
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/CESC-TP/8282694/CESC-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/CESC-TP/8142755/CESC-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=.05", "-cQ=0.25", "-MF=ALL", "-oT=CESC-TP", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=CESC-TP"
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/CESC-TP/8142755/CESC-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/CESC-TP/8282694/CESC-TP.mergedcluster.txt"

nPatients in clinical file=160, in cluster file=211, common to both=160
[1]   8 160
[1] "CN_CNMF"
[1] 3
 1  2  3 
46 34 70 
 1  2  3 
46 34 70 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3  4  5  6  7 
29 21 16 30 25 25 14 
 1  2  3  4  5  6  7 
29 21 16 30 25 25 14 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3  4 
55 26 35 30 
 1  2  3  4 
55 26 35 30 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
 1  2  3 
14 97 35 
 1  2  3 
14 97 35 
[1] "MIRSEQ_CNMF"
[1] 3
 1  2  3 
63 45 50 
 1  2  3 
63 45 50 
[1] "MIRSEQ_CHIERARCHICAL"
[1] 3
 1  2  3 
63 50 45 
 1  2  3 
63 50 45 
[1] "MIRSEQ_MATURE_CNMF"
[1] 3
 1  2  3 
63 45 50 
 1  2  3 
63 45 50 
[1] "MIRSEQ_MATURE_CHIERARCHICAL"
[1] 3
 1  2  3 
60 57 41 
 1  2  3 
60 57 41 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "HISTOLOGICALTYPE"                      
[14] "RADIATIONS.RADIATION.REGIMENINDICATION"
[15] "NUMBERPACKYEARSSMOKED"                 
[16] "NUMBER.OF.LYMPH.NODES"                 
[17] "GLEASON_SCORE"                         
[18] "PSA_VALUE"                             
[19] "DAYS_TO_PSA"                           
[20] "BATCHNUMBER"                           

Input Data has 20 rows and 160 columns.

[1] "Batch" "20"   
[1] "Last Follow UP"
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
        1505         1735           NA           NA           NA         1112 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ 
        4385         5385         5271           NA           NA           NA 
TCGA-C5-A1M5 TCGA-C5-A1M6 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF 
          NA           NA         1409          919           NA         1617 
TCGA-C5-A1MH TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP 
          NA           NA           NA           NA           NA          109 
TCGA-C5-A1MQ TCGA-C5-A2LS TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A2M1 
        1031         1345         2234          491         2383         1169 
TCGA-C5-A2M2 TCGA-C5-A3HD TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CH TCGA-C5-A7CJ 
          25         1582          548           NA          771           NA 
TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UC TCGA-C5-A7UE TCGA-C5-A7UH 
          NA           NA          294           NA         2602         1846 
TCGA-C5-A7X3 TCGA-C5-A7X5 TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL 
          NA           NA         2669         1791           NA           81 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A1O9 TCGA-DS-A1OA TCGA-DS-A1OB TCGA-DS-A1OC 
        3589         3609          266          879           NA          376 
TCGA-DS-A1OD TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-DS-A7WI 
        3874          699          512           NA          223           NA 
TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
          23            8           53           40           25           19 
TCGA-EA-A3HU TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A44S 
          81           36          441          441           55          385 
TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE 
         390            8           45          423           21          456 
TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP 
         455           19           12          383         1398          202 
TCGA-EK-A2IR TCGA-EK-A2PG TCGA-EK-A2PI TCGA-EK-A2PK TCGA-EK-A2PL TCGA-EK-A2PM 
        2679           16           NA           NA           NA           NA 
TCGA-EK-A2R7 TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RJ 
          18            2          123            1           11           36 
TCGA-EK-A2RK TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A2RN TCGA-EK-A2RO TCGA-EK-A3GJ 
          NA          721           68            3            2            3 
TCGA-EK-A3GK TCGA-EK-A3GM TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A1H6 TCGA-EX-A3L1 
           3           NA            1          619          241          211 
TCGA-EX-A449 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A2QG 
         447          136          186           37          725           28 
TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX 
          66           20           31           44           48           45 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A40J TCGA-FU-A57G TCGA-FU-A5XV TCGA-HG-A2PA 
          25          107           41           40           60          773 
TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-HM-A6W2 TCGA-IR-A3L7 TCGA-IR-A3LA 
          NA          632          454          125         4483         4172 
TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LH TCGA-IR-A3LI TCGA-IR-A3LK 
          NA         3571         2949         2394         2493          808 
TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU TCGA-LP-A4AV TCGA-LP-A4AW TCGA-LP-A4AX 
        1106          506            3           NA           27            2 
TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MU-A8JM TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF 
         422            1          165          904            2          132 
TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DV TCGA-Q1-A6DW 
         113          105          178          103          113          175 
TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD TCGA-UC-A7PF 
         190          118           NA           NA 
Variable 1:'AGE':	nDistinctValues=55,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=33,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=107,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=13,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=19,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'HISTOLOGICAL.TYPE':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 14:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 15:'NUMBERPACKYEARSSMOKED':	nDistinctValues=20,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 16:'NUMBER.OF.LYMPH.NODES':	nDistinctValues=11,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 17:'GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 18:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 19:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 20:'BATCH.NUMBER':	nDistinctValues=21,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "PATHOLOGY.T.STAGE"                     
[3] "PATHOLOGY.N.STAGE"                     
[4] "PATHOLOGY.M.STAGE"                     
[5] "HISTOLOGICAL.TYPE"                     
[6] "RADIATIONS.RADIATION.REGIMENINDICATION"
[7] "NUMBERPACKYEARSSMOKED"                 
[8] "NUMBER.OF.LYMPH.NODES"                 
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "2"          
[1] "PATHOLOGY.N" "3"          
Output Data has 160 columns, 1 survival variables, and 8 non-survival variables.
AGE, nv=55, binary=FALSE, numeric=TRUE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
T1 T2 T3 T4 
87 31  2  2 
[1] "table(vv)"
vv
   T1    T2 T3+T4 
   87    31     4 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
T1 T2 T3 T4 
87 31  2  2 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


