         7.92        14.70         6.12         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TX 
       23.84         0.92         2.17         0.66         1.02         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ 
        0.82         3.52         1.32         1.97        25.41        21.67 
TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LF TCGA-IR-A3LH 
        4.11       147.39       137.16        66.81        96.95        78.71 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX 
       81.96        26.56        16.64         0.10         0.89         0.07 
TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R3 TCGA-Q1-A6DT 
        0.03        29.72         4.34         3.72         5.85         3.39 
TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD 
        3.72         5.75         6.25         3.88        11.67 

  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             0.03              0.03 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
           177.04            173.29 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
            5.705            12.820 
[1] "0.0 - 177.0 (5.7)"  "0.0 - 173.3 (12.8)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
[1] "hr=" "1.1"
D1V2, continuous
                   vv
clus                T1 T2+T3+T4
  1P GAIN MUTATED   22       11
  1P GAIN WILD-TYPE 59       21
D1V3, multiclass
          clus
vv         1P GAIN MUTATED 1P GAIN WILD-TYPE
  T1                    22                59
  T2+T3+T4              11                21
D1V4, binary
                   cls
clus                 0  1
  1P GAIN MUTATED   20 12
  1P GAIN WILD-TYPE 53 24
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED     20   12
  1P GAIN WILD-TYPE   53   24
   clus
vv  1P GAIN MUTATED 1P GAIN WILD-TYPE
  0              20                53
  1              12                24
                   vv
clus                M0 M1 MX
  1P GAIN MUTATED   19  0 15
  1P GAIN WILD-TYPE 42  3 38
D1V5, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  M0              19                42
  M1               0                 3
  MX              15                38
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  1P GAIN MUTATED               0                               42
  1P GAIN WILD-TYPE             2                               82
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  1P GAIN MUTATED                                               0
  1P GAIN WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  1P GAIN MUTATED                                     2
  1P GAIN WILD-TYPE                                  14
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  1P GAIN MUTATED                                           0
  1P GAIN WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  1P GAIN MUTATED                                              1
  1P GAIN WILD-TYPE                                            2
D1V6, multiclass
D1V7, binary
                   cls
clus                 0  1
  1P GAIN MUTATED    7 38
  1P GAIN WILD-TYPE 18 87
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      7   38
  1P GAIN WILD-TYPE   18   87
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  NO                7                18
  YES              38                87
D1V8, continuous
D1V9, continuous

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
D2V1, survival
                   sevent
clus2                0  1
  1Q GAIN MUTATED   56 12
  1Q GAIN WILD-TYPE 59 16
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               68                75 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               12                16 
$`1Q GAIN MUTATED`
TCGA-BI-A0VR TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL 
       49.48        18.74        36.56       144.16       177.04       173.29 
TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1MF TCGA-C5-A1MH 
       82.85         5.46        31.40        46.32        53.16        38.99 
TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LY TCGA-C5-A3HF 
        2.73         2.43         3.58        44.22        78.35        17.85 
TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VL 
      101.82       134.33        15.48        87.75        58.88         2.66 
TCGA-DS-A3LQ TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A3HQ TCGA-EA-A3HR 
       22.98         7.33         8.28         0.76         1.74         1.32 
TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE 
        0.62        14.50         1.81        13.91         0.69        14.99 
TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2PG 
       14.96         0.62         0.39        12.59        45.96         0.53 
TCGA-EK-A2R7 TCGA-EK-A2RJ TCGA-EK-A2RM TCGA-EK-A2RN TCGA-EK-A3GK TCGA-EK-A3GN 
        0.59         1.18         2.24         0.10         0.10         0.03 
TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23L TCGA-FU-A3EO 
        6.94        14.70         4.47         6.12        23.84         2.17 
TCGA-FU-A3NI TCGA-FU-A40J TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3LC 
        1.45         1.35        20.78        14.93         4.11       117.40 
TCGA-IR-A3LL TCGA-LP-A4AU TCGA-MU-A51Y TCGA-MY-A5BE TCGA-Q1-A5R2 TCGA-Q1-A5R3 
       36.36         0.10        13.87         0.07         3.45         5.85 
TCGA-Q1-A73R TCGA-UC-A7PF 
        6.25        93.99 

$`1Q GAIN WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BQ TCGA-C5-A1M5 TCGA-C5-A1M8 
       57.04        11.44        68.84        19.86        67.46        30.21 
TCGA-C5-A1M9 TCGA-C5-A1MI TCGA-C5-A1MN TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2M1 
       35.01        35.61        40.93        73.45        16.14        38.43 
TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A7CH TCGA-C5-A7CM TCGA-C5-A7UC 
        0.82        52.01        18.02        25.35         9.67        17.19 
TCGA-C5-A7UE TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DS-A0VK TCGA-DS-A0VM TCGA-DS-A0VN 
       85.55        60.69         9.34        36.76       117.99       118.65 
TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-EA-A1QT TCGA-EA-A3HS TCGA-EA-A3QE TCGA-EA-A3Y4 
       16.83        16.18         0.26         0.82         1.18        14.50 
TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EK-A2IP TCGA-EK-A2RB 
       12.66        12.82         0.26         1.48         6.64         0.07 
TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RL TCGA-EK-A2RO TCGA-EK-A3GJ 
        4.04         0.03         0.36        23.70         0.07         0.10 
TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A3HZ 
       20.35         7.92         1.22         0.92         0.66         1.02 
TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-FU-A5XV 
        1.58         1.48         0.82         3.52         1.32         1.97 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LF 
       25.41        21.67       147.39       137.16        66.81        96.95 
TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-JW-A5VI TCGA-LP-A4AW TCGA-LP-A4AX 
       78.71        81.96        26.56        16.64         0.89         0.07 
TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DT TCGA-Q1-A6DV 
        0.03        29.72         4.34         3.72         3.39         3.72 
TCGA-Q1-A6DW TCGA-RA-A741 TCGA-UC-A7PD 
        5.75         3.88        11.67 

  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
             0.03              0.03 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
           177.04            147.39 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
           10.435            12.660 
[1] "0.0 - 177.0 (10.4)" "0.0 - 147.4 (12.7)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
[1] "hr=" "1.3"
D2V2, continuous
                   vv
clus                T1 T2+T3+T4
  1Q GAIN MUTATED   34       18
  1Q GAIN WILD-TYPE 47       14
D2V3, multiclass
          clus
vv         1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  T1                    34                47
  T2+T3+T4              18                14
D2V4, binary
                   cls
clus                 0  1
  1Q GAIN MUTATED   32 18
  1Q GAIN WILD-TYPE 41 18
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     32   18
  1Q GAIN WILD-TYPE   41   18
   clus
vv  1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  0              32                41
  1              18                18
                   vv
clus                M0 M1 MX
  1Q GAIN MUTATED   30  2 24
  1Q GAIN WILD-TYPE 31  1 29
D2V5, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  M0              30                31
  M1               2                 1
  MX              24                29
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  1Q GAIN MUTATED               1                               62
  1Q GAIN WILD-TYPE             1                               62
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  1Q GAIN MUTATED                                               2
  1Q GAIN WILD-TYPE                                             2
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  1Q GAIN MUTATED                                     7
  1Q GAIN WILD-TYPE                                   9
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  1Q GAIN MUTATED                                           0
  1Q GAIN WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  1Q GAIN MUTATED                                              1
  1Q GAIN WILD-TYPE                                            2
D2V6, multiclass
D2V7, binary
                   cls
clus                 0  1
  1Q GAIN MUTATED   15 58
  1Q GAIN WILD-TYPE 10 67
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     15   58
  1Q GAIN WILD-TYPE   10   67
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  NO               15                10
  YES              58                67
D2V8, continuous
D2V9, continuous

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
D3V1, survival
                   sevent
clus2                0  1
  2P GAIN MUTATED   18  6
  2P GAIN WILD-TYPE 97 22
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               24               119 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
                6                22 
$`2P GAIN MUTATED`
TCGA-C5-A1BN TCGA-C5-A1M6 TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A2M2 TCGA-C5-A7UH 
        5.46        31.40        35.61         2.73         0.82        60.69 
TCGA-C5-A7X3 TCGA-DS-A3LQ TCGA-DS-A7WH TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A5ZF 
        9.34        22.98         7.33        14.50         1.81        14.96 
TCGA-EK-A2GZ TCGA-EK-A2RJ TCGA-EK-A2RM TCGA-EK-A3GJ TCGA-EX-A1H6 TCGA-FU-A23L 
       12.59         1.18         2.24         0.10         7.92        23.84 
TCGA-FU-A40J TCGA-IR-A3LC TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-UC-A7PD TCGA-UC-A7PF 
        1.35       117.40         3.45         5.85        11.67        93.99 

$`2P GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BQ TCGA-C5-A1M5 
      144.16       177.04       173.29        82.85        19.86        67.46 
TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MK 
       46.32        30.21        35.01        53.16        38.99         2.43 
TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2LY 
       40.93         3.58        44.22        73.45        16.14        78.35 
TCGA-C5-A2M1 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CH TCGA-C5-A7CJ 
       38.43        52.01        18.02        17.85        25.35       101.82 
TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE TCGA-DR-A0ZL 
      134.33        15.48         9.67        17.19        85.55        87.75 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ 
       58.88        36.76         2.66       117.99       118.65        16.83 
TCGA-DS-A7WF TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR 
       16.18         8.28         0.76         0.26         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A44S TCGA-EA-A4BA 
        0.82         0.62         1.18        14.50        12.66        12.82 
TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A6QX 
        0.26         1.48        13.91         0.69        14.99         0.62 
TCGA-EA-A78R TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB 
        0.39        45.96         6.64         0.53         0.59         0.07 
TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RL TCGA-EK-A2RN TCGA-EK-A2RO 
        4.04         0.03         0.36        23.70         0.10         0.07 
TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L 
        0.10         0.03        20.35         6.94        14.70         4.47 
TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ 
        6.12         1.22         0.92         2.17         0.66         1.02 
TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G 
        1.45         1.58         1.48         0.82         3.52         1.32 
TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 
        1.97        25.41        21.67        20.78        14.93         4.11 
TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI 
      147.39       137.16        66.81        96.95        78.71        81.96 
TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX 
       26.56        36.36        16.64         0.10         0.89         0.07 
TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 
       13.87         0.03        29.72         0.07         4.34         3.72 
TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 
        3.39         3.72         5.75         6.25         3.88 

  2P GAIN MUTATED 2P GAIN WILD-TYPE 
             0.10              0.03 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
           117.40            177.04 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
             8.63             13.87 
[1] "0.1 - 117.4 (8.6)"  "0.0 - 177.0 (13.9)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
[1] "hr=" "1.9"
D3V2, continuous
                   vv
clus                T1 T2+T3+T4
  2P GAIN MUTATED   11        4
  2P GAIN WILD-TYPE 70       28
D3V3, multiclass
          clus
vv         2P GAIN MUTATED 2P GAIN WILD-TYPE
  T1                    11                70
  T2+T3+T4               4                28
D3V4, binary
                   cls
clus                 0  1
  2P GAIN MUTATED   10  4
  2P GAIN WILD-TYPE 63 32
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED     10    4
  2P GAIN WILD-TYPE   63   32
   clus
vv  2P GAIN MUTATED 2P GAIN WILD-TYPE
  0              10                63
  1               4                32
                   vv
clus                M0 M1 MX
  2P GAIN MUTATED    8  0  8
  2P GAIN WILD-TYPE 53  3 45
D3V5, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  M0               8                53
  M1               0                 3
  MX               8                45
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  2P GAIN MUTATED               0                               21
  2P GAIN WILD-TYPE             2                              103
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  2P GAIN MUTATED                                               0
  2P GAIN WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  2P GAIN MUTATED                                     5
  2P GAIN WILD-TYPE                                  11
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  2P GAIN MUTATED                                           0
  2P GAIN WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  2P GAIN MUTATED                                              0
  2P GAIN WILD-TYPE                                            3
D3V6, multiclass
D3V7, binary
                   cls
clus                  0   1
  2P GAIN MUTATED     4  22
  2P GAIN WILD-TYPE  21 103
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED      4   22
  2P GAIN WILD-TYPE   21  103
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  NO                4                21
  YES              22               103
D3V8, continuous
D3V9, continuous

Clustering(4) Variable = 2Q GAIN MUTATION ANALYSIS
D4V1, survival
                   sevent
clus2                 0   1
  2Q GAIN MUTATED    10   6
  2Q GAIN WILD-TYPE 105  22
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               16               127 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                6                22 
$`2Q GAIN MUTATED`
TCGA-C5-A1M6 TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DS-A7WH 
       31.40        35.61         2.73        60.69         9.34         7.33 
TCGA-DS-A7WI TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A5ZF TCGA-EK-A2GZ TCGA-EK-A2RJ 
        8.28        14.50         1.81        14.96        12.59         1.18 
TCGA-EK-A2RM TCGA-FU-A40J TCGA-UC-A7PD TCGA-UC-A7PF 
        2.24         1.35        11.67        93.99 

$`2Q GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ 
      144.16       177.04       173.29        82.85         5.46        19.86 
TCGA-C5-A1M5 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF TCGA-C5-A1MH 
       67.46        46.32        30.21        35.01        53.16        38.99 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LX 
        2.43        40.93         3.58        44.22        73.45        16.14 
TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF 
       78.35        38.43         0.82        52.01        18.02        17.85 
TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC 
       25.35       101.82       134.33        15.48         9.67        17.19 
TCGA-C5-A7UE TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM 
       85.55        87.75        58.88        36.76         2.66       117.99 
TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-EA-A1QS TCGA-EA-A1QT 
      118.65        22.98        16.83        16.18         0.76         0.26 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 
        1.74         1.32         0.82         0.62         1.18        14.50 
TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD 
       12.66        12.82         0.26         1.48        13.91         0.69 
TCGA-EA-A5ZE TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2PG 
       14.99         0.62         0.39        45.96         6.64         0.53 
TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RL 
        0.59         0.07         4.04         0.03         0.36        23.70 
TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 
        0.10         0.07         0.10         0.10         0.03        20.35 
TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K 
        7.92         6.94        14.70         4.47         6.12         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI 
       23.84         0.92         2.17         0.66         1.02         1.45 
TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-FU-A5XV 
        1.58         1.48         0.82         3.52         1.32         1.97 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 
       25.41        21.67        20.78        14.93         4.11       147.39 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI 
      137.16        66.81       117.40        96.95        78.71        81.96 
TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX 
       26.56        36.36        16.64         0.10         0.89         0.07 
TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 
       13.87         0.03        29.72         0.07         4.34         3.72 
TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R 
        3.45         5.85         3.39         3.72         5.75         6.25 
TCGA-RA-A741 
        3.88 

  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
             1.18              0.03 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
            93.99            177.04 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
           10.505            12.820 
[1] "1.2 - 94.0 (10.5)"  "0.0 - 177.0 (12.8)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
[1] "hr=" "3.3"
D4V2, continuous
                   vv
clus                T1 T2+T3+T4
  2Q GAIN MUTATED    8        3
  2Q GAIN WILD-TYPE 73       29
D4V3, multiclass
          clus
vv         2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  T1                     8                73
  T2+T3+T4               3                29
D4V4, binary
                   cls
clus                 0  1
  2Q GAIN MUTATED    6  4
  2Q GAIN WILD-TYPE 67 32
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      6    4
  2Q GAIN WILD-TYPE   67   32
   clus
vv  2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  0               6                67
  1               4                32
                   vv
clus                M0 M1 MX
  2Q GAIN MUTATED    6  0  5
  2Q GAIN WILD-TYPE 55  3 48
D4V5, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  M0               6                55
  M1               0                 3
  MX               5                48
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  2Q GAIN MUTATED               0                               15
  2Q GAIN WILD-TYPE             2                              109
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  2Q GAIN MUTATED                                               0
  2Q GAIN WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  2Q GAIN MUTATED                                     3
  2Q GAIN WILD-TYPE                                  13
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  2Q GAIN MUTATED                                           0
  2Q GAIN WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  2Q GAIN MUTATED                                              0
  2Q GAIN WILD-TYPE                                            3
D4V6, multiclass
D4V7, binary
                   cls
clus                  0   1
  2Q GAIN MUTATED     2  16
  2Q GAIN WILD-TYPE  23 109
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      2   16
  2Q GAIN WILD-TYPE   23  109
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  NO                2                23
  YES              16               109
D4V8, continuous
[1] "Remove cluster labels:" "2Q GAIN MUTATED"       
clus
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
                2                41 
       TCGA-BI-A0VR        TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BN        TCGA-C5-A1BQ        TCGA-C5-A1M7 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MN        TCGA-C5-A2LS 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2M2        TCGA-C5-A3HD 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CJ        TCGA-C5-A7CK        TCGA-C5-A7CL 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-C5-A7UE        TCGA-DR-A0ZM        TCGA-DS-A5RQ        TCGA-DS-A7WF 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-EX-A1H5        TCGA-FU-A2QG        TCGA-FU-A3EO        TCGA-FU-A3HY 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-FU-A3TQ        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A5XV 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7        TCGA-IR-A3LB 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-JW-A5VI        TCGA-MU-A5YI        TCGA-Q1-A6DW 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-RA-A741 
"2Q GAIN WILD-TYPE" 
D4V9, continuous

Clustering(5) Variable = 3P GAIN MUTATION ANALYSIS
D5V1, survival
                   sevent
clus2                0  1
  3P GAIN MUTATED   22 12
  3P GAIN WILD-TYPE 93 16
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               34               109 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               12                16 
$`3P GAIN MUTATED`
TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF TCGA-C5-A1MH 
       31.40        46.32        30.21        35.01        53.16        38.99 
TCGA-C5-A1MJ TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL 
        2.73        18.02        17.85       101.82       134.33        15.48 
TCGA-C5-A7X3 TCGA-DS-A0VL TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A439 
        9.34         2.66         7.33         8.28         0.76        14.50 
TCGA-EA-A50E TCGA-EA-A5ZF TCGA-EK-A2GZ TCGA-EK-A2RM TCGA-EK-A2RO TCGA-EX-A69L 
        0.26        14.96        12.59         2.24         0.07         4.47 
TCGA-FU-A3NI TCGA-FU-A3TX TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-IR-A3LA 
        1.45         1.48        25.41        21.67        20.78       137.16 
TCGA-LP-A4AU TCGA-Q1-A5R1 TCGA-Q1-A6DT TCGA-UC-A7PF 
        0.10         3.72         3.39        93.99 

$`3P GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ 
      144.16       177.04       173.29        82.85         5.46        19.86 
TCGA-C5-A1M5 TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS 
       67.46        35.61         2.43        40.93         3.58        44.22 
TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD 
       73.45        16.14        78.35        38.43         0.82        52.01 
TCGA-C5-A7CH TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7UH TCGA-DR-A0ZL 
       25.35         9.67        17.19        85.55        60.69        87.75 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ 
       58.88        36.76       117.99       118.65        22.98        16.83 
TCGA-DS-A7WF TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
       16.18         0.26         1.74         1.32         0.82         0.62 
TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A5FO 
        1.18        14.50         1.81        12.66        12.82         1.48 
TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2H0 
       13.91         0.69        14.99         0.62         0.39        45.96 
TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD 
        6.64         0.53         0.59         0.07         4.04         0.03 
TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RN TCGA-EK-A3GJ TCGA-EK-A3GK 
        0.36         1.18        23.70         0.10         0.10         0.10 
TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69M 
        0.03        20.35         7.92         6.94        14.70         6.12 
TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ 
        1.22        23.84         0.92         2.17         0.66         1.02 
TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV 
        1.58         0.82         3.52         1.35         1.32         1.97 
TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF 
       14.93         4.11       147.39        66.81       117.40        96.95 
TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AW 
       78.71        81.96        26.56        36.36        16.64         0.89 
TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
        0.07        13.87         0.03        29.72         0.07         4.34 
TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 
        3.45         5.85         3.72         5.75         6.25         3.88 
TCGA-UC-A7PD 
       11.67 

  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             0.07              0.03 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
           137.16            177.04 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
            14.73             11.44 
[1] "0.1 - 137.2 (14.7)" "0.0 - 177.0 (11.4)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
[1] "hr=" "2.4"
D5V2, continuous
                   vv
clus                T1 T2+T3+T4
  3P GAIN MUTATED   17        7
  3P GAIN WILD-TYPE 64       25
D5V3, multiclass
          clus
vv         3P GAIN MUTATED 3P GAIN WILD-TYPE
  T1                    17                64
  T2+T3+T4               7                25
D5V4, binary
                   cls
clus                 0  1
  3P GAIN MUTATED   14  9
  3P GAIN WILD-TYPE 59 27
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED     14    9
  3P GAIN WILD-TYPE   59   27
   clus
vv  3P GAIN MUTATED 3P GAIN WILD-TYPE
  0              14                59
  1               9                27
                   vv
clus                M0 M1 MX
  3P GAIN MUTATED   13  0 12
  3P GAIN WILD-TYPE 48  3 41
D5V5, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  M0              13                48
  M1               0                 3
  MX              12                41
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  3P GAIN MUTATED               0                               30
  3P GAIN WILD-TYPE             2                               94
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  3P GAIN MUTATED                                               0
  3P GAIN WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  3P GAIN MUTATED                                     4
  3P GAIN WILD-TYPE                                  12
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  3P GAIN MUTATED                                           1
  3P GAIN WILD-TYPE                                         0
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  3P GAIN MUTATED                                              2
  3P GAIN WILD-TYPE                                            1
D5V6, multiclass
D5V7, binary
                   cls
clus                 0  1
  3P GAIN MUTATED    8 29
  3P GAIN WILD-TYPE 17 96
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      8   29
  3P GAIN WILD-TYPE   17   96
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  NO                8                17
  YES              29                96
D5V8, continuous
D5V9, continuous

Clustering(6) Variable = 3Q GAIN MUTATION ANALYSIS
D6V1, survival
                   sevent
clus2                0  1
  3Q GAIN MUTATED   65 20
  3Q GAIN WILD-TYPE 50  8
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               85                58 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               20                 8 
$`3Q GAIN MUTATED`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BM 
       49.48        11.44        36.56       144.16       177.04        82.85 
TCGA-C5-A1M5 TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF 
       67.46        31.40        46.32        30.21        35.01        53.16 
TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP 
       38.99        35.61         2.73         2.43        40.93         3.58 
TCGA-C5-A2LS TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CJ 
       44.22        16.14        78.35        18.02        17.85       101.82 
TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7UE TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DS-A0VK 
      134.33        15.48        85.55         9.34        87.75        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WH 
        2.66       117.99       118.65        22.98        16.83         7.33 
TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS 
        8.28         0.76         0.26         1.74         1.32         0.82 
TCGA-EA-A3HT TCGA-EA-A439 TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD 
        0.62        14.50         0.26         1.48        13.91         0.69 
TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EK-A2GZ TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC 
       14.99        14.96        12.59         0.59         0.07         4.04 
TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EX-A1H5 TCGA-EX-A3L1 
       23.70         2.24         0.10         0.07        20.35         6.94 
TCGA-EX-A69L TCGA-FU-A23L TCGA-FU-A3NI TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ 
        4.47        23.84         1.45         1.48         0.82         3.52 
TCGA-FU-A40J TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 
        1.35         1.97        25.41        21.67        20.78        14.93 
TCGA-IR-A3LA TCGA-IR-A3LC TCGA-IR-A3LL TCGA-LP-A4AU TCGA-MU-A51Y TCGA-Q1-A5R1 
      137.16       117.40        36.36         0.10        13.87         3.72 
TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DW TCGA-RA-A741 TCGA-UC-A7PD 
        3.45         5.85         3.39         5.75         3.88        11.67 
TCGA-UC-A7PF 
       93.99 

$`3Q GAIN WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BL TCGA-C5-A1BN TCGA-C5-A1BQ 
       57.04        68.84        18.74       173.29         5.46        19.86 
TCGA-C5-A2LV TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A7CH TCGA-C5-A7CM 
       73.45        38.43         0.82        52.01        25.35         9.67 
TCGA-C5-A7UC TCGA-C5-A7UH TCGA-DR-A0ZM TCGA-DS-A7WF TCGA-EA-A3QE TCGA-EA-A3Y4 
       17.19        60.69        58.88        16.18         1.18        14.50 
TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2H0 
        1.81        12.66        12.82         0.62         0.39        45.96 
TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A3GJ 
        6.64         0.53         0.03         0.36         1.18         0.10 
TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H6 TCGA-EX-A449 TCGA-EX-A69M TCGA-FU-A23K 
        0.10         0.03         7.92        14.70         6.12         1.22 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A57G 
        0.92         2.17         0.66         1.02         1.58         1.32 
TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LB TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI 
        4.11       147.39        66.81        96.95        78.71        81.96 
TCGA-IR-A3LK TCGA-JW-A5VI TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A5YI TCGA-MY-A5BD 
       26.56        16.64         0.89         0.07         0.03        29.72 
TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A6DV TCGA-Q1-A73R 
        0.07         4.34         3.72         6.25 

  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
             0.07              0.03 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
           177.04            173.29 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
           14.500             6.445 
[1] "0.1 - 177.0 (14.5)" "0.0 - 173.3 (6.4)" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
[1] "hr=" "1.3"
D6V2, continuous
                   vv
clus                T1 T2+T3+T4
  3Q GAIN MUTATED   46       20
  3Q GAIN WILD-TYPE 35       12
D6V3, multiclass
          clus
vv         3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  T1                    46                35
  T2+T3+T4              20                12
D6V4, binary
                   cls
clus                 0  1
  3Q GAIN MUTATED   39 26
  3Q GAIN WILD-TYPE 34 10
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED     39   26
  3Q GAIN WILD-TYPE   34   10
   clus
vv  3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  0              39                34
  1              26                10
                   vv
clus                M0 M1 MX
  3Q GAIN MUTATED   39  0 31
  3Q GAIN WILD-TYPE 22  3 22
D6V5, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  M0              39                22
  M1               0                 3
  MX              31                22
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  3Q GAIN MUTATED               0                               79
  3Q GAIN WILD-TYPE             2                               45
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  3Q GAIN MUTATED                                               1
  3Q GAIN WILD-TYPE                                             3
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  3Q GAIN MUTATED                                     6
  3Q GAIN WILD-TYPE                                  10
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  3Q GAIN MUTATED                                           1
  3Q GAIN WILD-TYPE                                         0
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  3Q GAIN MUTATED                                              2
  3Q GAIN WILD-TYPE                                            1
D6V6, multiclass
D6V7, binary
                   cls
clus                 0  1
  3Q GAIN MUTATED   20 69
  3Q GAIN WILD-TYPE  5 56
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED     20   69
  3Q GAIN WILD-TYPE    5   56
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  NO               20                 5
  YES              69                56
D6V8, continuous
D6V9, continuous

Clustering(7) Variable = 4P GAIN MUTATION ANALYSIS
D7V1, survival
                   sevent
clus2                 0   1
  4P GAIN MUTATED     1   1
  4P GAIN WILD-TYPE 114  27
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                2               141 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                1                27 
$`4P GAIN MUTATED`
TCGA-C5-A1MN TCGA-FU-A23K 
       40.93         1.22 

$`4P GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ 
      144.16       177.04       173.29        82.85         5.46        19.86 
TCGA-C5-A1M5 TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF 
       67.46        31.40        46.32        30.21        35.01        53.16 
TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MP TCGA-C5-A2LS 
       38.99        35.61         2.73         2.43         3.58        44.22 
TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD 
       73.45        16.14        78.35        38.43         0.82        52.01 
TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL 
       18.02        17.85        25.35       101.82       134.33        15.48 
TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZL 
        9.67        17.19        85.55        60.69         9.34        87.75 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
       58.88        36.76         2.66       117.99       118.65        22.98 
TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A1QT 
       16.83        16.18         7.33         8.28         0.76         0.26 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 
        1.74         1.32         0.82         0.62         1.18        14.50 
TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO 
       14.50         1.81        12.66        12.82         0.26         1.48 
TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R 
       13.91         0.69        14.99        14.96         0.62         0.39 
TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB 
       12.59        45.96         6.64         0.53         0.59         0.07 
TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RM 
        4.04         0.03         0.36         1.18        23.70         2.24 
TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 
        0.10         0.07         0.10         0.10         0.03        20.35 
TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23L 
        7.92         6.94        14.70         4.47         6.12        23.84 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ 
        0.92         2.17         0.66         1.02         1.45         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV 
        1.48         0.82         3.52         1.35         1.32         1.97 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 
       25.41        21.67        20.78        14.93         4.11       147.39 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI 
      137.16        66.81       117.40        96.95        78.71        81.96 
TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX 
       26.56        36.36        16.64         0.10         0.89         0.07 
TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 
       13.87         0.03        29.72         0.07         4.34         3.72 
TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R 
        3.45         5.85         3.39         3.72         5.75         6.25 
TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        3.88        11.67        93.99 

  4P GAIN MUTATED 4P GAIN WILD-TYPE 
             1.22              0.03 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
            40.93            177.04 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
           21.075            12.590 
[1] "1.2 - 40.9 (21.1)"  "0.0 - 177.0 (12.6)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
[1] "Remove cluster labels:" "4P GAIN MUTATED"       
clus
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                2               141 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MP        TCGA-C5-A2LS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY        TCGA-C5-A2M1 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE        TCGA-C5-A3HF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK        TCGA-C5-A7CL 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE        TCGA-C5-A7UH 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM        TCGA-DS-A0VK 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN        TCGA-DS-A3LQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH        TCGA-DS-A7WI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ        TCGA-EA-A3HR 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE        TCGA-EA-A3Y4 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S        TCGA-EA-A4BA 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9        TCGA-EA-A5ZD 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX        TCGA-EA-A78R 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP        TCGA-EK-A2PG 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC        TCGA-EK-A2RD 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL        TCGA-EK-A2RM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ        TCGA-EK-A3GK 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6        TCGA-EX-A3L1 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M        TCGA-FU-A23L 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FU-A2QG        TCGA-FU-A3EO        TCGA-FU-A3HY        TCGA-FU-A3HZ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FU-A3NI        TCGA-FU-A3TQ        TCGA-FU-A3TX        TCGA-FU-A3WB 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FU-A3YQ        TCGA-FU-A40J        TCGA-FU-A57G        TCGA-FU-A5XV 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HG-A2PA        TCGA-HM-A3JJ        TCGA-HM-A3JK        TCGA-HM-A4S6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HM-A6W2        TCGA-IR-A3L7        TCGA-IR-A3LA        TCGA-IR-A3LB 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IR-A3LC        TCGA-IR-A3LF        TCGA-IR-A3LH        TCGA-IR-A3LI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IR-A3LK        TCGA-IR-A3LL        TCGA-JW-A5VI        TCGA-LP-A4AU 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-LP-A4AW        TCGA-LP-A4AX        TCGA-MU-A51Y        TCGA-MU-A5YI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MY-A5BD        TCGA-MY-A5BE        TCGA-MY-A5BF        TCGA-Q1-A5R1 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-Q1-A5R2        TCGA-Q1-A5R3        TCGA-Q1-A6DT        TCGA-Q1-A6DV 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-Q1-A6DW        TCGA-Q1-A73R        TCGA-RA-A741        TCGA-UC-A7PD 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-UC-A7PF 
"4P GAIN WILD-TYPE" 
D7V2, continuous
                   vv
clus                T1 T2+T3+T4
  4P GAIN MUTATED    1        0
  4P GAIN WILD-TYPE 80       32
D7V3, multiclass
[1] "Remove cluster labels:" "4P GAIN MUTATED"       
clus
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                1               112 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1BI        TCGA-C5-A1BK        TCGA-C5-A1BL        TCGA-C5-A1BM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M7        TCGA-C5-A1M8        TCGA-C5-A1M9 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1MF        TCGA-C5-A1MI        TCGA-C5-A1MJ        TCGA-C5-A1MP 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A3HE        TCGA-C5-A7CJ        TCGA-C5-A7UC 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DR-A0ZL        TCGA-DR-A0ZM        TCGA-DS-A0VK        TCGA-DS-A0VL 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DS-A0VM        TCGA-DS-A0VN        TCGA-DS-A3LQ        TCGA-DS-A5RQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DS-A7WF        TCGA-DS-A7WH        TCGA-DS-A7WI        TCGA-EA-A1QS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A1QT        TCGA-EA-A3HQ        TCGA-EA-A3HR        TCGA-EA-A3HS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A3HT        TCGA-EA-A3QE        TCGA-EA-A3Y4        TCGA-EA-A439 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A43B        TCGA-EA-A44S        TCGA-EA-A4BA        TCGA-EA-A50E 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A5FO        TCGA-EA-A5O9        TCGA-EA-A5ZD        TCGA-EA-A5ZE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A5ZF        TCGA-EA-A6QX        TCGA-EA-A78R        TCGA-EK-A2IP 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EK-A2R7        TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EK-A2RK        TCGA-EK-A2RL        TCGA-EK-A2RN        TCGA-EK-A3GJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EX-A1H5        TCGA-EX-A1H6        TCGA-EX-A3L1 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M        TCGA-FU-A23L 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FU-A2QG        TCGA-FU-A3EO        TCGA-FU-A3HY        TCGA-FU-A3HZ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FU-A3NI        TCGA-FU-A3TQ        TCGA-FU-A3TX        TCGA-FU-A3WB 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FU-A3YQ        TCGA-FU-A40J        TCGA-FU-A57G        TCGA-FU-A5XV 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HG-A2PA        TCGA-HM-A3JJ        TCGA-HM-A3JK        TCGA-HM-A4S6 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HM-A6W2        TCGA-IR-A3L7        TCGA-IR-A3LA        TCGA-IR-A3LB 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IR-A3LC        TCGA-IR-A3LF        TCGA-IR-A3LH        TCGA-IR-A3LI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IR-A3LK        TCGA-IR-A3LL        TCGA-JW-A5VI        TCGA-LP-A4AU 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-LP-A4AV        TCGA-LP-A4AW        TCGA-LP-A4AX        TCGA-MU-A51Y 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE        TCGA-MY-A5BF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-Q1-A5R1        TCGA-Q1-A6DV        TCGA-UC-A7PD        TCGA-UC-A7PF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
D7V4, binary
                   cls
clus                 0  1
  4P GAIN MUTATED    0  1
  4P GAIN WILD-TYPE 73 35
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      0    1
  4P GAIN WILD-TYPE   73   35
   clus
vv  4P GAIN MUTATED 4P GAIN WILD-TYPE
  0               0                73
  1               1                35
                   vv
clus                M0 M1 MX
  4P GAIN MUTATED    0  0  1
  4P GAIN WILD-TYPE 61  3 52
D7V5, multiclass
[1] "Remove cluster labels:" "4P GAIN MUTATED"       
clus
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                1               116 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BK        TCGA-C5-A1BL 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1BM        TCGA-C5-A1M5        TCGA-C5-A1M7        TCGA-C5-A1M8 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MI        TCGA-C5-A1MJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1MP        TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A2LY        TCGA-C5-A2M1        TCGA-C5-A3HE        TCGA-C5-A7CJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A7UC        TCGA-DR-A0ZL        TCGA-DR-A0ZM        TCGA-DS-A0VK 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN        TCGA-DS-A3LQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH        TCGA-DS-A7WI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ        TCGA-EA-A3HR 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE        TCGA-EA-A3Y4 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S        TCGA-EA-A4BA 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9        TCGA-EA-A5ZD 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX        TCGA-EA-A78R 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EK-A2IP        TCGA-EK-A2R7        TCGA-EK-A2RD        TCGA-EK-A2RE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EK-A2RJ        TCGA-EK-A2RK        TCGA-EK-A2RL        TCGA-EK-A2RN 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EX-A1H5        TCGA-EX-A1H6        TCGA-EX-A3L1 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M        TCGA-FU-A23L 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FU-A3EO        TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FU-A3TQ        TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FU-A40J        TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HM-A3JJ        TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IR-A3L7        TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IR-A3LF        TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IR-A3LL        TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AV 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-LP-A4AW        TCGA-LP-A4AX        TCGA-MU-A51Y        TCGA-MU-A5YI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MY-A5BD        TCGA-MY-A5BE        TCGA-MY-A5BF        TCGA-Q1-A5R1 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-Q1-A5R2        TCGA-Q1-A5R3        TCGA-Q1-A6DT        TCGA-Q1-A6DV 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-Q1-A6DW        TCGA-Q1-A73R        TCGA-UC-A7PD        TCGA-UC-A7PF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  4P GAIN MUTATED               0                                3
  4P GAIN WILD-TYPE             2                              121
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  4P GAIN MUTATED                                               0
  4P GAIN WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  4P GAIN MUTATED                                     0
  4P GAIN WILD-TYPE                                  16
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  4P GAIN MUTATED                                           0
  4P GAIN WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  4P GAIN MUTATED                                              0
  4P GAIN WILD-TYPE                                            3
D7V6, multiclass
D7V7, binary
                   cls
clus                  0   1
  4P GAIN MUTATED     1   2
  4P GAIN WILD-TYPE  24 123
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      1    2
  4P GAIN WILD-TYPE   24  123
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  NO                1                24
  YES               2               123
D7V8, continuous
[1] "Remove cluster labels:" "4P GAIN MUTATED"       
clus
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                1                42 
       TCGA-BI-A0VR        TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BN        TCGA-C5-A1BQ        TCGA-C5-A1M7 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI        TCGA-C5-A2LS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2M2        TCGA-C5-A3HD 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CJ        TCGA-C5-A7CK        TCGA-C5-A7CL 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A7UE        TCGA-DR-A0ZM        TCGA-DS-A5RQ        TCGA-DS-A7WF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EX-A1H5        TCGA-FU-A2QG        TCGA-FU-A3EO        TCGA-FU-A3HY 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FU-A3TQ        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A5XV 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7        TCGA-IR-A3LB 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-JW-A5VI        TCGA-MU-A5YI        TCGA-Q1-A6DW 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
D7V9, continuous
[1] "Remove cluster labels:" "4P GAIN MUTATED"       
clus
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
                1                92 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BK        TCGA-C5-A1BL        TCGA-C5-A1BM 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M7        TCGA-C5-A1M8        TCGA-C5-A1M9 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A1MF        TCGA-C5-A1MI        TCGA-C5-A1MJ        TCGA-C5-A1MP 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY        TCGA-C5-A2M1 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CJ        TCGA-C5-A7UC        TCGA-C5-A7UE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DR-A0ZL        TCGA-DR-A0ZM        TCGA-DS-A0VK        TCGA-DS-A0VL 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DS-A0VM        TCGA-DS-A0VN        TCGA-DS-A3LQ        TCGA-DS-A5RQ 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-DS-A7WF        TCGA-DS-A7WH        TCGA-DS-A7WI        TCGA-EA-A1QS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A1QT        TCGA-EA-A3HQ        TCGA-EA-A3HR        TCGA-EA-A3HS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A3HT        TCGA-EA-A3Y4        TCGA-EA-A43B        TCGA-EA-A44S 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EA-A6QX        TCGA-EK-A2RO        TCGA-EK-A3GK        TCGA-EX-A1H5 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-EX-A1H6        TCGA-EX-A3L1        TCGA-EX-A69L        TCGA-EX-A69M 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO        TCGA-FU-A3HY 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ        TCGA-FU-A3TX 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J        TCGA-FU-A57G 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ        TCGA-HM-A3JK 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-HM-A4S6        TCGA-IR-A3L7        TCGA-IR-A3LA        TCGA-IR-A3LB 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IR-A3LC        TCGA-IR-A3LF        TCGA-IR-A3LH        TCGA-IR-A3LI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-IR-A3LK        TCGA-IR-A3LL        TCGA-LP-A4AX        TCGA-MU-A51Y 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BF        TCGA-Q1-A5R1 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-Q1-A6DV        TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 

Clustering(8) Variable = 4Q GAIN MUTATION ANALYSIS
D8V1, survival
                   sevent
clus2                 0   1
  4Q GAIN MUTATED     3   0
  4Q GAIN WILD-TYPE 112  28
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                3               140 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                0                28 
$`4Q GAIN MUTATED`
TCGA-C5-A1MP TCGA-EK-A3GK TCGA-FU-A23K 
        3.58         0.10         1.22 

$`4Q GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ 
      144.16       177.04       173.29        82.85         5.46        19.86 
TCGA-C5-A1M5 TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF 
       67.46        31.40        46.32        30.21        35.01        53.16 
TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LS 
       38.99        35.61         2.73         2.43        40.93        44.22 
TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD 
       73.45        16.14        78.35        38.43         0.82        52.01 
TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL 
       18.02        17.85        25.35       101.82       134.33        15.48 
TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZL 
        9.67        17.19        85.55        60.69         9.34        87.75 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
       58.88        36.76         2.66       117.99       118.65        22.98 
TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A1QT 
       16.83        16.18         7.33         8.28         0.76         0.26 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 
        1.74         1.32         0.82         0.62         1.18        14.50 
TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO 
       14.50         1.81        12.66        12.82         0.26         1.48 
TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R 
       13.91         0.69        14.99        14.96         0.62         0.39 
TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB 
       12.59        45.96         6.64         0.53         0.59         0.07 
TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RM 
        4.04         0.03         0.36         1.18        23.70         2.24 
TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 
        0.10         0.07         0.10         0.03        20.35         7.92 
TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23L TCGA-FU-A2QG 
        6.94        14.70         4.47         6.12        23.84         0.92 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX 
        2.17         0.66         1.02         1.45         1.58         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA 
        0.82         3.52         1.35         1.32         1.97        25.41 
TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA 
       21.67        20.78        14.93         4.11       147.39       137.16 
TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK 
       66.81       117.40        96.95        78.71        81.96        26.56 
TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y 
       36.36        16.64         0.10         0.89         0.07        13.87 
TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 
        0.03        29.72         0.07         4.34         3.72         3.45 
TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 
        5.85         3.39         3.72         5.75         6.25         3.88 
TCGA-UC-A7PD TCGA-UC-A7PF 
       11.67        93.99 

  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
             0.10              0.03 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
             3.58            177.04 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
             1.22             12.74 
[1] "0.1 - 3.6 (1.2)"    "0.0 - 177.0 (12.7)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
[1] "hr="     "1200000"
D8V2, continuous
                   vv
clus                T1 T2+T3+T4
  4Q GAIN MUTATED    3        0
  4Q GAIN WILD-TYPE 78       32
D8V3, multiclass
          clus
vv         4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  T1                     3                78
  T2+T3+T4               0                32
D8V4, binary
                   cls
clus                 0  1
  4Q GAIN MUTATED    1  2
  4Q GAIN WILD-TYPE 72 34
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      1    2
  4Q GAIN WILD-TYPE   72   34
   clus
vv  4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  0               1                72
  1               2                34
                   vv
clus                M0 M1 MX
  4Q GAIN MUTATED    0  0  3
  4Q GAIN WILD-TYPE 61  3 50
D8V5, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  M0               0                61
  M1               0                 3
  MX               3                50
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  4Q GAIN MUTATED               0                                3
  4Q GAIN WILD-TYPE             2                              121
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  4Q GAIN MUTATED                                               0
  4Q GAIN WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  4Q GAIN MUTATED                                     1
  4Q GAIN WILD-TYPE                                  15
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  4Q GAIN MUTATED                                           0
  4Q GAIN WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  4Q GAIN MUTATED                                              0
  4Q GAIN WILD-TYPE                                            3
D8V6, multiclass
D8V7, binary
                   cls
clus                  0   1
  4Q GAIN MUTATED     0   4
  4Q GAIN WILD-TYPE  25 121
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      0    4
  4Q GAIN WILD-TYPE   25  121
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  NO                0                25
  YES               4               121
D8V8, continuous
D8V9, continuous

Clustering(9) Variable = 5P GAIN MUTATION ANALYSIS
D9V1, survival
                   sevent
clus2                0  1
  5P GAIN MUTATED   38  7
  5P GAIN WILD-TYPE 77 21
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               45                98 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
                7                21 
$`5P GAIN MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BJ TCGA-C5-A1BQ TCGA-C5-A1M6 TCGA-C5-A1M7 
       49.48        57.04       144.16        19.86        31.40        46.32 
TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2M1 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A7CL 
       40.93         3.58        38.43        52.01        18.02        15.48 
TCGA-C5-A7CM TCGA-C5-A7UE TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DS-A3LQ TCGA-EA-A1QS 
        9.67        85.55        60.69         9.34        22.98         0.76 
TCGA-EA-A3HR TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A5O9 TCGA-EA-A5ZF 
        1.32        14.50        14.50         1.81        13.91        14.96 
TCGA-EK-A2PG TCGA-EK-A2RJ TCGA-EK-A2RN TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 
        0.53         1.18         0.10         0.10         0.03        20.35 
TCGA-EX-A3L1 TCGA-EX-A69L TCGA-FU-A23L TCGA-FU-A3NI TCGA-FU-A5XV TCGA-HG-A2PA 
        6.94         4.47        23.84         1.45         1.97        25.41 
TCGA-HM-A3JJ TCGA-IR-A3LH TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-MY-A5BE 
       21.67        78.71        26.56        36.36        16.64         0.07 
TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DT 
        3.45         5.85         3.39 

$`5P GAIN WILD-TYPE`
TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BL 
       11.44        68.84        18.74        36.56       177.04       173.29 
TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF 
       82.85         5.46        67.46        30.21        35.01        53.16 
TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A2LS TCGA-C5-A2LV 
       38.99        35.61         2.73         2.43        44.22        73.45 
TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M2 TCGA-C5-A3HF TCGA-C5-A7CH TCGA-C5-A7CJ 
       16.14        78.35         0.82        17.85        25.35       101.82 
TCGA-C5-A7CK TCGA-C5-A7UC TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL 
      134.33        17.19        87.75        58.88        36.76         2.66 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI 
      117.99       118.65        16.83        16.18         7.33         8.28 
TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A44S 
        0.26         1.74         0.82         0.62         1.18        12.66 
TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A6QX 
       12.82         0.26         1.48         0.69        14.99         0.62 
TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2R7 TCGA-EK-A2RB 
        0.39        12.59        45.96         6.64         0.59         0.07 
TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A2RO 
        4.04         0.03         0.36        23.70         2.24         0.07 
TCGA-EK-A3GJ TCGA-EX-A1H6 TCGA-EX-A449 TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A2QG 
        0.10         7.92        14.70         6.12         1.22         0.92 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB 
        2.17         0.66         1.02         1.58         1.48         0.82 
TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 
        3.52         1.35         1.32        20.78        14.93         4.11 
TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LI 
      147.39       137.16        66.81       117.40        96.95        81.96 
TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD 
        0.10         0.89         0.07        13.87         0.03        29.72 
TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 
        4.34         3.72         3.72         5.75         6.25         3.88 
TCGA-UC-A7PD TCGA-UC-A7PF 
       11.67        93.99 

  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             0.03              0.03 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
           144.16            177.04 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
            14.96              8.10 
[1] "0.0 - 144.2 (15.0)" "0.0 - 177.0 (8.1)" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D9V2, continuous
                   vv
clus                T1 T2+T3+T4
  5P GAIN MUTATED   21       10
  5P GAIN WILD-TYPE 60       22
D9V3, multiclass
          clus
vv         5P GAIN MUTATED 5P GAIN WILD-TYPE
  T1                    21                60
  T2+T3+T4              10                22
D9V4, binary
                   cls
clus                 0  1
  5P GAIN MUTATED   21  8
  5P GAIN WILD-TYPE 52 28
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     21    8
  5P GAIN WILD-TYPE   52   28
   clus
vv  5P GAIN MUTATED 5P GAIN WILD-TYPE
  0              21                52
  1               8                28
                   vv
clus                M0 M1 MX
  5P GAIN MUTATED   18  0 16
  5P GAIN WILD-TYPE 43  3 37
D9V5, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  M0              18                43
  M1               0                 3
  MX              16                37
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  5P GAIN MUTATED               0                               47
  5P GAIN WILD-TYPE             2                               77
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  5P GAIN MUTATED                                               1
  5P GAIN WILD-TYPE                                             3
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  5P GAIN MUTATED                                     3
  5P GAIN WILD-TYPE                                  13
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  5P GAIN MUTATED                                           0
  5P GAIN WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  5P GAIN MUTATED                                              0
  5P GAIN WILD-TYPE                                            3
D9V6, multiclass
D9V7, binary
                   cls
clus                 0  1
  5P GAIN MUTATED    6 45
  5P GAIN WILD-TYPE 19 80
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED      6   45
  5P GAIN WILD-TYPE   19   80
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  NO                6                19
  YES              45                80
D9V8, continuous
D9V9, continuous

Clustering(10) Variable = 5Q GAIN MUTATION ANALYSIS
D10V1, survival
                   sevent
clus2                0  1
  5Q GAIN MUTATED   16  4
  5Q GAIN WILD-TYPE 99 24
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               20               123 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
                4                24 
$`5Q GAIN MUTATED`
TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1MN TCGA-C5-A7CM TCGA-C5-A7UH TCGA-C5-A7X3 
       31.40        46.32        40.93         9.67        60.69         9.34 
TCGA-EA-A1QS TCGA-EA-A5O9 TCGA-EK-A2PG TCGA-EK-A2RN TCGA-EX-A1H5 TCGA-EX-A3L1 
        0.76        13.91         0.53         0.10        20.35         6.94 
TCGA-EX-A69L TCGA-FU-A5XV TCGA-IR-A3LK TCGA-IR-A3LL TCGA-MY-A5BE TCGA-Q1-A5R2 
        4.47         1.97        26.56        36.36         0.07         3.45 
TCGA-Q1-A5R3 TCGA-Q1-A6DT 
        5.85         3.39 

$`5Q GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ 
      144.16       177.04       173.29        82.85         5.46        19.86 
TCGA-C5-A1M5 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MI 
       67.46        30.21        35.01        53.16        38.99        35.61 
TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LX 
        2.73         2.43         3.58        44.22        73.45        16.14 
TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF 
       78.35        38.43         0.82        52.01        18.02        17.85 
TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7UC TCGA-C5-A7UE 
       25.35       101.82       134.33        15.48        17.19        85.55 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN 
       87.75        58.88        36.76         2.66       117.99       118.65 
TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QT 
       22.98        16.83        16.18         7.33         8.28         0.26 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 
        1.74         1.32         0.82         0.62         1.18        14.50 
TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO 
       14.50         1.81        12.66        12.82         0.26         1.48 
TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2GZ 
        0.69        14.99        14.96         0.62         0.39        12.59 
TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD 
       45.96         6.64         0.59         0.07         4.04         0.03 
TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A2RO TCGA-EK-A3GJ 
        0.36         1.18        23.70         2.24         0.07         0.10 
TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H6 TCGA-EX-A449 TCGA-EX-A69M TCGA-FU-A23K 
        0.10         0.03         7.92        14.70         6.12         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI 
       23.84         0.92         2.17         0.66         1.02         1.45 
TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G 
        1.58         1.48         0.82         3.52         1.35         1.32 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 
       25.41        21.67        20.78        14.93         4.11       147.39 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI 
      137.16        66.81       117.40        96.95        78.71        81.96 
TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI 
       16.64         0.10         0.89         0.07        13.87         0.03 
TCGA-MY-A5BD TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R 
       29.72         4.34         3.72         3.72         5.75         6.25 
TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        3.88        11.67        93.99 

  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
             0.07              0.03 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
            60.69            177.04 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
             8.14             12.82 
[1] "0.1 - 60.7 (8.1)"   "0.0 - 177.0 (12.8)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D10V2, continuous
                   vv
clus                T1 T2+T3+T4
  5Q GAIN MUTATED    8        3
  5Q GAIN WILD-TYPE 73       29
D10V3, multiclass
          clus
vv         5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  T1                     8                73
  T2+T3+T4               3                29
D10V4, binary
                   cls
clus                 0  1
  5Q GAIN MUTATED    8  3
  5Q GAIN WILD-TYPE 65 33
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      8    3
  5Q GAIN WILD-TYPE   65   33
   clus
vv  5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  0               8                65
  1               3                33
                   vv
clus                M0 M1 MX
  5Q GAIN MUTATED    6  0  8
  5Q GAIN WILD-TYPE 55  3 45
D10V5, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  M0               6                55
  M1               0                 3
  MX               8                45
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  5Q GAIN MUTATED               0                               20
  5Q GAIN WILD-TYPE             2                              104
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  5Q GAIN MUTATED                                               1
  5Q GAIN WILD-TYPE                                             3
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  5Q GAIN MUTATED                                     1
  5Q GAIN WILD-TYPE                                  15
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  5Q GAIN MUTATED                                           0
  5Q GAIN WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  5Q GAIN MUTATED                                              0
  5Q GAIN WILD-TYPE                                            3
D10V6, multiclass
D10V7, binary
                   cls
clus                  0   1
  5Q GAIN MUTATED     3  19
  5Q GAIN WILD-TYPE  22 106
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      3   19
  5Q GAIN WILD-TYPE   22  106
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  NO                3                22
  YES              19               106
D10V8, continuous
D10V9, continuous

Clustering(11) Variable = 6P GAIN MUTATION ANALYSIS
D11V1, survival
                   sevent
clus2                0  1
  6P GAIN MUTATED   21  8
  6P GAIN WILD-TYPE 94 20
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               29               114 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
                8                20 
$`6P GAIN MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BN TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M9 
       49.48        57.04         5.46        31.40        46.32        35.01 
TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A2LY TCGA-C5-A3HD TCGA-C5-A3HF TCGA-C5-A7CH 
       38.99        35.61        78.35        52.01        17.85        25.35 
TCGA-C5-A7UE TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A5ZF 
       85.55         8.28         0.76        14.50         1.81        14.96 
TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A57G TCGA-HG-A2PA TCGA-IR-A3LF TCGA-IR-A3LH 
        1.22        23.84         1.32        25.41        96.95        78.71 
TCGA-LP-A4AU TCGA-LP-A4AX TCGA-MU-A5YI TCGA-Q1-A5R2 TCGA-UC-A7PD 
        0.10         0.07         0.03         3.45        11.67 

$`6P GAIN WILD-TYPE`
TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BJ TCGA-C5-A1BK 
       11.44        68.84        18.74        36.56       144.16       177.04 
TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BQ TCGA-C5-A1M5 TCGA-C5-A1M8 TCGA-C5-A1MF 
      173.29        82.85        19.86        67.46        30.21        53.16 
TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV 
        2.73         2.43        40.93         3.58        44.22        73.45 
TCGA-C5-A2LX TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HE TCGA-C5-A7CJ TCGA-C5-A7CK 
       16.14        38.43         0.82        18.02       101.82       134.33 
TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZL 
       15.48         9.67        17.19        60.69         9.34        87.75 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
       58.88        36.76         2.66       117.99       118.65        22.98 
TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR 
       16.83        16.18         7.33         0.26         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A44S TCGA-EA-A4BA 
        0.82         0.62         1.18        14.50        12.66        12.82 
TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A6QX 
        0.26         1.48        13.91         0.69        14.99         0.62 
TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2R7 
        0.39        12.59        45.96         6.64         0.53         0.59 
TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL 
        0.07         4.04         0.03         0.36         1.18        23.70 
TCGA-EK-A2RM TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN 
        2.24         0.10         0.07         0.10         0.10         0.03 
TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M 
       20.35         7.92         6.94        14.70         4.47         6.12 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ 
        0.92         2.17         0.66         1.02         1.45         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A5XV TCGA-HM-A3JJ 
        1.48         0.82         3.52         1.35         1.97        21.67 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB 
       20.78        14.93         4.11       147.39       137.16        66.81 
TCGA-IR-A3LC TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AW 
      117.40        81.96        26.56        36.36        16.64         0.89 
TCGA-MU-A51Y TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R3 
       13.87        29.72         0.07         4.34         3.72         5.85 
TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PF 
        3.39         3.72         5.75         6.25         3.88        93.99 

  6P GAIN MUTATED 6P GAIN WILD-TYPE 
             0.03              0.03 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
            96.95            177.04 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
            23.84              8.63 
[1] "0.0 - 97.0 (23.8)" "0.0 - 177.0 (8.6)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D11V2, continuous
                   vv
clus                T1 T2+T3+T4
  6P GAIN MUTATED   14        7
  6P GAIN WILD-TYPE 67       25
D11V3, multiclass
          clus
vv         6P GAIN MUTATED 6P GAIN WILD-TYPE
  T1                    14                67
  T2+T3+T4               7                25
D11V4, binary
                   cls
clus                 0  1
  6P GAIN MUTATED   13  6
  6P GAIN WILD-TYPE 60 30
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED     13    6
  6P GAIN WILD-TYPE   60   30
   clus
vv  6P GAIN MUTATED 6P GAIN WILD-TYPE
  0              13                60
  1               6                30
                   vv
clus                M0 M1 MX
  6P GAIN MUTATED   15  0  7
  6P GAIN WILD-TYPE 46  3 46
D11V5, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  M0              15                46
  M1               0                 3
  MX               7                46
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  6P GAIN MUTATED               0                               27
  6P GAIN WILD-TYPE             2                               97
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  6P GAIN MUTATED                                               1
  6P GAIN WILD-TYPE                                             3
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  6P GAIN MUTATED                                     2
  6P GAIN WILD-TYPE                                  14
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  6P GAIN MUTATED                                           0
  6P GAIN WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  6P GAIN MUTATED                                              1
  6P GAIN WILD-TYPE                                            2
D11V6, multiclass
D11V7, binary
                   cls
clus                  0   1
  6P GAIN MUTATED     7  24
  6P GAIN WILD-TYPE  18 101
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      7   24
  6P GAIN WILD-TYPE   18  101
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  NO                7                18
  YES              24               101
D11V8, continuous
D11V9, continuous

Clustering(12) Variable = 6Q GAIN MUTATION ANALYSIS
D12V1, survival
                   sevent
clus2                 0   1
  6Q GAIN MUTATED     9   7
  6Q GAIN WILD-TYPE 106  21
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               16               127 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
                7                21 
$`6Q GAIN MUTATED`
TCGA-BI-A0VS TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M9 TCGA-C5-A1MH TCGA-C5-A1MI 
       57.04        31.40        46.32        35.01        38.99        35.61 
TCGA-C5-A3HD TCGA-C5-A3HF TCGA-C5-A7UE TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A439 
       52.01        17.85        85.55         8.28         0.76        14.50 
TCGA-EA-A43B TCGA-HG-A2PA TCGA-IR-A3LH TCGA-UC-A7PD 
        1.81        25.41        78.71        11.67 

$`6Q GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BJ 
       49.48        11.44        68.84        18.74        36.56       144.16 
TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 
      177.04       173.29        82.85         5.46        19.86        67.46 
TCGA-C5-A1M8 TCGA-C5-A1MF TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP 
       30.21        53.16         2.73         2.43        40.93         3.58 
TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 
       44.22        73.45        16.14        78.35        38.43         0.82 
TCGA-C5-A3HE TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM 
       18.02        25.35       101.82       134.33        15.48         9.67 
TCGA-C5-A7UC TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
       17.19        60.69         9.34        87.75        58.88        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF 
        2.66       117.99       118.65        22.98        16.83        16.18 
TCGA-DS-A7WH TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
        7.33         0.26         1.74         1.32         0.82         0.62 
TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO 
        1.18        14.50        12.66        12.82         0.26         1.48 
TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R 
       13.91         0.69        14.99        14.96         0.62         0.39 
TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB 
       12.59        45.96         6.64         0.53         0.59         0.07 
TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RM 
        4.04         0.03         0.36         1.18        23.70         2.24 
TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 
        0.10         0.07         0.10         0.10         0.03        20.35 
TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K 
        7.92         6.94        14.70         4.47         6.12         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI 
       23.84         0.92         2.17         0.66         1.02         1.45 
TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G 
        1.58         1.48         0.82         3.52         1.35         1.32 
TCGA-FU-A5XV TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 
        1.97        21.67        20.78        14.93         4.11       147.39 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LI TCGA-IR-A3LK 
      137.16        66.81       117.40        96.95        81.96        26.56 
TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y 
       36.36        16.64         0.10         0.89         0.07        13.87 
TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 
        0.03        29.72         0.07         4.34         3.72         3.45 
TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 
        5.85         3.39         3.72         5.75         6.25         3.88 
TCGA-UC-A7PF 
       93.99 

  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
             0.76              0.03 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
            85.55            177.04 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
           33.205             7.920 
[1] "0.8 - 85.5 (33.2)" "0.0 - 177.0 (7.9)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
[1] "hr=" "1.9"
D12V2, continuous
                   vv
clus                T1 T2+T3+T4
  6Q GAIN MUTATED    7        4
  6Q GAIN WILD-TYPE 74       28
D12V3, multiclass
          clus
vv         6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  T1                     7                74
  T2+T3+T4               4                28
D12V4, binary
                   cls
clus                 0  1
  6Q GAIN MUTATED    8  3
  6Q GAIN WILD-TYPE 65 33
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      8    3
  6Q GAIN WILD-TYPE   65   33
   clus
vv  6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  0               8                65
  1               3                33
                   vv
clus                M0 M1 MX
  6Q GAIN MUTATED    9  0  2
  6Q GAIN WILD-TYPE 52  3 51
D12V5, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  M0               9                52
  M1               0                 3
  MX               2                51
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  6Q GAIN MUTATED               0                               15
  6Q GAIN WILD-TYPE             2                              109
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  6Q GAIN MUTATED                                               0
  6Q GAIN WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  6Q GAIN MUTATED                                     1
  6Q GAIN WILD-TYPE                                  15
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  6Q GAIN MUTATED                                           0
  6Q GAIN WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  6Q GAIN MUTATED                                              1
  6Q GAIN WILD-TYPE                                            2
D12V6, multiclass
D12V7, binary
                   cls
clus                  0   1
  6Q GAIN MUTATED     5  12
  6Q GAIN WILD-TYPE  20 113
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      5   12
  6Q GAIN WILD-TYPE   20  113
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  NO                5                20
  YES              12               113
D12V8, continuous
D12V9, continuous

Clustering(13) Variable = 7P GAIN MUTATION ANALYSIS
D13V1, survival
                   sevent
clus2                 0   1
  7P GAIN MUTATED    13   3
  7P GAIN WILD-TYPE 102  25
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               16               127 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
                3                25 
$`7P GAIN MUTATED`
TCGA-C5-A1BL TCGA-C5-A1MK TCGA-C5-A2LY TCGA-C5-A7CH TCGA-C5-A7UC TCGA-C5-A7UH 
      173.29         2.43        78.35        25.35        17.19        60.69 
TCGA-EA-A50E TCGA-EK-A2GZ TCGA-EK-A2PG TCGA-EK-A2RB TCGA-EK-A2RE TCGA-EK-A2RJ 
        0.26        12.59         0.53         0.07         0.36         1.18 
TCGA-FU-A23L TCGA-FU-A40J TCGA-IR-A3LL TCGA-Q1-A6DT 
       23.84         1.35        36.36         3.39 

$`7P GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 
      144.16       177.04        82.85         5.46        19.86        67.46 
TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF TCGA-C5-A1MH 
       31.40        46.32        30.21        35.01        53.16        38.99 
TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV 
       35.61         2.73        40.93         3.58        44.22        73.45 
TCGA-C5-A2LX TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF 
       16.14        38.43         0.82        52.01        18.02        17.85 
TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UE TCGA-C5-A7X3 
      101.82       134.33        15.48         9.67        85.55         9.34 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN 
       87.75        58.88        36.76         2.66       117.99       118.65 
TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS 
       22.98        16.83        16.18         7.33         8.28         0.76 
TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE 
        0.26         1.74         1.32         0.82         0.62         1.18 
TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A5FO 
       14.50        14.50         1.81        12.66        12.82         1.48 
TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R 
       13.91         0.69        14.99        14.96         0.62         0.39 
TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2R7 TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RL 
       45.96         6.64         0.59         4.04         0.03        23.70 
TCGA-EK-A2RM TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN 
        2.24         0.10         0.07         0.10         0.10         0.03 
TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M 
       20.35         7.92         6.94        14.70         4.47         6.12 
TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI 
        1.22         0.92         2.17         0.66         1.02         1.45 
TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-FU-A5XV 
        1.58         1.48         0.82         3.52         1.32         1.97 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 
       25.41        21.67        20.78        14.93         4.11       147.39 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI 
      137.16        66.81       117.40        96.95        78.71        81.96 
TCGA-IR-A3LK TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y 
       26.56        16.64         0.10         0.89         0.07        13.87 
TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 
        0.03        29.72         0.07         4.34         3.72         3.45 
TCGA-Q1-A5R3 TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD 
        5.85         3.72         5.75         6.25         3.88        11.67 
TCGA-UC-A7PF 
       93.99 

  7P GAIN MUTATED 7P GAIN WILD-TYPE 
             0.07              0.03 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           173.29            177.04 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
             7.99             12.66 
[1] "0.1 - 173.3 (8.0)"  "0.0 - 177.0 (12.7)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D13V2, continuous
                   vv
clus                T1 T2+T3+T4
  7P GAIN MUTATED    5        4
  7P GAIN WILD-TYPE 76       28
D13V3, multiclass
          clus
vv         7P GAIN MUTATED 7P GAIN WILD-TYPE
  T1                     5                76
  T2+T3+T4               4                28
D13V4, binary
                   cls
clus                 0  1
  7P GAIN MUTATED    6  3
  7P GAIN WILD-TYPE 67 33
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED      6    3
  7P GAIN WILD-TYPE   67   33
   clus
vv  7P GAIN MUTATED 7P GAIN WILD-TYPE
  0               6                67
  1               3                33
                   vv
clus                M0 M1 MX
  7P GAIN MUTATED    5  0  5
  7P GAIN WILD-TYPE 56  3 48
D13V5, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  M0               5                56
  M1               0                 3
  MX               5                48
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  7P GAIN MUTATED               0                               15
  7P GAIN WILD-TYPE             2                              109
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  7P GAIN MUTATED                                               0
  7P GAIN WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  7P GAIN MUTATED                                     1
  7P GAIN WILD-TYPE                                  15
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  7P GAIN MUTATED                                           0
  7P GAIN WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  7P GAIN MUTATED                                              0
  7P GAIN WILD-TYPE                                            3
D13V6, multiclass
D13V7, binary
                   cls
clus                  0   1
  7P GAIN MUTATED     3  13
  7P GAIN WILD-TYPE  22 112
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED      3   13
  7P GAIN WILD-TYPE   22  112
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  NO                3                22
  YES              13               112
D13V8, continuous
[1] "Remove cluster labels:" "7P GAIN MUTATED"       
clus
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
                1                42 
       TCGA-BI-A0VR        TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-C5-A1BN        TCGA-C5-A1BQ        TCGA-C5-A1M7        TCGA-C5-A1MF 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-C5-A1MH        TCGA-C5-A1MI        TCGA-C5-A1MN        TCGA-C5-A2LS 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2M2        TCGA-C5-A3HD 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CJ        TCGA-C5-A7CK        TCGA-C5-A7CL 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-C5-A7UE        TCGA-DR-A0ZM        TCGA-DS-A5RQ        TCGA-DS-A7WF 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-EX-A1H5        TCGA-FU-A2QG        TCGA-FU-A3EO        TCGA-FU-A3HY 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-FU-A3TQ        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A5XV 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7        TCGA-IR-A3LB 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-JW-A5VI        TCGA-MU-A5YI        TCGA-Q1-A6DW 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
D13V9, continuous

Clustering(14) Variable = 7Q GAIN MUTATION ANALYSIS
D14V1, survival
                   sevent
clus2                 0   1
  7Q GAIN MUTATED    13   2
  7Q GAIN WILD-TYPE 102  26
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               15               128 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
                2                26 
$`7Q GAIN MUTATED`
TCGA-C5-A1BL TCGA-C5-A1MF TCGA-C5-A1MK TCGA-C5-A2LY TCGA-C5-A7UC TCGA-C5-A7UH 
      173.29        53.16         2.43        78.35        17.19        60.69 
TCGA-DR-A0ZL TCGA-DS-A3LQ TCGA-EK-A2GZ TCGA-EK-A2PG TCGA-EK-A2RB TCGA-EK-A2RJ 
       87.75        22.98        12.59         0.53         0.07         1.18 
TCGA-FU-A23L TCGA-FU-A3NI TCGA-IR-A3LL 
       23.84         1.45        36.36 

$`7Q GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 
      144.16       177.04        82.85         5.46        19.86        67.46 
TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MH TCGA-C5-A1MI 
       31.40        46.32        30.21        35.01        38.99        35.61 
TCGA-C5-A1MJ TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LX 
        2.73        40.93         3.58        44.22        73.45        16.14 
TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CH 
       38.43         0.82        52.01        18.02        17.85        25.35 
TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UE TCGA-C5-A7X3 
      101.82       134.33        15.48         9.67        85.55         9.34 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ 
       58.88        36.76         2.66       117.99       118.65        16.83 
TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ 
       16.18         7.33         8.28         0.76         0.26         1.74 
TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A439 
        1.32         0.82         0.62         1.18        14.50        14.50 
TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 
        1.81        12.66        12.82         0.26         1.48        13.91 
TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2H0 
        0.69        14.99        14.96         0.62         0.39        45.96 
TCGA-EK-A2IP TCGA-EK-A2R7 TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RL 
        6.64         0.59         4.04         0.03         0.36        23.70 
TCGA-EK-A2RM TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN 
        2.24         0.10         0.07         0.10         0.10         0.03 
TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M 
       20.35         7.92         6.94        14.70         4.47         6.12 
TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ 
        1.22         0.92         2.17         0.66         1.02         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV 
        1.48         0.82         3.52         1.35         1.32         1.97 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 
       25.41        21.67        20.78        14.93         4.11       147.39 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI 
      137.16        66.81       117.40        96.95        78.71        81.96 
TCGA-IR-A3LK TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y 
       26.56        16.64         0.10         0.89         0.07        13.87 
TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 
        0.03        29.72         0.07         4.34         3.72         3.45 
TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 
        5.85         3.39         3.72         5.75         6.25         3.88 
TCGA-UC-A7PD TCGA-UC-A7PF 
       11.67        93.99 

  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
             0.07              0.03 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           173.29            177.04 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           22.980            10.555 
[1] "0.1 - 173.3 (23.0)" "0.0 - 177.0 (10.6)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
[1] "hr=" "2.1"
D14V2, continuous
                   vv
clus                T1 T2+T3+T4
  7Q GAIN MUTATED    8        2
  7Q GAIN WILD-TYPE 73       30
D14V3, multiclass
          clus
vv         7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  T1                     8                73
  T2+T3+T4               2                30
D14V4, binary
                   cls
clus                 0  1
  7Q GAIN MUTATED    7  3
  7Q GAIN WILD-TYPE 66 33
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED      7    3
  7Q GAIN WILD-TYPE   66   33
   clus
vv  7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  0               7                66
  1               3                33
                   vv
clus                M0 M1 MX
  7Q GAIN MUTATED    6  0  4
  7Q GAIN WILD-TYPE 55  3 49
D14V5, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  M0               6                55
  M1               0                 3
  MX               4                49
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  7Q GAIN MUTATED               0                               15
  7Q GAIN WILD-TYPE             2                              109
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  7Q GAIN MUTATED                                               0
  7Q GAIN WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  7Q GAIN MUTATED                                     0
  7Q GAIN WILD-TYPE                                  16
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  7Q GAIN MUTATED                                           0
  7Q GAIN WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  7Q GAIN MUTATED                                              0
  7Q GAIN WILD-TYPE                                            3
D14V6, multiclass
D14V7, binary
                   cls
clus                  0   1
  7Q GAIN MUTATED     5  10
  7Q GAIN WILD-TYPE  20 115
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED      5   10
  7Q GAIN WILD-TYPE   20  115
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  NO                5                20
  YES              10               115
D14V8, continuous
[1] "Remove cluster labels:" "7Q GAIN MUTATED"       
clus
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
                2                41 
       TCGA-BI-A0VR        TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A1BN        TCGA-C5-A1BQ        TCGA-C5-A1M7        TCGA-C5-A1MH 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A1MI        TCGA-C5-A1MN        TCGA-C5-A2LS        TCGA-C5-A2LV 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A2LX        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HF 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-C5-A7CJ        TCGA-C5-A7CK        TCGA-C5-A7CL        TCGA-C5-A7UE 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-DR-A0ZM        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-EX-A1H5 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FU-A2QG        TCGA-FU-A3EO        TCGA-FU-A3HY        TCGA-FU-A3TQ 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A5XV        TCGA-HM-A4S6 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-HM-A6W2        TCGA-IR-A3L7        TCGA-IR-A3LB        TCGA-IR-A3LH 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-MU-A5YI        TCGA-Q1-A6DW        TCGA-RA-A741 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-UC-A7PD 
"7Q GAIN WILD-TYPE" 
D14V9, continuous

Clustering(15) Variable = 8P GAIN MUTATION ANALYSIS
D15V1, survival
                   sevent
clus2                0  1
  8P GAIN MUTATED   17  6
  8P GAIN WILD-TYPE 98 22
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               23               120 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
                6                22 
$`8P GAIN MUTATED`
TCGA-BI-A0VS TCGA-C5-A1BM TCGA-C5-A1BQ TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MH 
       57.04        82.85        19.86        67.46        53.16        38.99 
TCGA-C5-A1MI TCGA-C5-A1MP TCGA-C5-A3HE TCGA-C5-A7CH TCGA-C5-A7UH TCGA-DS-A3LQ 
       35.61         3.58        18.02        25.35        60.69        22.98 
TCGA-EA-A3HQ TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5O9 TCGA-EK-A2RN TCGA-FU-A3YQ 
        1.74        12.82         0.26        13.91         0.10         3.52 
TCGA-FU-A57G TCGA-IR-A3LL TCGA-MY-A5BF TCGA-Q1-A5R2 TCGA-Q1-A6DW 
        1.32        36.36         4.34         3.45         5.75 

$`8P GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BJ 
       49.48        11.44        68.84        18.74        36.56       144.16 
TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BN TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 
      177.04       173.29         5.46        31.40        46.32        30.21 
TCGA-C5-A1M9 TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LS TCGA-C5-A2LV 
       35.01         2.73         2.43        40.93        44.22        73.45 
TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HF 
       16.14        78.35        38.43         0.82        52.01        17.85 
TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE 
      101.82       134.33        15.48         9.67        17.19        85.55 
TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM 
        9.34        87.75        58.88        36.76         2.66       117.99 
TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS 
      118.65        16.83        16.18         7.33         8.28         0.76 
TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 
        0.26         1.32         0.82         0.62         1.18        14.50 
TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A5FO TCGA-EA-A5ZD TCGA-EA-A5ZE 
       14.50         1.81        12.66         1.48         0.69        14.99 
TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP 
       14.96         0.62         0.39        12.59        45.96         6.64 
TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE 
        0.53         0.59         0.07         4.04         0.03         0.36 
TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK 
        1.18        23.70         2.24         0.07         0.10         0.10 
TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L 
        0.03        20.35         7.92         6.94        14.70         4.47 
TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY 
        6.12         1.22        23.84         0.92         2.17         0.66 
TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A40J 
        1.02         1.45         1.58         1.48         0.82         1.35 
TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 
        1.97        25.41        21.67        20.78        14.93         4.11 
TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH 
      147.39       137.16        66.81       117.40        96.95        78.71 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX 
       81.96        26.56        16.64         0.10         0.89         0.07 
TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-Q1-A5R1 TCGA-Q1-A5R3 
       13.87         0.03        29.72         0.07         3.72         5.85 
TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        3.39         3.72         6.25         3.88        11.67        93.99 

  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             0.10              0.03 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
            82.85            177.04 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
           18.020            10.555 
[1] "0.1 - 82.8 (18.0)"  "0.0 - 177.0 (10.6)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D15V2, continuous
                   vv
clus                T1 T2+T3+T4
  8P GAIN MUTATED   11        6
  8P GAIN WILD-TYPE 70       26
D15V3, multiclass
          clus
vv         8P GAIN MUTATED 8P GAIN WILD-TYPE
  T1                    11                70
  T2+T3+T4               6                26
D15V4, binary
                   cls
clus                 0  1
  8P GAIN MUTATED   11  6
  8P GAIN WILD-TYPE 62 30
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED     11    6
  8P GAIN WILD-TYPE   62   30
   clus
vv  8P GAIN MUTATED 8P GAIN WILD-TYPE
  0              11                62
  1               6                30
                   vv
clus                M0 M1 MX
  8P GAIN MUTATED   10  0  9
  8P GAIN WILD-TYPE 51  3 44
D15V5, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  M0              10                51
  M1               0                 3
  MX               9                44
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  8P GAIN MUTATED               0                               22
  8P GAIN WILD-TYPE             2                              102
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  8P GAIN MUTATED                                               0
  8P GAIN WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  8P GAIN MUTATED                                     2
  8P GAIN WILD-TYPE                                  14
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  8P GAIN MUTATED                                           0
  8P GAIN WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  8P GAIN MUTATED                                              0
  8P GAIN WILD-TYPE                                            3
D15V6, multiclass
D15V7, binary
                   cls
clus                  0   1
  8P GAIN MUTATED     5  19
  8P GAIN WILD-TYPE  20 106
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED      5   19
  8P GAIN WILD-TYPE   20  106
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  NO                5                20
  YES              19               106
D15V8, continuous
D15V9, continuous

Clustering(16) Variable = 8Q GAIN MUTATION ANALYSIS
D16V1, survival
                   sevent
clus2                0  1
  8Q GAIN MUTATED   33  6
  8Q GAIN WILD-TYPE 82 22
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               39               104 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
                6                22 
$`8Q GAIN MUTATED`
TCGA-BI-A0VS TCGA-C5-A1BM TCGA-C5-A1BQ TCGA-C5-A1M5 TCGA-C5-A1MF TCGA-C5-A1MH 
       57.04        82.85        19.86        67.46        53.16        38.99 
TCGA-C5-A1MI TCGA-C5-A1MP TCGA-C5-A2LV TCGA-C5-A3HE TCGA-C5-A7CH TCGA-C5-A7UH 
       35.61         3.58        73.45        18.02        25.35        60.69 
TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-EA-A3HQ TCGA-EA-A3Y4 TCGA-EA-A4BA TCGA-EA-A50E 
      117.99        22.98         1.74        14.50        12.82         0.26 
TCGA-EA-A5O9 TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2RN TCGA-EK-A3GJ 
       13.91        45.96         6.64         0.53         0.10         0.10 
TCGA-EK-A3GN TCGA-EX-A69M TCGA-FU-A23L TCGA-FU-A3NI TCGA-FU-A3YQ TCGA-FU-A57G 
        0.03         6.12        23.84         1.45         3.52         1.32 
TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AX TCGA-MU-A5YI TCGA-MY-A5BF TCGA-Q1-A5R2 
       36.36         0.10         0.07         0.03         4.34         3.45 
TCGA-Q1-A6DT TCGA-Q1-A6DW TCGA-RA-A741 
        3.39         5.75         3.88 

$`8Q GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BJ 
       49.48        11.44        68.84        18.74        36.56       144.16 
TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BN TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 
      177.04       173.29         5.46        31.40        46.32        30.21 
TCGA-C5-A1M9 TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LS TCGA-C5-A2LX 
       35.01         2.73         2.43        40.93        44.22        16.14 
TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HF TCGA-C5-A7CJ 
       78.35        38.43         0.82        52.01        17.85       101.82 
TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7X3 
      134.33        15.48         9.67        17.19        85.55         9.34 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VN TCGA-DS-A5RQ 
       87.75        58.88        36.76         2.66       118.65        16.83 
TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HR 
       16.18         7.33         8.28         0.76         0.26         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S 
        0.82         0.62         1.18        14.50         1.81        12.66 
TCGA-EA-A5FO TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R 
        1.48         0.69        14.99        14.96         0.62         0.39 
TCGA-EK-A2GZ TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE 
       12.59         0.59         0.07         4.04         0.03         0.36 
TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A2RO TCGA-EK-A3GK TCGA-EX-A1H5 
        1.18        23.70         2.24         0.07         0.10        20.35 
TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-FU-A23K TCGA-FU-A2QG 
        7.92         6.94        14.70         4.47         1.22         0.92 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB 
        2.17         0.66         1.02         1.58         1.48         0.82 
TCGA-FU-A40J TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 
        1.35         1.97        25.41        21.67        20.78        14.93 
TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF 
        4.11       147.39       137.16        66.81       117.40        96.95 
TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-JW-A5VI TCGA-LP-A4AW TCGA-MU-A51Y 
       78.71        81.96        26.56        16.64         0.89        13.87 
TCGA-MY-A5BD TCGA-MY-A5BE TCGA-Q1-A5R1 TCGA-Q1-A5R3 TCGA-Q1-A6DV TCGA-Q1-A73R 
       29.72         0.07         3.72         5.85         3.72         6.25 
TCGA-UC-A7PD TCGA-UC-A7PF 
       11.67        93.99 

  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             0.03              0.03 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           117.99            177.04 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
            6.640            12.625 
[1] "0.0 - 118.0 (6.6)"  "0.0 - 177.0 (12.6)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D16V2, continuous
                   vv
clus                T1 T2+T3+T4
  8Q GAIN MUTATED   21        8
  8Q GAIN WILD-TYPE 60       24
D16V3, multiclass
          clus
vv         8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  T1                    21                60
  T2+T3+T4               8                24
D16V4, binary
                   cls
clus                 0  1
  8Q GAIN MUTATED   18 10
  8Q GAIN WILD-TYPE 55 26
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     18   10
  8Q GAIN WILD-TYPE   55   26
   clus
vv  8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  0              18                55
  1              10                26
                   vv
clus                M0 M1 MX
  8Q GAIN MUTATED   15  0 16
  8Q GAIN WILD-TYPE 46  3 37
D16V5, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  M0              15                46
  M1               0                 3
  MX              16                37
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  8Q GAIN MUTATED               0                               39
  8Q GAIN WILD-TYPE             2                               85
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  8Q GAIN MUTATED                                               0
  8Q GAIN WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  8Q GAIN MUTATED                                     2
  8Q GAIN WILD-TYPE                                  14
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  8Q GAIN MUTATED                                           0
  8Q GAIN WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  8Q GAIN MUTATED                                              0
  8Q GAIN WILD-TYPE                                            3
D16V6, multiclass
D16V7, binary
                   cls
clus                 0  1
  8Q GAIN MUTATED    5 36
  8Q GAIN WILD-TYPE 20 89
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED      5   36
  8Q GAIN WILD-TYPE   20   89
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  NO                5                20
  YES              36                89
D16V8, continuous
D16V9, continuous

Clustering(17) Variable = 9P GAIN MUTATION ANALYSIS
D17V1, survival
                   sevent
clus2                 0   1
  9P GAIN MUTATED    14   3
  9P GAIN WILD-TYPE 101  25
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               17               126 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                3                25 
$`9P GAIN MUTATED`
TCGA-C5-A1MP TCGA-C5-A2LV TCGA-C5-A2M2 TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7UE 
        3.58        73.45         0.82       134.33        15.48        85.55 
TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A5ZE TCGA-EK-A2RN TCGA-EX-A3L1 TCGA-FU-A3TX 
       22.98        16.83        14.99         0.10         6.94         1.48 
TCGA-FU-A40J TCGA-IR-A3LL TCGA-LP-A4AU TCGA-MY-A5BE TCGA-UC-A7PD 
        1.35        36.36         0.10         0.07        11.67 

$`9P GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ 
      144.16       177.04       173.29        82.85         5.46        19.86 
TCGA-C5-A1M5 TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF 
       67.46        31.40        46.32        30.21        35.01        53.16 
TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LS 
       38.99        35.61         2.73         2.43        40.93        44.22 
TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF 
       16.14        78.35        38.43        52.01        18.02        17.85 
TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UH TCGA-C5-A7X3 
       25.35       101.82         9.67        17.19        60.69         9.34 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN 
       87.75        58.88        36.76         2.66       117.99       118.65 
TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ 
       16.18         7.33         8.28         0.76         0.26         1.74 
TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A439 
        1.32         0.82         0.62         1.18        14.50        14.50 
TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 
        1.81        12.66        12.82         0.26         1.48        13.91 
TCGA-EA-A5ZD TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 
        0.69        14.96         0.62         0.39        12.59        45.96 
TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD 
        6.64         0.53         0.59         0.07         4.04         0.03 
TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A2RO TCGA-EK-A3GJ 
        0.36         1.18        23.70         2.24         0.07         0.10 
TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A449 TCGA-EX-A69L 
        0.10         0.03        20.35         7.92        14.70         4.47 
TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY 
        6.12         1.22        23.84         0.92         2.17         0.66 
TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G 
        1.02         1.45         1.58         0.82         3.52         1.32 
TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 
        1.97        25.41        21.67        20.78        14.93         4.11 
TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH 
      147.39       137.16        66.81       117.40        96.95        78.71 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-JW-A5VI TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y 
       81.96        26.56        16.64         0.89         0.07        13.87 
TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 
        0.03        29.72         4.34         3.72         3.45         5.85 
TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PF 
        3.39         3.72         5.75         6.25         3.88        93.99 

  9P GAIN MUTATED 9P GAIN WILD-TYPE 
             0.07              0.03 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
           134.33            177.04 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
           11.670            12.625 
[1] "0.1 - 134.3 (11.7)" "0.0 - 177.0 (12.6)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D17V2, continuous
                   vv
clus                T1 T2+T3+T4
  9P GAIN MUTATED    8        5
  9P GAIN WILD-TYPE 73       27
D17V3, multiclass
          clus
vv         9P GAIN MUTATED 9P GAIN WILD-TYPE
  T1                     8                73
  T2+T3+T4               5                27
D17V4, binary
                   cls
clus                 0  1
  9P GAIN MUTATED    7  6
  9P GAIN WILD-TYPE 66 30
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      7    6
  9P GAIN WILD-TYPE   66   30
   clus
vv  9P GAIN MUTATED 9P GAIN WILD-TYPE
  0               7                66
  1               6                30
                   vv
clus                M0 M1 MX
  9P GAIN MUTATED    7  0  6
  9P GAIN WILD-TYPE 54  3 47
D17V5, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  M0               7                54
  M1               0                 3
  MX               6                47
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  9P GAIN MUTATED               0                               16
  9P GAIN WILD-TYPE             2                              108
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  9P GAIN MUTATED                                               0
  9P GAIN WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  9P GAIN MUTATED                                     2
  9P GAIN WILD-TYPE                                  14
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  9P GAIN MUTATED                                           0
  9P GAIN WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  9P GAIN MUTATED                                              0
  9P GAIN WILD-TYPE                                            3
D17V6, multiclass
D17V7, binary
                   cls
clus                  0   1
  9P GAIN MUTATED     1  17
  9P GAIN WILD-TYPE  24 108
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      1   17
  9P GAIN WILD-TYPE   24  108
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  NO                1                24
  YES              17               108
D17V8, continuous
D17V9, continuous

Clustering(18) Variable = 9Q GAIN MUTATION ANALYSIS
D18V1, survival
                   sevent
clus2                 0   1
  9Q GAIN MUTATED    14   3
  9Q GAIN WILD-TYPE 101  25
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               17               126 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
                3                25 
$`9Q GAIN MUTATED`
TCGA-C5-A1MP TCGA-C5-A2LV TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7UE TCGA-DS-A3LQ 
        3.58        73.45       134.33        15.48        85.55        22.98 
TCGA-EA-A5ZE TCGA-EK-A2RN TCGA-EX-A3L1 TCGA-FU-A3TX TCGA-FU-A3YQ TCGA-FU-A40J 
       14.99         0.10         6.94         1.48         3.52         1.35 
TCGA-IR-A3LL TCGA-LP-A4AU TCGA-MY-A5BE TCGA-Q1-A6DT TCGA-UC-A7PD 
       36.36         0.10         0.07         3.39        11.67 

$`9Q GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ 
      144.16       177.04       173.29        82.85         5.46        19.86 
TCGA-C5-A1M5 TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF 
       67.46        31.40        46.32        30.21        35.01        53.16 
TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LS 
       38.99        35.61         2.73         2.43        40.93        44.22 
TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE 
       16.14        78.35        38.43         0.82        52.01        18.02 
TCGA-C5-A3HF TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UH 
       17.85        25.35       101.82         9.67        17.19        60.69 
TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM 
        9.34        87.75        58.88        36.76         2.66       117.99 
TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS 
      118.65        16.83        16.18         7.33         8.28         0.76 
TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE 
        0.26         1.74         1.32         0.82         0.62         1.18 
TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E 
       14.50        14.50         1.81        12.66        12.82         0.26 
TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R 
        1.48        13.91         0.69        14.96         0.62         0.39 
TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB 
       12.59        45.96         6.64         0.53         0.59         0.07 
TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RM 
        4.04         0.03         0.36         1.18        23.70         2.24 
TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 
        0.07         0.10         0.10         0.03        20.35         7.92 
TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG 
       14.70         4.47         6.12         1.22        23.84         0.92 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3WB 
        2.17         0.66         1.02         1.45         1.58         0.82 
TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 
        1.32         1.97        25.41        21.67        20.78        14.93 
TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF 
        4.11       147.39       137.16        66.81       117.40        96.95 
TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-JW-A5VI TCGA-LP-A4AW TCGA-LP-A4AX 
       78.71        81.96        26.56        16.64         0.89         0.07 
TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 
       13.87         0.03        29.72         4.34         3.72         3.45 
TCGA-Q1-A5R3 TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PF 
        5.85         3.72         5.75         6.25         3.88        93.99 

  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
             0.07              0.03 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
           134.33            177.04 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
             6.94             12.74 
[1] "0.1 - 134.3 (6.9)"  "0.0 - 177.0 (12.7)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D18V2, continuous
                   vv
clus                T1 T2+T3+T4
  9Q GAIN MUTATED    9        5
  9Q GAIN WILD-TYPE 72       27
D18V3, multiclass
          clus
vv         9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  T1                     9                72
  T2+T3+T4               5                27
D18V4, binary
                   cls
clus                 0  1
  9Q GAIN MUTATED    8  6
  9Q GAIN WILD-TYPE 65 30
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      8    6
  9Q GAIN WILD-TYPE   65   30
   clus
vv  9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  0               8                65
  1               6                30
                   vv
clus                M0 M1 MX
  9Q GAIN MUTATED    8  0  7
  9Q GAIN WILD-TYPE 53  3 46
D18V5, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  M0               8                53
  M1               0                 3
  MX               7                46
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  9Q GAIN MUTATED               0                               19
  9Q GAIN WILD-TYPE             2                              105
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  9Q GAIN MUTATED                                               0
  9Q GAIN WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  9Q GAIN MUTATED                                     1
  9Q GAIN WILD-TYPE                                  15
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  9Q GAIN MUTATED                                           0
  9Q GAIN WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  9Q GAIN MUTATED                                              0
  9Q GAIN WILD-TYPE                                            3
D18V6, multiclass
D18V7, binary
                   cls
clus                  0   1
  9Q GAIN MUTATED     1  19
  9Q GAIN WILD-TYPE  24 106
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      1   19
  9Q GAIN WILD-TYPE   24  106
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  NO                1                24
  YES              19               106
D18V8, continuous
D18V9, continuous

Clustering(19) Variable = 10P GAIN MUTATION ANALYSIS
D19V1, survival
                    sevent
clus2                  0   1
  10P GAIN MUTATED     9   2
  10P GAIN WILD-TYPE 106  26
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                11                132 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 2                 26 
$`10P GAIN MUTATED`
TCGA-BI-A0VS TCGA-C5-A1BL TCGA-C5-A1M9 TCGA-C5-A7CH TCGA-DS-A0VK TCGA-EK-A2PG 
       57.04       173.29        35.01        25.35        36.76         0.53 
TCGA-EK-A2RJ TCGA-FU-A3NI TCGA-HM-A4S6 TCGA-IR-A3LL TCGA-LP-A4AW 
        1.18         1.45        14.93        36.36         0.89 

$`10P GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BJ 
       49.48        11.44        68.84        18.74        36.56       144.16 
TCGA-C5-A1BK TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 TCGA-C5-A1M6 
      177.04        82.85         5.46        19.86        67.46        31.40 
TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A1MJ 
       46.32        30.21        53.16        38.99        35.61         2.73 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LX 
        2.43        40.93         3.58        44.22        73.45        16.14 
TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF 
       78.35        38.43         0.82        52.01        18.02        17.85 
TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE 
      101.82       134.33        15.48         9.67        17.19        85.55 
TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VL TCGA-DS-A0VM 
       60.69         9.34        87.75        58.88         2.66       117.99 
TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI 
      118.65        22.98        16.83        16.18         7.33         8.28 
TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
        0.76         0.26         1.74         1.32         0.82         0.62 
TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA 
        1.18        14.50        14.50         1.81        12.66        12.82 
TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF 
        0.26         1.48        13.91         0.69        14.99        14.96 
TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2R7 
        0.62         0.39        12.59        45.96         6.64         0.59 
TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RL TCGA-EK-A2RM 
        0.07         4.04         0.03         0.36        23.70         2.24 
TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 
        0.10         0.07         0.10         0.10         0.03        20.35 
TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K 
        7.92         6.94        14.70         4.47         6.12         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ 
       23.84         0.92         2.17         0.66         1.02         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV 
        1.48         0.82         3.52         1.35         1.32         1.97 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA 
       25.41        21.67        20.78         4.11       147.39       137.16 
TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK 
       66.81       117.40        96.95        78.71        81.96        26.56 
TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD 
       16.64         0.10         0.07        13.87         0.03        29.72 
TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DT 
        0.07         4.34         3.72         3.45         5.85         3.39 
TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        3.72         5.75         6.25         3.88        11.67        93.99 

  10P GAIN MUTATED 10P GAIN WILD-TYPE 
              0.53               0.03 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
            173.29             177.04 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
            25.350             11.555 
[1] "0.5 - 173.3 (25.4)" "0.0 - 177.0 (11.6)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D19V2, continuous
                    vv
clus                 T1 T2+T3+T4
  10P GAIN MUTATED    8        1
  10P GAIN WILD-TYPE 73       31
D19V3, multiclass
          clus
vv         10P GAIN MUTATED 10P GAIN WILD-TYPE
  T1                      8                 73
  T2+T3+T4                1                 31
D19V4, binary
                    cls
clus                  0  1
  10P GAIN MUTATED    4  5
  10P GAIN WILD-TYPE 69 31
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      4    5
  10P GAIN WILD-TYPE   69   31
   clus
vv  10P GAIN MUTATED 10P GAIN WILD-TYPE
  0                4                 69
  1                5                 31
                    vv
clus                 M0 M1 MX
  10P GAIN MUTATED    6  0  3
  10P GAIN WILD-TYPE 55  3 50
D19V5, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  M0                6                 55
  M1                0                  3
  MX                3                 50
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  10P GAIN MUTATED               0                               10
  10P GAIN WILD-TYPE             2                              114
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  10P GAIN MUTATED                                               0
  10P GAIN WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  10P GAIN MUTATED                                     1
  10P GAIN WILD-TYPE                                  15
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  10P GAIN MUTATED                                           0
  10P GAIN WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  10P GAIN MUTATED                                              0
  10P GAIN WILD-TYPE                                            3
D19V6, multiclass
D19V7, binary
                    cls
clus                   0   1
  10P GAIN MUTATED     2   9
  10P GAIN WILD-TYPE  23 116
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      2    9
  10P GAIN WILD-TYPE   23  116
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  NO                 2                 23
  YES                9                116
D19V8, continuous
[1] "Remove cluster labels:" "10P GAIN MUTATED"      
clus
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                 2                 41 
        TCGA-BI-A0VR         TCGA-C5-A1BF         TCGA-C5-A1BI 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A1M7         TCGA-C5-A1MF         TCGA-C5-A1MH 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A1MI         TCGA-C5-A1MN         TCGA-C5-A2LS 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A2LV         TCGA-C5-A2LX         TCGA-C5-A2M2 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HF         TCGA-C5-A7CJ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-C5-A7CK         TCGA-C5-A7CL         TCGA-C5-A7UE 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-DR-A0ZM         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-FU-A2QG         TCGA-FU-A3EO 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FU-A3HY         TCGA-FU-A3TQ         TCGA-FU-A3WB 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-FU-A3YQ         TCGA-FU-A5XV         TCGA-HM-A6W2 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-IR-A3L7         TCGA-IR-A3LB         TCGA-IR-A3LH 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-JW-A5VI         TCGA-MU-A5YI         TCGA-Q1-A6DW 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-RA-A741         TCGA-UC-A7PD 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
D19V9, continuous

Clustering(20) Variable = 10Q GAIN MUTATION ANALYSIS
D20V1, survival
                    sevent
clus2                  0   1
  10Q GAIN MUTATED     5   1
  10Q GAIN WILD-TYPE 110  27
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 6                137 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 1                 27 
$`10Q GAIN MUTATED`
TCGA-BI-A0VS TCGA-C5-A1M9 TCGA-C5-A7CH TCGA-EK-A2PG TCGA-IR-A3LL TCGA-LP-A4AU 
       57.04        35.01        25.35         0.53        36.36         0.10 

$`10Q GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BJ 
       49.48        11.44        68.84        18.74        36.56       144.16 
TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 
      177.04       173.29        82.85         5.46        19.86        67.46 
TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MI 
       31.40        46.32        30.21        53.16        38.99        35.61 
TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV 
        2.73         2.43        40.93         3.58        44.22        73.45 
TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE 
       16.14        78.35        38.43         0.82        52.01        18.02 
TCGA-C5-A3HF TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC 
       17.85       101.82       134.33        15.48         9.67        17.19 
TCGA-C5-A7UE TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
       85.55        60.69         9.34        87.75        58.88        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF 
        2.66       117.99       118.65        22.98        16.83        16.18 
TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR 
        7.33         8.28         0.76         0.26         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B 
        0.82         0.62         1.18        14.50        14.50         1.81 
TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD 
       12.66        12.82         0.26         1.48        13.91         0.69 
TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 
       14.99        14.96         0.62         0.39        12.59        45.96 
TCGA-EK-A2IP TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE 
        6.64         0.59         0.07         4.04         0.03         0.36 
TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ 
        1.18        23.70         2.24         0.10         0.07         0.10 
TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 
        0.10         0.03        20.35         7.92         6.94        14.70 
TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO 
        4.47         6.12         1.22        23.84         0.92         2.17 
TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB 
        0.66         1.02         1.45         1.58         1.48         0.82 
TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ 
        3.52         1.35         1.32         1.97        25.41        21.67 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB 
       20.78        14.93         4.11       147.39       137.16        66.81 
TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-JW-A5VI 
      117.40        96.95        78.71        81.96        26.56        16.64 
TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE 
        0.89         0.07        13.87         0.03        29.72         0.07 
TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DV 
        4.34         3.72         3.45         5.85         3.39         3.72 
TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        5.75         6.25         3.88        11.67        93.99 

  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              0.10               0.03 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
             57.04             177.04 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
             30.18              11.67 
[1] "0.1 - 57.0 (30.2)"  "0.0 - 177.0 (11.7)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D20V2, continuous
                    vv
clus                 T1 T2+T3+T4
  10Q GAIN MUTATED    2        2
  10Q GAIN WILD-TYPE 79       30
D20V3, multiclass
          clus
vv         10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  T1                      2                 79
  T2+T3+T4                2                 30
D20V4, binary
                    cls
clus                  0  1
  10Q GAIN MUTATED    2  2
  10Q GAIN WILD-TYPE 71 34
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      2    2
  10Q GAIN WILD-TYPE   71   34
   clus
vv  10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  0                2                 71
  1                2                 34
                    vv
clus                 M0 M1 MX
  10Q GAIN MUTATED    4  0  0
  10Q GAIN WILD-TYPE 57  3 53
D20V5, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  M0                4                 57
  M1                0                  3
  MX                0                 53
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  10Q GAIN MUTATED               0                                5
  10Q GAIN WILD-TYPE             2                              119
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  10Q GAIN MUTATED                                               0
  10Q GAIN WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  10Q GAIN MUTATED                                     1
  10Q GAIN WILD-TYPE                                  15
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  10Q GAIN MUTATED                                           0
  10Q GAIN WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  10Q GAIN MUTATED                                              0
  10Q GAIN WILD-TYPE                                            3
D20V6, multiclass
D20V7, binary
                    cls
clus                   0   1
  10Q GAIN MUTATED     1   5
  10Q GAIN WILD-TYPE  24 120
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      1    5
  10Q GAIN WILD-TYPE   24  120
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  NO                 1                 24
  YES                5                120
D20V8, continuous
D20V9, continuous

Clustering(21) Variable = 11P GAIN MUTATION ANALYSIS
D21V1, survival
                    sevent
clus2                  0   1
  11P GAIN MUTATED     2   1
  11P GAIN WILD-TYPE 113  27
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 3                140 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                 1                 27 
$`11P GAIN MUTATED`
TCGA-C5-A1M9 TCGA-EX-A3L1 TCGA-FU-A40J 
       35.01         6.94         1.35 

$`11P GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ 
      144.16       177.04       173.29        82.85         5.46        19.86 
TCGA-C5-A1M5 TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1MF TCGA-C5-A1MH 
       67.46        31.40        46.32        30.21        53.16        38.99 
TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS 
       35.61         2.73         2.43        40.93         3.58        44.22 
TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD 
       73.45        16.14        78.35        38.43         0.82        52.01 
TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL 
       18.02        17.85        25.35       101.82       134.33        15.48 
TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZL 
        9.67        17.19        85.55        60.69         9.34        87.75 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
       58.88        36.76         2.66       117.99       118.65        22.98 
TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A1QT 
       16.83        16.18         7.33         8.28         0.76         0.26 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 
        1.74         1.32         0.82         0.62         1.18        14.50 
TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO 
       14.50         1.81        12.66        12.82         0.26         1.48 
TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R 
       13.91         0.69        14.99        14.96         0.62         0.39 
TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB 
       12.59        45.96         6.64         0.53         0.59         0.07 
TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RM 
        4.04         0.03         0.36         1.18        23.70         2.24 
TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 
        0.10         0.07         0.10         0.10         0.03        20.35 
TCGA-EX-A1H6 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L 
        7.92        14.70         4.47         6.12         1.22        23.84 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ 
        0.92         2.17         0.66         1.02         1.45         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA 
        1.48         0.82         3.52         1.32         1.97        25.41 
TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA 
       21.67        20.78        14.93         4.11       147.39       137.16 
TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK 
       66.81       117.40        96.95        78.71        81.96        26.56 
TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y 
       36.36        16.64         0.10         0.89         0.07        13.87 
TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 
        0.03        29.72         0.07         4.34         3.72         3.45 
TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 
        5.85         3.39         3.72         5.75         6.25         3.88 
TCGA-UC-A7PD TCGA-UC-A7PF 
       11.67        93.99 