   T1    T2 T3+T4 
   87    31     4 
PATHOLOGY.N.STAGE, nv=2, binary=FALSE, numeric=TRUE
PATHOLOGY.M.STAGE, nv=3, binary=FALSE, numeric=FALSE
HISTOLOGICAL.TYPE, nv=6, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=20, binary=FALSE, numeric=TRUE
NUMBER.OF.LYMPH.NODES, nv=11, binary=FALSE, numeric=TRUE

Clustering(1) Variable = CN_CNMF
D1V1, survival
          sevent
clus2       0  1
  subtype1 39  5
  subtype2 21  8
  subtype3 55 15
subtype1 subtype2 subtype3 
      44       29       70 
subtype1 subtype2 subtype3 
       5        8       15 
$subtype1
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BE TCGA-C5-A1BL TCGA-C5-A1M5 TCGA-C5-A1M6 
       49.48        57.04        68.84       173.29        67.46        31.40 
TCGA-C5-A1M8 TCGA-C5-A1MF TCGA-C5-A1MP TCGA-C5-A2LS TCGA-C5-A2LX TCGA-C5-A2LY 
       30.21        53.16         3.58        44.22        16.14        78.35 
TCGA-C5-A2M2 TCGA-C5-A7CK TCGA-C5-A7UE TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A3LQ 
        0.82       134.33        85.55        36.76         2.66        22.98 
TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A439 TCGA-EA-A44S 
        0.26         1.74         1.32         0.82        14.50        12.66 
TCGA-EA-A5O9 TCGA-EA-A5ZE TCGA-EA-A5ZF TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2RD 
       13.91        14.99        14.96         0.39        12.59         0.03 
TCGA-EK-A2RL TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A69M TCGA-FU-A3NI TCGA-HM-A4S6 
       23.70         0.03        20.35         6.12         1.45        14.93 
TCGA-IR-A3LC TCGA-IR-A3LI TCGA-MY-A5BD TCGA-Q1-A5R1 TCGA-Q1-A5R2 TCGA-Q1-A5R3 
      117.40        81.96        29.72         3.72         3.45         5.85 
TCGA-Q1-A6DW TCGA-UC-A7PF 
        5.75        93.99 

$subtype2
TCGA-C5-A0TN TCGA-C5-A1BJ TCGA-C5-A1BN TCGA-C5-A1MI TCGA-C5-A1MN TCGA-C5-A2LV 
       11.44       144.16         5.46        35.61        40.93        73.45 
TCGA-C5-A3HD TCGA-C5-A7CH TCGA-C5-A7CL TCGA-C5-A7CM TCGA-C5-A7UH TCGA-DR-A0ZL 
       52.01        25.35        15.48         9.67        60.69        87.75 
TCGA-DS-A0VM TCGA-DS-A7WI TCGA-EA-A43B TCGA-EK-A2H0 TCGA-EK-A2PG TCGA-EK-A2R7 
      117.99         8.28         1.81        45.96         0.53         0.59 
TCGA-EK-A2RJ TCGA-EK-A2RM TCGA-EK-A3GK TCGA-FU-A23L TCGA-FU-A40J TCGA-FU-A5XV 
        1.18         2.24         0.10        23.84         1.35         1.97 
TCGA-HM-A3JJ TCGA-IR-A3LH TCGA-IR-A3LK TCGA-LP-A4AW TCGA-Q1-A6DT 
       21.67        78.71        26.56         0.89         3.39 

$subtype3
TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BK TCGA-C5-A1BM TCGA-C5-A1BQ TCGA-C5-A1M7 
       18.74        36.56       177.04        82.85        19.86        46.32 
TCGA-C5-A1M9 TCGA-C5-A1MH TCGA-C5-A1MJ TCGA-C5-A1MK TCGA-C5-A2M1 TCGA-C5-A3HE 
       35.01        38.99         2.73         2.43        38.43        18.02 
TCGA-C5-A3HF TCGA-C5-A7CJ TCGA-C5-A7UC TCGA-C5-A7X3 TCGA-DR-A0ZM TCGA-DS-A0VN 
       17.85       101.82        17.19         9.34        58.88       118.65 
TCGA-DS-A5RQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-EA-A1QS TCGA-EA-A3HT TCGA-EA-A3QE 
       16.83        16.18         7.33         0.76         0.62         1.18 
TCGA-EA-A3Y4 TCGA-EA-A4BA TCGA-EA-A50E TCGA-EA-A5FO TCGA-EA-A5ZD TCGA-EA-A6QX 
       14.50        12.82         0.26         1.48         0.69         0.62 
TCGA-EK-A2IP TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RE TCGA-EK-A2RN TCGA-EK-A2RO 
        6.64         0.07         4.04         0.36         0.10         0.07 
TCGA-EK-A3GJ TCGA-EX-A1H6 TCGA-EX-A3L1 TCGA-EX-A449 TCGA-EX-A69L TCGA-FU-A23K 
        0.10         7.92         6.94        14.70         4.47         1.22 
TCGA-FU-A2QG TCGA-FU-A3EO TCGA-FU-A3HY TCGA-FU-A3HZ TCGA-FU-A3TQ TCGA-FU-A3TX 
        0.92         2.17         0.66         1.02         1.58         1.48 
TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JK TCGA-HM-A6W2 
        0.82         3.52         1.32        25.41        20.78         4.11 
TCGA-IR-A3L7 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LF TCGA-IR-A3LL TCGA-JW-A5VI 
      147.39       137.16        66.81        96.95        36.36        16.64 
TCGA-LP-A4AU TCGA-LP-A4AX TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BE TCGA-MY-A5BF 
        0.10         0.07        13.87         0.03         0.07         4.34 
TCGA-Q1-A6DV TCGA-Q1-A73R TCGA-RA-A741 TCGA-UC-A7PD 
        3.72         6.25         3.88        11.67 