  11P GAIN MUTATED 11P GAIN WILD-TYPE 
              1.35               0.03 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
             35.01             177.04 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
             6.940             12.625 
[1] "1.4 - 35.0 (6.9)"   "0.0 - 177.0 (12.6)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
[1] "hr=" "3"  
D21V2, continuous
                    vv
clus                 T1 T2+T3+T4
  11P GAIN MUTATED    0        3
  11P GAIN WILD-TYPE 81       29
D21V3, multiclass
          clus
vv         11P GAIN MUTATED 11P GAIN WILD-TYPE
  T1                      0                 81
  T2+T3+T4                3                 29
D21V4, binary
                    cls
clus                  0  1
  11P GAIN MUTATED    1  2
  11P GAIN WILD-TYPE 72 34
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      1    2
  11P GAIN WILD-TYPE   72   34
   clus
vv  11P GAIN MUTATED 11P GAIN WILD-TYPE
  0                1                 72
  1                2                 34
                    vv
clus                 M0 M1 MX
  11P GAIN MUTATED    2  0  1
  11P GAIN WILD-TYPE 59  3 52
D21V5, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  M0                2                 59
  M1                0                  3
  MX                1                 52
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  11P GAIN MUTATED               0                                2
  11P GAIN WILD-TYPE             2                              122
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  11P GAIN MUTATED                                               0
  11P GAIN WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  11P GAIN MUTATED                                     2
  11P GAIN WILD-TYPE                                  14
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  11P GAIN MUTATED                                           0
  11P GAIN WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  11P GAIN MUTATED                                              0
  11P GAIN WILD-TYPE                                            3
D21V6, multiclass
D21V7, binary
                    cls
clus                   0   1
  11P GAIN MUTATED     1   3
  11P GAIN WILD-TYPE  24 122
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      1    3
  11P GAIN WILD-TYPE   24  122
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  NO                 1                 24
  YES                3                122
D21V8, continuous
D21V9, continuous

Clustering(22) Variable = 11Q GAIN MUTATION ANALYSIS
D22V1, survival
                    sevent
clus2                  0   1
  11Q GAIN MUTATED     3   1
  11Q GAIN WILD-TYPE 112  27
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 4                139 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                 1                 27 
$`11Q GAIN MUTATED`
TCGA-C5-A1M9 TCGA-EK-A2RJ TCGA-EX-A3L1 TCGA-FU-A40J 
       35.01         1.18         6.94         1.35 

$`11Q GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ 
      144.16       177.04       173.29        82.85         5.46        19.86 
TCGA-C5-A1M5 TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1MF TCGA-C5-A1MH 
       67.46        31.40        46.32        30.21        53.16        38.99 
TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS 
       35.61         2.73         2.43        40.93         3.58        44.22 
TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD 
       73.45        16.14        78.35        38.43         0.82        52.01 
TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL 
       18.02        17.85        25.35       101.82       134.33        15.48 
TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZL 
        9.67        17.19        85.55        60.69         9.34        87.75 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
       58.88        36.76         2.66       117.99       118.65        22.98 
TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A1QT 
       16.83        16.18         7.33         8.28         0.76         0.26 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 
        1.74         1.32         0.82         0.62         1.18        14.50 
TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO 
       14.50         1.81        12.66        12.82         0.26         1.48 
TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R 
       13.91         0.69        14.99        14.96         0.62         0.39 
TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB 
       12.59        45.96         6.64         0.53         0.59         0.07 
TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A2RN 
        4.04         0.03         0.36        23.70         2.24         0.10 
TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 
        0.07         0.10         0.10         0.03        20.35         7.92 
TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG 
       14.70         4.47         6.12         1.22        23.84         0.92 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX 
        2.17         0.66         1.02         1.45         1.58         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ 
        0.82         3.52         1.32         1.97        25.41        21.67 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB 
       20.78        14.93         4.11       147.39       137.16        66.81 
TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL 
      117.40        96.95        78.71        81.96        26.56        36.36 
TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI 
       16.64         0.10         0.89         0.07        13.87         0.03 
TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 
       29.72         0.07         4.34         3.72         3.45         5.85 
TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD 
        3.39         3.72         5.75         6.25         3.88        11.67 
TCGA-UC-A7PF 
       93.99 

  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              1.18               0.03 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
             35.01             177.04 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
             4.145             12.660 
[1] "1.2 - 35.0 (4.1)"   "0.0 - 177.0 (12.7)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
[1] "hr=" "3"  
D22V2, continuous
                    vv
clus                 T1 T2+T3+T4
  11Q GAIN MUTATED    1        3
  11Q GAIN WILD-TYPE 80       29
D22V3, multiclass
          clus
vv         11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  T1                      1                 80
  T2+T3+T4                3                 29
D22V4, binary
                    cls
clus                  0  1
  11Q GAIN MUTATED    2  2
  11Q GAIN WILD-TYPE 71 34
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      2    2
  11Q GAIN WILD-TYPE   71   34
   clus
vv  11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  0                2                 71
  1                2                 34
                    vv
clus                 M0 M1 MX
  11Q GAIN MUTATED    2  0  2
  11Q GAIN WILD-TYPE 59  3 51
D22V5, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  M0                2                 59
  M1                0                  3
  MX                2                 51
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  11Q GAIN MUTATED               0                                2
  11Q GAIN WILD-TYPE             2                              122
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  11Q GAIN MUTATED                                               0
  11Q GAIN WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  11Q GAIN MUTATED                                     2
  11Q GAIN WILD-TYPE                                  14
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  11Q GAIN MUTATED                                           0
  11Q GAIN WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  11Q GAIN MUTATED                                              0
  11Q GAIN WILD-TYPE                                            3
D22V6, multiclass
D22V7, binary
                    cls
clus                   0   1
  11Q GAIN MUTATED     1   3
  11Q GAIN WILD-TYPE  24 122
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      1    3
  11Q GAIN WILD-TYPE   24  122
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  NO                 1                 24
  YES                3                122
D22V8, continuous
D22V9, continuous

Clustering(23) Variable = 12P GAIN MUTATION ANALYSIS
D23V1, survival
                    sevent
clus2                 0  1
  12P GAIN MUTATED   16  6
  12P GAIN WILD-TYPE 99 22
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                22                121 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                 6                 22 
$`12P GAIN MUTATED`
TCGA-C5-A1M6 TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A2LX 
       31.40        53.16        38.99        35.61         2.73        16.14 
TCGA-C5-A3HE TCGA-C5-A7CH TCGA-C5-A7CK TCGA-C5-A7X3 TCGA-DS-A3LQ TCGA-EA-A1QS 
       18.02        25.35       134.33         9.34        22.98         0.76 
TCGA-EA-A439 TCGA-EA-A5O9 TCGA-EA-A5ZF TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3NI 
       14.50        13.91        14.96        23.84         2.17         1.45 
TCGA-FU-A3TX TCGA-FU-A5XV TCGA-MY-A5BD TCGA-MY-A5BE 
        1.48         1.97        29.72         0.07 

$`12P GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ 
      144.16       177.04       173.29        82.85         5.46        19.86 
TCGA-C5-A1M5 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MK TCGA-C5-A1MN 
       67.46        46.32        30.21        35.01         2.43        40.93 
TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 
        3.58        44.22        73.45        78.35        38.43         0.82 
TCGA-C5-A3HD TCGA-C5-A3HF TCGA-C5-A7CJ TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC 
       52.01        17.85       101.82        15.48         9.67        17.19 
TCGA-C5-A7UE TCGA-C5-A7UH TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL 
       85.55        60.69        87.75        58.88        36.76         2.66 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI 
      117.99       118.65        16.83        16.18         7.33         8.28 
TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE 
        0.26         1.74         1.32         0.82         0.62         1.18 
TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO 
       14.50         1.81        12.66        12.82         0.26         1.48 
TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 
        0.69        14.99         0.62         0.39        12.59        45.96 
TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD 
        6.64         0.53         0.59         0.07         4.04         0.03 
TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A2RN TCGA-EK-A2RO 
        0.36         1.18        23.70         2.24         0.10         0.07 
TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 
        0.10         0.10         0.03        20.35         7.92         6.94 
TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3HY 
       14.70         4.47         6.12         1.22         0.92         0.66 
TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G 
        1.02         1.58         0.82         3.52         1.35         1.32 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 
       25.41        21.67        20.78        14.93         4.11       147.39 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI 
      137.16        66.81       117.40        96.95        78.71        81.96 
TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX 
       26.56        36.36        16.64         0.10         0.89         0.07 
TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 
       13.87         0.03         4.34         3.72         3.45         5.85 
TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD 
        3.39         3.72         5.75         6.25         3.88        11.67 
TCGA-UC-A7PF 
       93.99 

  12P GAIN MUTATED 12P GAIN WILD-TYPE 
              0.07               0.03 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
            134.33             177.04 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
             15.55               9.67 
[1] "0.1 - 134.3 (15.6)" "0.0 - 177.0 (9.7)" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
[1] "hr=" "1.7"
D23V2, continuous
                    vv
clus                 T1 T2+T3+T4
  12P GAIN MUTATED   11        6
  12P GAIN WILD-TYPE 70       26
D23V3, multiclass
          clus
vv         12P GAIN MUTATED 12P GAIN WILD-TYPE
  T1                     11                 70
  T2+T3+T4                6                 26
D23V4, binary
                    cls
clus                  0  1
  12P GAIN MUTATED   11  5
  12P GAIN WILD-TYPE 62 31
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     11    5
  12P GAIN WILD-TYPE   62   31
   clus
vv  12P GAIN MUTATED 12P GAIN WILD-TYPE
  0               11                 62
  1                5                 31
                    vv
clus                 M0 M1 MX
  12P GAIN MUTATED    9  0  8
  12P GAIN WILD-TYPE 52  3 45
D23V5, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  M0                9                 52
  M1                0                  3
  MX                8                 45
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  12P GAIN MUTATED               0                               20
  12P GAIN WILD-TYPE             2                              104
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  12P GAIN MUTATED                                               0
  12P GAIN WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  12P GAIN MUTATED                                     2
  12P GAIN WILD-TYPE                                  14
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  12P GAIN MUTATED                                           0
  12P GAIN WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  12P GAIN MUTATED                                              0
  12P GAIN WILD-TYPE                                            3
D23V6, multiclass
D23V7, binary
                    cls
clus                   0   1
  12P GAIN MUTATED     6  16
  12P GAIN WILD-TYPE  19 109
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED      6   16
  12P GAIN WILD-TYPE   19  109
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  NO                 6                 19
  YES               16                109
D23V8, continuous
D23V9, continuous

Clustering(24) Variable = 12Q GAIN MUTATION ANALYSIS
D24V1, survival
                    sevent
clus2                 0  1
  12Q GAIN MUTATED   16  6
  12Q GAIN WILD-TYPE 99 22
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                22                121 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                 6                 22 
$`12Q GAIN MUTATED`
TCGA-BI-A0VS TCGA-C5-A1M6 TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A1MJ 
       57.04        31.40        53.16        38.99        35.61         2.73 
TCGA-C5-A2LX TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A7CK TCGA-C5-A7X3 TCGA-DS-A3LQ 
       16.14        52.01        18.02       134.33         9.34        22.98 
TCGA-EA-A1QS TCGA-EA-A439 TCGA-EA-A5ZF TCGA-FU-A23L TCGA-FU-A3NI TCGA-FU-A3TX 
        0.76        14.50        14.96        23.84         1.45         1.48 
TCGA-FU-A5XV TCGA-MY-A5BD TCGA-MY-A5BE TCGA-Q1-A5R3 
        1.97        29.72         0.07         5.85 

$`12Q GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BJ 
       49.48        11.44        68.84        18.74        36.56       144.16 
TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 
      177.04       173.29        82.85         5.46        19.86        67.46 
TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP 
       46.32        30.21        35.01         2.43        40.93         3.58 
TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HF 
       44.22        73.45        78.35        38.43         0.82        17.85 
TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE 
       25.35       101.82        15.48         9.67        17.19        85.55 
TCGA-C5-A7UH TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM 
       60.69        87.75        58.88        36.76         2.66       117.99 
TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QT 
      118.65        16.83        16.18         7.33         8.28         0.26 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 
        1.74         1.32         0.82         0.62         1.18        14.50 
TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 
        1.81        12.66        12.82         0.26         1.48        13.91 
TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 
        0.69        14.99         0.62         0.39        12.59        45.96 
TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD 
        6.64         0.53         0.59         0.07         4.04         0.03 
TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A2RN TCGA-EK-A2RO 
        0.36         1.18        23.70         2.24         0.10         0.07 
TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 
        0.10         0.10         0.03        20.35         7.92         6.94 
TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO 
       14.70         4.47         6.12         1.22         0.92         2.17 
TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J 
        0.66         1.02         1.58         0.82         3.52         1.35 
TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 
        1.32        25.41        21.67        20.78        14.93         4.11 
TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH 
      147.39       137.16        66.81       117.40        96.95        78.71 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW 
       81.96        26.56        36.36        16.64         0.10         0.89 
TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 
        0.07        13.87         0.03         4.34         3.72         3.45 
TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD 
        3.39         3.72         5.75         6.25         3.88        11.67 
TCGA-UC-A7PF 
       93.99 

  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              0.07               0.03 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
            134.33             177.04 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
             17.08               9.67 
[1] "0.1 - 134.3 (17.1)" "0.0 - 177.0 (9.7)" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D24V2, continuous
                    vv
clus                 T1 T2+T3+T4
  12Q GAIN MUTATED   11        5
  12Q GAIN WILD-TYPE 70       27
D24V3, multiclass
          clus
vv         12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  T1                     11                 70
  T2+T3+T4                5                 27
D24V4, binary
                    cls
clus                  0  1
  12Q GAIN MUTATED   10  5
  12Q GAIN WILD-TYPE 63 31
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED     10    5
  12Q GAIN WILD-TYPE   63   31
   clus
vv  12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  0               10                 63
  1                5                 31
                    vv
clus                 M0 M1 MX
  12Q GAIN MUTATED    9  0  8
  12Q GAIN WILD-TYPE 52  3 45
D24V5, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  M0                9                 52
  M1                0                  3
  MX                8                 45
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  12Q GAIN MUTATED               0                               21
  12Q GAIN WILD-TYPE             2                              103
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  12Q GAIN MUTATED                                               0
  12Q GAIN WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  12Q GAIN MUTATED                                     1
  12Q GAIN WILD-TYPE                                  15
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  12Q GAIN MUTATED                                           0
  12Q GAIN WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  12Q GAIN MUTATED                                              0
  12Q GAIN WILD-TYPE                                            3
D24V6, multiclass
D24V7, binary
                    cls
clus                   0   1
  12Q GAIN MUTATED     6  16
  12Q GAIN WILD-TYPE  19 109
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      6   16
  12Q GAIN WILD-TYPE   19  109
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  NO                 6                 19
  YES               16                109
D24V8, continuous
D24V9, continuous

Clustering(25) Variable = 13Q GAIN MUTATION ANALYSIS
D25V1, survival
                    sevent
clus2                  0   1
  13Q GAIN MUTATED    10   3
  13Q GAIN WILD-TYPE 105  25
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                13                130 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 3                 25 
$`13Q GAIN MUTATED`
TCGA-C5-A1M9 TCGA-C5-A1MJ TCGA-C5-A3HF TCGA-EA-A3HT TCGA-EA-A5O9 TCGA-EA-A5ZF 
       35.01         2.73        17.85         0.62        13.91        14.96 
TCGA-EK-A2H0 TCGA-EK-A2PG TCGA-EK-A2RJ TCGA-FU-A40J TCGA-IR-A3L7 TCGA-MY-A5BE 
       45.96         0.53         1.18         1.35       147.39         0.07 
TCGA-Q1-A73R 
        6.25 

$`13Q GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ 
      144.16       177.04       173.29        82.85         5.46        19.86 
TCGA-C5-A1M5 TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1MF TCGA-C5-A1MH 
       67.46        31.40        46.32        30.21        53.16        38.99 
TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV 
       35.61         2.43        40.93         3.58        44.22        73.45 
TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE 
       16.14        78.35        38.43         0.82        52.01        18.02 
TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC 
       25.35       101.82       134.33        15.48         9.67        17.19 
TCGA-C5-A7UE TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
       85.55        60.69         9.34        87.75        58.88        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF 
        2.66       117.99       118.65        22.98        16.83        16.18 
TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR 
        7.33         8.28         0.76         0.26         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S 
        0.82         1.18        14.50        14.50         1.81        12.66 
TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A6QX 
       12.82         0.26         1.48         0.69        14.99         0.62 
TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2IP TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC 
        0.39        12.59         6.64         0.59         0.07         4.04 
TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A2RN TCGA-EK-A2RO 
        0.03         0.36        23.70         2.24         0.10         0.07 
TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 
        0.10         0.10         0.03        20.35         7.92         6.94 
TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG 
       14.70         4.47         6.12         1.22        23.84         0.92 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX 
        2.17         0.66         1.02         1.45         1.58         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ 
        0.82         3.52         1.32         1.97        25.41        21.67 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC 
       20.78        14.93         4.11       137.16        66.81       117.40 
TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI 
       96.95        78.71        81.96        26.56        36.36        16.64 
TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD 
        0.10         0.89         0.07        13.87         0.03        29.72 
TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DV 
        4.34         3.72         3.45         5.85         3.39         3.72 
TCGA-Q1-A6DW TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        5.75         3.88        11.67        93.99 

  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
              0.07               0.03 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
            147.39             177.04 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             6.250             12.625 
[1] "0.1 - 147.4 (6.2)"  "0.0 - 177.0 (12.6)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D25V2, continuous
                    vv
clus                 T1 T2+T3+T4
  13Q GAIN MUTATED    7        2
  13Q GAIN WILD-TYPE 74       30
D25V3, multiclass
          clus
vv         13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  T1                      7                 74
  T2+T3+T4                2                 30
D25V4, binary
                    cls
clus                  0  1
  13Q GAIN MUTATED    6  2
  13Q GAIN WILD-TYPE 67 34
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      6    2
  13Q GAIN WILD-TYPE   67   34
   clus
vv  13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  0                6                 67
  1                2                 34
                    vv
clus                 M0 M1 MX
  13Q GAIN MUTATED    5  0  5
  13Q GAIN WILD-TYPE 56  3 48
D25V5, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  M0                5                 56
  M1                0                  3
  MX                5                 48
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  13Q GAIN MUTATED               0                                8
  13Q GAIN WILD-TYPE             2                              116
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  13Q GAIN MUTATED                                               1
  13Q GAIN WILD-TYPE                                             3
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  13Q GAIN MUTATED                                     3
  13Q GAIN WILD-TYPE                                  13
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  13Q GAIN MUTATED                                           0
  13Q GAIN WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  13Q GAIN MUTATED                                              1
  13Q GAIN WILD-TYPE                                            2
D25V6, multiclass
D25V7, binary
                    cls
clus                   0   1
  13Q GAIN MUTATED     2  11
  13Q GAIN WILD-TYPE  23 114
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      2   11
  13Q GAIN WILD-TYPE   23  114
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  NO                 2                 23
  YES               11                114
D25V8, continuous
[1] "Remove cluster labels:" "13Q GAIN MUTATED"      
clus
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 2                 41 
        TCGA-BI-A0VR         TCGA-C5-A1BF         TCGA-C5-A1BI 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BL         TCGA-C5-A1BN 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A1BQ         TCGA-C5-A1M7         TCGA-C5-A1MF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MN 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A2M2         TCGA-C5-A3HD         TCGA-C5-A7CJ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-C5-A7CK         TCGA-C5-A7CL         TCGA-C5-A7UE 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZM         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-FU-A2QG         TCGA-FU-A3EO 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FU-A3HY         TCGA-FU-A3TQ         TCGA-FU-A3WB 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-FU-A3YQ         TCGA-FU-A5XV         TCGA-HM-A4S6 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3LB         TCGA-IR-A3LH 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-JW-A5VI         TCGA-MU-A5YI         TCGA-Q1-A6DW 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-RA-A741         TCGA-UC-A7PD 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
D25V9, continuous

Clustering(26) Variable = 14Q GAIN MUTATION ANALYSIS
D26V1, survival
                    sevent
clus2                 0  1
  14Q GAIN MUTATED   16  4
  14Q GAIN WILD-TYPE 99 24
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                20                123 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                 4                 24 
$`14Q GAIN MUTATED`
TCGA-BI-A0VS TCGA-C5-A1BL TCGA-C5-A1M6 TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A2LV 
       57.04       173.29        31.40        38.99        35.61        73.45 
TCGA-C5-A7CH TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A3QE TCGA-EA-A439 TCGA-EA-A5O9 
       25.35         8.28         0.76         1.18        14.50        13.91 
TCGA-EA-A5ZF TCGA-EK-A2IP TCGA-EK-A2R7 TCGA-EX-A3L1 TCGA-FU-A3HY TCGA-FU-A3NI 
       14.96         6.64         0.59         6.94         0.66         1.45 
TCGA-MY-A5BD TCGA-Q1-A6DT 
       29.72         3.39 

$`14Q GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BJ 
       49.48        11.44        68.84        18.74        36.56       144.16 
TCGA-C5-A1BK TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 TCGA-C5-A1M7 
      177.04        82.85         5.46        19.86        67.46        46.32 
TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN 
       30.21        35.01        53.16         2.73         2.43        40.93 
TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 
        3.58        44.22        16.14        78.35        38.43         0.82 
TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL 
       52.01        18.02        17.85       101.82       134.33        15.48 
TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZL 
        9.67        17.19        85.55        60.69         9.34        87.75 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
       58.88        36.76         2.66       117.99       118.65        22.98 
TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR 
       16.83        16.18         7.33         0.26         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA 
        0.82         0.62        14.50         1.81        12.66        12.82 
TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A6QX TCGA-EA-A78R 
        0.26         1.48         0.69        14.99         0.62         0.39 
TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2PG TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD 
       12.59        45.96         0.53         0.07         4.04         0.03 
TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A2RN TCGA-EK-A2RO 
        0.36         1.18        23.70         2.24         0.10         0.07 
TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A449 
        0.10         0.10         0.03        20.35         7.92        14.70 
TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO 
        4.47         6.12         1.22        23.84         0.92         2.17 
TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J 
        1.02         1.58         1.48         0.82         3.52         1.35 
TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 
        1.32         1.97        25.41        21.67        20.78        14.93 
TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF 
        4.11       147.39       137.16        66.81       117.40        96.95 
TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU 
       78.71        81.96        26.56        36.36        16.64         0.10 
TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BE TCGA-MY-A5BF 
        0.89         0.07        13.87         0.03         0.07         4.34 
TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R 
        3.72         3.45         5.85         3.72         5.75         6.25 
TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        3.88        11.67        93.99 

  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
              0.59               0.03 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
            173.29             177.04 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
            14.205             11.670 
[1] "0.6 - 173.3 (14.2)" "0.0 - 177.0 (11.7)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D26V2, continuous
                    vv
clus                 T1 T2+T3+T4
  14Q GAIN MUTATED   12        4
  14Q GAIN WILD-TYPE 69       28
D26V3, multiclass
          clus
vv         14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  T1                     12                 69
  T2+T3+T4                4                 28
D26V4, binary
                    cls
clus                  0  1
  14Q GAIN MUTATED    8  7
  14Q GAIN WILD-TYPE 65 29
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      8    7
  14Q GAIN WILD-TYPE   65   29
   clus
vv  14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  0                8                 65
  1                7                 29
                    vv
clus                 M0 M1 MX
  14Q GAIN MUTATED   11  0  6
  14Q GAIN WILD-TYPE 50  3 47
D26V5, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  M0               11                 50
  M1                0                  3
  MX                6                 47
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  14Q GAIN MUTATED               0                               21
  14Q GAIN WILD-TYPE             2                              103
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  14Q GAIN MUTATED                                               0
  14Q GAIN WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  14Q GAIN MUTATED                                     0
  14Q GAIN WILD-TYPE                                  16
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  14Q GAIN MUTATED                                           0
  14Q GAIN WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  14Q GAIN MUTATED                                              0
  14Q GAIN WILD-TYPE                                            3
D26V6, multiclass
D26V7, binary
                    cls
clus                   0   1
  14Q GAIN MUTATED     4  17
  14Q GAIN WILD-TYPE  21 108
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      4   17
  14Q GAIN WILD-TYPE   21  108
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  NO                 4                 21
  YES               17                108
D26V8, continuous
D26V9, continuous

Clustering(27) Variable = 15Q GAIN MUTATION ANALYSIS
D27V1, survival
                    sevent
clus2                  0   1
  15Q GAIN MUTATED    15   7
  15Q GAIN WILD-TYPE 100  21
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                22                121 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                 7                 21 
$`15Q GAIN MUTATED`
TCGA-BI-A0VR TCGA-C5-A1BF TCGA-C5-A1M6 TCGA-C5-A1M8 TCGA-C5-A1MI TCGA-C5-A1MK 
       49.48        18.74        31.40        30.21        35.61         2.43 
TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A3HE TCGA-C5-A7CJ TCGA-C5-A7CM TCGA-C5-A7X3 
       40.93         3.58        18.02       101.82         9.67         9.34 
TCGA-EA-A3HQ TCGA-EA-A5O9 TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RM TCGA-EX-A3L1 
        1.74        13.91         4.04         0.03         2.24         6.94 
TCGA-EX-A69L TCGA-FU-A23L TCGA-LP-A4AU TCGA-MY-A5BE 
        4.47        23.84         0.10         0.07 

$`15Q GAIN WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BI TCGA-C5-A1BJ TCGA-C5-A1BK 
       57.04        11.44        68.84        36.56       144.16       177.04 
TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 TCGA-C5-A1M7 
      173.29        82.85         5.46        19.86        67.46        46.32 
TCGA-C5-A1M9 TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MJ TCGA-C5-A2LS TCGA-C5-A2LV 
       35.01        53.16        38.99         2.73        44.22        73.45 
TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HF 
       16.14        78.35        38.43         0.82        52.01        17.85 
TCGA-C5-A7CH TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7UH 
       25.35       134.33        15.48        17.19        85.55        60.69 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN 
       87.75        58.88        36.76         2.66       117.99       118.65 
TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS 
       22.98        16.83        16.18         7.33         8.28         0.76 
TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 
        0.26         1.32         0.82         0.62         1.18        14.50 
TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO 
       14.50         1.81        12.66        12.82         0.26         1.48 
TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2GZ 
        0.69        14.99        14.96         0.62         0.39        12.59 
TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RE 
       45.96         6.64         0.53         0.59         0.07         0.36 
TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK 
        1.18        23.70         0.10         0.07         0.10         0.10 
TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A449 TCGA-EX-A69M TCGA-FU-A23K 
        0.03        20.35         7.92        14.70         6.12         1.22 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ 
        0.92         2.17         0.66         1.02         1.45         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV 
        1.48         0.82         3.52         1.35         1.32         1.97 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 
       25.41        21.67        20.78        14.93         4.11       147.39 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI 
      137.16        66.81       117.40        96.95        78.71        81.96 
TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y 
       26.56        36.36        16.64         0.89         0.07        13.87 
TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 
        0.03        29.72         4.34         3.72         3.45         5.85 
TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD 
        3.39         3.72         5.75         6.25         3.88        11.67 
TCGA-UC-A7PF 
       93.99 

  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
              0.03               0.03 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
            101.82             177.04 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             9.505             12.660 
[1] "0.0 - 101.8 (9.5)"  "0.0 - 177.0 (12.7)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
[1] "hr=" "2.5"
D27V2, continuous
                    vv
clus                 T1 T2+T3+T4
  15Q GAIN MUTATED    8        6
  15Q GAIN WILD-TYPE 73       26
D27V3, multiclass
          clus
vv         15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  T1                      8                 73
  T2+T3+T4                6                 26
D27V4, binary
                    cls
clus                  0  1
  15Q GAIN MUTATED   10  5
  15Q GAIN WILD-TYPE 63 31
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED     10    5
  15Q GAIN WILD-TYPE   63   31
   clus
vv  15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  0               10                 63
  1                5                 31
                    vv
clus                 M0 M1 MX
  15Q GAIN MUTATED    8  0  7
  15Q GAIN WILD-TYPE 53  3 46
D27V5, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  M0                8                 53
  M1                0                  3
  MX                7                 46
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  15Q GAIN MUTATED               0                               21
  15Q GAIN WILD-TYPE             2                              103
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  15Q GAIN MUTATED                                               1
  15Q GAIN WILD-TYPE                                             3
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  15Q GAIN MUTATED                                     1
  15Q GAIN WILD-TYPE                                  15
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  15Q GAIN MUTATED                                           0
  15Q GAIN WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  15Q GAIN MUTATED                                              0
  15Q GAIN WILD-TYPE                                            3
D27V6, multiclass
D27V7, binary
                    cls
clus                   0   1
  15Q GAIN MUTATED     6  17
  15Q GAIN WILD-TYPE  19 108
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      6   17
  15Q GAIN WILD-TYPE   19  108
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  NO                 6                 19
  YES               17                108
D27V8, continuous
D27V9, continuous

Clustering(28) Variable = 16P GAIN MUTATION ANALYSIS
D28V1, survival
                    sevent
clus2                 0  1
  16P GAIN MUTATED   16  4
  16P GAIN WILD-TYPE 99 24
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                20                123 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                 4                 24 
$`16P GAIN MUTATED`
TCGA-BI-A0VS TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A2LS 
       57.04        31.40        46.32        38.99        35.61        44.22 
TCGA-C5-A7CH TCGA-DS-A3LQ TCGA-DS-A7WI TCGA-EA-A3HQ TCGA-EA-A439 TCGA-EA-A5O9 
       25.35        22.98         8.28         1.74        14.50        13.91 
TCGA-EA-A5ZF TCGA-EK-A2RD TCGA-EK-A2RL TCGA-EX-A69L TCGA-FU-A23L TCGA-FU-A3NI 
       14.96         0.03        23.70         4.47        23.84         1.45 
TCGA-FU-A40J TCGA-UC-A7PF 
        1.35        93.99 

$`16P GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BJ 
       49.48        11.44        68.84        18.74        36.56       144.16 
TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 
      177.04       173.29        82.85         5.46        19.86        67.46 
TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN 
       30.21        35.01        53.16         2.73         2.43        40.93 
TCGA-C5-A1MP TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 
        3.58        73.45        16.14        78.35        38.43         0.82 
TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL 
       52.01        18.02        17.85       101.82       134.33        15.48 
TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZL 
        9.67        17.19        85.55        60.69         9.34        87.75 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ 
       58.88        36.76         2.66       117.99       118.65        16.83 
TCGA-DS-A7WF TCGA-DS-A7WH TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A3HS 
       16.18         7.33         0.76         0.26         1.32         0.82 
TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA 
        0.62         1.18        14.50         1.81        12.66        12.82 
TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A6QX TCGA-EA-A78R 
        0.26         1.48         0.69        14.99         0.62         0.39 
TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB 
       12.59        45.96         6.64         0.53         0.59         0.07 
TCGA-EK-A2RC TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RM TCGA-EK-A2RN TCGA-EK-A2RO 
        4.04         0.36         1.18         2.24         0.10         0.07 
TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 
        0.10         0.10         0.03        20.35         7.92         6.94 
TCGA-EX-A449 TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY 
       14.70         6.12         1.22         0.92         2.17         0.66 
TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G 
        1.02         1.58         1.48         0.82         3.52         1.32 
TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 
        1.97        25.41        21.67        20.78        14.93         4.11 
TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH 
      147.39       137.16        66.81       117.40        96.95        78.71 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW 
       81.96        26.56        36.36        16.64         0.10         0.89 
TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
        0.07        13.87         0.03        29.72         0.07         4.34 
TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW 
        3.72         3.45         5.85         3.39         3.72         5.75 
TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD 
        6.25         3.88        11.67 

  16P GAIN MUTATED 16P GAIN WILD-TYPE 
              0.03               0.03 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             93.99             177.04 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
             23.34               9.34 
[1] "0.0 - 94.0 (23.3)" "0.0 - 177.0 (9.3)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
[1] "hr=" "1"  
D28V2, continuous
                    vv
clus                 T1 T2+T3+T4
  16P GAIN MUTATED   11        6
  16P GAIN WILD-TYPE 70       26
D28V3, multiclass
          clus
vv         16P GAIN MUTATED 16P GAIN WILD-TYPE
  T1                     11                 70
  T2+T3+T4                6                 26
D28V4, binary
                    cls
clus                  0  1
  16P GAIN MUTATED    9  7
  16P GAIN WILD-TYPE 64 29
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      9    7
  16P GAIN WILD-TYPE   64   29
   clus
vv  16P GAIN MUTATED 16P GAIN WILD-TYPE
  0                9                 64
  1                7                 29
                    vv
clus                 M0 M1 MX
  16P GAIN MUTATED   10  0  7
  16P GAIN WILD-TYPE 51  3 46
D28V5, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  M0               10                 51
  M1                0                  3
  MX                7                 46
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  16P GAIN MUTATED               0                               17
  16P GAIN WILD-TYPE             2                              107
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  16P GAIN MUTATED                                               1
  16P GAIN WILD-TYPE                                             3
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  16P GAIN MUTATED                                     2
  16P GAIN WILD-TYPE                                  14
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  16P GAIN MUTATED                                           0
  16P GAIN WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  16P GAIN MUTATED                                              0
  16P GAIN WILD-TYPE                                            3
D28V6, multiclass
D28V7, binary
                    cls
clus                   0   1
  16P GAIN MUTATED     4  16
  16P GAIN WILD-TYPE  21 109
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      4   16
  16P GAIN WILD-TYPE   21  109
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  NO                 4                 21
  YES               16                109
D28V8, continuous
D28V9, continuous

Clustering(29) Variable = 16Q GAIN MUTATION ANALYSIS
D29V1, survival
                    sevent
clus2                  0   1
  16Q GAIN MUTATED    11   6
  16Q GAIN WILD-TYPE 104  22
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                17                126 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                 6                 22 
$`16Q GAIN MUTATED`
TCGA-BI-A0VS TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A7CH 
       57.04        31.40        46.32        38.99        35.61        25.35 
TCGA-C5-A7UC TCGA-DS-A3LQ TCGA-DS-A7WI TCGA-EA-A439 TCGA-EA-A5ZF TCGA-EK-A2RM 
       17.19        22.98         8.28        14.50        14.96         2.24 
TCGA-EX-A3L1 TCGA-EX-A69L TCGA-FU-A23L TCGA-FU-A40J TCGA-UC-A7PD 
        6.94         4.47        23.84         1.35        11.67 

$`16Q GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BJ 
       49.48        11.44        68.84        18.74        36.56       144.16 
TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 
      177.04       173.29        82.85         5.46        19.86        67.46 
TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN 
       30.21        35.01        53.16         2.73         2.43        40.93 
TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 
        3.58        44.22        73.45        16.14        78.35        38.43 
TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CJ TCGA-C5-A7CK 
        0.82        52.01        18.02        17.85       101.82       134.33 
TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UE TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZL 
       15.48         9.67        85.55        60.69         9.34        87.75 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ 
       58.88        36.76         2.66       117.99       118.65        16.83 
TCGA-DS-A7WF TCGA-DS-A7WH TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR 
       16.18         7.33         0.76         0.26         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-EA-A44S 
        0.82         0.62         1.18        14.50         1.81        12.66 
TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE 
       12.82         0.26         1.48        13.91         0.69        14.99 
TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2PG 
        0.62         0.39        12.59        45.96         6.64         0.53 
TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RJ 
        0.59         0.07         4.04         0.03         0.36         1.18 
TCGA-EK-A2RL TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN 
       23.70         0.10         0.07         0.10         0.10         0.03 
TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A449 TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A2QG 
       20.35         7.92        14.70         6.12         1.22         0.92 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX 
        2.17         0.66         1.02         1.45         1.58         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ 
        0.82         3.52         1.32         1.97        25.41        21.67 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB 
       20.78        14.93         4.11       147.39       137.16        66.81 
TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL 
      117.40        96.95        78.71        81.96        26.56        36.36 
TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI 
       16.64         0.10         0.89         0.07        13.87         0.03 
TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 
       29.72         0.07         4.34         3.72         3.45         5.85 
TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PF 
        3.39         3.72         5.75         6.25         3.88        93.99 

  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
              1.35               0.03 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
             57.04             177.04 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
            17.190              9.505 
[1] "1.4 - 57.0 (17.2)" "0.0 - 177.0 (9.5)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
[1] "hr=" "2.4"
D29V2, continuous
                    vv
clus                 T1 T2+T3+T4
  16Q GAIN MUTATED    7        6
  16Q GAIN WILD-TYPE 74       26
D29V3, multiclass
          clus
vv         16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  T1                      7                 74
  T2+T3+T4                6                 26
D29V4, binary
                    cls
clus                  0  1
  16Q GAIN MUTATED    8  4
  16Q GAIN WILD-TYPE 65 32
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      8    4
  16Q GAIN WILD-TYPE   65   32
   clus
vv  16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  0                8                 65
  1                4                 32
                    vv
clus                 M0 M1 MX
  16Q GAIN MUTATED    9  0  4
  16Q GAIN WILD-TYPE 52  3 49
D29V5, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  M0                9                 52
  M1                0                  3
  MX                4                 49
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  16Q GAIN MUTATED               0                               16
  16Q GAIN WILD-TYPE             2                              108
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  16Q GAIN MUTATED                                               0
  16Q GAIN WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  16Q GAIN MUTATED                                     1
  16Q GAIN WILD-TYPE                                  15
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  16Q GAIN MUTATED                                           0
  16Q GAIN WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  16Q GAIN MUTATED                                              0
  16Q GAIN WILD-TYPE                                            3
D29V6, multiclass
D29V7, binary
                    cls
clus                   0   1
  16Q GAIN MUTATED     4  13
  16Q GAIN WILD-TYPE  21 112
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      4   13
  16Q GAIN WILD-TYPE   21  112
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  NO                 4                 21
  YES               13                112
D29V8, continuous
D29V9, continuous

Clustering(30) Variable = 17P GAIN MUTATION ANALYSIS
D30V1, survival
                    sevent
clus2                  0   1
  17P GAIN MUTATED     7   3
  17P GAIN WILD-TYPE 108  25
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                10                133 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 3                 25 
$`17P GAIN MUTATED`
TCGA-C5-A1M6 TCGA-C5-A1M9 TCGA-C5-A1MI TCGA-C5-A7CH TCGA-C5-A7UE TCGA-DS-A3LQ 
       31.40        35.01        35.61        25.35        85.55        22.98 
TCGA-EA-A3HR TCGA-FU-A40J TCGA-Q1-A5R3 TCGA-UC-A7PF 
        1.32         1.35         5.85        93.99 

$`17P GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ 
      144.16       177.04       173.29        82.85         5.46        19.86 
TCGA-C5-A1M5 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MJ 
       67.46        46.32        30.21        53.16        38.99         2.73 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LX 
        2.43        40.93         3.58        44.22        73.45        16.14 
TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF 
       78.35        38.43         0.82        52.01        18.02        17.85 
TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UH 
      101.82       134.33        15.48         9.67        17.19        60.69 
TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM 
        9.34        87.75        58.88        36.76         2.66       117.99 
TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS 
      118.65        16.83        16.18         7.33         8.28         0.76 
TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 
        0.26         1.74         0.82         0.62         1.18        14.50 
TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO 
       14.50         1.81        12.66        12.82         0.26         1.48 
TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R 
       13.91         0.69        14.99        14.96         0.62         0.39 
TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB 
       12.59        45.96         6.64         0.53         0.59         0.07 
TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RM 
        4.04         0.03         0.36         1.18        23.70         2.24 
TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 
        0.10         0.07         0.10         0.10         0.03        20.35 
TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K 
        7.92         6.94        14.70         4.47         6.12         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI 
       23.84         0.92         2.17         0.66         1.02         1.45 
TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-FU-A5XV 
        1.58         1.48         0.82         3.52         1.32         1.97 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 
       25.41        21.67        20.78        14.93         4.11       147.39 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI 
      137.16        66.81       117.40        96.95        78.71        81.96 
TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX 
       26.56        36.36        16.64         0.10         0.89         0.07 
TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 
       13.87         0.03        29.72         0.07         4.34         3.72 
TCGA-Q1-A5R2 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 
        3.45         3.39         3.72         5.75         6.25         3.88 
TCGA-UC-A7PD 
       11.67 

  17P GAIN MUTATED 17P GAIN WILD-TYPE 
              1.32               0.03 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
             93.99             177.04 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
            28.375             11.440 
[1] "1.3 - 94.0 (28.4)"  "0.0 - 177.0 (11.4)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
[1] "hr=" "1.2"
D30V2, continuous
                    vv
clus                 T1 T2+T3+T4
  17P GAIN MUTATED    2        4
  17P GAIN WILD-TYPE 79       28
D30V3, multiclass
          clus
vv         17P GAIN MUTATED 17P GAIN WILD-TYPE
  T1                      2                 79
  T2+T3+T4                4                 28
D30V4, binary
                    cls
clus                  0  1
  17P GAIN MUTATED    1  5
  17P GAIN WILD-TYPE 72 31
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      1    5
  17P GAIN WILD-TYPE   72   31
   clus
vv  17P GAIN MUTATED 17P GAIN WILD-TYPE
  0                1                 72
  1                5                 31
                    vv
clus                 M0 M1 MX
  17P GAIN MUTATED    5  0  2
  17P GAIN WILD-TYPE 56  3 51
D30V5, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  M0                5                 56
  M1                0                  3
  MX                2                 51
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  17P GAIN MUTATED               0                                9
  17P GAIN WILD-TYPE             2                              115
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  17P GAIN MUTATED                                               0
  17P GAIN WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  17P GAIN MUTATED                                     2
  17P GAIN WILD-TYPE                                  14
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  17P GAIN MUTATED                                           0
  17P GAIN WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  17P GAIN MUTATED                                              0
  17P GAIN WILD-TYPE                                            3
D30V6, multiclass
D30V7, binary
                    cls
clus                   0   1
  17P GAIN MUTATED     4   7
  17P GAIN WILD-TYPE  21 118
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      4    7
  17P GAIN WILD-TYPE   21  118
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  NO                 4                 21
  YES                7                118
D30V8, continuous
[1] "Remove cluster labels:" "17P GAIN MUTATED"      
clus
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                 2                 41 
        TCGA-BI-A0VR         TCGA-C5-A1BF         TCGA-C5-A1BI 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BL         TCGA-C5-A1BN 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A1BQ         TCGA-C5-A1M7         TCGA-C5-A1MF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MN         TCGA-C5-A2LS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A2LV         TCGA-C5-A2LX         TCGA-C5-A2M2 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HF         TCGA-C5-A7CJ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-C5-A7CK         TCGA-C5-A7CL         TCGA-DR-A0ZM 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-DS-A5RQ         TCGA-DS-A7WF         TCGA-EX-A1H5 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FU-A2QG         TCGA-FU-A3EO         TCGA-FU-A3HY 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FU-A3TQ         TCGA-FU-A3WB         TCGA-FU-A3YQ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-FU-A5XV         TCGA-HM-A4S6         TCGA-HM-A6W2 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-IR-A3L7         TCGA-IR-A3LB         TCGA-IR-A3LH 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-JW-A5VI         TCGA-MU-A5YI         TCGA-Q1-A6DW 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-RA-A741         TCGA-UC-A7PD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
D30V9, continuous

Clustering(31) Variable = 17Q GAIN MUTATION ANALYSIS
D31V1, survival
                    sevent
clus2                 0  1
  17Q GAIN MUTATED   16  3
  17Q GAIN WILD-TYPE 99 25
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                19                124 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 3                 25 
$`17Q GAIN MUTATED`
TCGA-C5-A1M6 TCGA-C5-A1M9 TCGA-C5-A1MI TCGA-C5-A1MP TCGA-C5-A7CH TCGA-C5-A7UE 
       31.40        35.01        35.61         3.58        25.35        85.55 
TCGA-DS-A3LQ TCGA-EA-A3HR TCGA-EA-A439 TCGA-EA-A5ZF TCGA-EK-A2RM TCGA-EK-A3GK 
       22.98         1.32        14.50        14.96         2.24         0.10 
TCGA-EX-A3L1 TCGA-FU-A40J TCGA-LP-A4AU TCGA-MU-A51Y TCGA-Q1-A5R2 TCGA-Q1-A5R3 
        6.94         1.35         0.10        13.87         3.45         5.85 
TCGA-UC-A7PF 
       93.99 

$`17Q GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ 
      144.16       177.04       173.29        82.85         5.46        19.86 
TCGA-C5-A1M5 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MJ 
       67.46        46.32        30.21        53.16        38.99         2.73 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2LY 
        2.43        40.93        44.22        73.45        16.14        78.35 
TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CJ 
       38.43         0.82        52.01        18.02        17.85       101.82 
TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UH TCGA-C5-A7X3 
      134.33        15.48         9.67        17.19        60.69         9.34 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN 
       87.75        58.88        36.76         2.66       117.99       118.65 
TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A1QT 
       16.83        16.18         7.33         8.28         0.76         0.26 
TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A43B 
        1.74         0.82         0.62         1.18        14.50         1.81 
TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD 
       12.66        12.82         0.26         1.48        13.91         0.69 
TCGA-EA-A5ZE TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP 
       14.99         0.62         0.39        12.59        45.96         6.64 
TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE 
        0.53         0.59         0.07         4.04         0.03         0.36 
TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GN 
        1.18        23.70         0.10         0.07         0.10         0.03 
TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K 
       20.35         7.92        14.70         4.47         6.12         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI 
       23.84         0.92         2.17         0.66         1.02         1.45 
TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-FU-A5XV 
        1.58         1.48         0.82         3.52         1.32         1.97 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 
       25.41        21.67        20.78        14.93         4.11       147.39 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI 
      137.16        66.81       117.40        96.95        78.71        81.96 
TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A5YI 
       26.56        36.36        16.64         0.89         0.07         0.03 
TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DT TCGA-Q1-A6DV 
       29.72         0.07         4.34         3.72         3.39         3.72 
TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD 
        5.75         6.25         3.88        11.67 

  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              0.10               0.03 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
             93.99             177.04 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
             13.87              12.13 
[1] "0.1 - 94.0 (13.9)"  "0.0 - 177.0 (12.1)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
[1] "hr=" "1"  
D31V2, continuous
                    vv
clus                 T1 T2+T3+T4
  17Q GAIN MUTATED    5        8
  17Q GAIN WILD-TYPE 76       24
D31V3, multiclass
          clus
vv         17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  T1                      5                 76
  T2+T3+T4                8                 24
D31V4, binary
                    cls
clus                  0  1
  17Q GAIN MUTATED    5  7
  17Q GAIN WILD-TYPE 68 29
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      5    7
  17Q GAIN WILD-TYPE   68   29
   clus
vv  17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  0                5                 68
  1                7                 29
                    vv
clus                 M0 M1 MX
  17Q GAIN MUTATED    9  0  6
  17Q GAIN WILD-TYPE 52  3 47
D31V5, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  M0                9                 52
  M1                0                  3
  MX                6                 47
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  17Q GAIN MUTATED               0                               17
  17Q GAIN WILD-TYPE             2                              107
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  17Q GAIN MUTATED                                               0
  17Q GAIN WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  17Q GAIN MUTATED                                     4
  17Q GAIN WILD-TYPE                                  12
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  17Q GAIN MUTATED                                           0
  17Q GAIN WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  17Q GAIN MUTATED                                              0
  17Q GAIN WILD-TYPE                                            3
D31V6, multiclass
D31V7, binary
                    cls
clus                   0   1
  17Q GAIN MUTATED     4  17
  17Q GAIN WILD-TYPE  21 108
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      4   17
  17Q GAIN WILD-TYPE   21  108
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  NO                 4                 21
  YES               17                108
D31V8, continuous
[1] "Remove cluster labels:" "17Q GAIN MUTATED"      
clus
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                 2                 41 
        TCGA-BI-A0VR         TCGA-C5-A1BF         TCGA-C5-A1BI 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BL         TCGA-C5-A1BN 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A1BQ         TCGA-C5-A1M7         TCGA-C5-A1MF 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MN         TCGA-C5-A2LS 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A2LV         TCGA-C5-A2LX         TCGA-C5-A2M2 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HF         TCGA-C5-A7CJ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-C5-A7CK         TCGA-C5-A7CL         TCGA-DR-A0ZM 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-DS-A5RQ         TCGA-DS-A7WF         TCGA-EX-A1H5 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FU-A2QG         TCGA-FU-A3EO         TCGA-FU-A3HY 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FU-A3TQ         TCGA-FU-A3WB         TCGA-FU-A3YQ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-FU-A5XV         TCGA-HM-A4S6         TCGA-HM-A6W2 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-IR-A3L7         TCGA-IR-A3LB         TCGA-IR-A3LH 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-JW-A5VI         TCGA-MU-A5YI         TCGA-Q1-A6DW 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-RA-A741         TCGA-UC-A7PD 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
D31V9, continuous

Clustering(32) Variable = 18P GAIN MUTATION ANALYSIS
D32V1, survival
                    sevent
clus2                  0   1
  18P GAIN MUTATED    14   3
  18P GAIN WILD-TYPE 101  25
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                17                126 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                 3                 25 
$`18P GAIN MUTATED`
TCGA-C5-A1BL TCGA-C5-A1M7 TCGA-C5-A1M9 TCGA-C5-A1MH TCGA-C5-A7CM TCGA-C5-A7UC 
      173.29        46.32        35.01        38.99         9.67        17.19 
TCGA-C5-A7UH TCGA-DR-A0ZL TCGA-DS-A3LQ TCGA-EA-A439 TCGA-EA-A5O9 TCGA-EA-A5ZF 
       60.69        87.75        22.98        14.50        13.91        14.96 
TCGA-EK-A2RO TCGA-FU-A3TX TCGA-HM-A3JK TCGA-MY-A5BF TCGA-Q1-A5R3 
        0.07         1.48        20.78         4.34         5.85 