subtype1 subtype2 subtype3 
    0.03     0.10     0.03 
subtype1 subtype2 subtype3 
  173.29   144.16   177.04 
subtype1 subtype2 subtype3 
  14.975   15.480    6.445 
[1] "0.0 - 173.3 (15.0)" "0.1 - 144.2 (15.5)" "0.0 - 177.0 (6.4)" 
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
  [7] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
 [19] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [25] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [31] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [37] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [43] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [61] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [67] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [73] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [79] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [85] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [91] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [97] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[109] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[121] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[133] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[139] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
  [7] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
 [19] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [25] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [31] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [37] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [43] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [61] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [67] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [73] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [79] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [85] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [91] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [97] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[109] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[121] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[133] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[139] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
  [1] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
  [7] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype3"
 [13] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
 [19] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [25] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
 [31] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [37] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [43] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [49] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype3"
 [61] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype3"
 [67] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
 [73] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
 [79] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [85] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [91] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [97] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[109] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[121] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[127] "subtype2" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[133] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype3"
[139] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
D1V2, continuous
          vv
clus       T1 T2 T3+T4
  subtype1 26  9     1
  subtype2 14  4     0
  subtype3 41 16     2
D1V3, multiclass
D1V4, binary
          cls
clus        0  1
  subtype1 20 14
  subtype2  9  9
  subtype3 44 13
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   20   14
  subtype2    9    9
  subtype3   44   13
   clus
vv  subtype1 subtype2 subtype3
  0       20        9       44
  1       14        9       13
          vv
clus       M0 M1 MX
  subtype1 24  1 14
  subtype2  8  0 11
  subtype3 29  2 28
D1V5, multiclass
          vv
clus       ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  subtype1             0                               41
  subtype2             0                               30
  subtype3             2                               53
          vv
clus       ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  subtype1                                             1
  subtype2                                             1
  subtype3                                             2
          vv
clus       ENDOCERVICAL TYPE OF ADENOCARCINOMA
  subtype1                                   3
  subtype2                                   3
  subtype3                                  10
          vv
clus       ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  subtype1                                         0
  subtype2                                         0
  subtype3                                         1
          vv
clus       MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  subtype1                                            1
  subtype2                                            0
  subtype3                                            2
D1V6, multiclass
D1V7, binary
          cls
clus        0  1
  subtype1  9 37
  subtype2  6 28
  subtype3 10 60
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    9   37
  subtype2    6   28
  subtype3   10   60
     clus
vv    subtype1 subtype2 subtype3
  NO         9        6       10
  YES       37       28       60
D1V8, continuous
D1V9, continuous

Clustering(2) Variable = METHLYATION_CNMF
D2V1, survival
          sevent
clus2       0  1
  subtype1 22  7
  subtype2 14  4
  subtype3 14  2
  subtype4 18  9
  subtype5 20  5
  subtype6 19  5
  subtype7 14  0
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
      29       18       16       27       25       24       14 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
       7        4        2        9        5        5        0 
$subtype1
TCGA-BI-A0VR TCGA-C5-A1BI TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BM TCGA-C5-A1BQ 
       49.48        36.56       144.16       177.04        82.85        19.86 
TCGA-C5-A1M7 TCGA-C5-A1MH TCGA-C5-A1MK TCGA-C5-A1MP TCGA-C5-A7CJ TCGA-DR-A0ZL 
       46.32        38.99         2.43         3.58       101.82        87.75 
TCGA-DR-A0ZM TCGA-DS-A1O9 TCGA-DS-A1OD TCGA-EA-A3HU TCGA-EA-A3QE TCGA-EA-A5ZD 
       58.88         8.75       127.36         2.66         1.18         0.69 
TCGA-EA-A78R TCGA-EK-A2RD TCGA-EX-A3L1 TCGA-EX-A69L TCGA-FU-A3YQ TCGA-HM-A3JJ 
        0.39         0.03         6.94         4.47         3.52        21.67 
TCGA-HM-A4S6 TCGA-LP-A4AU TCGA-LP-A4AW TCGA-MU-A51Y TCGA-MY-A5BE 
       14.93         0.10         0.89        13.87         0.07 

$subtype2
TCGA-BI-A0VS TCGA-C5-A1BE TCGA-C5-A1M6 TCGA-C5-A1MI TCGA-DS-A1OB TCGA-DS-A3LQ 
       57.04        68.84        31.40        35.61        28.31        22.98 
TCGA-EA-A439 TCGA-EA-A4BA TCGA-EA-A5ZF TCGA-EK-A2IR TCGA-EK-A2R7 TCGA-EK-A2RM 
       14.50        12.82        14.96        88.08         0.59         2.24 
TCGA-EX-A1H5 TCGA-FU-A23L TCGA-FU-A3HZ TCGA-FU-A57G TCGA-HM-A6W2 TCGA-IR-A3LA 
       20.35        23.84         1.02         1.32         4.11       137.16 

$subtype3
TCGA-C5-A1M8 TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7UE TCGA-EA-A44S TCGA-EA-A5O9 
       30.21       134.33        15.48        85.55        12.66        13.91 
TCGA-EX-A69M TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3WB TCGA-HG-A2PA TCGA-IR-A3LL 
        6.12         1.45         1.58         0.82        25.41        36.36 
TCGA-MY-A5BF TCGA-Q1-A5R2 TCGA-Q1-A6DW TCGA-UC-A7PF 
        4.34         3.45         5.75        93.99 

$subtype4
TCGA-C5-A0TN TCGA-C5-A1BF TCGA-C5-A1BN TCGA-C5-A1MQ TCGA-C5-A2LV TCGA-C5-A2LY 
       11.44        18.74         5.46        33.90        73.45        78.35 
TCGA-C5-A3HD TCGA-C5-A7CH TCGA-C5-A7UC TCGA-C5-A7X3 TCGA-C5-A7X5 TCGA-DS-A0VN 
       52.01        25.35        17.19         9.34        13.61       118.65 
TCGA-DS-A1OC TCGA-DS-A7WI TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-EA-A50E TCGA-EK-A2H0 
       12.36         8.28        14.50         1.81         0.26        45.96 
TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A3GJ TCGA-EK-A3GN TCGA-IR-A3LH TCGA-JW-A5VI 
        0.36         1.18         0.10         0.03        78.71        16.64 
TCGA-LP-A4AX TCGA-Q1-A6DT TCGA-UC-A7PD 
        0.07         3.39        11.67 

$subtype5
TCGA-C5-A1BL TCGA-C5-A1M5 TCGA-C5-A1MN TCGA-C5-A2LX TCGA-C5-A7UH TCGA-DS-A0VK 
      173.29        67.46        40.93        16.14        60.69        36.76 
TCGA-DS-A0VM TCGA-DS-A1OA TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A5FO 
      117.99        28.90         0.26         1.74         0.82         1.48 
TCGA-EA-A6QX TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RN 
        0.62         6.64         0.53         0.07         4.04         0.10 
TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A5XV TCGA-IR-A3L7 TCGA-IR-A3LC TCGA-IR-A3LK 
        0.92         0.66         1.97       147.39       117.40        26.56 
TCGA-Q1-A5R3 
        5.85 

$subtype6
TCGA-C5-A1M9 TCGA-C5-A1MJ TCGA-C5-A2LS TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HE 
       35.01         2.73        44.22        38.43         0.82        18.02 
TCGA-C5-A3HF TCGA-C5-A7CM TCGA-DS-A7WF TCGA-DS-A7WH TCGA-EK-A2RL TCGA-EK-A3GK 
       17.85         9.67        16.18         7.33        23.70         0.10 
TCGA-EX-A1H6 TCGA-EX-A449 TCGA-FU-A23K TCGA-FU-A3EO TCGA-FU-A40J TCGA-IR-A3LB 
        7.92        14.70         1.22         2.17         1.35        66.81 
TCGA-IR-A3LF TCGA-IR-A3LI TCGA-MY-A5BD TCGA-Q1-A5R1 TCGA-Q1-A6DV TCGA-Q1-A73R 
       96.95        81.96        29.72         3.72         3.72         6.25 