$`18P GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 
      144.16       177.04        82.85         5.46        19.86        67.46 
TCGA-C5-A1M6 TCGA-C5-A1M8 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MK 
       31.40        30.21        53.16        35.61         2.73         2.43 
TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2LY 
       40.93         3.58        44.22        73.45        16.14        78.35 
TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CH 
       38.43         0.82        52.01        18.02        17.85        25.35 
TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7UE TCGA-C5-A7X3 TCGA-DR-A0ZM 
      101.82       134.33        15.48        85.55         9.34        58.88 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-DS-A7WF 
       36.76         2.66       117.99       118.65        16.83        16.18 
TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR 
        7.33         8.28         0.76         0.26         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-EA-A44S 
        0.82         0.62         1.18        14.50         1.81        12.66 
TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A6QX 
       12.82         0.26         1.48         0.69        14.99         0.62 
TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2R7 
        0.39        12.59        45.96         6.64         0.53         0.59 
TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL 
        0.07         4.04         0.03         0.36         1.18        23.70 
TCGA-EK-A2RM TCGA-EK-A2RN TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 
        2.24         0.10         0.10         0.10         0.03        20.35 
TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K 
        7.92         6.94        14.70         4.47         6.12         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI 
       23.84         0.92         2.17         0.66         1.02         1.45 
TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV 
        1.58         0.82         3.52         1.35         1.32         1.97 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA 
       25.41        21.67        14.93         4.11       147.39       137.16 
TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK 
       66.81       117.40        96.95        78.71        81.96        26.56 
TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y 
       36.36        16.64         0.10         0.89         0.07        13.87 
TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A6DT 
        0.03        29.72         0.07         3.72         3.45         3.39 
TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        3.72         5.75         6.25         3.88        11.67        93.99 

  18P GAIN MUTATED 18P GAIN WILD-TYPE 
              0.07               0.03 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
            173.29             177.04 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
             17.19               8.81 
[1] "0.1 - 173.3 (17.2)" "0.0 - 177.0 (8.8)" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D32V2, continuous
                    vv
clus                 T1 T2+T3+T4
  18P GAIN MUTATED    7        5
  18P GAIN WILD-TYPE 74       27
D32V3, multiclass
          clus
vv         18P GAIN MUTATED 18P GAIN WILD-TYPE
  T1                      7                 74
  T2+T3+T4                5                 27
D32V4, binary
                    cls
clus                  0  1
  18P GAIN MUTATED    7  4
  18P GAIN WILD-TYPE 66 32
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      7    4
  18P GAIN WILD-TYPE   66   32
   clus
vv  18P GAIN MUTATED 18P GAIN WILD-TYPE
  0                7                 66
  1                4                 32
                    vv
clus                 M0 M1 MX
  18P GAIN MUTATED    9  0  4
  18P GAIN WILD-TYPE 52  3 49
D32V5, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  M0                9                 52
  M1                0                  3
  MX                4                 49
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  18P GAIN MUTATED               0                               16
  18P GAIN WILD-TYPE             2                              108
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  18P GAIN MUTATED                                               1
  18P GAIN WILD-TYPE                                             3
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  18P GAIN MUTATED                                     1
  18P GAIN WILD-TYPE                                  15
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  18P GAIN MUTATED                                           0
  18P GAIN WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  18P GAIN MUTATED                                              0
  18P GAIN WILD-TYPE                                            3
D32V6, multiclass
D32V7, binary
                    cls
clus                   0   1
  18P GAIN MUTATED     5  13
  18P GAIN WILD-TYPE  20 112
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      5   13
  18P GAIN WILD-TYPE   20  112
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  NO                 5                 20
  YES               13                112
D32V8, continuous
D32V9, continuous

Clustering(33) Variable = 18Q GAIN MUTATION ANALYSIS
D33V1, survival
                    sevent
clus2                  0   1
  18Q GAIN MUTATED     7   1
  18Q GAIN WILD-TYPE 108  27
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 8                135 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 1                 27 
$`18Q GAIN MUTATED`
TCGA-C5-A1MH TCGA-C5-A7UH TCGA-DS-A3LQ TCGA-EA-A439 TCGA-EA-A5ZF TCGA-EK-A2RO 
       38.99        60.69        22.98        14.50        14.96         0.07 
TCGA-FU-A3TX TCGA-HM-A3JK 
        1.48        20.78 

$`18Q GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ 
      144.16       177.04       173.29        82.85         5.46        19.86 
TCGA-C5-A1M5 TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF 
       67.46        31.40        46.32        30.21        35.01        53.16 
TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS 
       35.61         2.73         2.43        40.93         3.58        44.22 
TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD 
       73.45        16.14        78.35        38.43         0.82        52.01 
TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL 
       18.02        17.85        25.35       101.82       134.33        15.48 
TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DR-A0ZM 
        9.67        17.19        85.55         9.34        87.75        58.88 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-DS-A7WF 
       36.76         2.66       117.99       118.65        16.83        16.18 
TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR 
        7.33         8.28         0.76         0.26         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-EA-A44S 
        0.82         0.62         1.18        14.50         1.81        12.66 
TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE 
       12.82         0.26         1.48        13.91         0.69        14.99 
TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2PG 
        0.62         0.39        12.59        45.96         6.64         0.53 
TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RJ 
        0.59         0.07         4.04         0.03         0.36         1.18 
TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A2RN TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN 
       23.70         2.24         0.10         0.10         0.10         0.03 
TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M 
       20.35         7.92         6.94        14.70         4.47         6.12 
TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ 
        1.22        23.84         0.92         2.17         0.66         1.02 
TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G 
        1.45         1.58         0.82         3.52         1.35         1.32 
TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 
        1.97        25.41        21.67        14.93         4.11       147.39 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI 
      137.16        66.81       117.40        96.95        78.71        81.96 
TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX 
       26.56        36.36        16.64         0.10         0.89         0.07 
TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 
       13.87         0.03        29.72         0.07         4.34         3.72 
TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R 
        3.45         5.85         3.39         3.72         5.75         6.25 
TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        3.88        11.67        93.99 

  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
              0.07               0.03 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
             60.69             177.04 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
             17.87              11.44 
[1] "0.1 - 60.7 (17.9)"  "0.0 - 177.0 (11.4)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D33V2, continuous
                    vv
clus                 T1 T2+T3+T4
  18Q GAIN MUTATED    2        3
  18Q GAIN WILD-TYPE 79       29
D33V3, multiclass
          clus
vv         18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  T1                      2                 79
  T2+T3+T4                3                 29
D33V4, binary
                    cls
clus                  0  1
  18Q GAIN MUTATED    2  2
  18Q GAIN WILD-TYPE 71 34
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      2    2
  18Q GAIN WILD-TYPE   71   34
   clus
vv  18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  0                2                 71
  1                2                 34
                    vv
clus                 M0 M1 MX
  18Q GAIN MUTATED    4  0  1
  18Q GAIN WILD-TYPE 57  3 52
D33V5, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  M0                4                 57
  M1                0                  3
  MX                1                 52
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  18Q GAIN MUTATED               0                                8
  18Q GAIN WILD-TYPE             2                              116
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  18Q GAIN MUTATED                                               0
  18Q GAIN WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  18Q GAIN MUTATED                                     0
  18Q GAIN WILD-TYPE                                  16
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  18Q GAIN MUTATED                                           0
  18Q GAIN WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  18Q GAIN MUTATED                                              0
  18Q GAIN WILD-TYPE                                            3
D33V6, multiclass
D33V7, binary
                    cls
clus                   0   1
  18Q GAIN MUTATED     3   5
  18Q GAIN WILD-TYPE  22 120
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      3    5
  18Q GAIN WILD-TYPE   22  120
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  NO                 3                 22
  YES                5                120
D33V8, continuous
[1] "Remove cluster labels:" "18Q GAIN MUTATED"      
clus
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                 1                 42 
        TCGA-BI-A0VR         TCGA-C5-A1BF         TCGA-C5-A1BI 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BL         TCGA-C5-A1BN 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A1BQ         TCGA-C5-A1M7         TCGA-C5-A1MF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A1MI         TCGA-C5-A1MN         TCGA-C5-A2LS 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A2LV         TCGA-C5-A2LX         TCGA-C5-A2M2 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HF         TCGA-C5-A7CJ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-C5-A7CK         TCGA-C5-A7CL         TCGA-C5-A7UE 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZM         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-FU-A2QG         TCGA-FU-A3EO 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FU-A3HY         TCGA-FU-A3TQ         TCGA-FU-A3WB 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-FU-A3YQ         TCGA-FU-A5XV         TCGA-HM-A4S6 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LB 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-JW-A5VI         TCGA-MU-A5YI 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-RA-A741         TCGA-UC-A7PD 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
D33V9, continuous

Clustering(34) Variable = 19P GAIN MUTATION ANALYSIS
D34V1, survival
                    sevent
clus2                 0  1
  19P GAIN MUTATED   16  4
  19P GAIN WILD-TYPE 99 24
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                20                123 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 4                 24 
$`19P GAIN MUTATED`
TCGA-C5-A0TN TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A2LY TCGA-C5-A3HD 
       11.44        53.16        38.99        35.61        78.35        52.01 
TCGA-C5-A7CH TCGA-DS-A0VL TCGA-DS-A3LQ TCGA-DS-A7WI TCGA-EA-A5O9 TCGA-EA-A5ZF 
       25.35         2.66        22.98         8.28        13.91        14.96 
TCGA-EK-A2R7 TCGA-EK-A2RM TCGA-EK-A2RN TCGA-FU-A40J TCGA-HM-A3JK TCGA-IR-A3LL 
        0.59         2.24         0.10         1.35        20.78        36.36 
TCGA-LP-A4AU TCGA-MY-A5BE 
        0.10         0.07 

$`19P GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BJ 
       49.48        57.04        68.84        18.74        36.56       144.16 
TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 
      177.04       173.29        82.85         5.46        19.86        67.46 
TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MJ TCGA-C5-A1MK 
       31.40        46.32        30.21        35.01         2.73         2.43 
TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2M1 
       40.93         3.58        44.22        73.45        16.14        38.43 
TCGA-C5-A2M2 TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL 
        0.82        18.02        17.85       101.82       134.33        15.48 
TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZL 
        9.67        17.19        85.55        60.69         9.34        87.75 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-DS-A7WF 
       58.88        36.76       117.99       118.65        16.83        16.18 
TCGA-DS-A7WH TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS 
        7.33         0.76         0.26         1.74         1.32         0.82 
TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S 
        0.62         1.18        14.50        14.50         1.81        12.66 
TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A6QX 
       12.82         0.26         1.48         0.69        14.99         0.62 
TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2RB 
        0.39        12.59        45.96         6.64         0.53         0.07 
TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RO 
        4.04         0.03         0.36         1.18        23.70         0.07 
TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 
        0.10         0.10         0.03        20.35         7.92         6.94 
TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG 
       14.70         4.47         6.12         1.22        23.84         0.92 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX 
        2.17         0.66         1.02         1.45         1.58         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ 
        0.82         3.52         1.32         1.97        25.41        21.67 
TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC 
       14.93         4.11       147.39       137.16        66.81       117.40 
TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-JW-A5VI TCGA-LP-A4AW 
       96.95        78.71        81.96        26.56        16.64         0.89 
TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BF TCGA-Q1-A5R1 
        0.07        13.87         0.03        29.72         4.34         3.72 
TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R 
        3.45         5.85         3.39         3.72         5.75         6.25 
TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        3.88        11.67        93.99 

  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              0.07               0.03 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
             78.35             177.04 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
            14.435             11.670 
[1] "0.1 - 78.3 (14.4)"  "0.0 - 177.0 (11.7)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D34V2, continuous
                    vv
clus                 T1 T2+T3+T4
  19P GAIN MUTATED   10        6
  19P GAIN WILD-TYPE 71       26
D34V3, multiclass
          clus
vv         19P GAIN MUTATED 19P GAIN WILD-TYPE
  T1                     10                 71
  T2+T3+T4                6                 26
D34V4, binary
                    cls
clus                  0  1
  19P GAIN MUTATED    6  9
  19P GAIN WILD-TYPE 67 27
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      6    9
  19P GAIN WILD-TYPE   67   27
   clus
vv  19P GAIN MUTATED 19P GAIN WILD-TYPE
  0                6                 67
  1                9                 27
                    vv
clus                 M0 M1 MX
  19P GAIN MUTATED    9  0  7
  19P GAIN WILD-TYPE 52  3 46
D34V5, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  M0                9                 52
  M1                0                  3
  MX                7                 46
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  19P GAIN MUTATED               0                               20
  19P GAIN WILD-TYPE             2                              104
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  19P GAIN MUTATED                                               0
  19P GAIN WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  19P GAIN MUTATED                                     1
  19P GAIN WILD-TYPE                                  15
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  19P GAIN MUTATED                                           0
  19P GAIN WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  19P GAIN MUTATED                                              0
  19P GAIN WILD-TYPE                                            3
D34V6, multiclass
D34V7, binary
                    cls
clus                   0   1
  19P GAIN MUTATED     7  14
  19P GAIN WILD-TYPE  18 111
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      7   14
  19P GAIN WILD-TYPE   18  111
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  NO                 7                 18
  YES               14                111
D34V8, continuous
D34V9, continuous

Clustering(35) Variable = 19Q GAIN MUTATION ANALYSIS
D35V1, survival
                    sevent
clus2                 0  1
  19Q GAIN MUTATED   20  9
  19Q GAIN WILD-TYPE 95 19
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                29                114 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                 9                 19 
$`19Q GAIN MUTATED`
TCGA-C5-A0TN TCGA-C5-A1BN TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A1MK 
       11.44         5.46        53.16        38.99        35.61         2.43 
TCGA-C5-A2LY TCGA-C5-A3HD TCGA-C5-A7CH TCGA-C5-A7CK TCGA-C5-A7X3 TCGA-DS-A0VL 
       78.35        52.01        25.35       134.33         9.34         2.66 
TCGA-DS-A3LQ TCGA-DS-A7WI TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A5O9 
       22.98         8.28        14.50        14.50         1.81        13.91 
TCGA-EA-A5ZF TCGA-EK-A2R7 TCGA-EK-A2RJ TCGA-EK-A2RM TCGA-EK-A2RN TCGA-FU-A40J 
       14.96         0.59         1.18         2.24         0.10         1.35 
TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-IR-A3LL TCGA-MY-A5BE TCGA-Q1-A5R3 
       21.67        20.78        36.36         0.07         5.85 

$`19Q GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BJ 
       49.48        57.04        68.84        18.74        36.56       144.16 
TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BQ TCGA-C5-A1M5 TCGA-C5-A1M6 
      177.04       173.29        82.85        19.86        67.46        31.40 
TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MJ TCGA-C5-A1MN TCGA-C5-A1MP 
       46.32        30.21        35.01         2.73        40.93         3.58 
TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HE 
       44.22        73.45        16.14        38.43         0.82        18.02 
TCGA-C5-A3HF TCGA-C5-A7CJ TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE 
       17.85       101.82        15.48         9.67        17.19        85.55 
TCGA-C5-A7UH TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VM TCGA-DS-A0VN 
       60.69        87.75        58.88        36.76       117.99       118.65 
TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ 
       16.83        16.18         7.33         0.76         0.26         1.74 
TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A44S TCGA-EA-A4BA 
        1.32         0.82         0.62         1.18        12.66        12.82 
TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A6QX TCGA-EA-A78R 
        0.26         1.48         0.69        14.99         0.62         0.39 
TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2RB TCGA-EK-A2RC 
       12.59        45.96         6.64         0.53         0.07         4.04 
TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RL TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK 
        0.03         0.36        23.70         0.07         0.10         0.10 
TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L 
        0.03        20.35         7.92         6.94        14.70         4.47 
TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY 
        6.12         1.22        23.84         0.92         2.17         0.66 
TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ 
        1.02         1.45         1.58         1.48         0.82         3.52 
TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 
        1.32         1.97        25.41        14.93         4.11       147.39 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI 
      137.16        66.81       117.40        96.95        78.71        81.96 
TCGA-IR-A3LK TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y 
       26.56        16.64         0.10         0.89         0.07        13.87 
TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A6DT 
        0.03        29.72         4.34         3.72         3.45         3.39 
TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        3.72         5.75         6.25         3.88        11.67        93.99 

  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
              0.07               0.03 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
            134.33             177.04 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
             13.91              12.13 
[1] "0.1 - 134.3 (13.9)" "0.0 - 177.0 (12.1)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
[1] "hr=" "2.3"
D35V2, continuous
                    vv
clus                 T1 T2+T3+T4
  19Q GAIN MUTATED   14        6
  19Q GAIN WILD-TYPE 67       26
D35V3, multiclass
          clus
vv         19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  T1                     14                 67
  T2+T3+T4                6                 26
D35V4, binary
                    cls
clus                  0  1
  19Q GAIN MUTATED   10  9
  19Q GAIN WILD-TYPE 63 27
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED     10    9
  19Q GAIN WILD-TYPE   63   27
   clus
vv  19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  0               10                 63
  1                9                 27
                    vv
clus                 M0 M1 MX
  19Q GAIN MUTATED   11  0 10
  19Q GAIN WILD-TYPE 50  3 43
D35V5, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  M0               11                 50
  M1                0                  3
  MX               10                 43
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  19Q GAIN MUTATED               0                               31
  19Q GAIN WILD-TYPE             2                               93
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  19Q GAIN MUTATED                                               0
  19Q GAIN WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  19Q GAIN MUTATED                                     1
  19Q GAIN WILD-TYPE                                  15
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  19Q GAIN MUTATED                                           0
  19Q GAIN WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  19Q GAIN MUTATED                                              0
  19Q GAIN WILD-TYPE                                            3
D35V6, multiclass
D35V7, binary
                    cls
clus                   0   1
  19Q GAIN MUTATED    10  22
  19Q GAIN WILD-TYPE  15 103
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED     10   22
  19Q GAIN WILD-TYPE   15  103
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  NO                10                 15
  YES               22                103
D35V8, continuous
D35V9, continuous

Clustering(36) Variable = 20P GAIN MUTATION ANALYSIS
D36V1, survival
                    sevent
clus2                 0  1
  20P GAIN MUTATED   37  9
  20P GAIN WILD-TYPE 78 19
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                46                 97 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                 9                 19 
$`20P GAIN MUTATED`
TCGA-C5-A1BJ TCGA-C5-A1BL TCGA-C5-A1M5 TCGA-C5-A1M6 TCGA-C5-A1M9 TCGA-C5-A1MI 
      144.16       173.29        67.46        31.40        35.01        35.61 
TCGA-C5-A1MJ TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LV TCGA-C5-A7CH TCGA-C5-A7CM 
        2.73        40.93         3.58        73.45        25.35         9.67 
TCGA-C5-A7UC TCGA-C5-A7UH TCGA-DS-A0VK TCGA-DS-A3LQ TCGA-DS-A7WH TCGA-EA-A1QS 
       17.19        60.69        36.76        22.98         7.33         0.76 
TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A439 TCGA-EA-A5FO TCGA-EA-A5ZF TCGA-EA-A6QX 
        1.74         0.82        14.50         1.48        14.96         0.62 
TCGA-EK-A2GZ TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RJ TCGA-EK-A2RM TCGA-FU-A23K 
       12.59         0.53         0.59         1.18         2.24         1.22 
TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3NI TCGA-FU-A40J TCGA-HM-A3JJ TCGA-HM-A3JK 
       23.84         2.17         1.45         1.35        21.67        20.78 
TCGA-IR-A3L7 TCGA-IR-A3LF TCGA-LP-A4AX TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 
      147.39        96.95         0.07         3.72         3.45         5.85 
TCGA-Q1-A6DT TCGA-Q1-A6DW TCGA-RA-A741 TCGA-UC-A7PF 
        3.39         5.75         3.88        93.99 

$`20P GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BK TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M7 TCGA-C5-A1M8 
      177.04        82.85         5.46        19.86        46.32        30.21 
TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MK TCGA-C5-A2LS TCGA-C5-A2LX TCGA-C5-A2LY 
       53.16        38.99         2.43        44.22        16.14        78.35 
TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CJ 
       38.43         0.82        52.01        18.02        17.85       101.82 
TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7UE TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DR-A0ZM 
      134.33        15.48        85.55         9.34        87.75        58.88 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WI 
        2.66       117.99       118.65        16.83        16.18         8.28 
TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A43B 
        0.26         1.32         0.62         1.18        14.50         1.81 
TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE 
       12.66        12.82         0.26        13.91         0.69        14.99 
TCGA-EA-A78R TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD 
        0.39        45.96         6.64         0.07         4.04         0.03 
TCGA-EK-A2RE TCGA-EK-A2RL TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK 
        0.36        23.70         0.10         0.07         0.10         0.10 
TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L 
        0.03        20.35         7.92         6.94        14.70         4.47 
TCGA-EX-A69M TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX 
        6.12         0.92         0.66         1.02         1.58         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A4S6 
        0.82         3.52         1.32         1.97        25.41        14.93 
TCGA-HM-A6W2 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LH TCGA-IR-A3LI 
        4.11       137.16        66.81       117.40        78.71        81.96 
TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-MU-A51Y 
       26.56        36.36        16.64         0.10         0.89        13.87 
TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A6DV TCGA-Q1-A73R 
        0.03        29.72         0.07         4.34         3.72         6.25 
TCGA-UC-A7PD 
       11.67 

  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              0.07               0.03 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
            173.29             177.04 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              8.50              12.82 
[1] "0.1 - 173.3 (8.5)"  "0.0 - 177.0 (12.8)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
[1] "hr=" "1"  
D36V2, continuous
                    vv
clus                 T1 T2+T3+T4
  20P GAIN MUTATED   24        8
  20P GAIN WILD-TYPE 57       24
D36V3, multiclass
          clus
vv         20P GAIN MUTATED 20P GAIN WILD-TYPE
  T1                     24                 57
  T2+T3+T4                8                 24
D36V4, binary
                    cls
clus                  0  1
  20P GAIN MUTATED   16 15
  20P GAIN WILD-TYPE 57 21
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     16   15
  20P GAIN WILD-TYPE   57   21
   clus
vv  20P GAIN MUTATED 20P GAIN WILD-TYPE
  0               16                 57
  1               15                 21
                    vv
clus                 M0 M1 MX
  20P GAIN MUTATED   19  0 17
  20P GAIN WILD-TYPE 42  3 36
D36V5, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  M0               19                 42
  M1                0                  3
  MX               17                 36
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  20P GAIN MUTATED               0                               39
  20P GAIN WILD-TYPE             2                               85
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  20P GAIN MUTATED                                               2
  20P GAIN WILD-TYPE                                             2
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  20P GAIN MUTATED                                     6
  20P GAIN WILD-TYPE                                  10
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  20P GAIN MUTATED                                           0
  20P GAIN WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  20P GAIN MUTATED                                              1
  20P GAIN WILD-TYPE                                            2
D36V6, multiclass
D36V7, binary
                    cls
clus                  0  1
  20P GAIN MUTATED    9 39
  20P GAIN WILD-TYPE 16 86
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED      9   39
  20P GAIN WILD-TYPE   16   86
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  NO                 9                 16
  YES               39                 86
D36V8, continuous
D36V9, continuous

Clustering(37) Variable = 20Q GAIN MUTATION ANALYSIS
D37V1, survival
                    sevent
clus2                 0  1
  20Q GAIN MUTATED   43  8
  20Q GAIN WILD-TYPE 72 20
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                51                 92 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                 8                 20 
$`20Q GAIN MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BJ TCGA-C5-A1BL TCGA-C5-A1M6 TCGA-C5-A1M9 
       49.48        57.04       144.16       173.29        31.40        35.01 
TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A7CH 
       35.61         2.73         2.43        40.93         3.58        25.35 
TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UH TCGA-DS-A3LQ TCGA-DS-A7WH TCGA-EA-A1QS 
        9.67        17.19        60.69        22.98         7.33         0.76 
TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A439 TCGA-EA-A5FO 
        0.26         1.74         1.32         0.82        14.50         1.48 
TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2PG TCGA-EK-A2R7 
       14.96         0.62        12.59        45.96         0.53         0.59 
TCGA-EK-A2RJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3EO 
        1.18         0.10         0.03         1.22        23.84         2.17 
TCGA-FU-A3HY TCGA-FU-A3NI TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-IR-A3L7 TCGA-IR-A3LF 
        0.66         1.45        21.67        20.78       147.39        96.95 
TCGA-IR-A3LH TCGA-LP-A4AX TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DT 
       78.71         0.07         3.72         3.45         5.85         3.39 
TCGA-Q1-A6DW TCGA-RA-A741 TCGA-UC-A7PF 
        5.75         3.88        93.99 

$`20Q GAIN WILD-TYPE`
TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BM 
       11.44        68.84        18.74        36.56       177.04        82.85 
TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1MF 
        5.46        19.86        67.46        46.32        30.21        53.16 
TCGA-C5-A1MH TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 
       38.99        44.22        73.45        16.14        78.35        38.43 
TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CJ TCGA-C5-A7CK 
        0.82        52.01        18.02        17.85       101.82       134.33 
TCGA-C5-A7CL TCGA-C5-A7UE TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
       15.48        85.55         9.34        87.75        58.88        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WI 
        2.66       117.99       118.65        16.83        16.18         8.28 
TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA 
        0.62         1.18        14.50         1.81        12.66        12.82 
TCGA-EA-A50E TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A78R TCGA-EK-A2IP 
        0.26        13.91         0.69        14.99         0.39         6.64 
TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RL TCGA-EK-A2RM 
        0.07         4.04         0.03         0.36        23.70         2.24 
TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 
        0.10         0.07         0.10        20.35         7.92         6.94 
TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A2QG TCGA-FU-A3HZ TCGA-FU-A3TQ 
       14.70         4.47         6.12         0.92         1.02         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV 
        1.48         0.82         3.52         1.35         1.32         1.97 
TCGA-HG-A2PA TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC 
       25.41        14.93         4.11       137.16        66.81       117.40 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW 
       81.96        26.56        36.36        16.64         0.10         0.89 
TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A6DV 
       13.87         0.03        29.72         0.07         4.34         3.72 
TCGA-Q1-A73R TCGA-UC-A7PD 
        6.25        11.67 

  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              0.03               0.03 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
            173.29             177.04 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              5.85              13.89 
[1] "0.0 - 173.3 (5.8)"  "0.0 - 177.0 (13.9)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
[1] "hr=" "1.3"
D37V2, continuous
                    vv
clus                 T1 T2+T3+T4
  20Q GAIN MUTATED   26       10
  20Q GAIN WILD-TYPE 55       22
D37V3, multiclass
          clus
vv         20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  T1                     26                 55
  T2+T3+T4               10                 22
D37V4, binary
                    cls
clus                  0  1
  20Q GAIN MUTATED   21 14
  20Q GAIN WILD-TYPE 52 22
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     21   14
  20Q GAIN WILD-TYPE   52   22
   clus
vv  20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  0               21                 52
  1               14                 22
                    vv
clus                 M0 M1 MX
  20Q GAIN MUTATED   23  0 17
  20Q GAIN WILD-TYPE 38  3 36
D37V5, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  M0               23                 38
  M1                0                  3
  MX               17                 36
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  20Q GAIN MUTATED               0                               45
  20Q GAIN WILD-TYPE             2                               79
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  20Q GAIN MUTATED                                               2
  20Q GAIN WILD-TYPE                                             2
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  20Q GAIN MUTATED                                     6
  20Q GAIN WILD-TYPE                                  10
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  20Q GAIN MUTATED                                           0
  20Q GAIN WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  20Q GAIN MUTATED                                              1
  20Q GAIN WILD-TYPE                                            2
D37V6, multiclass
D37V7, binary
                    cls
clus                  0  1
  20Q GAIN MUTATED   10 44
  20Q GAIN WILD-TYPE 15 81
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     10   44
  20Q GAIN WILD-TYPE   15   81
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  NO                10                 15
  YES               44                 81
D37V8, continuous
D37V9, continuous

Clustering(38) Variable = 21Q GAIN MUTATION ANALYSIS
D38V1, survival
                    sevent
clus2                  0   1
  21Q GAIN MUTATED    10   6
  21Q GAIN WILD-TYPE 105  22
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                16                127 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                 6                 22 
$`21Q GAIN MUTATED`
TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M6 TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A1MK 
        5.46        19.86        31.40        38.99        35.61         2.43 
TCGA-C5-A1MP TCGA-EA-A1QS TCGA-EA-A3HQ TCGA-EA-A5O9 TCGA-EK-A2RM TCGA-FU-A3TX 
        3.58         0.76         1.74        13.91         2.24         1.48 
TCGA-HM-A3JK TCGA-IR-A3LL TCGA-LP-A4AU TCGA-MY-A5BE 
       20.78        36.36         0.10         0.07 

$`21Q GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1M5 TCGA-C5-A1M7 
      144.16       177.04       173.29        82.85        67.46        46.32 
TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF TCGA-C5-A1MJ TCGA-C5-A1MN TCGA-C5-A2LS 
       30.21        35.01        53.16         2.73        40.93        44.22 
TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD 
       73.45        16.14        78.35        38.43         0.82        52.01 
TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL 
       18.02        17.85        25.35       101.82       134.33        15.48 
TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZL 
        9.67        17.19        85.55        60.69         9.34        87.75 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
       58.88        36.76         2.66       117.99       118.65        22.98 
TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QT TCGA-EA-A3HR 
       16.83        16.18         7.33         8.28         0.26         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B 
        0.82         0.62         1.18        14.50        14.50         1.81 
TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5ZD TCGA-EA-A5ZE 
       12.66        12.82         0.26         1.48         0.69        14.99 
TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP 
       14.96         0.62         0.39        12.59        45.96         6.64 
TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE 
        0.53         0.59         0.07         4.04         0.03         0.36 
TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK 
        1.18        23.70         0.10         0.07         0.10         0.10 
TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L 
        0.03        20.35         7.92         6.94        14.70         4.47 
TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY 
        6.12         1.22        23.84         0.92         2.17         0.66 
TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J 
        1.02         1.45         1.58         0.82         3.52         1.35 
TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A4S6 TCGA-HM-A6W2 
        1.32         1.97        25.41        21.67        14.93         4.11 
TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH 
      147.39       137.16        66.81       117.40        96.95        78.71 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-JW-A5VI TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y 
       81.96        26.56        16.64         0.89         0.07        13.87 
TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 
        0.03        29.72         4.34         3.72         3.45         5.85 
TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD 
        3.39         3.72         5.75         6.25         3.88        11.67 
TCGA-UC-A7PF 
       93.99 

  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              0.07               0.03 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
             38.99             177.04 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              4.52              12.66 
[1] "0.1 - 39.0 (4.5)"   "0.0 - 177.0 (12.7)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
[1] "hr=" "4.1"
D38V2, continuous
                    vv
clus                 T1 T2+T3+T4
  21Q GAIN MUTATED    8        3
  21Q GAIN WILD-TYPE 73       29
D38V3, multiclass
          clus
vv         21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  T1                      8                 73
  T2+T3+T4                3                 29
D38V4, binary
                    cls
clus                  0  1
  21Q GAIN MUTATED    7  4
  21Q GAIN WILD-TYPE 66 32
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      7    4
  21Q GAIN WILD-TYPE   66   32
   clus
vv  21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  0                7                 66
  1                4                 32
                    vv
clus                 M0 M1 MX
  21Q GAIN MUTATED    7  0  4
  21Q GAIN WILD-TYPE 54  3 49
D38V5, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  M0                7                 54
  M1                0                  3
  MX                4                 49
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  21Q GAIN MUTATED               0                               19
  21Q GAIN WILD-TYPE             2                              105
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  21Q GAIN MUTATED                                               0
  21Q GAIN WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  21Q GAIN MUTATED                                     0
  21Q GAIN WILD-TYPE                                  16
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  21Q GAIN MUTATED                                           0
  21Q GAIN WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  21Q GAIN MUTATED                                              0
  21Q GAIN WILD-TYPE                                            3
D38V6, multiclass
D38V7, binary
                    cls
clus                   0   1
  21Q GAIN MUTATED     6  13
  21Q GAIN WILD-TYPE  19 112
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      6   13
  21Q GAIN WILD-TYPE   19  112
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  NO                 6                 19
  YES               13                112
D38V8, continuous
D38V9, continuous

Clustering(39) Variable = 22Q GAIN MUTATION ANALYSIS
D39V1, survival
                    sevent
clus2                 0  1
  22Q GAIN MUTATED   16  1
  22Q GAIN WILD-TYPE 99 27
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                17                126 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 1                 27 
$`22Q GAIN MUTATED`
TCGA-BI-A0VS TCGA-C5-A1BJ TCGA-C5-A2LY TCGA-C5-A7CH TCGA-C5-A7UC TCGA-C5-A7UH 
       57.04       144.16        78.35        25.35        17.19        60.69 
TCGA-DS-A3LQ TCGA-EA-A1QS TCGA-EA-A5ZF TCGA-EK-A2RM TCGA-EK-A2RO TCGA-FU-A3NI 
       22.98         0.76        14.96         2.24         0.07         1.45 
TCGA-FU-A40J TCGA-JW-A5VI TCGA-LP-A4AU TCGA-MU-A51Y TCGA-MY-A5BE 
        1.35        16.64         0.10        13.87         0.07 

$`22Q GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BK 
       49.48        11.44        68.84        18.74        36.56       177.04 
TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 TCGA-C5-A1M6 
      173.29        82.85         5.46        19.86        67.46        31.40 
TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MI 
       46.32        30.21        35.01        53.16        38.99        35.61 
TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV 
        2.73         2.43        40.93         3.58        44.22        73.45 
TCGA-C5-A2LX TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF 
       16.14        38.43         0.82        52.01        18.02        17.85 
TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UE TCGA-C5-A7X3 
      101.82       134.33        15.48         9.67        85.55         9.34 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN 
       87.75        58.88        36.76         2.66       117.99       118.65 
TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QT TCGA-EA-A3HQ 
       16.83        16.18         7.33         8.28         0.26         1.74 
TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A439 
        1.32         0.82         0.62         1.18        14.50        14.50 
TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 
        1.81        12.66        12.82         0.26         1.48        13.91 
TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 
        0.69        14.99         0.62         0.39        12.59        45.96 
TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD 
        6.64         0.53         0.59         0.07         4.04         0.03 
TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RN TCGA-EK-A3GJ TCGA-EK-A3GK 
        0.36         1.18        23.70         0.10         0.10         0.10 
TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L 
        0.03        20.35         7.92         6.94        14.70         4.47 
TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY 
        6.12         1.22        23.84         0.92         2.17         0.66 
TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G 
        1.02         1.58         1.48         0.82         3.52         1.32 
TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 
        1.97        25.41        21.67        20.78        14.93         4.11 
TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH 
      147.39       137.16        66.81       117.40        96.95        78.71 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A5YI 
       81.96        26.56        36.36         0.89         0.07         0.03 
TCGA-MY-A5BD TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DT 
       29.72         4.34         3.72         3.45         5.85         3.39 
TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        3.72         5.75         6.25         3.88        11.67        93.99 

  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
              0.07               0.03 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
            144.16             177.04 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
            14.960             11.555 
[1] "0.1 - 144.2 (15.0)" "0.0 - 177.0 (11.6)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
[1] "hr=" "3.5"
D39V2, continuous
                    vv
clus                 T1 T2+T3+T4
  22Q GAIN MUTATED    7        5
  22Q GAIN WILD-TYPE 74       27
D39V3, multiclass
          clus
vv         22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  T1                      7                 74
  T2+T3+T4                5                 27
D39V4, binary
                    cls
clus                  0  1
  22Q GAIN MUTATED    6  4
  22Q GAIN WILD-TYPE 67 32
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      6    4
  22Q GAIN WILD-TYPE   67   32
   clus
vv  22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  0                6                 67
  1                4                 32
                    vv
clus                 M0 M1 MX
  22Q GAIN MUTATED    7  0  5
  22Q GAIN WILD-TYPE 54  3 48
D39V5, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  M0                7                 54
  M1                0                  3
  MX                5                 48
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  22Q GAIN MUTATED               0                               17
  22Q GAIN WILD-TYPE             2                              107
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  22Q GAIN MUTATED                                               0
  22Q GAIN WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  22Q GAIN MUTATED                                     1
  22Q GAIN WILD-TYPE                                  15
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  22Q GAIN MUTATED                                           0
  22Q GAIN WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  22Q GAIN MUTATED                                              0
  22Q GAIN WILD-TYPE                                            3
D39V6, multiclass
D39V7, binary
                    cls
clus                   0   1
  22Q GAIN MUTATED     3  15
  22Q GAIN WILD-TYPE  22 110
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      3   15
  22Q GAIN WILD-TYPE   22  110
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  NO                 3                 22
  YES               15                110
D39V8, continuous
[1] "Remove cluster labels:" "22Q GAIN MUTATED"      
clus
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                 2                 41 
        TCGA-BI-A0VR         TCGA-C5-A1BF         TCGA-C5-A1BI 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A1BL         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A1M7         TCGA-C5-A1MF         TCGA-C5-A1MH 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A1MI         TCGA-C5-A1MN         TCGA-C5-A2LS 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A2LV         TCGA-C5-A2LX         TCGA-C5-A2M2 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HF         TCGA-C5-A7CJ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-C5-A7CK         TCGA-C5-A7CL         TCGA-C5-A7UE 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-DR-A0ZM         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-FU-A2QG         TCGA-FU-A3EO 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FU-A3HY         TCGA-FU-A3TQ         TCGA-FU-A3WB 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-FU-A3YQ         TCGA-FU-A5XV         TCGA-HM-A4S6 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LB 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-MU-A5YI         TCGA-Q1-A6DW 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-RA-A741         TCGA-UC-A7PD 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
D39V9, continuous

Clustering(40) Variable = XQ GAIN MUTATION ANALYSIS
D40V1, survival
                   sevent
clus2                0  1
  XQ GAIN MUTATED   16  2
  XQ GAIN WILD-TYPE 99 26
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               18               125 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
                2                26 
$`XQ GAIN MUTATED`
TCGA-C5-A1BK TCGA-C5-A1M5 TCGA-C5-A1M7 TCGA-C5-A1MF TCGA-C5-A1MP TCGA-C5-A2LV 
      177.04        67.46        46.32        53.16         3.58        73.45 
TCGA-C5-A2LX TCGA-C5-A7CH TCGA-DS-A3LQ TCGA-EA-A5O9 TCGA-EA-A5ZF TCGA-EK-A2H0 
       16.14        25.35        22.98        13.91        14.96        45.96 
TCGA-EK-A2PG TCGA-EK-A2RB TCGA-FU-A3NI TCGA-IR-A3LB TCGA-IR-A3LL TCGA-Q1-A5R3 
        0.53         0.07         1.45        66.81        36.36         5.85 

$`XQ GAIN WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M6 
      144.16       173.29        82.85         5.46        19.86        31.40 
TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MK 
       30.21        35.01        38.99        35.61         2.73         2.43 
TCGA-C5-A1MN TCGA-C5-A2LS TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD 
       40.93        44.22        78.35        38.43         0.82        52.01 
TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM 
       18.02        17.85       101.82       134.33        15.48         9.67 
TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DR-A0ZM 
       17.19        85.55        60.69         9.34        87.75        58.88 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-DS-A7WF 
       36.76         2.66       117.99       118.65        16.83        16.18 
TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR 
        7.33         8.28         0.76         0.26         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B 
        0.82         0.62         1.18        14.50        14.50         1.81 
TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5ZD TCGA-EA-A5ZE 
       12.66        12.82         0.26         1.48         0.69        14.99 
TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2IP TCGA-EK-A2R7 TCGA-EK-A2RC 
        0.62         0.39        12.59         6.64         0.59         4.04 
TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A2RN 
        0.03         0.36         1.18        23.70         2.24         0.10 
TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 
        0.07         0.10         0.10         0.03        20.35         7.92 
TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L 
        6.94        14.70         4.47         6.12         1.22        23.84 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX 
        0.92         2.17         0.66         1.02         1.58         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA 
        0.82         3.52         1.35         1.32         1.97        25.41 
TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA 
       21.67        20.78        14.93         4.11       147.39       137.16 
TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-JW-A5VI 
      117.40        96.95        78.71        81.96        26.56        16.64 
TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD 
        0.10         0.89         0.07        13.87         0.03        29.72 
TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A6DT TCGA-Q1-A6DV 
        0.07         4.34         3.72         3.45         3.39         3.72 
TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        5.75         6.25         3.88        11.67        93.99 

  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
             0.07              0.03 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
           177.04            173.29 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
           24.165             9.340 
[1] "0.1 - 177.0 (24.2)" "0.0 - 173.3 (9.3)" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
[1] "hr=" "2.7"
D40V2, continuous
                   vv
clus                T1 T2+T3+T4
  XQ GAIN MUTATED   11        2
  XQ GAIN WILD-TYPE 70       30
D40V3, multiclass
          clus
vv         XQ GAIN MUTATED XQ GAIN WILD-TYPE
  T1                    11                70
  T2+T3+T4               2                30
D40V4, binary
                   cls
clus                 0  1
  XQ GAIN MUTATED    7  5
  XQ GAIN WILD-TYPE 66 31
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      7    5
  XQ GAIN WILD-TYPE   66   31
   clus
vv  XQ GAIN MUTATED XQ GAIN WILD-TYPE
  0               7                66
  1               5                31
                   vv
clus                M0 M1 MX
  XQ GAIN MUTATED    6  0  8
  XQ GAIN WILD-TYPE 55  3 45
D40V5, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  M0               6                55
  M1               0                 3
  MX               8                45
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  XQ GAIN MUTATED               0                               18
  XQ GAIN WILD-TYPE             2                              106
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  XQ GAIN MUTATED                                               0
  XQ GAIN WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  XQ GAIN MUTATED                                     1
  XQ GAIN WILD-TYPE                                  15
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  XQ GAIN MUTATED                                           0
  XQ GAIN WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  XQ GAIN MUTATED                                              0
  XQ GAIN WILD-TYPE                                            3
D40V6, multiclass
D40V7, binary
                   cls
clus                  0   1
  XQ GAIN MUTATED     3  16
  XQ GAIN WILD-TYPE  22 109
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      3   16
  XQ GAIN WILD-TYPE   22  109
     clus
vv    XQ GAIN MUTATED XQ GAIN WILD-TYPE
  NO                3                22
  YES              16               109
D40V8, continuous
D40V9, continuous

Clustering(41) Variable = 1P LOSS MUTATION ANALYSIS
D41V1, survival
                   sevent
clus2                 0   1
  1P LOSS MUTATED     3   1
  1P LOSS WILD-TYPE 112  27
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                4               139 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                1                27 
$`1P LOSS MUTATED`
TCGA-C5-A1MI TCGA-C5-A7CH TCGA-C5-A7UH TCGA-DS-A0VN 
       35.61        25.35        60.69       118.65 

$`1P LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ 
      144.16       177.04       173.29        82.85         5.46        19.86 
TCGA-C5-A1M5 TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF 
       67.46        31.40        46.32        30.21        35.01        53.16 
TCGA-C5-A1MH TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS 
       38.99         2.73         2.43        40.93         3.58        44.22 
TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD 
       73.45        16.14        78.35        38.43         0.82        52.01 
TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM 
       18.02        17.85       101.82       134.33        15.48         9.67 
TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
       17.19        85.55         9.34        87.75        58.88        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH 
        2.66       117.99        22.98        16.83        16.18         7.33 
TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS 
        8.28         0.76         0.26         1.74         1.32         0.82 
TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S 
        0.62         1.18        14.50        14.50         1.81        12.66 
TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE 
       12.82         0.26         1.48        13.91         0.69        14.99 
TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP 
       14.96         0.62         0.39        12.59        45.96         6.64 
TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE 
        0.53         0.59         0.07         4.04         0.03         0.36 
TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ 
        1.18        23.70         2.24         0.10         0.07         0.10 
TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 
        0.10         0.03        20.35         7.92         6.94        14.70 
TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO 
        4.47         6.12         1.22        23.84         0.92         2.17 
TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB 
        0.66         1.02         1.45         1.58         1.48         0.82 
TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ 
        3.52         1.35         1.32         1.97        25.41        21.67 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB 
       20.78        14.93         4.11       147.39       137.16        66.81 
TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL 
      117.40        96.95        78.71        81.96        26.56        36.36 
TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI 
       16.64         0.10         0.89         0.07        13.87         0.03 
TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 
       29.72         0.07         4.34         3.72         3.45         5.85 
TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD 
        3.39         3.72         5.75         6.25         3.88        11.67 
TCGA-UC-A7PF 
       93.99 

  1P LOSS MUTATED 1P LOSS WILD-TYPE 
            25.35              0.03 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
           118.65            177.04 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
            48.15             11.44 
[1] "25.4 - 118.7 (48.1)" "0.0 - 177.0 (11.4)" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D41V2, continuous
                   vv
clus                T1 T2+T3+T4
  1P LOSS MUTATED    2        0
  1P LOSS WILD-TYPE 79       32
D41V3, multiclass
[1] "Remove cluster labels:" "1P LOSS MUTATED"       
clus
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                2               111 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A1BI        TCGA-C5-A1BK        TCGA-C5-A1BL        TCGA-C5-A1BM 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M7        TCGA-C5-A1M8        TCGA-C5-A1M9 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A1MF        TCGA-C5-A1MJ        TCGA-C5-A1MP        TCGA-C5-A2LS 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY        TCGA-C5-A2M1 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A3HE        TCGA-C5-A7CJ        TCGA-C5-A7UC        TCGA-DR-A0ZL 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DR-A0ZM        TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2IP        TCGA-EK-A2R7        TCGA-EK-A2RD 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RK        TCGA-EK-A2RL 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EK-A2RN        TCGA-EK-A3GJ        TCGA-EK-A3GK        TCGA-EX-A1H5 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EX-A1H6        TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EX-A69M        TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FU-A3EO        TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FU-A3TQ        TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FU-A40J        TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HM-A3JJ        TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IR-A3L7        TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IR-A3LF        TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IR-A3LL        TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AV 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-LP-A4AW        TCGA-LP-A4AX        TCGA-MU-A51Y        TCGA-MU-A5YI 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MY-A5BD        TCGA-MY-A5BE        TCGA-MY-A5BF        TCGA-Q1-A5R1 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-Q1-A6DV        TCGA-UC-A7PD        TCGA-UC-A7PF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
D41V4, binary
                   cls
clus                 0  1
  1P LOSS MUTATED    1  1
  1P LOSS WILD-TYPE 72 35
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      1    1
  1P LOSS WILD-TYPE   72   35
   clus
vv  1P LOSS MUTATED 1P LOSS WILD-TYPE
  0               1                72
  1               1                35
                   vv
clus                M0 M1 MX
  1P LOSS MUTATED    2  0  0
  1P LOSS WILD-TYPE 59  3 53
D41V5, multiclass
[1] "Remove cluster labels:" "1P LOSS MUTATED"       
clus
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                2               115 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BK        TCGA-C5-A1BL 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A1BM        TCGA-C5-A1M5        TCGA-C5-A1M7        TCGA-C5-A1M8 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MJ        TCGA-C5-A1MP 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A3HE        TCGA-C5-A7CJ        TCGA-C5-A7UC 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DR-A0ZL        TCGA-DR-A0ZM        TCGA-DS-A0VK        TCGA-DS-A0VL 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DS-A0VM        TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DS-A7WH        TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EA-A3HQ        TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EA-A3QE        TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EA-A44S        TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EA-A5O9        TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EA-A6QX        TCGA-EA-A78R        TCGA-EK-A2IP        TCGA-EK-A2R7 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RK 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EK-A2RL        TCGA-EK-A2RN        TCGA-EK-A3GK        TCGA-EX-A1H5 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EX-A1H6        TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EX-A69M        TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A3EO 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AV        TCGA-LP-A4AW 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-LP-A4AX        TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MY-A5BE        TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-Q1-A5R3        TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-Q1-A73R        TCGA-UC-A7PD        TCGA-UC-A7PF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  1P LOSS MUTATED               0                                5
  1P LOSS WILD-TYPE             2                              119
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  1P LOSS MUTATED                                               0
  1P LOSS WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  1P LOSS MUTATED                                     1
  1P LOSS WILD-TYPE                                  15
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  1P LOSS MUTATED                                           0
  1P LOSS WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  1P LOSS MUTATED                                              0
  1P LOSS WILD-TYPE                                            3
D41V6, multiclass
D41V7, binary
                   cls
clus                  0   1
  1P LOSS MUTATED     2   4
  1P LOSS WILD-TYPE  23 121
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      2    4
  1P LOSS WILD-TYPE   23  121
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  NO                2                23
  YES               4               121
D41V8, continuous
[1] "Remove cluster labels:" "1P LOSS MUTATED"       
clus
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                1                42 
       TCGA-BI-A0VR        TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BN        TCGA-C5-A1BQ        TCGA-C5-A1M7 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MN        TCGA-C5-A2LS 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2M2        TCGA-C5-A3HD 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CJ        TCGA-C5-A7CK        TCGA-C5-A7CL 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A7UE        TCGA-DR-A0ZM        TCGA-DS-A5RQ        TCGA-DS-A7WF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EX-A1H5        TCGA-FU-A2QG        TCGA-FU-A3EO        TCGA-FU-A3HY 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FU-A3TQ        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A5XV 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7        TCGA-IR-A3LB 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-JW-A5VI        TCGA-MU-A5YI        TCGA-Q1-A6DW 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
D41V9, continuous
[1] "Remove cluster labels:" "1P LOSS MUTATED"       
clus
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
                2                91 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BK        TCGA-C5-A1BL        TCGA-C5-A1BM 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M7        TCGA-C5-A1M8        TCGA-C5-A1M9 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A1MF        TCGA-C5-A1MJ        TCGA-C5-A1MP        TCGA-C5-A2LV 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A2LX        TCGA-C5-A2LY        TCGA-C5-A2M1        TCGA-C5-A3HF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-C5-A7CJ        TCGA-C5-A7UC        TCGA-C5-A7UE        TCGA-DR-A0ZL 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DR-A0ZM        TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3Y4 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EA-A43B        TCGA-EA-A44S        TCGA-EA-A4BA        TCGA-EA-A50E 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EA-A5FO        TCGA-EA-A5O9        TCGA-EA-A6QX        TCGA-EK-A2RO 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EX-A1H5        TCGA-EX-A1H6        TCGA-EX-A3L1 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-EX-A69L        TCGA-EX-A69M        TCGA-FU-A23K        TCGA-FU-A23L 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FU-A2QG        TCGA-FU-A3EO        TCGA-FU-A3HY        TCGA-FU-A3HZ 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FU-A3NI        TCGA-FU-A3TQ        TCGA-FU-A3TX        TCGA-FU-A3WB 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-FU-A3YQ        TCGA-FU-A40J        TCGA-FU-A57G        TCGA-FU-A5XV 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-HG-A2PA        TCGA-HM-A3JJ        TCGA-HM-A3JK        TCGA-HM-A4S6 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IR-A3L7        TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IR-A3LF        TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-IR-A3LL        TCGA-LP-A4AX        TCGA-MU-A51Y        TCGA-MU-A5YI 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MY-A5BD        TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A6DV 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 

Clustering(42) Variable = 1Q LOSS MUTATION ANALYSIS
D42V1, survival
                   sevent
clus2                 0   1
  1Q LOSS MUTATED     4   2
  1Q LOSS WILD-TYPE 111  26
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                6               137 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                2                26 
$`1Q LOSS MUTATED`
TCGA-C5-A1MI TCGA-C5-A2LV TCGA-C5-A7CH TCGA-C5-A7UH TCGA-DS-A0VN TCGA-HM-A3JJ 
       35.61        73.45        25.35        60.69       118.65        21.67 