$subtype7
TCGA-C5-A1MF TCGA-DS-A0VL TCGA-DS-A5RQ TCGA-EA-A1QS TCGA-EA-A3HR TCGA-EA-A3HT 
       53.16         2.66        16.83         0.76         1.32         0.62 
TCGA-EA-A5ZE TCGA-EK-A2GZ TCGA-EK-A2RO TCGA-FU-A3TX TCGA-HM-A3JK TCGA-MU-A5YI 
       14.99        12.59         0.07         1.48        20.78         0.03 
TCGA-MU-A8JM TCGA-RA-A741 
        5.42         3.88 

subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
    0.03     0.59     0.82     0.03     0.07     0.10     0.03 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
  177.04   137.16   134.33   118.65   173.29    96.95    53.16 
subtype1 subtype2 subtype3 subtype4 subtype5 subtype6 subtype7 
  13.870   21.665   13.285   12.360    5.850   12.185    3.270 
[1] "0.0 - 177.0 (13.9)" "0.6 - 137.2 (21.7)" "0.8 - 134.3 (13.3)"
[4] "0.0 - 118.7 (12.4)" "0.1 - 173.3 (5.8)"  "0.1 - 97.0 (12.2)" 
[7] "0.0 - 53.2 (3.3)"  
  [1] "subtype1" "subtype2" "subtype4" "subtype2" "subtype4" "subtype1"
  [7] "subtype1" "subtype1" "subtype5" "subtype1" "subtype4" "subtype1"
 [13] "subtype5" "subtype2" "subtype1" "subtype3" "subtype6" "subtype7"
 [19] "subtype1" "subtype2" "subtype6" "subtype1" "subtype5" "subtype1"
 [25] "subtype4" "subtype6" "subtype4" "subtype5" "subtype4" "subtype6"
 [31] "subtype6" "subtype4" "subtype6" "subtype6" "subtype4" "subtype1"
 [37] "subtype3" "subtype3" "subtype6" "subtype4" "subtype3" "subtype5"
 [43] "subtype4" "subtype4" "subtype1" "subtype1" "subtype5" "subtype7"
 [49] "subtype5" "subtype4" "subtype1" "subtype5" "subtype2" "subtype4"
 [55] "subtype1" "subtype2" "subtype7" "subtype6" "subtype6" "subtype4"
 [61] "subtype7" "subtype5" "subtype5" "subtype7" "subtype5" "subtype7"
 [67] "subtype1" "subtype1" "subtype4" "subtype2" "subtype4" "subtype3"
 [73] "subtype2" "subtype4" "subtype5" "subtype3" "subtype1" "subtype7"
 [79] "subtype2" "subtype5" "subtype1" "subtype7" "subtype4" "subtype5"
 [85] "subtype2" "subtype5" "subtype2" "subtype5" "subtype5" "subtype1"
 [91] "subtype4" "subtype4" "subtype6" "subtype2" "subtype5" "subtype7"
 [97] "subtype4" "subtype6" "subtype4" "subtype2" "subtype6" "subtype1"
[103] "subtype6" "subtype1" "subtype3" "subtype6" "subtype2" "subtype5"
[109] "subtype6" "subtype5" "subtype2" "subtype3" "subtype3" "subtype7"
[115] "subtype3" "subtype1" "subtype6" "subtype2" "subtype5" "subtype3"
[121] "subtype1" "subtype7" "subtype1" "subtype2" "subtype5" "subtype2"
[127] "subtype6" "subtype5" "subtype6" "subtype4" "subtype6" "subtype5"
[133] "subtype3" "subtype4" "subtype1" "subtype1" "subtype4" "subtype1"
[139] "subtype7" "subtype7" "subtype6" "subtype1" "subtype3" "subtype6"
[145] "subtype3" "subtype5" "subtype4" "subtype6" "subtype3" "subtype6"
[151] "subtype7" "subtype4" "subtype3"
  [1] "subtype1" "subtype2" "subtype4" "subtype2" "subtype4" "subtype1"
  [7] "subtype1" "subtype1" "subtype5" "subtype1" "subtype4" "subtype1"
 [13] "subtype5" "subtype2" "subtype1" "subtype3" "subtype6" "subtype7"
 [19] "subtype1" "subtype2" "subtype6" "subtype1" "subtype5" "subtype1"
 [25] "subtype4" "subtype6" "subtype4" "subtype5" "subtype4" "subtype6"
 [31] "subtype6" "subtype4" "subtype6" "subtype6" "subtype4" "subtype1"
 [37] "subtype3" "subtype3" "subtype6" "subtype4" "subtype3" "subtype5"
 [43] "subtype4" "subtype4" "subtype1" "subtype1" "subtype5" "subtype7"
 [49] "subtype5" "subtype4" "subtype1" "subtype5" "subtype2" "subtype4"
 [55] "subtype1" "subtype2" "subtype7" "subtype6" "subtype6" "subtype4"
 [61] "subtype7" "subtype5" "subtype5" "subtype7" "subtype5" "subtype7"
 [67] "subtype1" "subtype1" "subtype4" "subtype2" "subtype4" "subtype3"
 [73] "subtype2" "subtype4" "subtype5" "subtype3" "subtype1" "subtype7"
 [79] "subtype2" "subtype5" "subtype1" "subtype7" "subtype4" "subtype5"
 [85] "subtype2" "subtype5" "subtype2" "subtype5" "subtype5" "subtype1"
 [91] "subtype4" "subtype4" "subtype6" "subtype2" "subtype5" "subtype7"
 [97] "subtype4" "subtype6" "subtype4" "subtype2" "subtype6" "subtype1"
[103] "subtype6" "subtype1" "subtype3" "subtype6" "subtype2" "subtype5"
[109] "subtype6" "subtype5" "subtype2" "subtype3" "subtype3" "subtype7"
[115] "subtype3" "subtype1" "subtype6" "subtype2" "subtype5" "subtype3"
[121] "subtype1" "subtype7" "subtype1" "subtype2" "subtype5" "subtype2"
[127] "subtype6" "subtype5" "subtype6" "subtype4" "subtype6" "subtype5"
[133] "subtype3" "subtype4" "subtype1" "subtype1" "subtype4" "subtype1"
[139] "subtype7" "subtype7" "subtype6" "subtype1" "subtype3" "subtype6"
[145] "subtype3" "subtype5" "subtype4" "subtype6" "subtype3" "subtype6"
[151] "subtype7" "subtype4" "subtype3"
  [1] "subtype1" "subtype2" "subtype4" "subtype2" "subtype4" "subtype1"
  [7] "subtype1" "subtype1" "subtype5" "subtype1" "subtype4" "subtype1"
 [13] "subtype5" "subtype2" "subtype1" "subtype3" "subtype6" "subtype7"
 [19] "subtype1" "subtype2" "subtype6" "subtype1" "subtype5" "subtype1"
 [25] "subtype4" "subtype6" "subtype4" "subtype5" "subtype4" "subtype6"
 [31] "subtype6" "subtype4" "subtype6" "subtype6" "subtype4" "subtype1"
 [37] "subtype3" "subtype3" "subtype6" "subtype4" "subtype3" "subtype5"
 [43] "subtype4" "subtype4" "subtype1" "subtype1" "subtype5" "subtype7"
 [49] "subtype5" "subtype4" "subtype1" "subtype5" "subtype2" "subtype4"
 [55] "subtype1" "subtype2" "subtype7" "subtype6" "subtype6" "subtype4"
 [61] "subtype7" "subtype5" "subtype5" "subtype7" "subtype5" "subtype7"
 [67] "subtype1" "subtype1" "subtype4" "subtype2" "subtype4" "subtype3"
 [73] "subtype2" "subtype4" "subtype5" "subtype3" "subtype1" "subtype7"
 [79] "subtype2" "subtype5" "subtype1" "subtype7" "subtype4" "subtype5"
 [85] "subtype2" "subtype5" "subtype2" "subtype5" "subtype5" "subtype1"
 [91] "subtype4" "subtype4" "subtype6" "subtype2" "subtype5" "subtype7"
 [97] "subtype4" "subtype6" "subtype4" "subtype2" "subtype6" "subtype1"
[103] "subtype6" "subtype1" "subtype3" "subtype6" "subtype2" "subtype5"
[109] "subtype6" "subtype5" "subtype2" "subtype3" "subtype3" "subtype7"
[115] "subtype3" "subtype1" "subtype6" "subtype2" "subtype5" "subtype3"
[121] "subtype1" "subtype7" "subtype1" "subtype2" "subtype5" "subtype2"
[127] "subtype6" "subtype5" "subtype6" "subtype4" "subtype6" "subtype5"
[133] "subtype3" "subtype4" "subtype1" "subtype1" "subtype4" "subtype1"
[139] "subtype7" "subtype7" "subtype6" "subtype1" "subtype3" "subtype6"
[145] "subtype3" "subtype5" "subtype4" "subtype6" "subtype3" "subtype6"
[151] "subtype7" "subtype4" "subtype3"
D2V2, continuous
          vv
clus       T1 T2 T3+T4
  subtype1 16  8     1
  subtype2 11  5     1
  subtype3  7  4     0
  subtype4 13  5     1
  subtype5 16  3     0
  subtype6 15  4     1
  subtype7  9  2     0
D2V3, multiclass
D2V4, binary
          cls
clus        0  1
  subtype1 15  9