$`1Q LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ 
      144.16       177.04       173.29        82.85         5.46        19.86 
TCGA-C5-A1M5 TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF 
       67.46        31.40        46.32        30.21        35.01        53.16 
TCGA-C5-A1MH TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS 
       38.99         2.73         2.43        40.93         3.58        44.22 
TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE 
       16.14        78.35        38.43         0.82        52.01        18.02 
TCGA-C5-A3HF TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC 
       17.85       101.82       134.33        15.48         9.67        17.19 
TCGA-C5-A7UE TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL 
       85.55         9.34        87.75        58.88        36.76         2.66 
TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI 
      117.99        22.98        16.83        16.18         7.33         8.28 
TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
        0.76         0.26         1.74         1.32         0.82         0.62 
TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA 
        1.18        14.50        14.50         1.81        12.66        12.82 
TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF 
        0.26         1.48        13.91         0.69        14.99        14.96 
TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2PG 
        0.62         0.39        12.59        45.96         6.64         0.53 
TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RJ 
        0.59         0.07         4.04         0.03         0.36         1.18 
TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK 
       23.70         2.24         0.10         0.07         0.10         0.10 
TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L 
        0.03        20.35         7.92         6.94        14.70         4.47 
TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY 
        6.12         1.22        23.84         0.92         2.17         0.66 
TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ 
        1.02         1.45         1.58         1.48         0.82         3.52 
TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JK TCGA-HM-A4S6 
        1.35         1.32         1.97        25.41        20.78        14.93 
TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF 
        4.11       147.39       137.16        66.81       117.40        96.95 
TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU 
       78.71        81.96        26.56        36.36        16.64         0.10 
TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE 
        0.89         0.07        13.87         0.03        29.72         0.07 
TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DV 
        4.34         3.72         3.45         5.85         3.39         3.72 
TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        5.75         6.25         3.88        11.67        93.99 

  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
            21.67              0.03 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
           118.65            177.04 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
            48.15              9.67 
[1] "21.7 - 118.7 (48.1)" "0.0 - 177.0 (9.7)"  
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D42V2, continuous
                   vv
clus                T1 T2+T3+T4
  1Q LOSS MUTATED    4        0
  1Q LOSS WILD-TYPE 77       32
D42V3, multiclass
          clus
vv         1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  T1                     4                77
  T2+T3+T4               0                32
D42V4, binary
                   cls
clus                 0  1
  1Q LOSS MUTATED    1  3
  1Q LOSS WILD-TYPE 72 33
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      1    3
  1Q LOSS WILD-TYPE   72   33
   clus
vv  1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  0               1                72
  1               3                33
                   vv
clus                M0 M1 MX
  1Q LOSS MUTATED    2  0  2
  1Q LOSS WILD-TYPE 59  3 51
D42V5, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  M0               2                59
  M1               0                 3
  MX               2                51
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  1Q LOSS MUTATED               0                                6
  1Q LOSS WILD-TYPE             2                              118
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  1Q LOSS MUTATED                                               0
  1Q LOSS WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  1Q LOSS MUTATED                                     0
  1Q LOSS WILD-TYPE                                  16
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  1Q LOSS MUTATED                                           0
  1Q LOSS WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  1Q LOSS MUTATED                                              0
  1Q LOSS WILD-TYPE                                            3
D42V6, multiclass
D42V7, binary
                   cls
clus                  0   1
  1Q LOSS MUTATED     3   3
  1Q LOSS WILD-TYPE  22 122
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      3    3
  1Q LOSS WILD-TYPE   22  122
     clus
vv    1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  NO                3                22
  YES               3               122
D42V8, continuous
[1] "Remove cluster labels:" "1Q LOSS MUTATED"       
clus
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                2                41 
       TCGA-BI-A0VR        TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BN        TCGA-C5-A1BQ        TCGA-C5-A1M7 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MN        TCGA-C5-A2LS 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A2LX        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HF 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-C5-A7CJ        TCGA-C5-A7CK        TCGA-C5-A7CL        TCGA-C5-A7UE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-DR-A0ZM        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-EX-A1H5 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FU-A2QG        TCGA-FU-A3EO        TCGA-FU-A3HY        TCGA-FU-A3TQ 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A5XV        TCGA-HM-A4S6 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-HM-A6W2        TCGA-IR-A3L7        TCGA-IR-A3LB        TCGA-IR-A3LH 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-MU-A5YI        TCGA-Q1-A6DW        TCGA-RA-A741 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-UC-A7PD 
"1Q LOSS WILD-TYPE" 
D42V9, continuous

Clustering(43) Variable = 2P LOSS MUTATION ANALYSIS
D43V1, survival
                   sevent
clus2                 0   1
  2P LOSS MUTATED     7   1
  2P LOSS WILD-TYPE 108  27
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                8               135 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                1                27 
$`2P LOSS MUTATED`
TCGA-BI-A0VS TCGA-C5-A1MH TCGA-C5-A3HE TCGA-DS-A0VN TCGA-EA-A3HR TCGA-EK-A2PG 
       57.04        38.99        18.02       118.65         1.32         0.53 
TCGA-EK-A2RN TCGA-Q1-A5R1 
        0.10         3.72 

$`2P LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BJ 
       49.48        11.44        68.84        18.74        36.56       144.16 
TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 
      177.04       173.29        82.85         5.46        19.86        67.46 
TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF TCGA-C5-A1MI 
       31.40        46.32        30.21        35.01        53.16        35.61 
TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV 
        2.73         2.43        40.93         3.58        44.22        73.45 
TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HF 
       16.14        78.35        38.43         0.82        52.01        17.85 
TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC 
       25.35       101.82       134.33        15.48         9.67        17.19 
TCGA-C5-A7UE TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
       85.55        60.69         9.34        87.75        58.88        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH 
        2.66       117.99        22.98        16.83        16.18         7.33 
TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT 
        8.28         0.76         0.26         1.74         0.82         0.62 
TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA 
        1.18        14.50        14.50         1.81        12.66        12.82 
TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF 
        0.26         1.48        13.91         0.69        14.99        14.96 
TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2R7 
        0.62         0.39        12.59        45.96         6.64         0.59 
TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL 
        0.07         4.04         0.03         0.36         1.18        23.70 
TCGA-EK-A2RM TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 
        2.24         0.07         0.10         0.10         0.03        20.35 
TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K 
        7.92         6.94        14.70         4.47         6.12         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI 
       23.84         0.92         2.17         0.66         1.02         1.45 
TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G 
        1.58         1.48         0.82         3.52         1.35         1.32 
TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 
        1.97        25.41        21.67        20.78        14.93         4.11 
TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH 
      147.39       137.16        66.81       117.40        96.95        78.71 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW 
       81.96        26.56        36.36        16.64         0.10         0.89 
TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
        0.07        13.87         0.03        29.72         0.07         4.34 
TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R 
        3.45         5.85         3.39         3.72         5.75         6.25 
TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        3.88        11.67        93.99 

  2P LOSS MUTATED 2P LOSS WILD-TYPE 
             0.10              0.03 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
           118.65            177.04 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
            10.87             12.59 
[1] "0.1 - 118.7 (10.9)" "0.0 - 177.0 (12.6)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
[1] "hr=" "1.8"
D43V2, continuous
                   vv
clus                T1 T2+T3+T4
  2P LOSS MUTATED    4        2
  2P LOSS WILD-TYPE 77       30
D43V3, multiclass
          clus
vv         2P LOSS MUTATED 2P LOSS WILD-TYPE
  T1                     4                77
  T2+T3+T4               2                30
D43V4, binary
                   cls
clus                 0  1
  2P LOSS MUTATED    5  1
  2P LOSS WILD-TYPE 68 35
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      5    1
  2P LOSS WILD-TYPE   68   35
   clus
vv  2P LOSS MUTATED 2P LOSS WILD-TYPE
  0               5                68
  1               1                35
                   vv
clus                M0 M1 MX
  2P LOSS MUTATED    4  0  2
  2P LOSS WILD-TYPE 57  3 51
D43V5, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  M0               4                57
  M1               0                 3
  MX               2                51
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  2P LOSS MUTATED               0                                7
  2P LOSS WILD-TYPE             2                              117
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  2P LOSS MUTATED                                               0
  2P LOSS WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  2P LOSS MUTATED                                     0
  2P LOSS WILD-TYPE                                  16
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  2P LOSS MUTATED                                           0
  2P LOSS WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  2P LOSS MUTATED                                              1
  2P LOSS WILD-TYPE                                            2
D43V6, multiclass
D43V7, binary
                   cls
clus                  0   1
  2P LOSS MUTATED     2   6
  2P LOSS WILD-TYPE  23 119
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      2    6
  2P LOSS WILD-TYPE   23  119
     clus
vv    2P LOSS MUTATED 2P LOSS WILD-TYPE
  NO                2                23
  YES               6               119
D43V8, continuous
[1] "Remove cluster labels:" "2P LOSS MUTATED"       
clus
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                1                42 
       TCGA-BI-A0VR        TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BN        TCGA-C5-A1BQ        TCGA-C5-A1M7 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C5-A1MF        TCGA-C5-A1MI        TCGA-C5-A1MN        TCGA-C5-A2LS 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2M2        TCGA-C5-A3HD 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CJ        TCGA-C5-A7CK        TCGA-C5-A7CL 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-C5-A7UE        TCGA-DR-A0ZM        TCGA-DS-A5RQ        TCGA-DS-A7WF 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-EX-A1H5        TCGA-FU-A2QG        TCGA-FU-A3EO        TCGA-FU-A3HY 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-FU-A3TQ        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A5XV 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7        TCGA-IR-A3LB 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-JW-A5VI        TCGA-MU-A5YI        TCGA-Q1-A6DW 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
D43V9, continuous

Clustering(44) Variable = 2Q LOSS MUTATION ANALYSIS
D44V1, survival
                   sevent
clus2                 0   1
  2Q LOSS MUTATED    13   2
  2Q LOSS WILD-TYPE 102  26
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               15               128 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                2                26 
$`2Q LOSS MUTATED`
TCGA-BI-A0VS TCGA-C5-A1BI TCGA-C5-A1M8 TCGA-C5-A1MH TCGA-C5-A3HE TCGA-DS-A0VN 
       57.04        36.56        30.21        38.99        18.02       118.65 
TCGA-EA-A3HR TCGA-EA-A44S TCGA-EK-A2PG TCGA-EK-A2RN TCGA-EX-A69L TCGA-HM-A3JJ 
        1.32        12.66         0.53         0.10         4.47        21.67 
TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 
        4.34         3.72         3.45 

$`2Q LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BJ TCGA-C5-A1BK 
       49.48        11.44        68.84        18.74       144.16       177.04 
TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 TCGA-C5-A1M6 
      173.29        82.85         5.46        19.86        67.46        31.40 
TCGA-C5-A1M7 TCGA-C5-A1M9 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MK 
       46.32        35.01        53.16        35.61         2.73         2.43 
TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2LY 
       40.93         3.58        44.22        73.45        16.14        78.35 
TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HF TCGA-C5-A7CH TCGA-C5-A7CJ 
       38.43         0.82        52.01        17.85        25.35       101.82 
TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7UH 
      134.33        15.48         9.67        17.19        85.55        60.69 
TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM 
        9.34        87.75        58.88        36.76         2.66       117.99 
TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS 
       22.98        16.83        16.18         7.33         8.28         0.76 
TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 
        0.26         1.74         0.82         0.62         1.18        14.50 
TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 
       14.50         1.81        12.82         0.26         1.48        13.91 
TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2GZ 
        0.69        14.99        14.96         0.62         0.39        12.59 
TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD 
       45.96         6.64         0.59         0.07         4.04         0.03 
TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A2RO TCGA-EK-A3GJ 
        0.36         1.18        23.70         2.24         0.07         0.10 
TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 
        0.10         0.03        20.35         7.92         6.94        14.70 
TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY 
        6.12         1.22        23.84         0.92         2.17         0.66 
TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ 
        1.02         1.45         1.58         1.48         0.82         3.52 
TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JK TCGA-HM-A4S6 
        1.35         1.32         1.97        25.41        20.78        14.93 
TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF 
        4.11       147.39       137.16        66.81       117.40        96.95 
TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU 
       78.71        81.96        26.56        36.36        16.64         0.10 
TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE 
        0.89         0.07        13.87         0.03        29.72         0.07 
TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 
        5.85         3.39         3.72         5.75         6.25         3.88 
TCGA-UC-A7PD TCGA-UC-A7PF 
       11.67        93.99 

  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
             0.10              0.03 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
           118.65            177.04 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
            12.66             12.13 
[1] "0.1 - 118.7 (12.7)" "0.0 - 177.0 (12.1)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
  "2Q LOSS MUTATED"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
  "2Q LOSS MUTATED"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
  "2Q LOSS MUTATED"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D44V2, continuous
                   vv
clus                T1 T2+T3+T4
  2Q LOSS MUTATED    8        4
  2Q LOSS WILD-TYPE 73       28
D44V3, multiclass
          clus
vv         2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  T1                     8                73
  T2+T3+T4               4                28
D44V4, binary
                   cls
clus                 0  1
  2Q LOSS MUTATED    8  4
  2Q LOSS WILD-TYPE 65 32
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      8    4
  2Q LOSS WILD-TYPE   65   32
   clus
vv  2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  0               8                65
  1               4                32
                   vv
clus                M0 M1 MX
  2Q LOSS MUTATED    7  0  6
  2Q LOSS WILD-TYPE 54  3 47
D44V5, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  M0               7                54
  M1               0                 3
  MX               6                47
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  2Q LOSS MUTATED               0                               14
  2Q LOSS WILD-TYPE             2                              110
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  2Q LOSS MUTATED                                               0
  2Q LOSS WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  2Q LOSS MUTATED                                     0
  2Q LOSS WILD-TYPE                                  16
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  2Q LOSS MUTATED                                           0
  2Q LOSS WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  2Q LOSS MUTATED                                              1
  2Q LOSS WILD-TYPE                                            2
D44V6, multiclass
D44V7, binary
                   cls
clus                  0   1
  2Q LOSS MUTATED     5  10
  2Q LOSS WILD-TYPE  20 115
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      5   10
  2Q LOSS WILD-TYPE   20  115
     clus
vv    2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  NO                5                20
  YES              10               115
D44V8, continuous
[1] "Remove cluster labels:" "2Q LOSS MUTATED"       
clus
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                2                41 
       TCGA-BI-A0VR        TCGA-C5-A1BF        TCGA-C5-A1BJ        TCGA-C5-A1BL 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C5-A1BN        TCGA-C5-A1BQ        TCGA-C5-A1M7        TCGA-C5-A1MF 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C5-A1MI        TCGA-C5-A1MN        TCGA-C5-A2LS        TCGA-C5-A2LV 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C5-A2LX        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HF 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-C5-A7CJ        TCGA-C5-A7CK        TCGA-C5-A7CL        TCGA-C5-A7UE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-DR-A0ZM        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-EX-A1H5 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FU-A2QG        TCGA-FU-A3EO        TCGA-FU-A3HY        TCGA-FU-A3TQ 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A5XV        TCGA-HM-A4S6 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-HM-A6W2        TCGA-IR-A3L7        TCGA-IR-A3LB        TCGA-IR-A3LH 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-MU-A5YI        TCGA-Q1-A6DW        TCGA-RA-A741 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-UC-A7PD 
"2Q LOSS WILD-TYPE" 
D44V9, continuous

Clustering(45) Variable = 3P LOSS MUTATION ANALYSIS
D45V1, survival
                   sevent
clus2                0  1
  3P LOSS MUTATED   31  7
  3P LOSS WILD-TYPE 84 21
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               38               105 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
                7                21 
$`3P LOSS MUTATED`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BL TCGA-C5-A1BM 
       49.48        11.44        18.74        36.56       173.29        82.85 
TCGA-C5-A1BN TCGA-C5-A1MI TCGA-C5-A1MN TCGA-C5-A2LX TCGA-C5-A7CH TCGA-C5-A7UE 
        5.46        35.61        40.93        16.14        25.35        85.55 
TCGA-DR-A0ZL TCGA-DS-A0VK TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-EA-A3HS 
       87.75        36.76       117.99       118.65        16.83         0.82 
TCGA-EA-A3QE TCGA-EA-A44S TCGA-EA-A5ZE TCGA-EA-A6QX TCGA-EK-A2IP TCGA-EK-A2PG 
        1.18        12.66        14.99         0.62         6.64         0.53 
TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RE TCGA-EX-A1H5 TCGA-FU-A23L 
        0.59         0.07         4.04         0.36        20.35        23.84 
TCGA-FU-A3HY TCGA-FU-A3YQ TCGA-FU-A5XV TCGA-IR-A3L7 TCGA-JW-A5VI TCGA-MU-A5YI 
        0.66         3.52         1.97       147.39        16.64         0.03 
TCGA-Q1-A5R2 TCGA-RA-A741 
        3.45         3.88 

$`3P LOSS WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A1BE TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BQ TCGA-C5-A1M5 
       57.04        68.84       144.16       177.04        19.86        67.46 
TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF TCGA-C5-A1MH 
       31.40        46.32        30.21        35.01        53.16        38.99 
TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LY 
        2.73         2.43         3.58        44.22        73.45        78.35 
TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CJ 
       38.43         0.82        52.01        18.02        17.85       101.82 
TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UH TCGA-C5-A7X3 
      134.33        15.48         9.67        17.19        60.69         9.34 
TCGA-DR-A0ZM TCGA-DS-A0VL TCGA-DS-A3LQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI 
       58.88         2.66        22.98        16.18         7.33         8.28 
TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HT TCGA-EA-A3Y4 
        0.76         0.26         1.74         1.32         0.62        14.50 
TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 
       14.50         1.81        12.82         0.26         1.48        13.91 
TCGA-EA-A5ZD TCGA-EA-A5ZF TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2RD 
        0.69        14.96         0.39        12.59        45.96         0.03 
TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ 
        1.18        23.70         2.24         0.10         0.07         0.10 
TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L 
        0.10         0.03         7.92         6.94        14.70         4.47 
TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3NI 
        6.12         1.22         0.92         2.17         1.02         1.45 
TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A40J TCGA-FU-A57G TCGA-HG-A2PA 
        1.58         1.48         0.82         1.35         1.32        25.41 
TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3LA TCGA-IR-A3LB 
       21.67        20.78        14.93         4.11       137.16        66.81 
TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL 
      117.40        96.95        78.71        81.96        26.56        36.36 
TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MY-A5BD TCGA-MY-A5BE 
        0.10         0.89         0.07        13.87        29.72         0.07 
TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW 
        4.34         3.72         5.85         3.39         3.72         5.75 
TCGA-Q1-A73R TCGA-UC-A7PD TCGA-UC-A7PF 
        6.25        11.67        93.99 

  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             0.03              0.03 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
           173.29            177.04 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
           15.565             9.670 
[1] "0.0 - 173.3 (15.6)" "0.0 - 177.0 (9.7)" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D45V2, continuous
                   vv
clus                T1 T2+T3+T4
  3P LOSS MUTATED   20        8
  3P LOSS WILD-TYPE 61       24
D45V3, multiclass
          clus
vv         3P LOSS MUTATED 3P LOSS WILD-TYPE
  T1                    20                61
  T2+T3+T4               8                24
D45V4, binary
                   cls
clus                 0  1
  3P LOSS MUTATED   12 15
  3P LOSS WILD-TYPE 61 21
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     12   15
  3P LOSS WILD-TYPE   61   21
   clus
vv  3P LOSS MUTATED 3P LOSS WILD-TYPE
  0              12                61
  1              15                21
                   vv
clus                M0 M1 MX
  3P LOSS MUTATED   15  0 15
  3P LOSS WILD-TYPE 46  3 38
D45V5, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  M0              15                46
  M1               0                 3
  MX              15                38
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  3P LOSS MUTATED               0                               39
  3P LOSS WILD-TYPE             2                               85
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  3P LOSS MUTATED                                               0
  3P LOSS WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  3P LOSS MUTATED                                     0
  3P LOSS WILD-TYPE                                  16
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  3P LOSS MUTATED                                           0
  3P LOSS WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  3P LOSS MUTATED                                              0
  3P LOSS WILD-TYPE                                            3
D45V6, multiclass
D45V7, binary
                   cls
clus                 0  1
  3P LOSS MUTATED   11 28
  3P LOSS WILD-TYPE 14 97
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     11   28
  3P LOSS WILD-TYPE   14   97
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  NO               11                14
  YES              28                97
D45V8, continuous
D45V9, continuous

Clustering(46) Variable = 3Q LOSS MUTATION ANALYSIS
D46V1, survival
                   sevent
clus2                 0   1
  3Q LOSS MUTATED     4   0
  3Q LOSS WILD-TYPE 111  28
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                4               139 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                0                28 
$`3Q LOSS MUTATED`
TCGA-C5-A7CH TCGA-EK-A2PG TCGA-EK-A2RJ TCGA-MU-A5YI 
       25.35         0.53         1.18         0.03 

$`3Q LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ 
      144.16       177.04       173.29        82.85         5.46        19.86 
TCGA-C5-A1M5 TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF 
       67.46        31.40        46.32        30.21        35.01        53.16 
TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP 
       38.99        35.61         2.73         2.43        40.93         3.58 
TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 
       44.22        73.45        16.14        78.35        38.43         0.82 
TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL 
       52.01        18.02        17.85       101.82       134.33        15.48 
TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZL 
        9.67        17.19        85.55        60.69         9.34        87.75 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
       58.88        36.76         2.66       117.99       118.65        22.98 
TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A1QT 
       16.83        16.18         7.33         8.28         0.76         0.26 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 
        1.74         1.32         0.82         0.62         1.18        14.50 
TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO 
       14.50         1.81        12.66        12.82         0.26         1.48 
TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R 
       13.91         0.69        14.99        14.96         0.62         0.39 
TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC 
       12.59        45.96         6.64         0.59         0.07         4.04 
TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A2RN TCGA-EK-A2RO 
        0.03         0.36        23.70         2.24         0.10         0.07 
TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 
        0.10         0.10         0.03        20.35         7.92         6.94 
TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG 
       14.70         4.47         6.12         1.22        23.84         0.92 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX 
        2.17         0.66         1.02         1.45         1.58         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA 
        0.82         3.52         1.35         1.32         1.97        25.41 
TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA 
       21.67        20.78        14.93         4.11       147.39       137.16 
TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK 
       66.81       117.40        96.95        78.71        81.96        26.56 
TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y 
       36.36        16.64         0.10         0.89         0.07        13.87 
TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 
       29.72         0.07         4.34         3.72         3.45         5.85 
TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD 
        3.39         3.72         5.75         6.25         3.88        11.67 
TCGA-UC-A7PF 
       93.99 

  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
             0.03              0.03 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            25.35            177.04 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            0.855            12.660 
[1] "0.0 - 25.4 (0.9)"   "0.0 - 177.0 (12.7)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
[1] "hr="     "9100000"
D46V2, continuous
                   vv
clus                T1 T2+T3+T4
  3Q LOSS MUTATED    2        0
  3Q LOSS WILD-TYPE 79       32
D46V3, multiclass
[1] "Remove cluster labels:" "3Q LOSS MUTATED"       
clus
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                2               111 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A1BI        TCGA-C5-A1BK        TCGA-C5-A1BL        TCGA-C5-A1BM 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M7        TCGA-C5-A1M8        TCGA-C5-A1M9 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A1MF        TCGA-C5-A1MI        TCGA-C5-A1MJ        TCGA-C5-A1MP 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A3HE        TCGA-C5-A7CJ        TCGA-C5-A7UC 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DR-A0ZL        TCGA-DR-A0ZM        TCGA-DS-A0VK        TCGA-DS-A0VL 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DS-A0VM        TCGA-DS-A0VN        TCGA-DS-A3LQ        TCGA-DS-A5RQ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DS-A7WF        TCGA-DS-A7WH        TCGA-DS-A7WI        TCGA-EA-A1QS 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EA-A1QT        TCGA-EA-A3HQ        TCGA-EA-A3HR        TCGA-EA-A3HS 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EA-A3HT        TCGA-EA-A3QE        TCGA-EA-A3Y4        TCGA-EA-A439 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EA-A43B        TCGA-EA-A44S        TCGA-EA-A4BA        TCGA-EA-A50E 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EA-A5FO        TCGA-EA-A5O9        TCGA-EA-A5ZD        TCGA-EA-A5ZE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EA-A5ZF        TCGA-EA-A6QX        TCGA-EA-A78R        TCGA-EK-A2IP 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EK-A2R7        TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RK 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EK-A2RL        TCGA-EK-A2RN        TCGA-EK-A3GJ        TCGA-EK-A3GK 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EX-A1H5        TCGA-EX-A1H6        TCGA-EX-A3L1        TCGA-EX-A449 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EX-A69L        TCGA-EX-A69M        TCGA-FU-A23K        TCGA-FU-A23L 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FU-A2QG        TCGA-FU-A3EO        TCGA-FU-A3HY        TCGA-FU-A3HZ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FU-A3NI        TCGA-FU-A3TQ        TCGA-FU-A3TX        TCGA-FU-A3WB 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FU-A3YQ        TCGA-FU-A40J        TCGA-FU-A57G        TCGA-FU-A5XV 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HG-A2PA        TCGA-HM-A3JJ        TCGA-HM-A3JK        TCGA-HM-A4S6 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HM-A6W2        TCGA-IR-A3L7        TCGA-IR-A3LA        TCGA-IR-A3LB 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IR-A3LC        TCGA-IR-A3LF        TCGA-IR-A3LH        TCGA-IR-A3LI 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IR-A3LK        TCGA-IR-A3LL        TCGA-JW-A5VI        TCGA-LP-A4AU 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-LP-A4AV        TCGA-LP-A4AW        TCGA-LP-A4AX        TCGA-MU-A51Y 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MY-A5BD        TCGA-MY-A5BE        TCGA-MY-A5BF        TCGA-Q1-A5R1 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-Q1-A6DV        TCGA-UC-A7PD        TCGA-UC-A7PF 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
D46V4, binary
                   cls
clus                 0  1
  3Q LOSS MUTATED    1  0
  3Q LOSS WILD-TYPE 72 36
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      1    0
  3Q LOSS WILD-TYPE   72   36
   clus
vv  3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  0               1                72
  1               0                36
                   vv
clus                M0 M1 MX
  3Q LOSS MUTATED    0  0  2
  3Q LOSS WILD-TYPE 61  3 51
D46V5, multiclass
[1] "Remove cluster labels:" "3Q LOSS MUTATED"       
clus
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                2               115 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BK        TCGA-C5-A1BL 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A1BM        TCGA-C5-A1M5        TCGA-C5-A1M7        TCGA-C5-A1M8 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MI        TCGA-C5-A1MJ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A1MP        TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A2LY        TCGA-C5-A2M1        TCGA-C5-A3HE        TCGA-C5-A7CJ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A7UC        TCGA-DR-A0ZL        TCGA-DR-A0ZM        TCGA-DS-A0VK 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN        TCGA-DS-A3LQ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH        TCGA-DS-A7WI 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ        TCGA-EA-A3HR 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE        TCGA-EA-A3Y4 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S        TCGA-EA-A4BA 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9        TCGA-EA-A5ZD 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX        TCGA-EA-A78R 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EK-A2IP        TCGA-EK-A2R7        TCGA-EK-A2RD        TCGA-EK-A2RE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EK-A2RK        TCGA-EK-A2RL        TCGA-EK-A2RN        TCGA-EK-A3GK 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EX-A1H5        TCGA-EX-A1H6        TCGA-EX-A3L1        TCGA-EX-A449 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EX-A69L        TCGA-EX-A69M        TCGA-FU-A23K        TCGA-FU-A23L 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FU-A3EO        TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FU-A3TQ        TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FU-A40J        TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HM-A3JJ        TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IR-A3L7        TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IR-A3LF        TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IR-A3LL        TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AV 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-LP-A4AW        TCGA-LP-A4AX        TCGA-MU-A51Y        TCGA-MY-A5BD 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MY-A5BE        TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-Q1-A5R3        TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-Q1-A73R        TCGA-UC-A7PD        TCGA-UC-A7PF 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  3Q LOSS MUTATED               0                                5
  3Q LOSS WILD-TYPE             2                              119
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  3Q LOSS MUTATED                                               0
  3Q LOSS WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  3Q LOSS MUTATED                                     0
  3Q LOSS WILD-TYPE                                  16
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  3Q LOSS MUTATED                                           0
  3Q LOSS WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  3Q LOSS MUTATED                                              0
  3Q LOSS WILD-TYPE                                            3
D46V6, multiclass
D46V7, binary
                   cls
clus                  0   1
  3Q LOSS MUTATED     0   5
  3Q LOSS WILD-TYPE  25 120
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      0    5
  3Q LOSS WILD-TYPE   25  120
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  NO                0                25
  YES               5               120
D46V8, continuous
[1] "Remove cluster labels:" "3Q LOSS MUTATED"       
clus
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                1                42 
       TCGA-BI-A0VR        TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BN        TCGA-C5-A1BQ        TCGA-C5-A1M7 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI        TCGA-C5-A1MN 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2M2 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A3HD        TCGA-C5-A3HF        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7UE        TCGA-DR-A0ZM        TCGA-DS-A5RQ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DS-A7WF        TCGA-EX-A1H5        TCGA-FU-A2QG        TCGA-FU-A3EO 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3TQ        TCGA-FU-A3WB        TCGA-FU-A3YQ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FU-A5XV        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IR-A3LB        TCGA-IR-A3LH        TCGA-JW-A5VI        TCGA-Q1-A6DW 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
D46V9, continuous
[1] "Remove cluster labels:" "3Q LOSS MUTATED"       
clus
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
                1                92 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BK        TCGA-C5-A1BL        TCGA-C5-A1BM 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M7        TCGA-C5-A1M8        TCGA-C5-A1M9 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A1MF        TCGA-C5-A1MI        TCGA-C5-A1MJ        TCGA-C5-A1MP 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY        TCGA-C5-A2M1 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CJ        TCGA-C5-A7UC        TCGA-C5-A7UE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DR-A0ZL        TCGA-DR-A0ZM        TCGA-DS-A0VK        TCGA-DS-A0VL 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DS-A0VM        TCGA-DS-A0VN        TCGA-DS-A3LQ        TCGA-DS-A5RQ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-DS-A7WF        TCGA-DS-A7WH        TCGA-DS-A7WI        TCGA-EA-A1QS 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EA-A1QT        TCGA-EA-A3HQ        TCGA-EA-A3HR        TCGA-EA-A3HS 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EA-A3HT        TCGA-EA-A3Y4        TCGA-EA-A43B        TCGA-EA-A44S 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EA-A6QX        TCGA-EK-A2RO        TCGA-EK-A3GK        TCGA-EX-A1H5 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-EX-A1H6        TCGA-EX-A3L1        TCGA-EX-A69L        TCGA-EX-A69M 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-IR-A3L7        TCGA-IR-A3LA 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF        TCGA-IR-A3LH 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL        TCGA-LP-A4AX 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MY-A5BD        TCGA-MY-A5BF        TCGA-Q1-A5R1 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-Q1-A6DV        TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 

Clustering(47) Variable = 4P LOSS MUTATION ANALYSIS
D47V1, survival
                   sevent
clus2                0  1
  4P LOSS MUTATED   46 13
  4P LOSS WILD-TYPE 69 15
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               59                84 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               13                15 
$`4P LOSS MUTATED`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BI TCGA-C5-A1BJ TCGA-C5-A1BK 
       49.48        11.44        68.84        36.56       144.16       177.04 
TCGA-C5-A1BL TCGA-C5-A1BN TCGA-C5-A1M6 TCGA-C5-A1M9 TCGA-C5-A1MF TCGA-C5-A1MI 
      173.29         5.46        31.40        35.01        53.16        35.61 
TCGA-C5-A1MP TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A3HE TCGA-C5-A7CK TCGA-C5-A7CL 
        3.58        73.45        16.14        18.02       134.33        15.48 
TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DS-A0VK 
        9.67        17.19        60.69         9.34        87.75        36.76 
TCGA-DS-A0VL TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A3HS 
        2.66       118.65        16.83         0.26         1.32         0.82 
TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A78R TCGA-EK-A2GZ 
       14.50        14.50         1.81        12.66         0.39        12.59 
TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RD TCGA-EK-A2RJ TCGA-EK-A2RM TCGA-EK-A2RN 
        0.53         0.59         0.03         1.18         2.24         0.10 
TCGA-EK-A3GK TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A23L TCGA-FU-A3HY TCGA-FU-A3NI 
        0.10        20.35         6.94        23.84         0.66         1.45 
TCGA-FU-A5XV TCGA-HM-A3JJ TCGA-IR-A3LH TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX 
        1.97        21.67        78.71         0.10         0.89         0.07 
TCGA-MY-A5BF TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-UC-A7PD 
        4.34         3.45         5.85         3.39        11.67 

$`4P LOSS WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A1BF TCGA-C5-A1BM TCGA-C5-A1BQ TCGA-C5-A1M5 TCGA-C5-A1M7 
       57.04        18.74        82.85        19.86        67.46        46.32 
TCGA-C5-A1M8 TCGA-C5-A1MH TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LS 
       30.21        38.99         2.73         2.43        40.93        44.22 
TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HF TCGA-C5-A7CH 
       78.35        38.43         0.82        52.01        17.85        25.35 
TCGA-C5-A7CJ TCGA-C5-A7UE TCGA-DR-A0ZM TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-DS-A7WF 
      101.82        85.55        58.88       117.99        22.98        16.18 
TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A3HQ TCGA-EA-A3HT TCGA-EA-A3QE 
        7.33         8.28         0.76         1.74         0.62         1.18 
TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE 
       12.82         0.26         1.48        13.91         0.69        14.99 
TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2RB TCGA-EK-A2RC 
       14.96         0.62        45.96         6.64         0.07         4.04 
TCGA-EK-A2RE TCGA-EK-A2RL TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GN TCGA-EX-A1H6 
        0.36        23.70         0.07         0.10         0.03         7.92 
TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO 
       14.70         4.47         6.12         1.22         0.92         2.17 
TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J 
        1.02         1.58         1.48         0.82         3.52         1.35 
TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 
        1.32        25.41        20.78        14.93         4.11       147.39 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LI TCGA-IR-A3LK 
      137.16        66.81       117.40        96.95        81.96        26.56 
TCGA-IR-A3LL TCGA-JW-A5VI TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE 
       36.36        16.64        13.87         0.03        29.72         0.07 
TCGA-Q1-A5R1 TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PF 
        3.72         3.72         5.75         6.25         3.88        93.99 

  4P LOSS MUTATED 4P LOSS WILD-TYPE 
             0.03              0.03 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
           177.04            147.39 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
           11.670            13.345 
[1] "0.0 - 177.0 (11.7)" "0.0 - 147.4 (13.3)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D47V2, continuous
                   vv
clus                T1 T2+T3+T4
  4P LOSS MUTATED   33       13
  4P LOSS WILD-TYPE 48       19
D47V3, multiclass
          clus
vv         4P LOSS MUTATED 4P LOSS WILD-TYPE
  T1                    33                48
  T2+T3+T4              13                19
D47V4, binary
                   cls
clus                 0  1
  4P LOSS MUTATED   25 20
  4P LOSS WILD-TYPE 48 16
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     25   20
  4P LOSS WILD-TYPE   48   16
   clus
vv  4P LOSS MUTATED 4P LOSS WILD-TYPE
  0              25                48
  1              20                16
                   vv
clus                M0 M1 MX
  4P LOSS MUTATED   26  0 23
  4P LOSS WILD-TYPE 35  3 30
D47V5, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  M0              26                35
  M1               0                 3
  MX              23                30
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  4P LOSS MUTATED               0                               59
  4P LOSS WILD-TYPE             2                               65
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  4P LOSS MUTATED                                               1
  4P LOSS WILD-TYPE                                             3
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  4P LOSS MUTATED                                     2
  4P LOSS WILD-TYPE                                  14
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  4P LOSS MUTATED                                           0
  4P LOSS WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  4P LOSS MUTATED                                              0
  4P LOSS WILD-TYPE                                            3
D47V6, multiclass
D47V7, binary
                   cls
clus                 0  1
  4P LOSS MUTATED   14 48
  4P LOSS WILD-TYPE 11 77
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     14   48
  4P LOSS WILD-TYPE   11   77
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  NO               14                11
  YES              48                77
D47V8, continuous
D47V9, continuous

Clustering(48) Variable = 4Q LOSS MUTATION ANALYSIS
D48V1, survival
                   sevent
clus2                0  1
  4Q LOSS MUTATED   26 10
  4Q LOSS WILD-TYPE 89 18
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               36               107 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               10                18 
$`4Q LOSS MUTATED`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BN TCGA-C5-A1M6 TCGA-C5-A1M9 TCGA-C5-A1MI 
       49.48        11.44         5.46        31.40        35.01        35.61 
TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A3HE TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC 
       73.45        16.14        18.02        15.48         9.67        17.19 
TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A439 
       60.69         9.34        87.75         0.76         0.26        14.50 
TCGA-EA-A43B TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2PG TCGA-EK-A2R7 
        1.81         0.39        12.59        45.96         0.53         0.59 
TCGA-EK-A2RJ TCGA-EK-A2RM TCGA-EK-A2RN TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A3NI 
        1.18         2.24         0.10        20.35         6.94         1.45 
TCGA-FU-A5XV TCGA-HM-A3JJ TCGA-LP-A4AU TCGA-MY-A5BF TCGA-Q1-A5R2 TCGA-UC-A7PD 
        1.97        21.67         0.10         4.34         3.45        11.67 

$`4Q LOSS WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BJ TCGA-C5-A1BK 
       57.04        68.84        18.74        36.56       144.16       177.04 
TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BQ TCGA-C5-A1M5 TCGA-C5-A1M7 TCGA-C5-A1M8 
      173.29        82.85        19.86        67.46        46.32        30.21 
TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP 
       53.16        38.99         2.73         2.43        40.93         3.58 
TCGA-C5-A2LS TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HF 
       44.22        78.35        38.43         0.82        52.01        17.85 
TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7UE TCGA-DR-A0ZM TCGA-DS-A0VK 
       25.35       101.82       134.33        85.55        58.88        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF 
        2.66       117.99       118.65        22.98        16.83        16.18 
TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
        7.33         8.28         1.74         1.32         0.82         0.62 
TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO 
        1.18        14.50        12.66        12.82         0.26         1.48 
TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EK-A2IP 
       13.91         0.69        14.99        14.96         0.62         6.64 
TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RL TCGA-EK-A2RO 
        0.07         4.04         0.03         0.36        23.70         0.07 
TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H6 TCGA-EX-A449 TCGA-EX-A69L 
        0.10         0.10         0.03         7.92        14.70         4.47 
TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY 
        6.12         1.22        23.84         0.92         2.17         0.66 
TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J 
        1.02         1.58         1.48         0.82         3.52         1.35 
TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 
        1.32        25.41        20.78        14.93         4.11       147.39 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI 
      137.16        66.81       117.40        96.95        78.71        81.96 
TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y 
       26.56        36.36        16.64         0.89         0.07        13.87 
TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-Q1-A5R1 TCGA-Q1-A5R3 TCGA-Q1-A6DT 
        0.03        29.72         0.07         3.72         5.85         3.39 
TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PF 
        3.72         5.75         6.25         3.88        93.99 

  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
             0.10              0.03 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
            87.75            177.04 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
           10.555            13.870 
[1] "0.1 - 87.8 (10.6)"  "0.0 - 177.0 (13.9)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
[1] "hr=" "2.7"
D48V2, continuous
                   vv
clus                T1 T2+T3+T4
  4Q LOSS MUTATED   17        9
  4Q LOSS WILD-TYPE 64       23
D48V3, multiclass
          clus
vv         4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  T1                    17                64
  T2+T3+T4               9                23
D48V4, binary
                   cls
clus                 0  1
  4Q LOSS MUTATED   12 13
  4Q LOSS WILD-TYPE 61 23
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     12   13
  4Q LOSS WILD-TYPE   61   23
   clus
vv  4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  0              12                61
  1              13                23
                   vv
clus                M0 M1 MX
  4Q LOSS MUTATED   15  0 12
  4Q LOSS WILD-TYPE 46  3 41
D48V5, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  M0              15                46
  M1               0                 3
  MX              12                41
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  4Q LOSS MUTATED               0                               37
  4Q LOSS WILD-TYPE             2                               87
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  4Q LOSS MUTATED                                               1
  4Q LOSS WILD-TYPE                                             3
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  4Q LOSS MUTATED                                     2
  4Q LOSS WILD-TYPE                                  14
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  4Q LOSS MUTATED                                           0
  4Q LOSS WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  4Q LOSS MUTATED                                              0
  4Q LOSS WILD-TYPE                                            3
D48V6, multiclass
D48V7, binary
                   cls
clus                 0  1
  4Q LOSS MUTATED    8 32
  4Q LOSS WILD-TYPE 17 93
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED      8   32
  4Q LOSS WILD-TYPE   17   93
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  NO                8                17
  YES              32                93
D48V8, continuous
D48V9, continuous

Clustering(49) Variable = 5P LOSS MUTATION ANALYSIS
D49V1, survival
                   sevent
clus2                 0   1
  5P LOSS MUTATED     4   7
  5P LOSS WILD-TYPE 111  21
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               11               132 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                7                21 
$`5P LOSS MUTATED`
TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1M9 TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A7CH 
       11.44        68.84        35.01        38.99        35.61        25.35 
TCGA-C5-A7UC TCGA-DS-A0VK TCGA-EK-A2RM TCGA-FU-A3HY TCGA-LP-A4AW 
       17.19        36.76         2.24         0.66         0.89 

$`5P LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BJ TCGA-C5-A1BK 
       49.48        57.04        18.74        36.56       144.16       177.04 
TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 TCGA-C5-A1M6 
      173.29        82.85         5.46        19.86        67.46        31.40 
TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1MF TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN 
       46.32        30.21        53.16         2.73         2.43        40.93 
TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 
        3.58        44.22        73.45        16.14        78.35        38.43 
TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CJ TCGA-C5-A7CK 
        0.82        52.01        18.02        17.85       101.82       134.33 
TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UE TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZL 
       15.48         9.67        85.55        60.69         9.34        87.75 
TCGA-DR-A0ZM TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ 
       58.88         2.66       117.99       118.65        22.98        16.83 
TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ 
       16.18         7.33         8.28         0.76         0.26         1.74 
TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A439 
        1.32         0.82         0.62         1.18        14.50        14.50 
TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 
        1.81        12.66        12.82         0.26         1.48        13.91 
TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2GZ 
        0.69        14.99        14.96         0.62         0.39        12.59 
TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC 
       45.96         6.64         0.53         0.59         0.07         4.04 
TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RN TCGA-EK-A2RO 
        0.03         0.36         1.18        23.70         0.10         0.07 
TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 
        0.10         0.10         0.03        20.35         7.92         6.94 
TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG 
       14.70         4.47         6.12         1.22        23.84         0.92 
TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB 
        2.17         1.02         1.45         1.58         1.48         0.82 
TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ 
        3.52         1.35         1.32         1.97        25.41        21.67 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB 
       20.78        14.93         4.11       147.39       137.16        66.81 
TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL 
      117.40        96.95        78.71        81.96        26.56        36.36 
TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD 
       16.64         0.10         0.07        13.87         0.03        29.72 
TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DT 
        0.07         4.34         3.72         3.45         5.85         3.39 
TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        3.72         5.75         6.25         3.88        11.67        93.99 

  5P LOSS MUTATED 5P LOSS WILD-TYPE 
             0.66              0.03 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
            68.84            177.04 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
            25.35             10.67 
[1] "0.7 - 68.8 (25.4)"  "0.0 - 177.0 (10.7)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
[1] "hr=" "3.8"
D49V2, continuous
                   vv
clus                T1 T2+T3+T4
  5P LOSS MUTATED    8        1
  5P LOSS WILD-TYPE 73       31
D49V3, multiclass
          clus
vv         5P LOSS MUTATED 5P LOSS WILD-TYPE
  T1                     8                73
  T2+T3+T4               1                31
D49V4, binary
                   cls
clus                 0  1
  5P LOSS MUTATED    3  6
  5P LOSS WILD-TYPE 70 30
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      3    6
  5P LOSS WILD-TYPE   70   30
   clus
vv  5P LOSS MUTATED 5P LOSS WILD-TYPE
  0               3                70
  1               6                30
                   vv
clus                M0 M1 MX
  5P LOSS MUTATED    5  0  4
  5P LOSS WILD-TYPE 56  3 49
D49V5, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  M0               5                56
  M1               0                 3
  MX               4                49
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  5P LOSS MUTATED               0                               11
  5P LOSS WILD-TYPE             2                              113
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  5P LOSS MUTATED                                               0
  5P LOSS WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  5P LOSS MUTATED                                     1
  5P LOSS WILD-TYPE                                  15
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  5P LOSS MUTATED                                           0
  5P LOSS WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  5P LOSS MUTATED                                              0
  5P LOSS WILD-TYPE                                            3
D49V6, multiclass
D49V7, binary
                   cls
clus                  0   1
  5P LOSS MUTATED     5   7
  5P LOSS WILD-TYPE  20 118
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      5    7
  5P LOSS WILD-TYPE   20  118
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  NO                5                20
  YES               7               118
D49V8, continuous
D49V9, continuous

Clustering(50) Variable = 5Q LOSS MUTATION ANALYSIS
D50V1, survival
                   sevent
clus2                0  1
  5Q LOSS MUTATED   21  9
  5Q LOSS WILD-TYPE 94 19
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               30               113 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
                9                19 
$`5Q LOSS MUTATED`
TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BJ TCGA-C5-A1BN TCGA-C5-A1M9 TCGA-C5-A1MH 
       11.44        68.84       144.16         5.46        35.01        38.99 
TCGA-C5-A1MI TCGA-C5-A3HE TCGA-C5-A7CH TCGA-C5-A7UC TCGA-C5-A7UE TCGA-DR-A0ZL 
       35.61        18.02        25.35        17.19        85.55        87.75 
TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A439 
       36.76         2.66       117.99         0.26         1.32        14.50 
TCGA-EA-A5ZF TCGA-EK-A2IP TCGA-EK-A2RJ TCGA-EK-A2RM TCGA-EK-A3GK TCGA-FU-A23L 
       14.96         6.64         1.18         2.24         0.10        23.84 
TCGA-FU-A2QG TCGA-FU-A3HY TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-JW-A5VI TCGA-LP-A4AW 
        0.92         0.66        25.41        21.67        16.64         0.89 

$`5Q LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BL 
       49.48        57.04        18.74        36.56       177.04       173.29 
TCGA-C5-A1BM TCGA-C5-A1BQ TCGA-C5-A1M5 TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 
       82.85        19.86        67.46        31.40        46.32        30.21 
TCGA-C5-A1MF TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS 
       53.16         2.73         2.43        40.93         3.58        44.22 
TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD 
       73.45        16.14        78.35        38.43         0.82        52.01 
TCGA-C5-A3HF TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UH 
       17.85       101.82       134.33        15.48         9.67        60.69 
TCGA-C5-A7X3 TCGA-DR-A0ZM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF 
        9.34        58.88       118.65        22.98        16.83        16.18 
TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT 
        7.33         8.28         0.76         1.74         0.82         0.62 
TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E 
        1.18        14.50         1.81        12.66        12.82         0.26 
TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A6QX TCGA-EA-A78R 
        1.48        13.91         0.69        14.99         0.62         0.39 
TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC 
       12.59        45.96         0.53         0.59         0.07         4.04 
TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RL TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ 
        0.03         0.36        23.70         0.10         0.07         0.10 
TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L 
        0.03        20.35         7.92         6.94        14.70         4.47 
TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ 
        6.12         1.22         2.17         1.02         1.45         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV 
        1.48         0.82         3.52         1.35         1.32         1.97 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB 
       20.78        14.93         4.11       147.39       137.16        66.81 
TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL 
      117.40        96.95        78.71        81.96        26.56        36.36 
TCGA-LP-A4AU TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE 
        0.10         0.07        13.87         0.03        29.72         0.07 
TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DV 
        4.34         3.72         3.45         5.85         3.39         3.72 
TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        5.75         6.25         3.88        11.67        93.99 

  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
             0.10              0.03 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
           144.16            177.04 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
           16.915             9.340 
[1] "0.1 - 144.2 (16.9)" "0.0 - 177.0 (9.3)" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D50V2, continuous
                   vv
clus                T1 T2+T3+T4
  5Q LOSS MUTATED   20        5
  5Q LOSS WILD-TYPE 61       27
D50V3, multiclass
          clus
vv         5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  T1                    20                61
  T2+T3+T4               5                27
D50V4, binary
                   cls
clus                 0  1
  5Q LOSS MUTATED   15  8
  5Q LOSS WILD-TYPE 58 28
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     15    8
  5Q LOSS WILD-TYPE   58   28
   clus
vv  5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  0              15                58
  1               8                28
                   vv
clus                M0 M1 MX
  5Q LOSS MUTATED   14  0 10
  5Q LOSS WILD-TYPE 47  3 43
D50V5, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  M0              14                47
  M1               0                 3
  MX              10                43
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  5Q LOSS MUTATED               0                               30
  5Q LOSS WILD-TYPE             2                               94
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  5Q LOSS MUTATED                                               0
  5Q LOSS WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  5Q LOSS MUTATED                                     2
  5Q LOSS WILD-TYPE                                  14
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  5Q LOSS MUTATED                                           0
  5Q LOSS WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  5Q LOSS MUTATED                                              0
  5Q LOSS WILD-TYPE                                            3
D50V6, multiclass
D50V7, binary
                   cls
clus                  0   1
  5Q LOSS MUTATED     8  24
  5Q LOSS WILD-TYPE  17 101
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED      8   24
  5Q LOSS WILD-TYPE   17  101
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  NO                8                17
  YES              24               101
D50V8, continuous
D50V9, continuous

Clustering(51) Variable = 6P LOSS MUTATION ANALYSIS
D51V1, survival
                   sevent
clus2                 0   1
  6P LOSS MUTATED    15   3
  6P LOSS WILD-TYPE 100  25
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               18               125 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
                3                25 
$`6P LOSS MUTATED`
TCGA-C5-A1BQ TCGA-C5-A1M8 TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DS-A0VK TCGA-EA-A3QE 
       19.86        30.21        60.69         9.34        36.76         1.18 
TCGA-EA-A44S TCGA-EA-A6QX TCGA-EK-A2GZ TCGA-EK-A2PG TCGA-EK-A2RC TCGA-EK-A2RM 
       12.66         0.62        12.59         0.53         4.04         2.24 
TCGA-EK-A2RN TCGA-EK-A3GJ TCGA-EX-A1H6 TCGA-FU-A3HY TCGA-IR-A3L7 TCGA-Q1-A6DT 
        0.10         0.10         7.92         0.66       147.39         3.39 

$`6P LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1M5 
      144.16       177.04       173.29        82.85         5.46        67.46 
TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M9 TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MI 
       31.40        46.32        35.01        53.16        38.99        35.61 
TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV 
        2.73         2.43        40.93         3.58        44.22        73.45 
TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE 
       16.14        78.35        38.43         0.82        52.01        18.02 
TCGA-C5-A3HF TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM 
       17.85        25.35       101.82       134.33        15.48         9.67 
TCGA-C5-A7UC TCGA-C5-A7UE TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VL TCGA-DS-A0VM 
       17.19        85.55        87.75        58.88         2.66       117.99 
TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI 
      118.65        22.98        16.83        16.18         7.33         8.28 
TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
        0.76         0.26         1.74         1.32         0.82         0.62 
TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO 
       14.50        14.50         1.81        12.82         0.26         1.48 
TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A78R TCGA-EK-A2H0 
       13.91         0.69        14.99        14.96         0.39        45.96 
TCGA-EK-A2IP TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RJ 
        6.64         0.59         0.07         0.03         0.36         1.18 
TCGA-EK-A2RL TCGA-EK-A2RO TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A3L1 
       23.70         0.07         0.10         0.03        20.35         6.94 
TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG 
       14.70         4.47         6.12         1.22        23.84         0.92 
TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB 
        2.17         1.02         1.45         1.58         1.48         0.82 
TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ 
        3.52         1.35         1.32         1.97        25.41        21.67 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC 
       20.78        14.93         4.11       137.16        66.81       117.40 
TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI 
       96.95        78.71        81.96        26.56        36.36        16.64 
TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD 
        0.10         0.89         0.07        13.87         0.03        29.72 
TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DV 
        0.07         4.34         3.72         3.45         5.85         3.72 
TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        5.75         6.25         3.88        11.67        93.99 

  6P LOSS MUTATED 6P LOSS WILD-TYPE 
             0.10              0.03 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
           147.39            177.04 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
             5.98             13.91 
[1] "0.1 - 147.4 (6.0)"  "0.0 - 177.0 (13.9)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D51V2, continuous
                   vv
clus                T1 T2+T3+T4
  6P LOSS MUTATED    8        2
  6P LOSS WILD-TYPE 73       30
D51V3, multiclass
          clus
vv         6P LOSS MUTATED 6P LOSS WILD-TYPE
  T1                     8                73
  T2+T3+T4               2                30
D51V4, binary
                   cls
clus                 0  1
  6P LOSS MUTATED    5  5
  6P LOSS WILD-TYPE 68 31
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      5    5
  6P LOSS WILD-TYPE   68   31
   clus
vv  6P LOSS MUTATED 6P LOSS WILD-TYPE
  0               5                68
  1               5                31
                   vv
clus                M0 M1 MX
  6P LOSS MUTATED    5  0  5
  6P LOSS WILD-TYPE 56  3 48
D51V5, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  M0               5                56
  M1               0                 3
  MX               5                48
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  6P LOSS MUTATED               0                               18
  6P LOSS WILD-TYPE             2                              106
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  6P LOSS MUTATED                                               0
  6P LOSS WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  6P LOSS MUTATED                                     1
  6P LOSS WILD-TYPE                                  15
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  6P LOSS MUTATED                                           0
  6P LOSS WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  6P LOSS MUTATED                                              0
  6P LOSS WILD-TYPE                                            3
D51V6, multiclass
D51V7, binary
                   cls
clus                  0   1
  6P LOSS MUTATED     1  18
  6P LOSS WILD-TYPE  24 107
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      1   18
  6P LOSS WILD-TYPE   24  107
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  NO                1                24
  YES              18               107
D51V8, continuous
D51V9, continuous

Clustering(52) Variable = 6Q LOSS MUTATION ANALYSIS
D52V1, survival
                   sevent
clus2                0  1
  6Q LOSS MUTATED   30  2
  6Q LOSS WILD-TYPE 85 26
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               32               111 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
                2                26 
$`6Q LOSS MUTATED`
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1M8 TCGA-C5-A2LV 
       49.48        36.56       173.29        82.85        30.21        73.45 
TCGA-C5-A7CH TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-EA-A1QT TCGA-EA-A3QE TCGA-EA-A44S 
       25.35        60.69         9.34         0.26         1.18        12.66 
TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EK-A2GZ TCGA-EK-A2PG TCGA-EK-A2RB TCGA-EK-A2RC 
       14.96         0.62        12.59         0.53         0.07         4.04 
TCGA-EK-A2RM TCGA-EK-A2RN TCGA-EK-A3GJ TCGA-EX-A1H6 TCGA-FU-A23L TCGA-FU-A3HY 
        2.24         0.10         0.10         7.92        23.84         0.66 
TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-IR-A3L7 TCGA-LP-A4AX TCGA-MU-A5YI 
        3.52         1.35         1.32       147.39         0.07         0.03 
TCGA-Q1-A5R2 TCGA-Q1-A6DT 
        3.45         3.39 

$`6Q LOSS WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BJ TCGA-C5-A1BK 
       57.04        11.44        68.84        18.74       144.16       177.04 
TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M9 
        5.46        19.86        67.46        31.40        46.32        35.01 
TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN 
       53.16        38.99        35.61         2.73         2.43        40.93 
TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 
        3.58        44.22        16.14        78.35        38.43         0.82 
TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL 
       52.01        18.02        17.85       101.82       134.33        15.48 
TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
        9.67        17.19        85.55        87.75        58.88        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF 
        2.66       117.99       118.65        22.98        16.83        16.18 
TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS 
        7.33         8.28         0.76         1.74         1.32         0.82 
TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A4BA TCGA-EA-A50E 
        0.62        14.50        14.50         1.81        12.82         0.26 
TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A78R TCGA-EK-A2H0 
        1.48        13.91         0.69        14.99         0.39        45.96 
TCGA-EK-A2IP TCGA-EK-A2R7 TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL 
        6.64         0.59         0.03         0.36         1.18        23.70 
TCGA-EK-A2RO TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-EX-A449 
        0.07         0.10         0.03        20.35         6.94        14.70 
TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HZ 
        4.47         6.12         1.22         0.92         2.17         1.02 
TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A5XV TCGA-HG-A2PA 
        1.45         1.58         1.48         0.82         1.97        25.41 
TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3LA TCGA-IR-A3LB 
       21.67        20.78        14.93         4.11       137.16        66.81 
TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL 
      117.40        96.95        78.71        81.96        26.56        36.36 
TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-MU-A51Y TCGA-MY-A5BD TCGA-MY-A5BE 
       16.64         0.10         0.89        13.87        29.72         0.07 
TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R3 TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R 
        4.34         3.72         5.85         3.72         5.75         6.25 
TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        3.88        11.67        93.99 

  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
             0.03              0.03 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
           173.29            177.04 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
             3.78             14.50 
[1] "0.0 - 173.3 (3.8)"  "0.0 - 177.0 (14.5)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
[1] "hr=" "3.1"
D52V2, continuous
                   vv
clus                T1 T2+T3+T4
  6Q LOSS MUTATED   16        6
  6Q LOSS WILD-TYPE 65       26
D52V3, multiclass
          clus
vv         6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  T1                    16                65
  T2+T3+T4               6                26
D52V4, binary
                   cls
clus                 0  1
  6Q LOSS MUTATED   10 10
  6Q LOSS WILD-TYPE 63 26
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED     10   10
  6Q LOSS WILD-TYPE   63   26
   clus
vv  6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  0              10                63
  1              10                26
                   vv
clus                M0 M1 MX
  6Q LOSS MUTATED   10  0 13
  6Q LOSS WILD-TYPE 51  3 40
D52V5, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  M0              10                51
  M1               0                 3
  MX              13                40
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  6Q LOSS MUTATED               0                               31
  6Q LOSS WILD-TYPE             2                               93
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  6Q LOSS MUTATED                                               0
  6Q LOSS WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  6Q LOSS MUTATED                                     4
  6Q LOSS WILD-TYPE                                  12
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  6Q LOSS MUTATED                                           0
  6Q LOSS WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  6Q LOSS MUTATED                                              0
  6Q LOSS WILD-TYPE                                            3
D52V6, multiclass
D52V7, binary
                   cls
clus                 0  1
  6Q LOSS MUTATED    4 31
  6Q LOSS WILD-TYPE 21 94
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      4   31
  6Q LOSS WILD-TYPE   21   94
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  NO                4                21
  YES              31                94
D52V8, continuous
D52V9, continuous

Clustering(53) Variable = 7P LOSS MUTATION ANALYSIS
D53V1, survival
                   sevent
clus2                 0   1
  7P LOSS MUTATED    10   6
  7P LOSS WILD-TYPE 105  22
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               16               127 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                6                22 
$`7P LOSS MUTATED`
TCGA-C5-A0TN TCGA-C5-A1M6 TCGA-C5-A1M9 TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MI 
       11.44        31.40        35.01        53.16        38.99        35.61 
TCGA-C5-A2LX TCGA-C5-A7CK TCGA-DR-A0ZL TCGA-DS-A7WH TCGA-EA-A1QS TCGA-EA-A439 
       16.14       134.33        87.75         7.33         0.76        14.50 
TCGA-EA-A5ZF TCGA-EK-A2RM TCGA-EX-A1H5 TCGA-RA-A741 
       14.96         2.24        20.35         3.88 

$`7P LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BJ 
       49.48        57.04        68.84        18.74        36.56       144.16 
TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 
      177.04       173.29        82.85         5.46        19.86        67.46 
TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP 
       46.32        30.21         2.73         2.43        40.93         3.58 
TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD 
       44.22        73.45        78.35        38.43         0.82        52.01 
TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CL TCGA-C5-A7CM 
       18.02        17.85        25.35       101.82        15.48         9.67 
TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZM TCGA-DS-A0VK 
       17.19        85.55        60.69         9.34        58.88        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF 
        2.66       117.99       118.65        22.98        16.83        16.18 
TCGA-DS-A7WI TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
        8.28         0.26         1.74         1.32         0.82         0.62 
TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E 
        1.18        14.50         1.81        12.66        12.82         0.26 
TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A6QX TCGA-EA-A78R 
        1.48        13.91         0.69        14.99         0.62         0.39 
TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB 
       12.59        45.96         6.64         0.53         0.59         0.07 
TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RN 
        4.04         0.03         0.36         1.18        23.70         0.10 
TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H6 TCGA-EX-A3L1 
        0.07         0.10         0.10         0.03         7.92         6.94 
TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG 
       14.70         4.47         6.12         1.22        23.84         0.92 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX 
        2.17         0.66         1.02         1.45         1.58         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA 
        0.82         3.52         1.35         1.32         1.97        25.41 
TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA 
       21.67        20.78        14.93         4.11       147.39       137.16 
TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK 
       66.81       117.40        96.95        78.71        81.96        26.56 
TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y 
       36.36        16.64         0.10         0.89         0.07        13.87 
TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 
        0.03        29.72         0.07         4.34         3.72         3.45 
TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-UC-A7PD 
        5.85         3.39         3.72         5.75         6.25        11.67 
TCGA-UC-A7PF 
       93.99 

  7P LOSS MUTATED 7P LOSS WILD-TYPE 
             0.76              0.03 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
           134.33            177.04 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
           18.245             9.340 
[1] "0.8 - 134.3 (18.2)" "0.0 - 177.0 (9.3)" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "7P LOSS MUTATED"   "7P LOSS MUTATED"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "7P LOSS MUTATED"   "7P LOSS MUTATED"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "7P LOSS MUTATED"   "7P LOSS MUTATED"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D53V2, continuous
                   vv
clus                T1 T2+T3+T4
  7P LOSS MUTATED    7        4
  7P LOSS WILD-TYPE 74       28
D53V3, multiclass
          clus
vv         7P LOSS MUTATED 7P LOSS WILD-TYPE
  T1                     7                74
  T2+T3+T4               4                28
D53V4, binary
                   cls
clus                 0  1
  7P LOSS MUTATED    5  5
  7P LOSS WILD-TYPE 68 31
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      5    5
  7P LOSS WILD-TYPE   68   31
   clus
vv  7P LOSS MUTATED 7P LOSS WILD-TYPE
  0               5                68
  1               5                31
                   vv
clus                M0 M1 MX
  7P LOSS MUTATED    6  0  5
  7P LOSS WILD-TYPE 55  3 48
D53V5, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  M0               6                55
  M1               0                 3
  MX               5                48
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  7P LOSS MUTATED               0                               14
  7P LOSS WILD-TYPE             2                              110
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  7P LOSS MUTATED                                               0
  7P LOSS WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  7P LOSS MUTATED                                     2
  7P LOSS WILD-TYPE                                  14
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  7P LOSS MUTATED                                           0
  7P LOSS WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  7P LOSS MUTATED                                              0
  7P LOSS WILD-TYPE                                            3
D53V6, multiclass
D53V7, binary
                   cls
clus                  0   1
  7P LOSS MUTATED     8   8
  7P LOSS WILD-TYPE  17 117
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      8    8
  7P LOSS WILD-TYPE   17  117
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  NO                8                17
  YES               8               117
D53V8, continuous
D53V9, continuous

Clustering(54) Variable = 7Q LOSS MUTATION ANALYSIS
D54V1, survival
                   sevent
clus2                0  1
  7Q LOSS MUTATED   16  9
  7Q LOSS WILD-TYPE 99 19
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               25               118 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                9                19 
$`7Q LOSS MUTATED`
TCGA-C5-A0TN TCGA-C5-A1BN TCGA-C5-A1M6 TCGA-C5-A1M9 TCGA-C5-A1MH TCGA-C5-A1MI 
       11.44         5.46        31.40        35.01        38.99        35.61 
TCGA-C5-A1MN TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A7CH TCGA-C5-A7CL TCGA-DS-A7WH 
       40.93        73.45        16.14        25.35        15.48         7.33 
TCGA-EA-A1QS TCGA-EA-A439 TCGA-EA-A5ZF TCGA-EK-A2H0 TCGA-EK-A2RE TCGA-EK-A2RM 
        0.76        14.50        14.96        45.96         0.36         2.24 
TCGA-EK-A3GK TCGA-EX-A1H5 TCGA-FU-A2QG TCGA-FU-A40J TCGA-HM-A3JJ TCGA-MY-A5BF 
        0.10        20.35         0.92         1.35        21.67         4.34 
TCGA-RA-A741 
        3.88 

$`7Q LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BJ 
       49.48        57.04        68.84        18.74        36.56       144.16 
TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BQ TCGA-C5-A1M5 TCGA-C5-A1M7 
      177.04       173.29        82.85        19.86        67.46        46.32 
TCGA-C5-A1M8 TCGA-C5-A1MF TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MP TCGA-C5-A2LS 
       30.21        53.16         2.73         2.43         3.58        44.22 
TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF 
       78.35        38.43         0.82        52.01        18.02        17.85 
TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7UH 
      101.82       134.33         9.67        17.19        85.55        60.69 
TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM 
        9.34        87.75        58.88        36.76         2.66       117.99 
TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WI TCGA-EA-A1QT 
      118.65        22.98        16.83        16.18         8.28         0.26 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 
        1.74         1.32         0.82         0.62         1.18        14.50 
TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 
        1.81        12.66        12.82         0.26         1.48        13.91 
TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2IP 
        0.69        14.99         0.62         0.39        12.59         6.64 
TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RJ 
        0.53         0.59         0.07         4.04         0.03         1.18 
TCGA-EK-A2RL TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GN TCGA-EX-A1H6 
       23.70         0.10         0.07         0.10         0.03         7.92 
TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L 
        6.94        14.70         4.47         6.12         1.22        23.84 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX 
        2.17         0.66         1.02         1.45         1.58         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JK 
        0.82         3.52         1.32         1.97        25.41        20.78 
TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC 
       14.93         4.11       147.39       137.16        66.81       117.40 
TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI 
       96.95        78.71        81.96        26.56        36.36        16.64 
TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD 
        0.10         0.89         0.07        13.87         0.03        29.72 
TCGA-MY-A5BE TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DV 
        0.07         3.72         3.45         5.85         3.39         3.72 
TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-UC-A7PD TCGA-UC-A7PF 
        5.75         6.25        11.67        93.99 

  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
             0.10              0.03 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            73.45            177.04 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            14.96             10.67 
[1] "0.1 - 73.5 (15.0)"  "0.0 - 177.0 (10.7)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
[1] "hr=" "3.1"
D54V2, continuous
                   vv
clus                T1 T2+T3+T4
  7Q LOSS MUTATED    9        7
  7Q LOSS WILD-TYPE 72       25
D54V3, multiclass
          clus
vv         7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  T1                     9                72
  T2+T3+T4               7                25
D54V4, binary
                   cls
clus                 0  1
  7Q LOSS MUTATED    7  8
  7Q LOSS WILD-TYPE 66 28
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      7    8
  7Q LOSS WILD-TYPE   66   28
   clus
vv  7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  0               7                66
  1               8                28
                   vv
clus                M0 M1 MX
  7Q LOSS MUTATED    5  0 10
  7Q LOSS WILD-TYPE 56  3 43
D54V5, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  M0               5                56
  M1               0                 3
  MX              10                43
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  7Q LOSS MUTATED               0                               21
  7Q LOSS WILD-TYPE             2                              103
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  7Q LOSS MUTATED                                               0
  7Q LOSS WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  7Q LOSS MUTATED                                     4
  7Q LOSS WILD-TYPE                                  12
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  7Q LOSS MUTATED                                           0
  7Q LOSS WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  7Q LOSS MUTATED                                              0
  7Q LOSS WILD-TYPE                                            3
D54V6, multiclass
D54V7, binary
                   cls
clus                  0   1
  7Q LOSS MUTATED    10  15
  7Q LOSS WILD-TYPE  15 110
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED     10   15
  7Q LOSS WILD-TYPE   15  110
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  NO               10                15
  YES              15               110
D54V8, continuous
D54V9, continuous

Clustering(55) Variable = 8P LOSS MUTATION ANALYSIS
D55V1, survival
                   sevent
clus2                0  1
  8P LOSS MUTATED   27 10
  8P LOSS WILD-TYPE 88 18
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               37               106 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               10                18 
$`8P LOSS MUTATED`
TCGA-C5-A1BE TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MK 
       68.84        31.40        46.32        30.21        35.01         2.43 
TCGA-C5-A1MN TCGA-C5-A2LV TCGA-C5-A2LY TCGA-DS-A0VK TCGA-DS-A0VN TCGA-DS-A7WI 
       40.93        73.45        78.35        36.76       118.65         8.28 
TCGA-EA-A1QT TCGA-EA-A3HR TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EK-A2GZ 
        0.26         1.32        14.50         1.81        12.66        12.59 
TCGA-EK-A2H0 TCGA-EK-A2PG TCGA-EK-A2RM TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GN 
       45.96         0.53         2.24         0.07         0.10         0.03 
TCGA-EX-A3L1 TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3NI TCGA-FU-A3WB 
        6.94         6.12         1.22        23.84         1.45         0.82 
TCGA-HM-A3JJ TCGA-IR-A3LA TCGA-IR-A3LH TCGA-IR-A3LK TCGA-Q1-A6DT TCGA-RA-A741 
       21.67       137.16        78.71        26.56         3.39         3.88 
TCGA-UC-A7PD 
       11.67 

$`8P LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BJ 
       49.48        57.04        11.44        18.74        36.56       144.16 
TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 
      177.04       173.29        82.85         5.46        19.86        67.46 
TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MP TCGA-C5-A2LS 
       53.16        38.99        35.61         2.73         3.58        44.22 
TCGA-C5-A2LX TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF 
       16.14        38.43         0.82        52.01        18.02        17.85 
TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC 
       25.35       101.82       134.33        15.48         9.67        17.19 
TCGA-C5-A7UE TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VL 
       85.55        60.69         9.34        87.75        58.88         2.66 
TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-EA-A1QS 
      117.99        22.98        16.83        16.18         7.33         0.76 
TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A4BA 
        1.74         0.82         0.62         1.18        14.50        12.82 
TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF 
        0.26         1.48        13.91         0.69        14.99        14.96 
TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2IP TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC 
        0.62         0.39         6.64         0.59         0.07         4.04 
TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RN TCGA-EK-A3GK 
        0.03         0.36         1.18        23.70         0.10         0.10 
TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A449 TCGA-EX-A69L TCGA-FU-A2QG TCGA-FU-A3EO 
       20.35         7.92        14.70         4.47         0.92         2.17 
TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3YQ TCGA-FU-A40J 
        0.66         1.02         1.58         1.48         3.52         1.35 
TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 
        1.32         1.97        25.41        20.78        14.93         4.11 
TCGA-IR-A3L7 TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LI TCGA-IR-A3LL 
      147.39        66.81       117.40        96.95        81.96        36.36 
TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI 
       16.64         0.10         0.89         0.07        13.87         0.03 
TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 
       29.72         0.07         4.34         3.72         3.45         5.85 
TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-UC-A7PF 
        3.72         5.75         6.25        93.99 

  8P LOSS MUTATED 8P LOSS WILD-TYPE 
             0.03              0.03 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
           137.16            177.04 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
            12.59             12.13 
[1] "0.0 - 137.2 (12.6)" "0.0 - 177.0 (12.1)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D55V2, continuous
                   vv
clus                T1 T2+T3+T4
  8P LOSS MUTATED   18        9
  8P LOSS WILD-TYPE 63       23
D55V3, multiclass
          clus
vv         8P LOSS MUTATED 8P LOSS WILD-TYPE
  T1                    18                63
  T2+T3+T4               9                23
D55V4, binary
                   cls
clus                 0  1
  8P LOSS MUTATED   18  9
  8P LOSS WILD-TYPE 55 27
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     18    9
  8P LOSS WILD-TYPE   55   27
   clus
vv  8P LOSS MUTATED 8P LOSS WILD-TYPE
  0              18                55
  1               9                27
                   vv
clus                M0 M1 MX
  8P LOSS MUTATED   15  0 12
  8P LOSS WILD-TYPE 46  3 41
D55V5, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  M0              15                46
  M1               0                 3
  MX              12                41
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  8P LOSS MUTATED               0                               37
  8P LOSS WILD-TYPE             2                               87
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  8P LOSS MUTATED                                               0
  8P LOSS WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  8P LOSS MUTATED                                     2
  8P LOSS WILD-TYPE                                  14
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  8P LOSS MUTATED                                           1
  8P LOSS WILD-TYPE                                         0
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  8P LOSS MUTATED                                              0
  8P LOSS WILD-TYPE                                            3
D55V6, multiclass
D55V7, binary
                   cls
clus                 0  1
  8P LOSS MUTATED    9 31
  8P LOSS WILD-TYPE 16 94
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED      9   31
  8P LOSS WILD-TYPE   16   94
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  NO                9                16
  YES              31                94
D55V8, continuous
D55V9, continuous

Clustering(56) Variable = 8Q LOSS MUTATION ANALYSIS
D56V1, survival
                   sevent
clus2                 0   1
  8Q LOSS MUTATED     6   4
  8Q LOSS WILD-TYPE 109  24
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               10               133 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                4                24 
$`8Q LOSS MUTATED`
TCGA-C5-A1M6 TCGA-C5-A1M9 TCGA-C5-A1MN TCGA-DS-A0VN TCGA-EA-A439 TCGA-EA-A43B 
       31.40        35.01        40.93       118.65        14.50         1.81 
TCGA-EK-A2RM TCGA-EK-A2RO TCGA-EX-A3L1 TCGA-UC-A7PD 
        2.24         0.07         6.94        11.67 

$`8Q LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ 
      144.16       177.04       173.29        82.85         5.46        19.86 
TCGA-C5-A1M5 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MI 
       67.46        46.32        30.21        53.16        38.99        35.61 
TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LX 
        2.73         2.43         3.58        44.22        73.45        16.14 
TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF 
       78.35        38.43         0.82        52.01        18.02        17.85 
TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC 
       25.35       101.82       134.33        15.48         9.67        17.19 
TCGA-C5-A7UE TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
       85.55        60.69         9.34        87.75        58.88        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH 
        2.66       117.99        22.98        16.83        16.18         7.33 
TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS 
        8.28         0.76         0.26         1.74         1.32         0.82 
TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E 
        0.62         1.18        14.50        12.66        12.82         0.26 
TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX 
        1.48        13.91         0.69        14.99        14.96         0.62 
TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2R7 
        0.39        12.59        45.96         6.64         0.53         0.59 
TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL 
        0.07         4.04         0.03         0.36         1.18        23.70 
TCGA-EK-A2RN TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 
        0.10         0.10         0.10         0.03        20.35         7.92 
TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG 
       14.70         4.47         6.12         1.22        23.84         0.92 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX 
        2.17         0.66         1.02         1.45         1.58         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA 
        0.82         3.52         1.35         1.32         1.97        25.41 
TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA 
       21.67        20.78        14.93         4.11       147.39       137.16 
TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK 
       66.81       117.40        96.95        78.71        81.96        26.56 
TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y 
       36.36        16.64         0.10         0.89         0.07        13.87 
TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 
        0.03        29.72         0.07         4.34         3.72         3.45 
TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 
        5.85         3.39         3.72         5.75         6.25         3.88 
TCGA-UC-A7PF 
       93.99 

  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             0.07              0.03 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
           118.65            177.04 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
           13.085            12.590 
[1] "0.1 - 118.7 (13.1)" "0.0 - 177.0 (12.6)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
[1] "hr=" "2.3"
D56V2, continuous
                   vv
clus                T1 T2+T3+T4
  8Q LOSS MUTATED    3        3
  8Q LOSS WILD-TYPE 78       29
D56V3, multiclass
          clus
vv         8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  T1                     3                78
  T2+T3+T4               3                29
D56V4, binary
                   cls
clus                 0  1
  8Q LOSS MUTATED    5  1
  8Q LOSS WILD-TYPE 68 35
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      5    1
  8Q LOSS WILD-TYPE   68   35
   clus
vv  8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  0               5                68
  1               1                35
                   vv
clus                M0 M1 MX
  8Q LOSS MUTATED    6  0  0
  8Q LOSS WILD-TYPE 55  3 53
D56V5, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  M0               6                55
  M1               0                 3
  MX               0                53
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  8Q LOSS MUTATED               0                                9
  8Q LOSS WILD-TYPE             2                              115
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  8Q LOSS MUTATED                                               0
  8Q LOSS WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  8Q LOSS MUTATED                                     2
  8Q LOSS WILD-TYPE                                  14
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  8Q LOSS MUTATED                                           0
  8Q LOSS WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  8Q LOSS MUTATED                                              0
  8Q LOSS WILD-TYPE                                            3
D56V6, multiclass
D56V7, binary
                   cls
clus                  0   1
  8Q LOSS MUTATED     4   7
  8Q LOSS WILD-TYPE  21 118
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      4    7
  8Q LOSS WILD-TYPE   21  118
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  NO                4                21
  YES               7               118
D56V8, continuous
[1] "Remove cluster labels:" "8Q LOSS MUTATED"       
clus
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                2                41 
       TCGA-BI-A0VR        TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BN        TCGA-C5-A1BQ        TCGA-C5-A1M7 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI        TCGA-C5-A2LS 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2M2        TCGA-C5-A3HD 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CJ        TCGA-C5-A7CK        TCGA-C5-A7CL 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-C5-A7UE        TCGA-DR-A0ZM        TCGA-DS-A5RQ        TCGA-DS-A7WF 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-EX-A1H5        TCGA-FU-A2QG        TCGA-FU-A3EO        TCGA-FU-A3HY 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-FU-A3TQ        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A5XV 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7        TCGA-IR-A3LB 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-JW-A5VI        TCGA-MU-A5YI        TCGA-Q1-A6DW 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-RA-A741 
"8Q LOSS WILD-TYPE" 
D56V9, continuous

Clustering(57) Variable = 9P LOSS MUTATION ANALYSIS
D57V1, survival
                   sevent
clus2                0  1
  9P LOSS MUTATED   20  7
  9P LOSS WILD-TYPE 95 21
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               27               116 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
                7                21 
$`9P LOSS MUTATED`
TCGA-C5-A1BJ TCGA-C5-A1M6 TCGA-C5-A1M9 TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MN 
      144.16        31.40        35.01        35.61         2.73        40.93 
TCGA-C5-A7CH TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HR 
       25.35        60.69         9.34         0.76         0.26         1.32 
TCGA-EA-A43B TCGA-EA-A44S TCGA-EK-A2GZ TCGA-EK-A2PG TCGA-EK-A2RE TCGA-EK-A2RM 
        1.81        12.66        12.59         0.53         0.36         2.24 
TCGA-EX-A69M TCGA-FU-A3YQ TCGA-HM-A3JJ TCGA-LP-A4AW TCGA-MU-A5YI TCGA-MY-A5BD 
        6.12         3.52        21.67         0.89         0.03        29.72 
TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A6DT 
        3.72         3.45         3.39 

$`9P LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 
      177.04       173.29        82.85         5.46        19.86        67.46 
TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MK TCGA-C5-A1MP 
       46.32        30.21        53.16        38.99         2.43         3.58 
TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 
       44.22        73.45        16.14        78.35        38.43         0.82 
TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL 
       52.01        18.02        17.85       101.82       134.33        15.48 
TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
        9.67        17.19        85.55        87.75        58.88        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF 
        2.66       117.99       118.65        22.98        16.83        16.18 
TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE 
        7.33         8.28         1.74         0.82         0.62         1.18 
TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 
       14.50        14.50        12.82         0.26         1.48        13.91 
TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2H0 
        0.69        14.99        14.96         0.62         0.39        45.96 
TCGA-EK-A2IP TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RJ 
        6.64         0.59         0.07         4.04         0.03         1.18 
TCGA-EK-A2RL TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN 
       23.70         0.10         0.07         0.10         0.10         0.03 
TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-FU-A23K 
       20.35         7.92         6.94        14.70         4.47         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI 
       23.84         0.92         2.17         0.66         1.02         1.45 
TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV 
        1.58         1.48         0.82         1.35         1.32         1.97 
TCGA-HG-A2PA TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA 
       25.41        20.78        14.93         4.11       147.39       137.16 
TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK 
       66.81       117.40        96.95        78.71        81.96        26.56 
TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MY-A5BE 
       36.36        16.64         0.10         0.07        13.87         0.07 
TCGA-MY-A5BF TCGA-Q1-A5R3 TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 
        4.34         5.85         3.72         5.75         6.25         3.88 
TCGA-UC-A7PD TCGA-UC-A7PF 
       11.67        93.99 

  9P LOSS MUTATED 9P LOSS WILD-TYPE 
             0.03              0.03 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
           144.16            177.04 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
            3.720            14.205 
[1] "0.0 - 144.2 (3.7)"  "0.0 - 177.0 (14.2)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
[1] "hr=" "2.2"
D57V2, continuous
                   vv
clus                T1 T2+T3+T4
  9P LOSS MUTATED   12        5
  9P LOSS WILD-TYPE 69       27
D57V3, multiclass
          clus
vv         9P LOSS MUTATED 9P LOSS WILD-TYPE
  T1                    12                69
  T2+T3+T4               5                27
D57V4, binary
                   cls
clus                 0  1
  9P LOSS MUTATED   12  4
  9P LOSS WILD-TYPE 61 32
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     12    4
  9P LOSS WILD-TYPE   61   32
   clus
vv  9P LOSS MUTATED 9P LOSS WILD-TYPE
  0              12                61
  1               4                32
                   vv
clus                M0 M1 MX
  9P LOSS MUTATED   11  0  8
  9P LOSS WILD-TYPE 50  3 45
D57V5, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  M0              11                50
  M1               0                 3
  MX               8                45
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  9P LOSS MUTATED               0                               27
  9P LOSS WILD-TYPE             2                               97
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  9P LOSS MUTATED                                               0
  9P LOSS WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  9P LOSS MUTATED                                     2
  9P LOSS WILD-TYPE                                  14
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  9P LOSS MUTATED                                           0
  9P LOSS WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  9P LOSS MUTATED                                              1
  9P LOSS WILD-TYPE                                            2
D57V6, multiclass
D57V7, binary
                   cls
clus                  0   1
  9P LOSS MUTATED     6  24
  9P LOSS WILD-TYPE  19 101
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED      6   24
  9P LOSS WILD-TYPE   19  101
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  NO                6                19
  YES              24               101
D57V8, continuous
D57V9, continuous

Clustering(58) Variable = 9Q LOSS MUTATION ANALYSIS
D58V1, survival
                   sevent
clus2                 0   1
  9Q LOSS MUTATED    15   6
  9Q LOSS WILD-TYPE 100  22
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               21               122 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
                6                22 
$`9Q LOSS MUTATED`
TCGA-C5-A1M6 TCGA-C5-A1M9 TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A7CH TCGA-C5-A7UH 
       31.40        35.01        35.61         2.73        25.35        60.69 
TCGA-C5-A7X3 TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A43B TCGA-EK-A2GZ TCGA-EK-A2PG 
        9.34         0.76         0.26         1.81        12.59         0.53 
TCGA-EK-A2RE TCGA-EK-A2RM TCGA-EX-A69M TCGA-HM-A3JJ TCGA-IR-A3LF TCGA-MU-A5YI 
        0.36         2.24         6.12        21.67        96.95         0.03 
TCGA-MY-A5BD TCGA-Q1-A5R1 TCGA-Q1-A5R2 
       29.72         3.72         3.45 

$`9Q LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ 
      144.16       177.04       173.29        82.85         5.46        19.86 
TCGA-C5-A1M5 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MK 
       67.46        46.32        30.21        53.16        38.99         2.43 
TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2LY 
       40.93         3.58        44.22        73.45        16.14        78.35 
TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CJ 
       38.43         0.82        52.01        18.02        17.85       101.82 
TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE TCGA-DR-A0ZL 
      134.33        15.48         9.67        17.19        85.55        87.75 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
       58.88        36.76         2.66       117.99       118.65        22.98 
TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A3HQ TCGA-EA-A3HR 
       16.83        16.18         7.33         8.28         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A44S 
        0.82         0.62         1.18        14.50        14.50        12.66 
TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE 
       12.82         0.26         1.48        13.91         0.69        14.99 
TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2R7 
       14.96         0.62         0.39        45.96         6.64         0.59 
TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RN 
        0.07         4.04         0.03         1.18        23.70         0.10 
TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 
        0.07         0.10         0.10         0.03        20.35         7.92 
TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG 
        6.94        14.70         4.47         1.22        23.84         0.92 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX 
        2.17         0.66         1.02         1.45         1.58         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA 
        0.82         3.52         1.35         1.32         1.97        25.41 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB 
       20.78        14.93         4.11       147.39       137.16        66.81 
TCGA-IR-A3LC TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI 
      117.40        78.71        81.96        26.56        36.36        16.64 
TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MY-A5BE TCGA-MY-A5BF 
        0.10         0.89         0.07        13.87         0.07         4.34 
TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 
        5.85         3.39         3.72         5.75         6.25         3.88 
TCGA-UC-A7PD TCGA-UC-A7PF 
       11.67        93.99 

  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
             0.03              0.03 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
            96.95            177.04 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
            6.120            13.345 
[1] "0.0 - 97.0 (6.1)"   "0.0 - 177.0 (13.3)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
[1] "hr=" "2.4"
D58V2, continuous
                   vv
clus                T1 T2+T3+T4
  9Q LOSS MUTATED   10        3
  9Q LOSS WILD-TYPE 71       29
D58V3, multiclass
          clus
vv         9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  T1                    10                71
  T2+T3+T4               3                29
D58V4, binary
                   cls
clus                 0  1
  9Q LOSS MUTATED    9  3
  9Q LOSS WILD-TYPE 64 33
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED      9    3
  9Q LOSS WILD-TYPE   64   33
   clus
vv  9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  0               9                64
  1               3                33
                   vv
clus                M0 M1 MX
  9Q LOSS MUTATED    8  0  6
  9Q LOSS WILD-TYPE 53  3 47
D58V5, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  M0               8                53
  M1               0                 3
  MX               6                47
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  9Q LOSS MUTATED               0                               18
  9Q LOSS WILD-TYPE             2                              106
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  9Q LOSS MUTATED                                               1
  9Q LOSS WILD-TYPE                                             3
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  9Q LOSS MUTATED                                     3
  9Q LOSS WILD-TYPE                                  13
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  9Q LOSS MUTATED                                           0
  9Q LOSS WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  9Q LOSS MUTATED                                              1
  9Q LOSS WILD-TYPE                                            2
D58V6, multiclass
D58V7, binary
                   cls
clus                  0   1
  9Q LOSS MUTATED     4  19
  9Q LOSS WILD-TYPE  21 106
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED      4   19
  9Q LOSS WILD-TYPE   21  106
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  NO                4                21
  YES              19               106
D58V8, continuous
[1] "Remove cluster labels:" "9Q LOSS MUTATED"       
clus
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
                2                41 
       TCGA-BI-A0VR        TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BN        TCGA-C5-A1BQ        TCGA-C5-A1M7 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MN        TCGA-C5-A2LS 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2M2        TCGA-C5-A3HD 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CJ        TCGA-C5-A7CK        TCGA-C5-A7CL 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-C5-A7UE        TCGA-DR-A0ZM        TCGA-DS-A5RQ        TCGA-DS-A7WF 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-EX-A1H5        TCGA-FU-A2QG        TCGA-FU-A3EO        TCGA-FU-A3HY 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-FU-A3TQ        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A5XV 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7        TCGA-IR-A3LB 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-JW-A5VI        TCGA-Q1-A6DW        TCGA-RA-A741 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-UC-A7PD 
"9Q LOSS WILD-TYPE" 
D58V9, continuous

Clustering(59) Variable = 10P LOSS MUTATION ANALYSIS
D59V1, survival
                    sevent
clus2                 0  1
  10P LOSS MUTATED   18  9
  10P LOSS WILD-TYPE 97 19
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                27                116 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                 9                 19 
$`10P LOSS MUTATED`
TCGA-C5-A0TN TCGA-C5-A1BM TCGA-C5-A1BQ TCGA-C5-A1M6 TCGA-C5-A1MH TCGA-C5-A1MI 
       11.44        82.85        19.86        31.40        38.99        35.61 
TCGA-C5-A1MJ TCGA-C5-A1MN TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A7CM TCGA-EA-A439 
        2.73        40.93        73.45        16.14         9.67        14.50 
TCGA-EA-A5ZF TCGA-EK-A2RE TCGA-EK-A2RM TCGA-EK-A2RN TCGA-EX-A1H5 TCGA-FU-A23K 
       14.96         0.36         2.24         0.10        20.35         1.22 
TCGA-FU-A2QG TCGA-FU-A40J TCGA-HM-A3JK TCGA-IR-A3LB TCGA-IR-A3LH TCGA-LP-A4AX 
        0.92         1.35        20.78        66.81        78.71         0.07 
TCGA-Q1-A5R2 TCGA-Q1-A6DT TCGA-UC-A7PF 
        3.45         3.39        93.99 

$`10P LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BJ 
       49.48        57.04        68.84        18.74        36.56       144.16 
TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1M7 TCGA-C5-A1M8 
      177.04       173.29         5.46        67.46        46.32        30.21 
TCGA-C5-A1M9 TCGA-C5-A1MF TCGA-C5-A1MK TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LY 
       35.01        53.16         2.43         3.58        44.22        78.35 
TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CH 
       38.43         0.82        52.01        18.02        17.85        25.35 
TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7UH 
      101.82       134.33        15.48        17.19        85.55        60.69 
TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM 
        9.34        87.75        58.88        36.76         2.66       117.99 
TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI 
      118.65        22.98        16.83        16.18         7.33         8.28 
TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
        0.76         0.26         1.74         1.32         0.82         0.62 
TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E 
        1.18        14.50         1.81        12.66        12.82         0.26 
TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A6QX TCGA-EA-A78R 
        1.48        13.91         0.69        14.99         0.62         0.39 
TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB 
       12.59        45.96         6.64         0.53         0.59         0.07 
TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RO TCGA-EK-A3GJ 
        4.04         0.03         1.18        23.70         0.07         0.10 
TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L 
        0.10         0.03         7.92         6.94        14.70         4.47 
TCGA-EX-A69M TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI 
        6.12        23.84         2.17         0.66         1.02         1.45 
TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-FU-A5XV 
        1.58         1.48         0.82         3.52         1.32         1.97 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA 
       25.41        21.67        14.93         4.11       147.39       137.16 
TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI 
      117.40        96.95        81.96        26.56        36.36        16.64 
TCGA-LP-A4AU TCGA-LP-A4AW TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE 
        0.10         0.89        13.87         0.03        29.72         0.07 
TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R3 TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R 
        4.34         3.72         5.85         3.72         5.75         6.25 
TCGA-RA-A741 TCGA-UC-A7PD 
        3.88        11.67 

  10P LOSS MUTATED 10P LOSS WILD-TYPE 
              0.07               0.03 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
             93.99             177.04 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
            14.960             10.505 
[1] "0.1 - 94.0 (15.0)"  "0.0 - 177.0 (10.5)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
[1] "hr=" "2"  
D59V2, continuous
                    vv
clus                 T1 T2+T3+T4
  10P LOSS MUTATED   11        9
  10P LOSS WILD-TYPE 70       23
D59V3, multiclass
          clus
vv         10P LOSS MUTATED 10P LOSS WILD-TYPE
  T1                     11                 70
  T2+T3+T4                9                 23
D59V4, binary
                    cls
clus                  0  1
  10P LOSS MUTATED    8 11
  10P LOSS WILD-TYPE 65 25
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED      8   11
  10P LOSS WILD-TYPE   65   25
   clus
vv  10P LOSS MUTATED 10P LOSS WILD-TYPE
  0                8                 65
  1               11                 25
                    vv
clus                 M0 M1 MX
  10P LOSS MUTATED    7  0 14
  10P LOSS WILD-TYPE 54  3 39
D59V5, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  M0                7                 54
  M1                0                  3
  MX               14                 39
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  10P LOSS MUTATED               0                               26
  10P LOSS WILD-TYPE             2                               98
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  10P LOSS MUTATED                                               1
  10P LOSS WILD-TYPE                                             3
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  10P LOSS MUTATED                                     3
  10P LOSS WILD-TYPE                                  13
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  10P LOSS MUTATED                                           0
  10P LOSS WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  10P LOSS MUTATED                                              0
  10P LOSS WILD-TYPE                                            3
D59V6, multiclass
D59V7, binary
                    cls
clus                   0   1
  10P LOSS MUTATED     9  21
  10P LOSS WILD-TYPE  16 104
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED      9   21
  10P LOSS WILD-TYPE   16  104
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  NO                 9                 16
  YES               21                104
D59V8, continuous
D59V9, continuous

Clustering(60) Variable = 10Q LOSS MUTATION ANALYSIS
D60V1, survival
                    sevent
clus2                 0  1
  10Q LOSS MUTATED   20 10
  10Q LOSS WILD-TYPE 95 18
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                30                113 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                10                 18 
$`10Q LOSS MUTATED`
TCGA-C5-A0TN TCGA-C5-A1BM TCGA-C5-A1BQ TCGA-C5-A1M6 TCGA-C5-A1MH TCGA-C5-A1MI 
       11.44        82.85        19.86        31.40        38.99        35.61 
TCGA-C5-A1MJ TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A7CM TCGA-DS-A0VK TCGA-EA-A439 
        2.73        73.45        16.14         9.67        36.76        14.50 
TCGA-EA-A5ZF TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2RJ TCGA-EK-A2RM TCGA-EK-A2RN 
       14.96         0.39        12.59         1.18         2.24         0.10 
TCGA-EX-A1H5 TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3TQ TCGA-FU-A40J TCGA-HM-A3JJ 
       20.35         1.22         0.92         1.58         1.35        21.67 
TCGA-HM-A3JK TCGA-IR-A3LB TCGA-IR-A3LH TCGA-LP-A4AX TCGA-Q1-A5R2 TCGA-Q1-A6DT 
       20.78        66.81        78.71         0.07         3.45         3.39 

$`10Q LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BJ 
       49.48        57.04        68.84        18.74        36.56       144.16 
TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1M7 TCGA-C5-A1M8 
      177.04       173.29         5.46        67.46        46.32        30.21 
TCGA-C5-A1M9 TCGA-C5-A1MF TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS 
       35.01        53.16         2.43        40.93         3.58        44.22 
TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF 
       78.35        38.43         0.82        52.01        18.02        17.85 
TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7UC TCGA-C5-A7UE 
       25.35       101.82       134.33        15.48        17.19        85.55 
TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VL TCGA-DS-A0VM 
       60.69         9.34        87.75        58.88         2.66       117.99 
TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI 
      118.65        22.98        16.83        16.18         7.33         8.28 
TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
        0.76         0.26         1.74         1.32         0.82         0.62 
TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E 
        1.18        14.50         1.81        12.66        12.82         0.26 
TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A6QX TCGA-EK-A2H0 
        1.48        13.91         0.69        14.99         0.62        45.96 
TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD 
        6.64         0.53         0.59         0.07         4.04         0.03 
TCGA-EK-A2RE TCGA-EK-A2RL TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN 
        0.36        23.70         0.07         0.10         0.10         0.03 
TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23L 
        7.92         6.94        14.70         4.47         6.12        23.84 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TX TCGA-FU-A3WB 
        2.17         0.66         1.02         1.45         1.48         0.82 
TCGA-FU-A3YQ TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A4S6 TCGA-HM-A6W2 
        3.52         1.32         1.97        25.41        14.93         4.11 
TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LI TCGA-IR-A3LK 
      147.39       137.16       117.40        96.95        81.96        26.56 
TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-MU-A51Y TCGA-MU-A5YI 
       36.36        16.64         0.10         0.89        13.87         0.03 
TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R3 TCGA-Q1-A6DV 
       29.72         0.07         4.34         3.72         5.85         3.72 
TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        5.75         6.25         3.88        11.67        93.99 

  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
              0.07               0.03 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
             82.85             177.04 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
            13.545             11.670 
[1] "0.1 - 82.8 (13.5)"  "0.0 - 177.0 (11.7)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
[1] "hr=" "2.7"
D60V2, continuous
                    vv
clus                 T1 T2+T3+T4
  10Q LOSS MUTATED   14        9
  10Q LOSS WILD-TYPE 67       23
D60V3, multiclass
          clus
vv         10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  T1                     14                 67
  T2+T3+T4                9                 23
D60V4, binary
                    cls
clus                  0  1
  10Q LOSS MUTATED    8 13
  10Q LOSS WILD-TYPE 65 23
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED      8   13
  10Q LOSS WILD-TYPE   65   23
   clus
vv  10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  0                8                 65
  1               13                 23
                    vv
clus                 M0 M1 MX
  10Q LOSS MUTATED    8  0 16
  10Q LOSS WILD-TYPE 53  3 37
D60V5, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  M0                8                 53
  M1                0                  3
  MX               16                 37
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  10Q LOSS MUTATED               0                               29
  10Q LOSS WILD-TYPE             2                               95
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  10Q LOSS MUTATED                                               1
  10Q LOSS WILD-TYPE                                             3
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  10Q LOSS MUTATED                                     3
  10Q LOSS WILD-TYPE                                  13
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  10Q LOSS MUTATED                                           0
  10Q LOSS WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  10Q LOSS MUTATED                                              0
  10Q LOSS WILD-TYPE                                            3
D60V6, multiclass
D60V7, binary
                    cls
clus                   0   1
  10Q LOSS MUTATED     9  24
  10Q LOSS WILD-TYPE  16 101
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED      9   24
  10Q LOSS WILD-TYPE   16  101
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  NO                 9                 16
  YES               24                101
D60V8, continuous
D60V9, continuous

Clustering(61) Variable = 11P LOSS MUTATION ANALYSIS
D61V1, survival
                    sevent
clus2                 0  1
  11P LOSS MUTATED   32 10
  11P LOSS WILD-TYPE 83 18
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                42                101 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                10                 18 
$`11P LOSS MUTATED`
TCGA-BI-A0VR TCGA-C5-A1BF TCGA-C5-A1BK TCGA-C5-A1BQ TCGA-C5-A1M6 TCGA-C5-A1M7 
       49.48        18.74       177.04        19.86        31.40        46.32 
TCGA-C5-A1M8 TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A2LV TCGA-C5-A7CH 
       30.21        38.99        35.61         2.73        73.45        25.35 
TCGA-C5-A7UH TCGA-DR-A0ZL TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN 
       60.69        87.75        36.76         2.66       117.99       118.65 
TCGA-EA-A1QT TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A50E TCGA-EA-A5ZE 
        0.26        14.50         1.81        12.66         0.26        14.99 
TCGA-EA-A5ZF TCGA-EK-A2PG TCGA-EK-A2RM TCGA-EK-A3GJ TCGA-EX-A1H5 TCGA-FU-A23L 
       14.96         0.53         2.24         0.10        20.35        23.84 
TCGA-FU-A3NI TCGA-FU-A3WB TCGA-IR-A3LA TCGA-IR-A3LC TCGA-IR-A3LK TCGA-JW-A5VI 
        1.45         0.82       137.16       117.40        26.56        16.64 
TCGA-LP-A4AU TCGA-LP-A4AX TCGA-MY-A5BE TCGA-Q1-A5R2 TCGA-Q1-A6DT TCGA-UC-A7PD 
        0.10         0.07         0.07         3.45         3.39        11.67 

$`11P LOSS WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BI TCGA-C5-A1BJ TCGA-C5-A1BL 
       57.04        11.44        68.84        36.56       144.16       173.29 
TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1M9 TCGA-C5-A1MF TCGA-C5-A1MK 
       82.85         5.46        67.46        35.01        53.16         2.43 
TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 
       40.93         3.58        44.22        16.14        78.35        38.43 
TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CJ TCGA-C5-A7CK 
        0.82        52.01        18.02        17.85       101.82       134.33 
TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7X3 TCGA-DR-A0ZM 
       15.48         9.67        17.19        85.55         9.34        58.88 
TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS 
       22.98        16.83        16.18         7.33         8.28         0.76 
TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 
        1.74         1.32         0.82         0.62         1.18        14.50 
TCGA-EA-A4BA TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A6QX TCGA-EA-A78R 
       12.82         1.48        13.91         0.69         0.62         0.39 
TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC 
       12.59        45.96         6.64         0.59         0.07         4.04 
TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RN TCGA-EK-A2RO 
        0.03         0.36         1.18        23.70         0.10         0.07 
TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L 
        0.10         0.03         7.92         6.94        14.70         4.47 
TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ 
        6.12         1.22         0.92         2.17         0.66         1.02 
TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV 
        1.58         1.48         3.52         1.35         1.32         1.97 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 
       25.41        21.67        20.78        14.93         4.11       147.39 
TCGA-IR-A3LB TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LL TCGA-LP-A4AW 
       66.81        96.95        78.71        81.96        36.36         0.89 
TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R3 
       13.87         0.03        29.72         4.34         3.72         5.85 
TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PF 
        3.72         5.75         6.25         3.88        93.99 

  11P LOSS MUTATED 11P LOSS WILD-TYPE 
              0.07               0.03 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
            177.04             173.29 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
             17.69               7.92 
[1] "0.1 - 177.0 (17.7)" "0.0 - 173.3 (7.9)" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D61V2, continuous
                    vv
clus                 T1 T2+T3+T4
  11P LOSS MUTATED   25        9
  11P LOSS WILD-TYPE 56       23
D61V3, multiclass
          clus
vv         11P LOSS MUTATED 11P LOSS WILD-TYPE
  T1                     25                 56
  T2+T3+T4                9                 23
D61V4, binary
                    cls
clus                  0  1
  11P LOSS MUTATED   23 10
  11P LOSS WILD-TYPE 50 26
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     23   10
  11P LOSS WILD-TYPE   50   26
   clus
vv  11P LOSS MUTATED 11P LOSS WILD-TYPE
  0               23                 50
  1               10                 26
                    vv
clus                 M0 M1 MX
  11P LOSS MUTATED   21  0 15
  11P LOSS WILD-TYPE 40  3 38
D61V5, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  M0               21                 40
  M1                0                  3
  MX               15                 38
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  11P LOSS MUTATED               0                               44
  11P LOSS WILD-TYPE             2                               80
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  11P LOSS MUTATED                                               0
  11P LOSS WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  11P LOSS MUTATED                                     2
  11P LOSS WILD-TYPE                                  14
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  11P LOSS MUTATED                                           1
  11P LOSS WILD-TYPE                                         0
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  11P LOSS MUTATED                                              0
  11P LOSS WILD-TYPE                                            3
D61V6, multiclass
D61V7, binary
                    cls
clus                  0  1
  11P LOSS MUTATED    7 40
  11P LOSS WILD-TYPE 18 85
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED      7   40
  11P LOSS WILD-TYPE   18   85
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  NO                 7                 18
  YES               40                 85
D61V8, continuous
D61V9, continuous

Clustering(62) Variable = 11Q LOSS MUTATION ANALYSIS
D62V1, survival
                    sevent
clus2                 0  1
  11Q LOSS MUTATED   46 11
  11Q LOSS WILD-TYPE 69 17
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                57                 86 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                11                 17 
$`11Q LOSS MUTATED`
TCGA-BI-A0VR TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 
       49.48        68.84        18.74        31.40        46.32        30.21 
TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A2LV 
       53.16        38.99        35.61         2.73         2.43        73.45 
TCGA-C5-A2M2 TCGA-C5-A7CH TCGA-C5-A7CM TCGA-C5-A7UH TCGA-DR-A0ZL TCGA-DS-A0VK 
        0.82        25.35         9.67        60.69        87.75        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A439 
        2.66       117.99       118.65        16.83         0.26        14.50 
TCGA-EA-A43B TCGA-EA-A50E TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A78R TCGA-EK-A2GZ 
        1.81         0.26        14.99        14.96         0.39        12.59 
TCGA-EK-A2PG TCGA-EK-A2RD TCGA-EK-A2RM TCGA-EK-A3GJ TCGA-EX-A1H5 TCGA-EX-A69L 
        0.53         0.03         2.24         0.10        20.35         4.47 
TCGA-EX-A69M TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-IR-A3LA TCGA-IR-A3LB 
        6.12         1.45         1.58         0.82       137.16        66.81 
TCGA-IR-A3LC TCGA-IR-A3LI TCGA-LP-A4AU TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI 
      117.40        81.96         0.10         0.07        13.87         0.03 
TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R2 TCGA-Q1-A6DT TCGA-Q1-A6DW 
       29.72         0.07         4.34         3.45         3.39         5.75 
TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        3.88        11.67        93.99 

$`11Q LOSS WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BI TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL 
       57.04        11.44        36.56       144.16       177.04       173.29 
TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 TCGA-C5-A1M9 TCGA-C5-A1MN 
       82.85         5.46        19.86        67.46        35.01        40.93 
TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A3HD 
        3.58        44.22        16.14        78.35        38.43        52.01 
TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7UC 
       18.02        17.85       101.82       134.33        15.48        17.19 
TCGA-C5-A7UE TCGA-C5-A7X3 TCGA-DR-A0ZM TCGA-DS-A3LQ TCGA-DS-A7WF TCGA-DS-A7WH 
       85.55         9.34        58.88        22.98        16.18         7.33 
TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
        8.28         0.76         1.74         1.32         0.82         0.62 
TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A5FO TCGA-EA-A5O9 
        1.18        14.50        12.66        12.82         1.48        13.91 
TCGA-EA-A5ZD TCGA-EA-A6QX TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2R7 TCGA-EK-A2RB 
        0.69         0.62        45.96         6.64         0.59         0.07 
TCGA-EK-A2RC TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RN TCGA-EK-A2RO 
        4.04         0.36         1.18        23.70         0.10         0.07 
TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-FU-A23K 
        0.10         0.03         7.92         6.94        14.70         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TX 
       23.84         0.92         2.17         0.66         1.02         1.48 
TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ 
        3.52         1.35         1.32         1.97        25.41        21.67 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LF TCGA-IR-A3LH 
       20.78        14.93         4.11       147.39        96.95        78.71 
TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AW TCGA-Q1-A5R1 TCGA-Q1-A5R3 
       26.56        36.36        16.64         0.89         3.72         5.85 
TCGA-Q1-A6DV TCGA-Q1-A73R 
        3.72         6.25 

  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
              0.03               0.03 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
            137.16             177.04 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
             12.59              12.05 
[1] "0.0 - 137.2 (12.6)" "0.0 - 177.0 (12.1)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
[1] "hr=" "1.1"
D62V2, continuous
                    vv
clus                 T1 T2+T3+T4
  11Q LOSS MUTATED   32       11
  11Q LOSS WILD-TYPE 49       21
D62V3, multiclass
          clus
vv         11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  T1                     32                 49
  T2+T3+T4               11                 21
D62V4, binary
                    cls
clus                  0  1
  11Q LOSS MUTATED   28 13
  11Q LOSS WILD-TYPE 45 23
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED     28   13
  11Q LOSS WILD-TYPE   45   23
   clus
vv  11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  0               28                 45
  1               13                 23
                    vv
clus                 M0 M1 MX
  11Q LOSS MUTATED   24  1 21
  11Q LOSS WILD-TYPE 37  2 32
D62V5, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  M0               24                 37
  M1                1                  2
  MX               21                 32
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  11Q LOSS MUTATED               0                               54
  11Q LOSS WILD-TYPE             2                               70
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  11Q LOSS MUTATED                                               1
  11Q LOSS WILD-TYPE                                             3
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  11Q LOSS MUTATED                                     4
  11Q LOSS WILD-TYPE                                  12
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  11Q LOSS MUTATED                                           1
  11Q LOSS WILD-TYPE                                         0
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  11Q LOSS MUTATED                                              0
  11Q LOSS WILD-TYPE                                            3
D62V6, multiclass
D62V7, binary
                    cls
clus                  0  1
  11Q LOSS MUTATED   10 50
  11Q LOSS WILD-TYPE 15 75
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED     10   50
  11Q LOSS WILD-TYPE   15   75
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  NO                10                 15
  YES               50                 75
D62V8, continuous
D62V9, continuous

Clustering(63) Variable = 12P LOSS MUTATION ANALYSIS
D63V1, survival
                    sevent
clus2                 0  1
  12P LOSS MUTATED   16  4
  12P LOSS WILD-TYPE 99 24
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                20                123 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                 4                 24 
$`12P LOSS MUTATED`
TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MN TCGA-C5-A2LV 
      177.04       173.29        30.21        35.01        40.93        73.45 
TCGA-C5-A2M1 TCGA-C5-A7UH TCGA-DS-A0VK TCGA-DS-A0VL TCGA-EA-A1QT TCGA-EA-A43B 
       38.43        60.69        36.76         2.66         0.26         1.81 
TCGA-EK-A2PG TCGA-FU-A2QG TCGA-FU-A40J TCGA-IR-A3LH TCGA-IR-A3LK TCGA-LP-A4AX 
        0.53         0.92         1.35        78.71        26.56         0.07 
TCGA-Q1-A5R2 TCGA-Q1-A6DT 
        3.45         3.39 

$`12P LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 TCGA-C5-A1M6 
      144.16        82.85         5.46        19.86        67.46        31.40 
TCGA-C5-A1M7 TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MK 
       46.32        53.16        38.99        35.61         2.73         2.43 
TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M2 TCGA-C5-A3HD 
        3.58        44.22        16.14        78.35         0.82        52.01 
TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL 
       18.02        17.85        25.35       101.82       134.33        15.48 
TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DR-A0ZM 
        9.67        17.19        85.55         9.34        87.75        58.88 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH 
      117.99       118.65        22.98        16.83        16.18         7.33 
TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
        8.28         0.76         1.74         1.32         0.82         0.62 
TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E 
        1.18        14.50        14.50        12.66        12.82         0.26 
TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX 
        1.48        13.91         0.69        14.99        14.96         0.62 
TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2R7 TCGA-EK-A2RB 
        0.39        12.59        45.96         6.64         0.59         0.07 
TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RM 
        4.04         0.03         0.36         1.18        23.70         2.24 
TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 
        0.10         0.07         0.10         0.10         0.03        20.35 
TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K 
        7.92         6.94        14.70         4.47         6.12         1.22 
TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ 
       23.84         2.17         0.66         1.02         1.45         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA 
        1.48         0.82         3.52         1.32         1.97        25.41 
TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA 
       21.67        20.78        14.93         4.11       147.39       137.16 
TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LI TCGA-IR-A3LL TCGA-JW-A5VI 
       66.81       117.40        96.95        81.96        36.36        16.64 
TCGA-LP-A4AU TCGA-LP-A4AW TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE 
        0.10         0.89        13.87         0.03        29.72         0.07 
TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R3 TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R 
        4.34         3.72         5.85         3.72         5.75         6.25 
TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        3.88        11.67        93.99 

  12P LOSS MUTATED 12P LOSS WILD-TYPE 
              0.07               0.03 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
            177.04             147.39 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
            28.385             11.670 
[1] "0.1 - 177.0 (28.4)" "0.0 - 147.4 (11.7)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
  "12P LOSS MUTATED"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
  "12P LOSS MUTATED"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
  "12P LOSS MUTATED"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D63V2, continuous
                    vv
clus                 T1 T2+T3+T4
  12P LOSS MUTATED   13        3
  12P LOSS WILD-TYPE 68       29
D63V3, multiclass
          clus
vv         12P LOSS MUTATED 12P LOSS WILD-TYPE
  T1                     13                 68
  T2+T3+T4                3                 29
D63V4, binary
                    cls
clus                  0  1
  12P LOSS MUTATED   11  5
  12P LOSS WILD-TYPE 62 31
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED     11    5
  12P LOSS WILD-TYPE   62   31
   clus
vv  12P LOSS MUTATED 12P LOSS WILD-TYPE
  0               11                 62
  1                5                 31
                    vv
clus                 M0 M1 MX
  12P LOSS MUTATED    9  0  8
  12P LOSS WILD-TYPE 52  3 45
D63V5, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  M0                9                 52
  M1                0                  3
  MX                8                 45
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  12P LOSS MUTATED               0                               19
  12P LOSS WILD-TYPE             2                              105
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  12P LOSS MUTATED                                               0
  12P LOSS WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  12P LOSS MUTATED                                     3
  12P LOSS WILD-TYPE                                  13
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  12P LOSS MUTATED                                           0
  12P LOSS WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  12P LOSS MUTATED                                              0
  12P LOSS WILD-TYPE                                            3
D63V6, multiclass
D63V7, binary
                    cls
clus                   0   1
  12P LOSS MUTATED     4  18
  12P LOSS WILD-TYPE  21 107
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      4   18
  12P LOSS WILD-TYPE   21  107
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  NO                 4                 21
  YES               18                107
D63V8, continuous
D63V9, continuous

Clustering(64) Variable = 12Q LOSS MUTATION ANALYSIS
D64V1, survival
                    sevent
clus2                  0   1
  12Q LOSS MUTATED     3   2
  12Q LOSS WILD-TYPE 112  26
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 5                138 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 2                 26 
$`12Q LOSS MUTATED`
TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MN TCGA-C5-A7UH TCGA-EK-A2PG 
       30.21        35.01        40.93        60.69         0.53 

$`12Q LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ 
      144.16       177.04       173.29        82.85         5.46        19.86 
TCGA-C5-A1M5 TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MI 
       67.46        31.40        46.32        53.16        38.99        35.61 
TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LX 
        2.73         2.43         3.58        44.22        73.45        16.14 
TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF 
       78.35        38.43         0.82        52.01        18.02        17.85 
TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC 
       25.35       101.82       134.33        15.48         9.67        17.19 
TCGA-C5-A7UE TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL 
       85.55         9.34        87.75        58.88        36.76         2.66 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH 
      117.99       118.65        22.98        16.83        16.18         7.33 
TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS 
        8.28         0.76         0.26         1.74         1.32         0.82 
TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S 
        0.62         1.18        14.50        14.50         1.81        12.66 
TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE 
       12.82         0.26         1.48        13.91         0.69        14.99 
TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP 
       14.96         0.62         0.39        12.59        45.96         6.64 
TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RJ 
        0.59         0.07         4.04         0.03         0.36         1.18 
TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK 
       23.70         2.24         0.10         0.07         0.10         0.10 
TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L 
        0.03        20.35         7.92         6.94        14.70         4.47 
TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY 
        6.12         1.22        23.84         0.92         2.17         0.66 
TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ 
        1.02         1.45         1.58         1.48         0.82         3.52 
TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK 
        1.35         1.32         1.97        25.41        21.67        20.78 
TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC 
       14.93         4.11       147.39       137.16        66.81       117.40 
TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI 
       96.95        78.71        81.96        26.56        36.36        16.64 
TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD 
        0.10         0.89         0.07        13.87         0.03        29.72 
TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DT 
        0.07         4.34         3.72         3.45         5.85         3.39 
TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        3.72         5.75         6.25         3.88        11.67        93.99 

  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              0.53               0.03 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
             60.69             177.04 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
            35.010             11.555 
[1] "0.5 - 60.7 (35.0)"  "0.0 - 177.0 (11.6)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D64V2, continuous
                    vv
clus                 T1 T2+T3+T4
  12Q LOSS MUTATED    2        1
  12Q LOSS WILD-TYPE 79       31
D64V3, multiclass
          clus
vv         12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  T1                      2                 79
  T2+T3+T4                1                 31
D64V4, binary
                    cls
clus                  0  1
  12Q LOSS MUTATED    2  1
  12Q LOSS WILD-TYPE 71 35
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      2    1
  12Q LOSS WILD-TYPE   71   35
   clus
vv  12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  0                2                 71
  1                1                 35
                    vv
clus                 M0 M1 MX
  12Q LOSS MUTATED    1  0  2
  12Q LOSS WILD-TYPE 60  3 51
D64V5, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  M0                1                 60
  M1                0                  3
  MX                2                 51
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  12Q LOSS MUTATED               0                                6
  12Q LOSS WILD-TYPE             2                              118
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  12Q LOSS MUTATED                                               0
  12Q LOSS WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  12Q LOSS MUTATED                                     1
  12Q LOSS WILD-TYPE                                  15
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  12Q LOSS MUTATED                                           0
  12Q LOSS WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  12Q LOSS MUTATED                                              0
  12Q LOSS WILD-TYPE                                            3
D64V6, multiclass
D64V7, binary
                    cls
clus                   0   1
  12Q LOSS MUTATED     3   4
  12Q LOSS WILD-TYPE  22 121
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      3    4
  12Q LOSS WILD-TYPE   22  121
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  NO                 3                 22
  YES                4                121
D64V8, continuous
[1] "Remove cluster labels:" "12Q LOSS MUTATED"      
clus
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 1                 42 
        TCGA-BI-A0VR         TCGA-C5-A1BF         TCGA-C5-A1BI 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BL         TCGA-C5-A1BN 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A1BQ         TCGA-C5-A1M7         TCGA-C5-A1MF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A2LS 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A2LV         TCGA-C5-A2LX         TCGA-C5-A2M2 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HF         TCGA-C5-A7CJ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A7CK         TCGA-C5-A7CL         TCGA-C5-A7UE 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZM         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-FU-A2QG         TCGA-FU-A3EO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FU-A3HY         TCGA-FU-A3TQ         TCGA-FU-A3WB 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FU-A3YQ         TCGA-FU-A5XV         TCGA-HM-A4S6 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LB 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-JW-A5VI         TCGA-MU-A5YI 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-RA-A741         TCGA-UC-A7PD 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
D64V9, continuous
[1] "Remove cluster labels:" "12Q LOSS MUTATED"      
clus
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                 2                 91 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BK 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A1BL         TCGA-C5-A1BM         TCGA-C5-A1M5 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A1M7         TCGA-C5-A1MF         TCGA-C5-A1MI 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A1MJ         TCGA-C5-A1MP         TCGA-C5-A2LV 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A2LX         TCGA-C5-A2LY         TCGA-C5-A2M1 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A3HF         TCGA-C5-A7CJ         TCGA-C5-A7UC 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-DR-A0ZL         TCGA-DR-A0ZM 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DS-A0VK         TCGA-DS-A0VL         TCGA-DS-A0VM 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DS-A0VN         TCGA-DS-A3LQ         TCGA-DS-A5RQ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-DS-A7WF         TCGA-DS-A7WH         TCGA-DS-A7WI 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EA-A1QS         TCGA-EA-A1QT         TCGA-EA-A3HQ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EA-A3HR         TCGA-EA-A3HS         TCGA-EA-A3HT 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A43B         TCGA-EA-A44S 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EA-A4BA         TCGA-EA-A50E         TCGA-EA-A5FO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EA-A5O9         TCGA-EA-A6QX         TCGA-EK-A2RO 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EK-A3GK         TCGA-EX-A1H5         TCGA-EX-A1H6 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-EX-A3L1         TCGA-EX-A69L         TCGA-EX-A69M 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IR-A3L7         TCGA-IR-A3LA         TCGA-IR-A3LB 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IR-A3LC         TCGA-IR-A3LF         TCGA-IR-A3LH 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-IR-A3LI         TCGA-IR-A3LK         TCGA-IR-A3LL 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-LP-A4AX         TCGA-MU-A51Y         TCGA-MU-A5YI 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-MY-A5BD         TCGA-MY-A5BF         TCGA-Q1-A5R1 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DV         TCGA-RA-A741         TCGA-UC-A7PD 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-UC-A7PF 
"12Q LOSS WILD-TYPE" 

Clustering(65) Variable = 13Q LOSS MUTATION ANALYSIS
D65V1, survival
                    sevent
clus2                 0  1
  13Q LOSS MUTATED   30  5
  13Q LOSS WILD-TYPE 85 23
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                35                108 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                 5                 23 
$`13Q LOSS MUTATED`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BF TCGA-C5-A1BM TCGA-C5-A1M6 TCGA-C5-A1MH 
       49.48        57.04        18.74        82.85        31.40        38.99 
TCGA-C5-A2LX TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A7CH TCGA-C5-A7UE TCGA-C5-A7X3 
       16.14        52.01        18.02        25.35        85.55         9.34 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3QE TCGA-EA-A439 
      117.99       118.65        22.98         0.26         1.18        14.50 
TCGA-EK-A2GZ TCGA-EK-A2R7 TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RM TCGA-EX-A1H5 
       12.59         0.59         0.03         0.36         2.24        20.35 
TCGA-FU-A23L TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A4S6 
       23.84         1.45         1.58         1.97        25.41        14.93 
TCGA-HM-A6W2 TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-Q1-A6DT 
        4.11         0.10         0.89         0.07         3.39 

$`13Q LOSS WILD-TYPE`
TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BI TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL 
       11.44        68.84        36.56       144.16       177.04       173.29 
TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 
        5.46        19.86        67.46        46.32        30.21        35.01 
TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP 
       53.16        35.61         2.73         2.43        40.93         3.58 
TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HF 
       44.22        73.45        78.35        38.43         0.82        17.85 
TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UH 
      101.82       134.33        15.48         9.67        17.19        60.69 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A5RQ TCGA-DS-A7WF 
       87.75        58.88        36.76         2.66        16.83        16.18 
TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS 
        7.33         8.28         0.76         1.74         1.32         0.82 
TCGA-EA-A3HT TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E 
        0.62        14.50         1.81        12.66        12.82         0.26 
TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX 
        1.48        13.91         0.69        14.99        14.96         0.62 
TCGA-EA-A78R TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2RB TCGA-EK-A2RC 
        0.39        45.96         6.64         0.53         0.07         4.04 
TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK 
        1.18        23.70         0.10         0.07         0.10         0.10 
TCGA-EK-A3GN TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M 
        0.03         7.92         6.94        14.70         4.47         6.12 
TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TX 
        1.22         0.92         2.17         0.66         1.02         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-HM-A3JJ TCGA-HM-A3JK 
        0.82         3.52         1.35         1.32        21.67        20.78 
TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH 
      147.39       137.16        66.81       117.40        96.95        78.71 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-MU-A51Y TCGA-MU-A5YI 
       81.96        26.56        36.36        16.64        13.87         0.03 
TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 
       29.72         0.07         4.34         3.72         3.45         5.85 
TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        3.72         5.75         6.25         3.88        11.67        93.99 

  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
              0.03               0.03 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
            118.65             177.04 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
            14.930             10.555 
[1] "0.0 - 118.7 (14.9)" "0.0 - 177.0 (10.6)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D65V2, continuous
                    vv
clus                 T1 T2+T3+T4
  13Q LOSS MUTATED   16       11
  13Q LOSS WILD-TYPE 65       21
D65V3, multiclass
          clus
vv         13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  T1                     16                 65
  T2+T3+T4               11                 21
D65V4, binary
                    cls
clus                  0  1
  13Q LOSS MUTATED   16 12
  13Q LOSS WILD-TYPE 57 24
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     16   12
  13Q LOSS WILD-TYPE   57   24
   clus
vv  13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  0               16                 57
  1               12                 24
                    vv
clus                 M0 M1 MX
  13Q LOSS MUTATED   15  1 13
  13Q LOSS WILD-TYPE 46  2 40
D65V5, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  M0               15                 46
  M1                1                  2
  MX               13                 40
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  13Q LOSS MUTATED               1                               38
  13Q LOSS WILD-TYPE             1                               86
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  13Q LOSS MUTATED                                               0
  13Q LOSS WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  13Q LOSS MUTATED                                     0
  13Q LOSS WILD-TYPE                                  16
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  13Q LOSS MUTATED                                           0
  13Q LOSS WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  13Q LOSS MUTATED                                              0
  13Q LOSS WILD-TYPE                                            3
D65V6, multiclass
D65V7, binary
                    cls
clus                  0  1
  13Q LOSS MUTATED    8 31
  13Q LOSS WILD-TYPE 17 94
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED      8   31
  13Q LOSS WILD-TYPE   17   94
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  NO                 8                 17
  YES               31                 94
D65V8, continuous
D65V9, continuous

Clustering(66) Variable = 14Q LOSS MUTATION ANALYSIS
D66V1, survival
                    sevent
clus2                  0   1
  14Q LOSS MUTATED    14   1
  14Q LOSS WILD-TYPE 101  27
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                15                128 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                 1                 27 
$`14Q LOSS MUTATED`
TCGA-C5-A1MJ TCGA-C5-A2LX TCGA-C5-A2M1 TCGA-C5-A3HE TCGA-C5-A7CM TCGA-EA-A3Y4 
        2.73        16.14        38.43        18.02         9.67        14.50 
TCGA-EA-A43B TCGA-EA-A78R TCGA-EK-A2PG TCGA-EK-A2RJ TCGA-EK-A2RM TCGA-FU-A23L 
        1.81         0.39         0.53         1.18         2.24        23.84 
TCGA-FU-A3TX TCGA-LP-A4AU TCGA-Q1-A5R2 
        1.48         0.10         3.45 

$`14Q LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ 
      144.16       177.04       173.29        82.85         5.46        19.86 
TCGA-C5-A1M5 TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF 
       67.46        31.40        46.32        30.21        35.01        53.16 
TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS 
       38.99        35.61         2.43        40.93         3.58        44.22 
TCGA-C5-A2LV TCGA-C5-A2LY TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HF TCGA-C5-A7CH 
       73.45        78.35         0.82        52.01        17.85        25.35 
TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7UH 
      101.82       134.33        15.48        17.19        85.55        60.69 
TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM 
        9.34        87.75        58.88        36.76         2.66       117.99 
TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI 
      118.65        22.98        16.83        16.18         7.33         8.28 
TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
        0.76         0.26         1.74         1.32         0.82         0.62 
TCGA-EA-A3QE TCGA-EA-A439 TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO 
        1.18        14.50        12.66        12.82         0.26         1.48 
TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EK-A2GZ 
       13.91         0.69        14.99        14.96         0.62        12.59 
TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD 
       45.96         6.64         0.59         0.07         4.04         0.03 
TCGA-EK-A2RE TCGA-EK-A2RL TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK 
        0.36        23.70         0.10         0.07         0.10         0.10 
TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L 
        0.03        20.35         7.92         6.94        14.70         4.47 
TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ 
        6.12         1.22         0.92         2.17         0.66         1.02 
TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G 
        1.45         1.58         0.82         3.52         1.35         1.32 
TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 
        1.97        25.41        21.67        20.78        14.93         4.11 
TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH 
      147.39       137.16        66.81       117.40        96.95        78.71 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AW TCGA-LP-A4AX 
       81.96        26.56        36.36        16.64         0.89         0.07 
TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 
       13.87         0.03        29.72         0.07         4.34         3.72 
TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 
        5.85         3.39         3.72         5.75         6.25         3.88 
TCGA-UC-A7PD TCGA-UC-A7PF 
       11.67        93.99 

  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
              0.10               0.03 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
             38.43             177.04 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
             2.730             13.345 
[1] "0.1 - 38.4 (2.7)"   "0.0 - 177.0 (13.3)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D66V2, continuous
                    vv
clus                 T1 T2+T3+T4
  14Q LOSS MUTATED    8        3
  14Q LOSS WILD-TYPE 73       29
D66V3, multiclass
          clus
vv         14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  T1                      8                 73
  T2+T3+T4                3                 29
D66V4, binary
                    cls
clus                  0  1
  14Q LOSS MUTATED    8  2
  14Q LOSS WILD-TYPE 65 34
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      8    2
  14Q LOSS WILD-TYPE   65   34
   clus
vv  14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  0                8                 65
  1                2                 34
                    vv
clus                 M0 M1 MX
  14Q LOSS MUTATED    6  0  6
  14Q LOSS WILD-TYPE 55  3 47
D66V5, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  M0                6                 55
  M1                0                  3
  MX                6                 47
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  14Q LOSS MUTATED               0                               14
  14Q LOSS WILD-TYPE             2                              110
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  14Q LOSS MUTATED                                               1
  14Q LOSS WILD-TYPE                                             3
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  14Q LOSS MUTATED                                     2
  14Q LOSS WILD-TYPE                                  14
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  14Q LOSS MUTATED                                           0
  14Q LOSS WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  14Q LOSS MUTATED                                              0
  14Q LOSS WILD-TYPE                                            3
D66V6, multiclass
D66V7, binary
                    cls
clus                   0   1
  14Q LOSS MUTATED     1  16
  14Q LOSS WILD-TYPE  24 109
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      1   16
  14Q LOSS WILD-TYPE   24  109
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  NO                 1                 24
  YES               16                109
D66V8, continuous
[1] "Remove cluster labels:" "14Q LOSS MUTATED"      
clus
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                 1                 42 
        TCGA-BI-A0VR         TCGA-C5-A1BF         TCGA-C5-A1BI 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BL         TCGA-C5-A1BN 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A1BQ         TCGA-C5-A1M7         TCGA-C5-A1MF 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MN 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2M2 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HF         TCGA-C5-A7CJ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-C5-A7CK         TCGA-C5-A7CL         TCGA-C5-A7UE 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZM         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-FU-A2QG         TCGA-FU-A3EO 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FU-A3HY         TCGA-FU-A3TQ         TCGA-FU-A3WB 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-FU-A3YQ         TCGA-FU-A5XV         TCGA-HM-A4S6 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LB 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-JW-A5VI         TCGA-MU-A5YI 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-RA-A741         TCGA-UC-A7PD 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
D66V9, continuous

Clustering(67) Variable = 15Q LOSS MUTATION ANALYSIS
D67V1, survival
                    sevent
clus2                  0   1
  15Q LOSS MUTATED    14   4
  15Q LOSS WILD-TYPE 101  24
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                18                125 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                 4                 24 
$`15Q LOSS MUTATED`
TCGA-BI-A0VS TCGA-C5-A1M9 TCGA-C5-A1MH TCGA-C5-A2LV TCGA-C5-A7CH TCGA-C5-A7UC 
       57.04        35.01        38.99        73.45        25.35        17.19 
TCGA-DR-A0ZL TCGA-DS-A7WH TCGA-EA-A439 TCGA-EK-A2GZ TCGA-EK-A2RJ TCGA-EK-A2RN 
       87.75         7.33        14.50        12.59         1.18         0.10 
TCGA-HM-A3JJ TCGA-HM-A6W2 TCGA-IR-A3LH TCGA-LP-A4AX TCGA-Q1-A5R1 TCGA-Q1-A5R2 
       21.67         4.11        78.71         0.07         3.72         3.45 

$`15Q LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BJ 
       49.48        11.44        68.84        18.74        36.56       144.16 
TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 
      177.04       173.29        82.85         5.46        19.86        67.46 
TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MJ 
       31.40        46.32        30.21        53.16        35.61         2.73 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LX TCGA-C5-A2LY 
        2.43        40.93         3.58        44.22        16.14        78.35 
TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CJ 
       38.43         0.82        52.01        18.02        17.85       101.82 
TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UE TCGA-C5-A7UH TCGA-C5-A7X3 
      134.33        15.48         9.67        85.55        60.69         9.34 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
       58.88        36.76         2.66       117.99       118.65        22.98 
TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ 
       16.83        16.18         8.28         0.76         0.26         1.74 
TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A43B 
        1.32         0.82         0.62         1.18        14.50         1.81 
TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD 
       12.66        12.82         0.26         1.48        13.91         0.69 
TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2H0 TCGA-EK-A2IP 
       14.99        14.96         0.62         0.39        45.96         6.64 
TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE 
        0.53         0.59         0.07         4.04         0.03         0.36 
TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN 
       23.70         2.24         0.07         0.10         0.10         0.03 
TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M 
       20.35         7.92         6.94        14.70         4.47         6.12 
TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ 
        1.22        23.84         0.92         2.17         0.66         1.02 
TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J 
        1.45         1.58         1.48         0.82         3.52         1.35 
TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 
        1.32         1.97        25.41        20.78        14.93       147.39 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LI TCGA-IR-A3LK 
      137.16        66.81       117.40        96.95        81.96        26.56 
TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-MU-A51Y TCGA-MU-A5YI 
       36.36        16.64         0.10         0.89        13.87         0.03 
TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DV 
       29.72         0.07         4.34         5.85         3.39         3.72 
TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        5.75         6.25         3.88        11.67        93.99 

  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
              0.07               0.03 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             87.75             177.04 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
            15.845             11.440 
[1] "0.1 - 87.8 (15.8)"  "0.0 - 177.0 (11.4)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D67V2, continuous
                    vv
clus                 T1 T2+T3+T4
  15Q LOSS MUTATED   10        5
  15Q LOSS WILD-TYPE 71       27
D67V3, multiclass
          clus
vv         15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  T1                     10                 71
  T2+T3+T4                5                 27
D67V4, binary
                    cls
clus                  0  1
  15Q LOSS MUTATED   11  4
  15Q LOSS WILD-TYPE 62 32
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED     11    4
  15Q LOSS WILD-TYPE   62   32
   clus
vv  15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  0               11                 62
  1                4                 32
                    vv
clus                 M0 M1 MX
  15Q LOSS MUTATED    7  1  8
  15Q LOSS WILD-TYPE 54  2 45
D67V5, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  M0                7                 54
  M1                1                  2
  MX                8                 45
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  15Q LOSS MUTATED               1                               16
  15Q LOSS WILD-TYPE             1                              108
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  15Q LOSS MUTATED                                               0
  15Q LOSS WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  15Q LOSS MUTATED                                     2
  15Q LOSS WILD-TYPE                                  14
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  15Q LOSS MUTATED                                           0
  15Q LOSS WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  15Q LOSS MUTATED                                              1
  15Q LOSS WILD-TYPE                                            2
D67V6, multiclass
D67V7, binary
                    cls
clus                   0   1
  15Q LOSS MUTATED     3  17
  15Q LOSS WILD-TYPE  22 108
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED      3   17
  15Q LOSS WILD-TYPE   22  108
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  NO                 3                 22
  YES               17                108
D67V8, continuous
D67V9, continuous

Clustering(68) Variable = 16P LOSS MUTATION ANALYSIS
D68V1, survival
                    sevent
clus2                  0   1
  16P LOSS MUTATED     9   4
  16P LOSS WILD-TYPE 106  24
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                13                130 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                 4                 24 
$`16P LOSS MUTATED`
TCGA-C5-A1BL TCGA-C5-A1M9 TCGA-C5-A1MJ TCGA-C5-A3HE TCGA-C5-A7UC TCGA-EA-A43B 
      173.29        35.01         2.73        18.02        17.19         1.81 
TCGA-EK-A2PG TCGA-EK-A2RJ TCGA-EK-A2RM TCGA-FU-A3TX TCGA-HM-A6W2 TCGA-IR-A3LB 
        0.53         1.18         2.24         1.48         4.11        66.81 
TCGA-IR-A3LF 
       96.95 

$`16P LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 
      144.16       177.04        82.85         5.46        19.86        67.46 
TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MI 
       31.40        46.32        30.21        53.16        38.99        35.61 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LX 
        2.43        40.93         3.58        44.22        73.45        16.14 
TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HF TCGA-C5-A7CH 
       78.35        38.43         0.82        52.01        17.85        25.35 
TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UE TCGA-C5-A7UH 
      101.82       134.33        15.48         9.67        85.55        60.69 
TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM 
        9.34        87.75        58.88        36.76         2.66       117.99 
TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI 
      118.65        22.98        16.83        16.18         7.33         8.28 
TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
        0.76         0.26         1.74         1.32         0.82         0.62 
TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E 
        1.18        14.50        14.50        12.66        12.82         0.26 
TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX 
        1.48        13.91         0.69        14.99        14.96         0.62 
TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2R7 TCGA-EK-A2RB 
        0.39        12.59        45.96         6.64         0.59         0.07 
TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RL TCGA-EK-A2RN TCGA-EK-A2RO 
        4.04         0.03         0.36        23.70         0.10         0.07 
TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 
        0.10         0.10         0.03        20.35         7.92         6.94 
TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG 
       14.70         4.47         6.12         1.22        23.84         0.92 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3WB 
        2.17         0.66         1.02         1.45         1.58         0.82 
TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ 
        3.52         1.35         1.32         1.97        25.41        21.67 
TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LC TCGA-IR-A3LH 
       20.78        14.93       147.39       137.16       117.40        78.71 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW 
       81.96        26.56        36.36        16.64         0.10         0.89 
TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
        0.07        13.87         0.03        29.72         0.07         4.34 
TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW 
        3.72         3.45         5.85         3.39         3.72         5.75 
TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        6.25         3.88        11.67        93.99 

  16P LOSS MUTATED 16P LOSS WILD-TYPE 
              0.53               0.03 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
            173.29             177.04 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
             4.110             12.625 
[1] "0.5 - 173.3 (4.1)"  "0.0 - 177.0 (12.6)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D68V2, continuous
                    vv
clus                 T1 T2+T3+T4
  16P LOSS MUTATED   10        2
  16P LOSS WILD-TYPE 71       30
D68V3, multiclass
          clus
vv         16P LOSS MUTATED 16P LOSS WILD-TYPE
  T1                     10                 71
  T2+T3+T4                2                 30
D68V4, binary
                    cls
clus                  0  1
  16P LOSS MUTATED   10  2
  16P LOSS WILD-TYPE 63 34
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED     10    2
  16P LOSS WILD-TYPE   63   34
   clus
vv  16P LOSS MUTATED 16P LOSS WILD-TYPE
  0               10                 63
  1                2                 34
                    vv
clus                 M0 M1 MX
  16P LOSS MUTATED    9  1  2
  16P LOSS WILD-TYPE 52  2 51
D68V5, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  M0                9                 52
  M1                1                  2
  MX                2                 51
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  16P LOSS MUTATED               1                               11
  16P LOSS WILD-TYPE             1                              113
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  16P LOSS MUTATED                                               1
  16P LOSS WILD-TYPE                                             3
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  16P LOSS MUTATED                                     3
  16P LOSS WILD-TYPE                                  13
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  16P LOSS MUTATED                                           0
  16P LOSS WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  16P LOSS MUTATED                                              0
  16P LOSS WILD-TYPE                                            3
D68V6, multiclass
D68V7, binary
                    cls
clus                   0   1
  16P LOSS MUTATED     2  14
  16P LOSS WILD-TYPE  23 111
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      2   14
  16P LOSS WILD-TYPE   23  111
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  NO                 2                 23
  YES               14                111
D68V8, continuous
D68V9, continuous

Clustering(69) Variable = 16Q LOSS MUTATION ANALYSIS
D69V1, survival
                    sevent
clus2                  0   1
  16Q LOSS MUTATED    14   3
  16Q LOSS WILD-TYPE 101  25
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                17                126 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                 3                 25 
$`16Q LOSS MUTATED`
TCGA-C5-A1BL TCGA-C5-A1M9 TCGA-C5-A1MJ TCGA-C5-A2LS TCGA-C5-A2LX TCGA-C5-A2M1 
      173.29        35.01         2.73        44.22        16.14        38.43 
TCGA-C5-A3HE TCGA-DS-A7WH TCGA-EA-A43B TCGA-EK-A2PG TCGA-EK-A2RJ TCGA-EX-A1H6 
       18.02         7.33         1.81         0.53         1.18         7.92 
TCGA-FU-A3TX TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LF TCGA-MY-A5BF 
        1.48       137.16        66.81        96.95         4.34 

$`16Q LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 
      144.16       177.04        82.85         5.46        19.86        67.46 
TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MI 
       31.40        46.32        30.21        53.16        38.99        35.61 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LV TCGA-C5-A2LY TCGA-C5-A2M2 
        2.43        40.93         3.58        73.45        78.35         0.82 
TCGA-C5-A3HD TCGA-C5-A3HF TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL 
       52.01        17.85        25.35       101.82       134.33        15.48 
TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZL 
        9.67        17.19        85.55        60.69         9.34        87.75 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
       58.88        36.76         2.66       117.99       118.65        22.98 
TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ 
       16.83        16.18         8.28         0.76         0.26         1.74 
TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A439 
        1.32         0.82         0.62         1.18        14.50        14.50 
TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD 
       12.66        12.82         0.26         1.48        13.91         0.69 
TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 
       14.99        14.96         0.62         0.39        12.59        45.96 
TCGA-EK-A2IP TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE 
        6.64         0.59         0.07         4.04         0.03         0.36 
TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK 
       23.70         2.24         0.10         0.07         0.10         0.10 
TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M 
        0.03        20.35         6.94        14.70         4.47         6.12 
TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ 
        1.22        23.84         0.92         2.17         0.66         1.02 
TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G 
        1.45         1.58         0.82         3.52         1.35         1.32 
TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 
        1.97        25.41        21.67        20.78        14.93         4.11 
TCGA-IR-A3L7 TCGA-IR-A3LC TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL 
      147.39       117.40        78.71        81.96        26.56        36.36 
TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI 
       16.64         0.10         0.89         0.07        13.87         0.03 
TCGA-MY-A5BD TCGA-MY-A5BE TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DT 
       29.72         0.07         3.72         3.45         5.85         3.39 
TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        3.72         5.75         6.25         3.88        11.67        93.99 

  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
              0.53               0.03 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
            173.29             177.04 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
             16.14              12.13 
[1] "0.5 - 173.3 (16.1)" "0.0 - 177.0 (12.1)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D69V2, continuous
                    vv
clus                 T1 T2+T3+T4
  16Q LOSS MUTATED   14        3
  16Q LOSS WILD-TYPE 67       29
D69V3, multiclass
          clus
vv         16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  T1                     14                 67
  T2+T3+T4                3                 29
D69V4, binary
                    cls
clus                  0  1
  16Q LOSS MUTATED   14  3
  16Q LOSS WILD-TYPE 59 33
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED     14    3
  16Q LOSS WILD-TYPE   59   33
   clus
vv  16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  0               14                 59
  1                3                 33
                    vv
clus                 M0 M1 MX
  16Q LOSS MUTATED   10  0  7
  16Q LOSS WILD-TYPE 51  3 46
D69V5, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  M0               10                 51
  M1                0                  3
  MX                7                 46
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  16Q LOSS MUTATED               0                               11
  16Q LOSS WILD-TYPE             2                              113
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  16Q LOSS MUTATED                                               2
  16Q LOSS WILD-TYPE                                             2
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  16Q LOSS MUTATED                                     7
  16Q LOSS WILD-TYPE                                   9
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  16Q LOSS MUTATED                                           1
  16Q LOSS WILD-TYPE                                         0
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  16Q LOSS MUTATED                                              0
  16Q LOSS WILD-TYPE                                            3
D69V6, multiclass
D69V7, binary
                    cls
clus                   0   1
  16Q LOSS MUTATED     3  18
  16Q LOSS WILD-TYPE  22 107
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      3   18
  16Q LOSS WILD-TYPE   22  107
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  NO                 3                 22
  YES               18                107
D69V8, continuous
D69V9, continuous

Clustering(70) Variable = 17P LOSS MUTATION ANALYSIS
D70V1, survival
                    sevent
clus2                 0  1
  17P LOSS MUTATED   34 11
  17P LOSS WILD-TYPE 81 17
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                45                 98 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                11                 17 
$`17P LOSS MUTATED`
TCGA-C5-A1BE TCGA-C5-A1BJ TCGA-C5-A1BL TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 
       68.84       144.16       173.29         5.46        19.86        67.46 
TCGA-C5-A1MH TCGA-C5-A1MN TCGA-C5-A2LX TCGA-C5-A2M1 TCGA-C5-A7CL TCGA-C5-A7UC 
       38.99        40.93        16.14        38.43        15.48        17.19 
TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VN TCGA-EA-A1QT 
        9.34        87.75        36.76         2.66       118.65         0.26 
TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX 
       14.50         1.81        12.66        14.99        14.96         0.62 
TCGA-EA-A78R TCGA-EK-A2H0 TCGA-EK-A2PG TCGA-EK-A2RD TCGA-EK-A2RJ TCGA-EK-A2RM 
        0.39        45.96         0.53         0.03         1.18         2.24 
TCGA-EK-A2RN TCGA-EK-A3GJ TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-EX-A69M TCGA-FU-A3NI 
        0.10         0.10        20.35         6.94         6.12         1.45 
TCGA-IR-A3LH TCGA-IR-A3LK TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-MU-A5YI 
       78.71        26.56        16.64         0.10         0.89         0.03 
TCGA-Q1-A5R2 TCGA-Q1-A6DT TCGA-RA-A741 
        3.45         3.39         3.88 

$`17P LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BK 
       49.48        57.04        11.44        18.74        36.56       177.04 
TCGA-C5-A1BM TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF 
       82.85        31.40        46.32        30.21        35.01        53.16 
TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV 
       35.61         2.73         2.43         3.58        44.22        73.45 
TCGA-C5-A2LY TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CH 
       78.35         0.82        52.01        18.02        17.85        25.35 
TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CM TCGA-C5-A7UE TCGA-C5-A7UH TCGA-DR-A0ZM 
      101.82       134.33         9.67        85.55        60.69        58.88 
TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI 
      117.99        22.98        16.83        16.18         7.33         8.28 
TCGA-EA-A1QS TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE 
        0.76         1.74         1.32         0.82         0.62         1.18 
TCGA-EA-A3Y4 TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD 
       14.50        12.82         0.26         1.48        13.91         0.69 
TCGA-EK-A2GZ TCGA-EK-A2IP TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RE 
       12.59         6.64         0.59         0.07         4.04         0.36 
TCGA-EK-A2RL TCGA-EK-A2RO TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H6 TCGA-EX-A449 
       23.70         0.07         0.10         0.03         7.92        14.70 
TCGA-EX-A69L TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY 
        4.47         1.22        23.84         0.92         2.17         0.66 
TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J 
        1.02         1.58         1.48         0.82         3.52         1.35 
TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 
        1.32         1.97        25.41        21.67        20.78        14.93 
TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF 
        4.11       147.39       137.16        66.81       117.40        96.95 
TCGA-IR-A3LI TCGA-IR-A3LL TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MY-A5BD TCGA-MY-A5BE 
       81.96        36.36         0.07        13.87        29.72         0.07 
TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R3 TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R 
        4.34         3.72         5.85         3.72         5.75         6.25 
TCGA-UC-A7PD TCGA-UC-A7PF 
       11.67        93.99 

  17P LOSS MUTATED 17P LOSS WILD-TYPE 
              0.03               0.03 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
            173.29             177.04 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
             12.66              12.13 
[1] "0.0 - 173.3 (12.7)" "0.0 - 177.0 (12.1)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D70V2, continuous
                    vv
clus                 T1 T2+T3+T4
  17P LOSS MUTATED   24        9
  17P LOSS WILD-TYPE 57       23
D70V3, multiclass
          clus
vv         17P LOSS MUTATED 17P LOSS WILD-TYPE
  T1                     24                 57
  T2+T3+T4                9                 23
D70V4, binary
                    cls
clus                  0  1
  17P LOSS MUTATED   19 10
  17P LOSS WILD-TYPE 54 26
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     19   10
  17P LOSS WILD-TYPE   54   26
   clus
vv  17P LOSS MUTATED 17P LOSS WILD-TYPE
  0               19                 54
  1               10                 26
                    vv
clus                 M0 M1 MX
  17P LOSS MUTATED   21  0 13
  17P LOSS WILD-TYPE 40  3 40
D70V5, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  M0               21                 40
  M1                0                  3
  MX               13                 40
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  17P LOSS MUTATED               0                               45
  17P LOSS WILD-TYPE             2                               79
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  17P LOSS MUTATED                                               0
  17P LOSS WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  17P LOSS MUTATED                                     2
  17P LOSS WILD-TYPE                                  14
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  17P LOSS MUTATED                                           0
  17P LOSS WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  17P LOSS MUTATED                                              0
  17P LOSS WILD-TYPE                                            3
D70V6, multiclass
D70V7, binary
                    cls
clus                  0  1
  17P LOSS MUTATED    9 38
  17P LOSS WILD-TYPE 16 87
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED      9   38
  17P LOSS WILD-TYPE   16   87
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  NO                 9                 16
  YES               38                 87
D70V8, continuous
D70V9, continuous

Clustering(71) Variable = 17Q LOSS MUTATION ANALYSIS
D71V1, survival
                    sevent
clus2                  0   1
  17Q LOSS MUTATED    10   5
  17Q LOSS WILD-TYPE 105  23
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                15                128 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                 5                 23 
$`17Q LOSS MUTATED`
TCGA-C5-A1MH TCGA-C5-A1MN TCGA-C5-A7UC TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DS-A0VK 
       38.99        40.93        17.19        60.69         9.34        36.76 
TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A43B TCGA-EK-A2PG TCGA-EK-A2RD TCGA-EK-A2RJ 
      118.65         0.26         1.81         0.53         0.03         1.18 
TCGA-EK-A2RN TCGA-EX-A69M TCGA-JW-A5VI 
        0.10         6.12        16.64 

$`17Q LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ 
      144.16       177.04       173.29        82.85         5.46        19.86 
TCGA-C5-A1M5 TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF 
       67.46        31.40        46.32        30.21        35.01        53.16 
TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV 
       35.61         2.73         2.43         3.58        44.22        73.45 
TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE 
       16.14        78.35        38.43         0.82        52.01        18.02 
TCGA-C5-A3HF TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM 
       17.85        25.35       101.82       134.33        15.48         9.67 
TCGA-C5-A7UE TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A3LQ 
       85.55        87.75        58.88         2.66       117.99        22.98 
TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A3HQ 
       16.83        16.18         7.33         8.28         0.76         1.74 
TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A439 
        1.32         0.82         0.62         1.18        14.50        14.50 
TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD 
       12.66        12.82         0.26         1.48        13.91         0.69 
TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 
       14.99        14.96         0.62         0.39        12.59        45.96 
TCGA-EK-A2IP TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RE TCGA-EK-A2RL 
        6.64         0.59         0.07         4.04         0.36        23.70 
TCGA-EK-A2RM TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 
        2.24         0.07         0.10         0.10         0.03        20.35 
TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-FU-A23K TCGA-FU-A23L 
        7.92         6.94        14.70         4.47         1.22        23.84 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ 
        0.92         2.17         0.66         1.02         1.45         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV 
        1.48         0.82         3.52         1.35         1.32         1.97 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 
       25.41        21.67        20.78        14.93         4.11       147.39 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI 
      137.16        66.81       117.40        96.95        78.71        81.96 
TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y 
       26.56        36.36         0.10         0.89         0.07        13.87 
TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 
        0.03        29.72         0.07         4.34         3.72         3.45 
TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 
        5.85         3.39         3.72         5.75         6.25         3.88 
TCGA-UC-A7PD TCGA-UC-A7PF 
       11.67        93.99 

  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              0.03               0.03 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
            118.65             177.04 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             9.340             12.625 
[1] "0.0 - 118.7 (9.3)"  "0.0 - 177.0 (12.6)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
[1] "hr=" "2.1"
D71V2, continuous
                    vv
clus                 T1 T2+T3+T4
  17Q LOSS MUTATED    9        2
  17Q LOSS WILD-TYPE 72       30
D71V3, multiclass
          clus
vv         17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  T1                      9                 72
  T2+T3+T4                2                 30
D71V4, binary
                    cls
clus                  0  1
  17Q LOSS MUTATED    8  2
  17Q LOSS WILD-TYPE 65 34
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      8    2
  17Q LOSS WILD-TYPE   65   34
   clus
vv  17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  0                8                 65
  1                2                 34
                    vv
clus                 M0 M1 MX
  17Q LOSS MUTATED    6  0  5
  17Q LOSS WILD-TYPE 55  3 48
D71V5, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  M0                6                 55
  M1                0                  3
  MX                5                 48
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  17Q LOSS MUTATED               0                               16
  17Q LOSS WILD-TYPE             2                              108
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  17Q LOSS MUTATED                                               0
  17Q LOSS WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  17Q LOSS MUTATED                                     0
  17Q LOSS WILD-TYPE                                  16
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  17Q LOSS MUTATED                                           0
  17Q LOSS WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  17Q LOSS MUTATED                                              0
  17Q LOSS WILD-TYPE                                            3
D71V6, multiclass
D71V7, binary
                    cls
clus                   0   1
  17Q LOSS MUTATED     3  13
  17Q LOSS WILD-TYPE  22 112
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      3   13
  17Q LOSS WILD-TYPE   22  112
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  NO                 3                 22
  YES               13                112
D71V8, continuous
D71V9, continuous

Clustering(72) Variable = 18P LOSS MUTATION ANALYSIS
D72V1, survival
                    sevent
clus2                 0  1
  18P LOSS MUTATED   20  6
  18P LOSS WILD-TYPE 95 22
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                26                117 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                 6                 22 
$`18P LOSS MUTATED`
TCGA-C5-A1BJ TCGA-C5-A1M6 TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MN TCGA-C5-A2LV 
      144.16        31.40        35.61         2.73        40.93        73.45 
TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A7CH TCGA-DS-A0VN TCGA-EA-A1QS TCGA-EA-A1QT 
       78.35        38.43        25.35       118.65         0.76         0.26 
TCGA-EA-A43B TCGA-EK-A2GZ TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2RM TCGA-EX-A1H6 
        1.81        12.59         6.64         0.53         2.24         7.92 
TCGA-EX-A69L TCGA-FU-A3EO TCGA-HM-A3JJ TCGA-JW-A5VI TCGA-LP-A4AX TCGA-Q1-A5R1 
        4.47         2.17        21.67        16.64         0.07         3.72 
TCGA-Q1-A5R2 TCGA-UC-A7PD 
        3.45        11.67 

$`18P LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 
      177.04       173.29        82.85         5.46        19.86        67.46 
TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MK 
       46.32        30.21        35.01        53.16        38.99         2.43 
TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LX TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE 
        3.58        44.22        16.14         0.82        52.01        18.02 
TCGA-C5-A3HF TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC 
       17.85       101.82       134.33        15.48         9.67        17.19 
TCGA-C5-A7UE TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK 
       85.55        60.69         9.34        87.75        58.88        36.76 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH 
        2.66       117.99        22.98        16.83        16.18         7.33 
TCGA-DS-A7WI TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE 
        8.28         1.74         1.32         0.82         0.62         1.18 
TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO 
       14.50        14.50        12.66        12.82         0.26         1.48 
TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R 
       13.91         0.69        14.99        14.96         0.62         0.39 
TCGA-EK-A2H0 TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE 
       45.96         0.59         0.07         4.04         0.03         0.36 
TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK 
        1.18        23.70         0.10         0.07         0.10         0.10 
TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69M TCGA-FU-A23K 
        0.03        20.35         6.94        14.70         6.12         1.22 
TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ 
       23.84         0.92         0.66         1.02         1.45         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV 
        1.48         0.82         3.52         1.35         1.32         1.97 
TCGA-HG-A2PA TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA 
       25.41        20.78        14.93         4.11       147.39       137.16 
TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK 
       66.81       117.40        96.95        78.71        81.96        26.56 
TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD 
       36.36         0.10         0.89        13.87         0.03        29.72 
TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW 
        0.07         4.34         5.85         3.39         3.72         5.75 
TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PF 
        6.25         3.88        93.99 

  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              0.07               0.03 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
            144.16             177.04 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
             9.795             12.820 
[1] "0.1 - 144.2 (9.8)"  "0.0 - 177.0 (12.8)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D72V2, continuous
                    vv
clus                 T1 T2+T3+T4
  18P LOSS MUTATED   16        2
  18P LOSS WILD-TYPE 65       30
D72V3, multiclass
          clus
vv         18P LOSS MUTATED 18P LOSS WILD-TYPE
  T1                     16                 65
  T2+T3+T4                2                 30
D72V4, binary
                    cls
clus                  0  1
  18P LOSS MUTATED   14  3
  18P LOSS WILD-TYPE 59 33
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED     14    3
  18P LOSS WILD-TYPE   59   33
   clus
vv  18P LOSS MUTATED 18P LOSS WILD-TYPE
  0               14                 59
  1                3                 33
                    vv
clus                 M0 M1 MX
  18P LOSS MUTATED    9  0 10
  18P LOSS WILD-TYPE 52  3 43
D72V5, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  M0                9                 52
  M1                0                  3
  MX               10                 43
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  18P LOSS MUTATED               0                               22
  18P LOSS WILD-TYPE             2                              102
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  18P LOSS MUTATED                                               0
  18P LOSS WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  18P LOSS MUTATED                                     5
  18P LOSS WILD-TYPE                                  11
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  18P LOSS MUTATED                                           0
  18P LOSS WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  18P LOSS MUTATED                                              1
  18P LOSS WILD-TYPE                                            2
D72V6, multiclass
D72V7, binary
                    cls
clus                   0   1
  18P LOSS MUTATED     7  21
  18P LOSS WILD-TYPE  18 104
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED      7   21
  18P LOSS WILD-TYPE   18  104
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  NO                 7                 18
  YES               21                104
D72V8, continuous
D72V9, continuous

Clustering(73) Variable = 18Q LOSS MUTATION ANALYSIS
D73V1, survival
                    sevent
clus2                 0  1
  18Q LOSS MUTATED   26  9
  18Q LOSS WILD-TYPE 89 19
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                35                108 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                 9                 19 
$`18Q LOSS MUTATED`
TCGA-C5-A1M6 TCGA-C5-A1M9 TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MN TCGA-C5-A2LY 
       31.40        35.01        35.61         2.73        40.93        78.35 
TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A7CH TCGA-C5-A7UC TCGA-DR-A0ZL TCGA-DS-A0VN 
       38.43         0.82        25.35        17.19        87.75       118.65 
TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A43B TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP 
        0.76         0.26         1.81        12.59        45.96         6.64 
TCGA-EK-A2PG TCGA-EK-A2RM TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-FU-A3EO TCGA-HM-A3JJ 
        0.53         2.24         7.92         6.94         2.17        21.67 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LH TCGA-JW-A5VI TCGA-LP-A4AW TCGA-LP-A4AX 
      137.16        66.81        78.71        16.64         0.89         0.07 
TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A6DT TCGA-RA-A741 TCGA-UC-A7PD 
        3.72         3.45         3.39         3.88        11.67 

$`18Q LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ 
      144.16       177.04       173.29        82.85         5.46        19.86 
TCGA-C5-A1M5 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MK 
       67.46        46.32        30.21        53.16        38.99         2.43 
TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A3HD TCGA-C5-A3HE 
        3.58        44.22        73.45        16.14        52.01        18.02 
TCGA-C5-A3HF TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UE 
       17.85       101.82       134.33        15.48         9.67        85.55 
TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM 
       60.69         9.34        58.88        36.76         2.66       117.99 
TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A3HQ 
       22.98        16.83        16.18         7.33         8.28         1.74 
TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A439 
        1.32         0.82         0.62         1.18        14.50        14.50 
TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD 
       12.66        12.82         0.26         1.48        13.91         0.69 
TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2R7 TCGA-EK-A2RB 
       14.99        14.96         0.62         0.39         0.59         0.07 
TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RN 
        4.04         0.03         0.36         1.18        23.70         0.10 
TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A449 
        0.07         0.10         0.10         0.03        20.35        14.70 
TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3HY 
        4.47         6.12         1.22        23.84         0.92         0.66 
TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ 
        1.02         1.45         1.58         1.48         0.82         3.52 
TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JK TCGA-HM-A4S6 
        1.35         1.32         1.97        25.41        20.78        14.93 
TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LI TCGA-IR-A3LK 
        4.11       147.39       117.40        96.95        81.96        26.56 
TCGA-IR-A3LL TCGA-LP-A4AU TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE 
       36.36         0.10        13.87         0.03        29.72         0.07 
TCGA-MY-A5BF TCGA-Q1-A5R3 TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-UC-A7PF 
        4.34         5.85         3.72         5.75         6.25        93.99 

  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
              0.07               0.03 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
            137.16             177.04 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
             11.67              12.74 
[1] "0.1 - 137.2 (11.7)" "0.0 - 177.0 (12.7)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D73V2, continuous
                    vv
clus                 T1 T2+T3+T4
  18Q LOSS MUTATED   19        5
  18Q LOSS WILD-TYPE 62       27
D73V3, multiclass
          clus
vv         18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  T1                     19                 62
  T2+T3+T4                5                 27
D73V4, binary
                    cls
clus                  0  1
  18Q LOSS MUTATED   20  3
  18Q LOSS WILD-TYPE 53 33
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     20    3
  18Q LOSS WILD-TYPE   53   33
   clus
vv  18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  0               20                 53
  1                3                 33
                    vv
clus                 M0 M1 MX
  18Q LOSS MUTATED   16  0 10
  18Q LOSS WILD-TYPE 45  3 43
D73V5, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  M0               16                 45
  M1                0                  3
  MX               10                 43
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  18Q LOSS MUTATED               0                               28
  18Q LOSS WILD-TYPE             2                               96
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  18Q LOSS MUTATED                                               0
  18Q LOSS WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  18Q LOSS MUTATED                                     8
  18Q LOSS WILD-TYPE                                   8
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  18Q LOSS MUTATED                                           1
  18Q LOSS WILD-TYPE                                         0
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  18Q LOSS MUTATED                                              1
  18Q LOSS WILD-TYPE                                            2
D73V6, multiclass
D73V7, binary
                    cls
clus                  0  1
  18Q LOSS MUTATED    7 31
  18Q LOSS WILD-TYPE 18 94
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED      7   31
  18Q LOSS WILD-TYPE   18   94
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  NO                 7                 18
  YES               31                 94
D73V8, continuous
D73V9, continuous

Clustering(74) Variable = 19P LOSS MUTATION ANALYSIS
D74V1, survival
                    sevent
clus2                  0   1
  19P LOSS MUTATED    15   6
  19P LOSS WILD-TYPE 100  22
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                21                122 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                 6                 22 
$`19P LOSS MUTATED`
TCGA-C5-A1BN TCGA-C5-A1M6 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MJ TCGA-C5-A1MN 
        5.46        31.40        30.21        35.01         2.73        40.93 
TCGA-C5-A7X3 TCGA-DS-A0VN TCGA-EA-A1QT TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B 
        9.34       118.65         0.26        14.50        14.50         1.81 
TCGA-EK-A2IP TCGA-EK-A2RJ TCGA-EK-A3GJ TCGA-EX-A69L TCGA-FU-A23L TCGA-IR-A3LC 
        6.64         1.18         0.10         4.47        23.84       117.40 
TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-RA-A741 
        5.85         3.39         3.88 

$`19P LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BQ TCGA-C5-A1M5 
      144.16       177.04       173.29        82.85        19.86        67.46 
TCGA-C5-A1M7 TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MP 
       46.32        53.16        38.99        35.61         2.43         3.58 
TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 
       44.22        73.45        16.14        78.35        38.43         0.82 
TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CK 
       52.01        18.02        17.85        25.35       101.82       134.33 
TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7UH TCGA-DR-A0ZL 
       15.48         9.67        17.19        85.55        60.69        87.75 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-DS-A5RQ 
       58.88        36.76         2.66       117.99        22.98        16.83 
TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A3HQ TCGA-EA-A3HR 
       16.18         7.33         8.28         0.76         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E 
        0.82         0.62         1.18        12.66        12.82         0.26 
TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX 
        1.48        13.91         0.69        14.99        14.96         0.62 
TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB 
        0.39        12.59        45.96         0.53         0.59         0.07 
TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A2RN 
        4.04         0.03         0.36        23.70         2.24         0.10 
TCGA-EK-A2RO TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 
        0.07         0.10         0.03        20.35         7.92         6.94 
TCGA-EX-A449 TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY 
       14.70         6.12         1.22         0.92         2.17         0.66 
TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ 
        1.02         1.45         1.58         1.48         0.82         3.52 
TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK 
        1.35         1.32         1.97        25.41        21.67        20.78 
TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LF 
       14.93         4.11       147.39       137.16        66.81        96.95 
TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU 
       78.71        81.96        26.56        36.36        16.64         0.10 
TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE 
        0.89         0.07        13.87         0.03        29.72         0.07 
TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R 
        4.34         3.72         3.45         3.72         5.75         6.25 
TCGA-UC-A7PD TCGA-UC-A7PF 
       11.67        93.99 

  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              0.10               0.03 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
            118.65             177.04 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              6.64              12.74 
[1] "0.1 - 118.7 (6.6)"  "0.0 - 177.0 (12.7)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
[1] "hr=" "2"  
D74V2, continuous
                    vv
clus                 T1 T2+T3+T4
  19P LOSS MUTATED   11        3
  19P LOSS WILD-TYPE 70       29
D74V3, multiclass
          clus
vv         19P LOSS MUTATED 19P LOSS WILD-TYPE
  T1                     11                 70
  T2+T3+T4                3                 29
D74V4, binary
                    cls
clus                  0  1
  19P LOSS MUTATED   13  1
  19P LOSS WILD-TYPE 60 35
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED     13    1
  19P LOSS WILD-TYPE   60   35
   clus
vv  19P LOSS MUTATED 19P LOSS WILD-TYPE
  0               13                 60
  1                1                 35
                    vv
clus                 M0 M1 MX
  19P LOSS MUTATED    8  0  7
  19P LOSS WILD-TYPE 53  3 46
D74V5, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  M0                8                 53
  M1                0                  3
  MX                7                 46
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  19P LOSS MUTATED               0                               22
  19P LOSS WILD-TYPE             2                              102
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  19P LOSS MUTATED                                               0
  19P LOSS WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  19P LOSS MUTATED                                     3
  19P LOSS WILD-TYPE                                  13
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  19P LOSS MUTATED                                           0
  19P LOSS WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  19P LOSS MUTATED                                              0
  19P LOSS WILD-TYPE                                            3
D74V6, multiclass
D74V7, binary
                    cls
clus                   0   1
  19P LOSS MUTATED     6  19
  19P LOSS WILD-TYPE  19 106
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      6   19
  19P LOSS WILD-TYPE   19  106
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  NO                 6                 19
  YES               19                106
D74V8, continuous
D74V9, continuous

Clustering(75) Variable = 19Q LOSS MUTATION ANALYSIS
D75V1, survival
                    sevent
clus2                  0   1
  19Q LOSS MUTATED     8   3
  19Q LOSS WILD-TYPE 107  25
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                11                132 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                 3                 25 
$`19Q LOSS MUTATED`
TCGA-C5-A1M6 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MJ TCGA-DS-A0VN TCGA-EA-A1QT 
       31.40        30.21        35.01         2.73       118.65         0.26 
TCGA-EK-A2IP TCGA-EK-A3GJ TCGA-FU-A23L TCGA-IR-A3LC TCGA-Q1-A6DT 
        6.64         0.10        23.84       117.40         3.39 

$`19Q LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ 
      144.16       177.04       173.29        82.85         5.46        19.86 
TCGA-C5-A1M5 TCGA-C5-A1M7 TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A1MK 
       67.46        46.32        53.16        38.99        35.61         2.43 
TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2LY 
       40.93         3.58        44.22        73.45        16.14        78.35 
TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CH 
       38.43         0.82        52.01        18.02        17.85        25.35 
TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE 
      101.82       134.33        15.48         9.67        17.19        85.55 
TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL 
       60.69         9.34        87.75        58.88        36.76         2.66 
TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI 
      117.99        22.98        16.83        16.18         7.33         8.28 
TCGA-EA-A1QS TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE 
        0.76         1.74         1.32         0.82         0.62         1.18 
TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E 
       14.50        14.50         1.81        12.66        12.82         0.26 
TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX 
        1.48        13.91         0.69        14.99        14.96         0.62 
TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB 
        0.39        12.59        45.96         0.53         0.59         0.07 
TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RM 
        4.04         0.03         0.36         1.18        23.70         2.24 
TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 
        0.10         0.07         0.10         0.03        20.35         7.92 
TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A2QG 
        6.94        14.70         4.47         6.12         1.22         0.92 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX 
        2.17         0.66         1.02         1.45         1.58         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA 
        0.82         3.52         1.35         1.32         1.97        25.41 
TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA 
       21.67        20.78        14.93         4.11       147.39       137.16 
TCGA-IR-A3LB TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL 
       66.81        96.95        78.71        81.96        26.56        36.36 
TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI 
       16.64         0.10         0.89         0.07        13.87         0.03 
TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 
       29.72         0.07         4.34         3.72         3.45         5.85 
TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        3.72         5.75         6.25         3.88        11.67        93.99 

  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              0.10               0.03 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
            118.65             177.04 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             23.84              12.13 
[1] "0.1 - 118.7 (23.8)" "0.0 - 177.0 (12.1)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D75V2, continuous
                    vv
clus                 T1 T2+T3+T4
  19Q LOSS MUTATED    7        2
  19Q LOSS WILD-TYPE 74       30
D75V3, multiclass
          clus
vv         19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  T1                      7                 74
  T2+T3+T4                2                 30
D75V4, binary
                    cls
clus                  0  1
  19Q LOSS MUTATED    8  1
  19Q LOSS WILD-TYPE 65 35
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      8    1
  19Q LOSS WILD-TYPE   65   35
   clus
vv  19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  0                8                 65
  1                1                 35
                    vv
clus                 M0 M1 MX
  19Q LOSS MUTATED    4  0  5
  19Q LOSS WILD-TYPE 57  3 48
D75V5, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  M0                4                 57
  M1                0                  3
  MX                5                 48
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  19Q LOSS MUTATED               0                                9
  19Q LOSS WILD-TYPE             2                              115
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  19Q LOSS MUTATED                                               0
  19Q LOSS WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  19Q LOSS MUTATED                                     3
  19Q LOSS WILD-TYPE                                  13
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  19Q LOSS MUTATED                                           0
  19Q LOSS WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  19Q LOSS MUTATED                                              0
  19Q LOSS WILD-TYPE                                            3
D75V6, multiclass
D75V7, binary
                    cls
clus                   0   1
  19Q LOSS MUTATED     4   8
  19Q LOSS WILD-TYPE  21 117
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      4    8
  19Q LOSS WILD-TYPE   21  117
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  NO                 4                 21
  YES                8                117
D75V8, continuous
D75V9, continuous

Clustering(76) Variable = 20P LOSS MUTATION ANALYSIS
D76V1, survival
                    sevent
clus2                  0   1
  20P LOSS MUTATED     6   2
  20P LOSS WILD-TYPE 109  26
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 8                135 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                 2                 26 
$`20P LOSS MUTATED`
TCGA-BI-A0VR TCGA-EA-A1QT TCGA-EK-A2H0 TCGA-EX-A1H6 TCGA-FU-A3HY TCGA-IR-A3LB 
       49.48         0.26        45.96         7.92         0.66        66.81 
TCGA-JW-A5VI TCGA-UC-A7PD 
       16.64        11.67 

$`20P LOSS WILD-TYPE`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BJ 
       57.04        11.44        68.84        18.74        36.56       144.16 
TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 
      177.04       173.29        82.85         5.46        19.86        67.46 
TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF TCGA-C5-A1MH 
       31.40        46.32        30.21        35.01        53.16        38.99 
TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS 
       35.61         2.73         2.43        40.93         3.58        44.22 
TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HD 
       73.45        16.14        78.35        38.43         0.82        52.01 
TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL 
       18.02        17.85        25.35       101.82       134.33        15.48 
TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZL 
        9.67        17.19        85.55        60.69         9.34        87.75 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ 
       58.88        36.76         2.66       117.99       118.65        22.98 
TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A3HQ 
       16.83        16.18         7.33         8.28         0.76         1.74 
TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A439 
        1.32         0.82         0.62         1.18        14.50        14.50 
TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 
        1.81        12.66        12.82         0.26         1.48        13.91 
TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2GZ 
        0.69        14.99        14.96         0.62         0.39        12.59 
TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD 
        6.64         0.53         0.59         0.07         4.04         0.03 
TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A2RN TCGA-EK-A2RO 
        0.36         1.18        23.70         2.24         0.10         0.07 
TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-EX-A449 
        0.10         0.10         0.03        20.35         6.94        14.70 
TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO 
        4.47         6.12         1.22        23.84         0.92         2.17 
TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ 
        1.02         1.45         1.58         1.48         0.82         3.52 
TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK 
        1.35         1.32         1.97        25.41        21.67        20.78 
TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LC TCGA-IR-A3LF 
       14.93         4.11       147.39       137.16       117.40        96.95 
TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW 
       78.71        81.96        26.56        36.36         0.10         0.89 
TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
        0.07        13.87         0.03        29.72         0.07         4.34 
TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW 
        3.72         3.45         5.85         3.39         3.72         5.75 
TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PF 
        6.25         3.88        93.99 

  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              0.26               0.03 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
             66.81             177.04 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
            14.155             12.590 
[1] "0.3 - 66.8 (14.2)"  "0.0 - 177.0 (12.6)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D76V2, continuous
                    vv
clus                 T1 T2+T3+T4
  20P LOSS MUTATED    6        2
  20P LOSS WILD-TYPE 75       30
D76V3, multiclass
          clus
vv         20P LOSS MUTATED 20P LOSS WILD-TYPE
  T1                      6                 75
  T2+T3+T4                2                 30
D76V4, binary
                    cls
clus                  0  1
  20P LOSS MUTATED    5  2
  20P LOSS WILD-TYPE 68 34
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      5    2
  20P LOSS WILD-TYPE   68   34
   clus
vv  20P LOSS MUTATED 20P LOSS WILD-TYPE
  0                5                 68
  1                2                 34
                    vv
clus                 M0 M1 MX
  20P LOSS MUTATED    5  0  3
  20P LOSS WILD-TYPE 56  3 50
D76V5, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  M0                5                 56
  M1                0                  3
  MX                3                 50
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  20P LOSS MUTATED               0                                8
  20P LOSS WILD-TYPE             2                              116
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  20P LOSS MUTATED                                               0
  20P LOSS WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  20P LOSS MUTATED                                     2
  20P LOSS WILD-TYPE                                  14
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  20P LOSS MUTATED                                           0
  20P LOSS WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  20P LOSS MUTATED                                              0
  20P LOSS WILD-TYPE                                            3
D76V6, multiclass
D76V7, binary
                    cls
clus                   0   1
  20P LOSS MUTATED     0  10
  20P LOSS WILD-TYPE  25 115
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      0   10
  20P LOSS WILD-TYPE   25  115
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  NO                 0                 25
  YES               10                115
D76V8, continuous
D76V9, continuous

Clustering(77) Variable = 20Q LOSS MUTATION ANALYSIS
D77V1, survival
                    sevent
clus2                  0   1
  20Q LOSS MUTATED     2   1
  20Q LOSS WILD-TYPE 113  27
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 3                140 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 1                 27 
$`20Q LOSS MUTATED`
TCGA-FU-A40J TCGA-HG-A2PA TCGA-UC-A7PD 
        1.35        25.41        11.67 

$`20Q LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ 
      144.16       177.04       173.29        82.85         5.46        19.86 
TCGA-C5-A1M5 TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF 
       67.46        31.40        46.32        30.21        35.01        53.16 
TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP 
       38.99        35.61         2.73         2.43        40.93         3.58 
TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 
       44.22        73.45        16.14        78.35        38.43         0.82 
TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CK 
       52.01        18.02        17.85        25.35       101.82       134.33 
TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7UH TCGA-C5-A7X3 
       15.48         9.67        17.19        85.55        60.69         9.34 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN 
       87.75        58.88        36.76         2.66       117.99       118.65 
TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS 
       22.98        16.83        16.18         7.33         8.28         0.76 
TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE 
        0.26         1.74         1.32         0.82         0.62         1.18 
TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A4BA TCGA-EA-A50E 
       14.50        14.50         1.81        12.66        12.82         0.26 
TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX 
        1.48        13.91         0.69        14.99        14.96         0.62 
TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2R7 
        0.39        12.59        45.96         6.64         0.53         0.59 
TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A2RL 
        0.07         4.04         0.03         0.36         1.18        23.70 
TCGA-EK-A2RM TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN 
        2.24         0.10         0.07         0.10         0.10         0.03 
TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M 
       20.35         7.92         6.94        14.70         4.47         6.12 
TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ 
        1.22        23.84         0.92         2.17         0.66         1.02 
TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G 
        1.45         1.58         1.48         0.82         3.52         1.32 
TCGA-FU-A5XV TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 
        1.97        21.67        20.78        14.93         4.11       147.39 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI 
      137.16        66.81       117.40        96.95        78.71        81.96 
TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW TCGA-LP-A4AX 
       26.56        36.36        16.64         0.10         0.89         0.07 
TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 
       13.87         0.03        29.72         0.07         4.34         3.72 
TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R 
        3.45         5.85         3.39         3.72         5.75         6.25 
TCGA-RA-A741 TCGA-UC-A7PF 
        3.88        93.99 

  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
              1.35               0.03 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
             25.41             177.04 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
            11.670             12.625 
[1] "1.4 - 25.4 (11.7)"  "0.0 - 177.0 (12.6)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
[1] "hr=" "3.3"
D77V2, continuous
                    vv
clus                 T1 T2+T3+T4
  20Q LOSS MUTATED    2        1
  20Q LOSS WILD-TYPE 79       31
D77V3, multiclass
          clus
vv         20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  T1                      2                 79
  T2+T3+T4                1                 31
D77V4, binary
                    cls
clus                  0  1
  20Q LOSS MUTATED    2  1
  20Q LOSS WILD-TYPE 71 35
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      2    1
  20Q LOSS WILD-TYPE   71   35
   clus
vv  20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  0                2                 71
  1                1                 35
                    vv
clus                 M0 M1 MX
  20Q LOSS MUTATED    2  0  1
  20Q LOSS WILD-TYPE 59  3 52
D77V5, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  M0                2                 59
  M1                0                  3
  MX                1                 52
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  20Q LOSS MUTATED               0                                3
  20Q LOSS WILD-TYPE             2                              121
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  20Q LOSS MUTATED                                               0
  20Q LOSS WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  20Q LOSS MUTATED                                     1
  20Q LOSS WILD-TYPE                                  15
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  20Q LOSS MUTATED                                           0
  20Q LOSS WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  20Q LOSS MUTATED                                              0
  20Q LOSS WILD-TYPE                                            3
D77V6, multiclass
D77V7, binary
                    cls
clus                   0   1
  20Q LOSS MUTATED     0   4
  20Q LOSS WILD-TYPE  25 121
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      0    4
  20Q LOSS WILD-TYPE   25  121
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  NO                 0                 25
  YES                4                121
D77V8, continuous
[1] "Remove cluster labels:" "20Q LOSS MUTATED"      
clus
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                 1                 42 
        TCGA-BI-A0VR         TCGA-C5-A1BF         TCGA-C5-A1BI 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BL         TCGA-C5-A1BN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A1BQ         TCGA-C5-A1M7         TCGA-C5-A1MF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MN 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A2M2         TCGA-C5-A3HD         TCGA-C5-A3HF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A7CJ         TCGA-C5-A7CK         TCGA-C5-A7CL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-DR-A0ZM         TCGA-DS-A5RQ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-DS-A7WF         TCGA-EX-A1H5         TCGA-FU-A2QG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3TQ 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A5XV 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-HM-A4S6         TCGA-HM-A6W2         TCGA-IR-A3L7 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LH         TCGA-JW-A5VI 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-Q1-A6DW         TCGA-RA-A741 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
D77V9, continuous

Clustering(78) Variable = 21Q LOSS MUTATION ANALYSIS
D78V1, survival
                    sevent
clus2                  0   1
  21Q LOSS MUTATED    14   5
  21Q LOSS WILD-TYPE 101  23
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                19                124 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                 5                 23 
$`21Q LOSS MUTATED`
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1M9 TCGA-C5-A1MJ TCGA-C5-A2LV TCGA-C5-A7X3 
       57.04        11.44        35.01         2.73        73.45         9.34 
TCGA-DR-A0ZL TCGA-DS-A0VL TCGA-EA-A3HR TCGA-EA-A439 TCGA-EK-A2GZ TCGA-EK-A2PG 
       87.75         2.66         1.32        14.50        12.59         0.53 
TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EX-A3L1 TCGA-FU-A23L TCGA-FU-A3NI TCGA-HM-A3JJ 
        1.18        23.70         6.94        23.84         1.45        21.67 
TCGA-HM-A6W2 
        4.11 

$`21Q LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BJ TCGA-C5-A1BK 
       49.48        68.84        18.74        36.56       144.16       177.04 
TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 TCGA-C5-A1M6 
      173.29        82.85         5.46        19.86        67.46        31.40 
TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A1MK 
       46.32        30.21        53.16        38.99        35.61         2.43 
TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 
       40.93         3.58        44.22        16.14        78.35        38.43 
TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CH TCGA-C5-A7CJ 
        0.82        52.01        18.02        17.85        25.35       101.82 
TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7UH 
      134.33        15.48         9.67        17.19        85.55        60.69 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A3LQ TCGA-DS-A5RQ 
       58.88        36.76       117.99       118.65        22.98        16.83 
TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ 
       16.18         7.33         8.28         0.76         0.26         1.74 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-EA-A44S 
        0.82         0.62         1.18        14.50         1.81        12.66 
TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE 
       12.82         0.26         1.48        13.91         0.69        14.99 
TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2R7 
       14.96         0.62         0.39        45.96         6.64         0.59 
TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RM TCGA-EK-A2RN 
        0.07         4.04         0.03         0.36         2.24         0.10 
TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 
        0.07         0.10         0.10         0.03        20.35         7.92 
TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A2QG TCGA-FU-A3EO 
       14.70         4.47         6.12         1.22         0.92         2.17 
TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ 
        0.66         1.02         1.58         1.48         0.82         3.52 
TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JK TCGA-HM-A4S6 
        1.35         1.32         1.97        25.41        20.78        14.93 
TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH 
      147.39       137.16        66.81       117.40        96.95        78.71 
TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AW 
       81.96        26.56        36.36        16.64         0.10         0.89 
TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
        0.07        13.87         0.03        29.72         0.07         4.34 
TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW 
        3.72         3.45         5.85         3.39         3.72         5.75 
TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        6.25         3.88        11.67        93.99 

  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
              0.53               0.03 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
             87.75             177.04 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
             11.44              12.74 
[1] "0.5 - 87.8 (11.4)"  "0.0 - 177.0 (12.7)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
[1] "hr=" "1.8"
D78V2, continuous
                    vv
clus                 T1 T2+T3+T4
  21Q LOSS MUTATED   10        6
  21Q LOSS WILD-TYPE 71       26
D78V3, multiclass
          clus
vv         21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  T1                     10                 71
  T2+T3+T4                6                 26
D78V4, binary
                    cls
clus                  0  1
  21Q LOSS MUTATED   10  6
  21Q LOSS WILD-TYPE 63 30
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED     10    6
  21Q LOSS WILD-TYPE   63   30
   clus
vv  21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  0               10                 63
  1                6                 30
                    vv
clus                 M0 M1 MX
  21Q LOSS MUTATED    7  1  8
  21Q LOSS WILD-TYPE 54  2 45
D78V5, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  M0                7                 54
  M1                1                  2
  MX                8                 45
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  21Q LOSS MUTATED               1                               16
  21Q LOSS WILD-TYPE             1                              108
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  21Q LOSS MUTATED                                               0
  21Q LOSS WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  21Q LOSS MUTATED                                     3
  21Q LOSS WILD-TYPE                                  13
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  21Q LOSS MUTATED                                           0
  21Q LOSS WILD-TYPE                                         1
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  21Q LOSS MUTATED                                              0
  21Q LOSS WILD-TYPE                                            3
D78V6, multiclass
D78V7, binary
                    cls
clus                   0   1
  21Q LOSS MUTATED     3  17
  21Q LOSS WILD-TYPE  22 108
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED      3   17
  21Q LOSS WILD-TYPE   22  108
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  NO                 3                 22
  YES               17                108
D78V8, continuous
[1] "Remove cluster labels:" "21Q LOSS MUTATED"      
clus
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                 2                 41 
        TCGA-BI-A0VR         TCGA-C5-A1BF         TCGA-C5-A1BI 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BL         TCGA-C5-A1BN 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A1BQ         TCGA-C5-A1M7         TCGA-C5-A1MF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MN 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LX         TCGA-C5-A2M2 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HF         TCGA-C5-A7CJ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-C5-A7CK         TCGA-C5-A7CL         TCGA-C5-A7UE 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-DR-A0ZM         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-FU-A2QG         TCGA-FU-A3EO 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FU-A3HY         TCGA-FU-A3TQ         TCGA-FU-A3WB 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-FU-A3YQ         TCGA-FU-A5XV         TCGA-HM-A4S6 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-IR-A3L7         TCGA-IR-A3LB         TCGA-IR-A3LH 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-JW-A5VI         TCGA-MU-A5YI         TCGA-Q1-A6DW 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-RA-A741         TCGA-UC-A7PD 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
D78V9, continuous

Clustering(79) Variable = 22Q LOSS MUTATION ANALYSIS
D79V1, survival
                    sevent
clus2                 0  1
  22Q LOSS MUTATED   20  8
  22Q LOSS WILD-TYPE 95 20
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                28                115 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                 8                 20 
$`22Q LOSS MUTATED`
TCGA-C5-A1BF TCGA-C5-A1BL TCGA-C5-A1BN TCGA-C5-A1M6 TCGA-C5-A1M8 TCGA-C5-A1MJ 
       18.74       173.29         5.46        31.40        30.21         2.73 
TCGA-C5-A2LX TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A7X3 TCGA-DS-A0VN TCGA-EA-A1QT 
       16.14        52.01        18.02         9.34       118.65         0.26 
TCGA-EA-A3HR TCGA-EA-A439 TCGA-EA-A44S TCGA-EK-A2GZ TCGA-EK-A2PG TCGA-EK-A2R7 
        1.32        14.50        12.66        12.59         0.53         0.59 
TCGA-EK-A2RJ TCGA-EK-A2RN TCGA-HM-A3JJ TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC 
        1.18         0.10        21.67       137.16        66.81       117.40 
TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A6DT TCGA-UC-A7PD 
        3.72         3.45         3.39        11.67 

$`22Q LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BI TCGA-C5-A1BJ 
       49.48        57.04        11.44        68.84        36.56       144.16 
TCGA-C5-A1BK TCGA-C5-A1BM TCGA-C5-A1BQ TCGA-C5-A1M5 TCGA-C5-A1M7 TCGA-C5-A1M9 
      177.04        82.85        19.86        67.46        46.32        35.01 
TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP 
       53.16        38.99        35.61         2.43        40.93         3.58 
TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LY TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HF 
       44.22        73.45        78.35        38.43         0.82        17.85 
TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC 
       25.35       101.82       134.33        15.48         9.67        17.19 
TCGA-C5-A7UE TCGA-C5-A7UH TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL 
       85.55        60.69        87.75        58.88        36.76         2.66 
TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI 
      117.99        22.98        16.83        16.18         7.33         8.28 
TCGA-EA-A1QS TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3QE TCGA-EA-A3Y4 
        0.76         1.74         0.82         0.62         1.18        14.50 
TCGA-EA-A43B TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD 
        1.81        12.82         0.26         1.48        13.91         0.69 
TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2H0 TCGA-EK-A2IP 
       14.99        14.96         0.62         0.39        45.96         6.64 
TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RL TCGA-EK-A2RM 
        0.07         4.04         0.03         0.36        23.70         2.24 
TCGA-EK-A2RO TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 
        0.07         0.10         0.10         0.03        20.35         7.92 
TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L 
        6.94        14.70         4.47         6.12         1.22        23.84 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ 
        0.92         2.17         0.66         1.02         1.45         1.58 
TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV 
        1.48         0.82         3.52         1.35         1.32         1.97 
TCGA-HG-A2PA TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LF 
       25.41        20.78        14.93         4.11       147.39        96.95 
TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU 
       78.71        81.96        26.56        36.36        16.64         0.10 
TCGA-LP-A4AW TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BD TCGA-MY-A5BE 
        0.89         0.07        13.87         0.03        29.72         0.07 
TCGA-MY-A5BF TCGA-Q1-A5R3 TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 
        4.34         5.85         3.72         5.75         6.25         3.88 
TCGA-UC-A7PF 
       93.99 

  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              0.10               0.03 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
            173.29             177.04 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
            12.625             11.440 
[1] "0.1 - 173.3 (12.6)" "0.0 - 177.0 (11.4)"
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-BI-A0VR         TCGA-BI-A0VS         TCGA-C5-A0TN 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A1BE         TCGA-C5-A1BF         TCGA-C5-A1BI 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A1BJ         TCGA-C5-A1BK         TCGA-C5-A1BL 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-C5-A1BM         TCGA-C5-A1BN         TCGA-C5-A1BQ 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A1M5         TCGA-C5-A1M6         TCGA-C5-A1M7 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A1M8         TCGA-C5-A1M9         TCGA-C5-A1MF 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A1MH         TCGA-C5-A1MI         TCGA-C5-A1MJ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-C5-A1MK         TCGA-C5-A1MN         TCGA-C5-A1MP 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A2LS         TCGA-C5-A2LV         TCGA-C5-A2LX 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-C5-A2LY         TCGA-C5-A2M1         TCGA-C5-A2M2 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A3HD         TCGA-C5-A3HE         TCGA-C5-A3HF 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A7CH         TCGA-C5-A7CJ         TCGA-C5-A7CK 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A7CL         TCGA-C5-A7CM         TCGA-C5-A7UC 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-C5-A7UE         TCGA-C5-A7UH         TCGA-C5-A7X3 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DR-A0ZL         TCGA-DR-A0ZM         TCGA-DS-A0VK 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DS-A0VL         TCGA-DS-A0VM         TCGA-DS-A0VN 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-DS-A3LQ         TCGA-DS-A5RQ         TCGA-DS-A7WF 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-DS-A7WH         TCGA-DS-A7WI         TCGA-EA-A1QS 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EA-A1QT         TCGA-EA-A3HQ         TCGA-EA-A3HR 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-EA-A3HS         TCGA-EA-A3HT         TCGA-EA-A3QE 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EA-A3Y4         TCGA-EA-A439         TCGA-EA-A43B 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-EA-A44S         TCGA-EA-A4BA         TCGA-EA-A50E 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EA-A5FO         TCGA-EA-A5O9         TCGA-EA-A5ZD 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EA-A5ZE         TCGA-EA-A5ZF         TCGA-EA-A6QX 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EA-A78R         TCGA-EK-A2GZ         TCGA-EK-A2H0 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-EK-A2IP         TCGA-EK-A2PG         TCGA-EK-A2R7 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-EK-A2RB         TCGA-EK-A2RC         TCGA-EK-A2RD 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EK-A2RE         TCGA-EK-A2RJ         TCGA-EK-A2RL 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-EK-A2RM         TCGA-EK-A2RN         TCGA-EK-A2RO 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-EK-A3GJ         TCGA-EK-A3GK         TCGA-EK-A3GN 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EX-A1H5         TCGA-EX-A1H6         TCGA-EX-A3L1 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-EX-A449         TCGA-EX-A69L         TCGA-EX-A69M 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FU-A23K         TCGA-FU-A23L         TCGA-FU-A2QG 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FU-A3EO         TCGA-FU-A3HY         TCGA-FU-A3HZ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FU-A3NI         TCGA-FU-A3TQ         TCGA-FU-A3TX 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FU-A3WB         TCGA-FU-A3YQ         TCGA-FU-A40J 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-FU-A57G         TCGA-FU-A5XV         TCGA-HG-A2PA 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HM-A3JJ         TCGA-HM-A3JK         TCGA-HM-A4S6 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-HM-A6W2         TCGA-IR-A3L7         TCGA-IR-A3LA 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-IR-A3LB         TCGA-IR-A3LC         TCGA-IR-A3LF 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-IR-A3LH         TCGA-IR-A3LI         TCGA-IR-A3LK 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-IR-A3LL         TCGA-JW-A5VI         TCGA-LP-A4AU 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-LP-A4AW         TCGA-LP-A4AX         TCGA-MU-A51Y 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-MU-A5YI         TCGA-MY-A5BD         TCGA-MY-A5BE 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-MY-A5BF         TCGA-Q1-A5R1         TCGA-Q1-A5R2 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-Q1-A5R3         TCGA-Q1-A6DT         TCGA-Q1-A6DV 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-Q1-A6DW         TCGA-Q1-A73R         TCGA-RA-A741 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-UC-A7PD         TCGA-UC-A7PF 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D79V2, continuous
                    vv
clus                 T1 T2+T3+T4
  22Q LOSS MUTATED   14        5
  22Q LOSS WILD-TYPE 67       27
D79V3, multiclass
          clus
vv         22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  T1                     14                 67
  T2+T3+T4                5                 27
D79V4, binary
                    cls
clus                  0  1
  22Q LOSS MUTATED   14  6
  22Q LOSS WILD-TYPE 59 30
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED     14    6
  22Q LOSS WILD-TYPE   59   30
   clus
vv  22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  0               14                 59
  1                6                 30
                    vv
clus                 M0 M1 MX
  22Q LOSS MUTATED   12  0 10
  22Q LOSS WILD-TYPE 49  3 43
D79V5, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  M0               12                 49
  M1                0                  3
  MX               10                 43
                    vv
clus                 ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  22Q LOSS MUTATED               0                               25
  22Q LOSS WILD-TYPE             2                               99
                    vv
clus                 ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  22Q LOSS MUTATED                                               0
  22Q LOSS WILD-TYPE                                             4
                    vv
clus                 ENDOCERVICAL TYPE OF ADENOCARCINOMA
  22Q LOSS MUTATED                                     3
  22Q LOSS WILD-TYPE                                  13
                    vv
clus                 ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  22Q LOSS MUTATED                                           1
  22Q LOSS WILD-TYPE                                         0
                    vv
clus                 MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  22Q LOSS MUTATED                                              1
  22Q LOSS WILD-TYPE                                            2
D79V6, multiclass
D79V7, binary
                    cls
clus                   0   1
  22Q LOSS MUTATED     8  22
  22Q LOSS WILD-TYPE  17 103
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED      8   22
  22Q LOSS WILD-TYPE   17  103
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  NO                 8                 17
  YES               22                103
D79V8, continuous
D79V9, continuous

Clustering(80) Variable = XQ LOSS MUTATION ANALYSIS
D80V1, survival
                   sevent
clus2                0  1
  XQ LOSS MUTATED   21  8
  XQ LOSS WILD-TYPE 94 20
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               29               114 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
                8                20 
$`XQ LOSS MUTATED`
TCGA-C5-A0TN TCGA-C5-A1BQ TCGA-C5-A1M8 TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A3HD 
       11.44        19.86        30.21         2.43        40.93        52.01 
TCGA-C5-A7CJ TCGA-C5-A7UH TCGA-DS-A0VK TCGA-DS-A0VN TCGA-DS-A7WF TCGA-EA-A1QT 
      101.82        60.69        36.76       118.65        16.18         0.26 
TCGA-EA-A3QE TCGA-EA-A43B TCGA-EA-A44S TCGA-EA-A5ZE TCGA-EK-A2RE TCGA-EK-A2RM 
        1.18         1.81        12.66        14.99         0.36         2.24 
TCGA-EK-A3GJ TCGA-EK-A3GK TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A69M TCGA-FU-A2QG 
        0.10         0.10        20.35         7.92         6.12         0.92 
TCGA-FU-A3HY TCGA-FU-A5XV TCGA-IR-A3LK TCGA-LP-A4AW TCGA-MY-A5BF 
        0.66         1.97        26.56         0.89         4.34 

$`XQ LOSS WILD-TYPE`
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BJ 
       49.48        57.04        68.84        18.74        36.56       144.16 
TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1M6 
      177.04       173.29        82.85         5.46        67.46        31.40 
TCGA-C5-A1M7 TCGA-C5-A1M9 TCGA-C5-A1MF TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A1MJ 
       46.32        35.01        53.16        38.99        35.61         2.73 
TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 
        3.58        44.22        73.45        16.14        78.35        38.43 
TCGA-C5-A2M2 TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CH TCGA-C5-A7CK TCGA-C5-A7CL 
        0.82        18.02        17.85        25.35       134.33        15.48 
TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DR-A0ZM 
        9.67        17.19        85.55         9.34        87.75        58.88 
TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WH TCGA-DS-A7WI 
        2.66       117.99        22.98        16.83         7.33         8.28 
TCGA-EA-A1QS TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3Y4 
        0.76         1.74         1.32         0.82         0.62        14.50 
TCGA-EA-A439 TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD 
       14.50        12.82         0.26         1.48        13.91         0.69 
TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP 
       14.96         0.62         0.39        12.59        45.96         6.64 
TCGA-EK-A2PG TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RJ 
        0.53         0.59         0.07         4.04         0.03         1.18 
TCGA-EK-A2RL TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GN TCGA-EX-A3L1 TCGA-EX-A449 
       23.70         0.10         0.07         0.03         6.94        14.70 
TCGA-EX-A69L TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3NI 
        4.47         1.22        23.84         2.17         1.02         1.45 
TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G 
        1.58         1.48         0.82         3.52         1.35         1.32 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 
       25.41        21.67        20.78        14.93         4.11       147.39 
TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI 
      137.16        66.81       117.40        96.95        78.71        81.96 
TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI 
       36.36        16.64         0.10         0.07        13.87         0.03 
TCGA-MY-A5BD TCGA-MY-A5BE TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DT 
       29.72         0.07         3.72         3.45         5.85         3.39 
TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
        3.72         5.75         6.25         3.88        11.67        93.99 

  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
             0.10              0.03 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
           118.65            177.04 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
            7.920            13.345 
[1] "0.1 - 118.7 (7.9)"  "0.0 - 177.0 (13.3)"
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-BI-A0VR        TCGA-BI-A0VS        TCGA-C5-A0TN        TCGA-C5-A1BE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-C5-A1BF        TCGA-C5-A1BI        TCGA-C5-A1BJ        TCGA-C5-A1BK 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-C5-A1BL        TCGA-C5-A1BM        TCGA-C5-A1BN        TCGA-C5-A1BQ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-C5-A1M5        TCGA-C5-A1M6        TCGA-C5-A1M7        TCGA-C5-A1M8 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-C5-A1M9        TCGA-C5-A1MF        TCGA-C5-A1MH        TCGA-C5-A1MI 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-C5-A1MJ        TCGA-C5-A1MK        TCGA-C5-A1MN        TCGA-C5-A1MP 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-C5-A2LS        TCGA-C5-A2LV        TCGA-C5-A2LX        TCGA-C5-A2LY 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-C5-A2M1        TCGA-C5-A2M2        TCGA-C5-A3HD        TCGA-C5-A3HE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-C5-A3HF        TCGA-C5-A7CH        TCGA-C5-A7CJ        TCGA-C5-A7CK 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-C5-A7CL        TCGA-C5-A7CM        TCGA-C5-A7UC        TCGA-C5-A7UE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-C5-A7UH        TCGA-C5-A7X3        TCGA-DR-A0ZL        TCGA-DR-A0ZM 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-DS-A0VK        TCGA-DS-A0VL        TCGA-DS-A0VM        TCGA-DS-A0VN 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-DS-A3LQ        TCGA-DS-A5RQ        TCGA-DS-A7WF        TCGA-DS-A7WH 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-DS-A7WI        TCGA-EA-A1QS        TCGA-EA-A1QT        TCGA-EA-A3HQ 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-EA-A3HR        TCGA-EA-A3HS        TCGA-EA-A3HT        TCGA-EA-A3QE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-EA-A3Y4        TCGA-EA-A439        TCGA-EA-A43B        TCGA-EA-A44S 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-EA-A4BA        TCGA-EA-A50E        TCGA-EA-A5FO        TCGA-EA-A5O9 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EA-A5ZD        TCGA-EA-A5ZE        TCGA-EA-A5ZF        TCGA-EA-A6QX 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EA-A78R        TCGA-EK-A2GZ        TCGA-EK-A2H0        TCGA-EK-A2IP 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EK-A2PG        TCGA-EK-A2R7        TCGA-EK-A2RB        TCGA-EK-A2RC 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EK-A2RD        TCGA-EK-A2RE        TCGA-EK-A2RJ        TCGA-EK-A2RL 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-EK-A2RM        TCGA-EK-A2RN        TCGA-EK-A2RO        TCGA-EK-A3GJ 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-EK-A3GK        TCGA-EK-A3GN        TCGA-EX-A1H5        TCGA-EX-A1H6 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-EX-A3L1        TCGA-EX-A449        TCGA-EX-A69L        TCGA-EX-A69M 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-FU-A23K        TCGA-FU-A23L        TCGA-FU-A2QG        TCGA-FU-A3EO 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-FU-A3HY        TCGA-FU-A3HZ        TCGA-FU-A3NI        TCGA-FU-A3TQ 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FU-A3TX        TCGA-FU-A3WB        TCGA-FU-A3YQ        TCGA-FU-A40J 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-FU-A57G        TCGA-FU-A5XV        TCGA-HG-A2PA        TCGA-HM-A3JJ 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-HM-A3JK        TCGA-HM-A4S6        TCGA-HM-A6W2        TCGA-IR-A3L7 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IR-A3LA        TCGA-IR-A3LB        TCGA-IR-A3LC        TCGA-IR-A3LF 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-IR-A3LH        TCGA-IR-A3LI        TCGA-IR-A3LK        TCGA-IR-A3LL 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-JW-A5VI        TCGA-LP-A4AU        TCGA-LP-A4AW        TCGA-LP-A4AX 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-MU-A51Y        TCGA-MU-A5YI        TCGA-MY-A5BD        TCGA-MY-A5BE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MY-A5BF        TCGA-Q1-A5R1        TCGA-Q1-A5R2        TCGA-Q1-A5R3 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-Q1-A6DT        TCGA-Q1-A6DV        TCGA-Q1-A6DW        TCGA-Q1-A73R 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-RA-A741        TCGA-UC-A7PD        TCGA-UC-A7PF 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
[1] "hr=" "2.1"
D80V2, continuous
                   vv
clus                T1 T2+T3+T4
  XQ LOSS MUTATED   19        5
  XQ LOSS WILD-TYPE 62       27
D80V3, multiclass
          clus
vv         XQ LOSS MUTATED XQ LOSS WILD-TYPE
  T1                    19                62
  T2+T3+T4               5                27
D80V4, binary
                   cls
clus                 0  1
  XQ LOSS MUTATED   17  7
  XQ LOSS WILD-TYPE 56 29
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED     17    7
  XQ LOSS WILD-TYPE   56   29
   clus
vv  XQ LOSS MUTATED XQ LOSS WILD-TYPE
  0              17                56
  1               7                29
                   vv
clus                M0 M1 MX
  XQ LOSS MUTATED   10  0 12
  XQ LOSS WILD-TYPE 51  3 41
D80V5, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  M0              10                51
  M1               0                 3
  MX              12                41
                   vv
clus                ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  XQ LOSS MUTATED               1                               28
  XQ LOSS WILD-TYPE             1                               96
                   vv
clus                ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  XQ LOSS MUTATED                                               0
  XQ LOSS WILD-TYPE                                             4
                   vv
clus                ENDOCERVICAL TYPE OF ADENOCARCINOMA
  XQ LOSS MUTATED                                     2
  XQ LOSS WILD-TYPE                                  14
                   vv
clus                ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  XQ LOSS MUTATED                                           0
  XQ LOSS WILD-TYPE                                         1
                   vv
clus                MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  XQ LOSS MUTATED                                              0
  XQ LOSS WILD-TYPE                                            3
D80V6, multiclass
D80V7, binary
                   cls
clus                  0   1
  XQ LOSS MUTATED     6  25
  XQ LOSS WILD-TYPE  19 100
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      6   25
  XQ LOSS WILD-TYPE   19  100
     clus
vv    XQ LOSS MUTATED XQ LOSS WILD-TYPE
  NO                6                19
  YES              25               100
D80V8, continuous
D80V9, continuous
> q(save="no")