  subtype2 10  6
  subtype3  7  4
  subtype4 14  5
  subtype5 10  9
  subtype6 14  5
  subtype7  9  1
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   15    9
  subtype2   10    6
  subtype3    7    4
  subtype4   14    5
  subtype5   10    9
  subtype6   14    5
  subtype7    9    1
          vv
clus       M0 M1 MX
  subtype1 14  0 11
  subtype2 10  1  6
  subtype3  6  0  7
  subtype4 12  0  8
  subtype5 13  0  6
  subtype6  7  2 12
  subtype7  6  0  5
D2V5, multiclass
          vv
clus       ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  subtype1             0                               29
  subtype2             1                               17
  subtype3             0                               16
  subtype4             0                               30
  subtype5             0                               25
  subtype6             1                                3
  subtype7             0                               14
          vv
clus       ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  subtype1                                             0
  subtype2                                             0
  subtype3                                             0
  subtype4                                             0
  subtype5                                             0
  subtype6                                             4
  subtype7                                             0
          vv
clus       ENDOCERVICAL TYPE OF ADENOCARCINOMA
  subtype1                                   0
  subtype2                                   2
  subtype3                                   0
  subtype4                                   0
  subtype5                                   0
  subtype6                                  14
  subtype7                                   0
          vv
clus       ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  subtype1                                         0
  subtype2                                         1
  subtype3                                         0
  subtype4                                         0
  subtype5                                         0
  subtype6                                         0
  subtype7                                         0
          vv
clus       MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  subtype1                                            0
  subtype2                                            0
  subtype3                                            0
  subtype4                                            0
  subtype5                                            0
  subtype6                                            3
  subtype7                                            0
D2V6, multiclass
D2V7, binary
          cls
clus        0  1
  subtype1  8 21
  subtype2  6 15
  subtype3  1 15
  subtype4  7 23
  subtype5  4 21
  subtype6  2 23
  subtype7  2 12
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    8   21
  subtype2    6   15
  subtype3    1   15
  subtype4    7   23
  subtype5    4   21
  subtype6    2   23
  subtype7    2   12
D2V8, continuous
D2V9, continuous

Clustering(3) Variable = MRNASEQ_CNMF
D3V1, survival
          sevent
clus2       0  1
  subtype1 43 11
  subtype2 21  3
  subtype3 28  5
  subtype4 23  5
subtype1 subtype2 subtype3 subtype4 
      54       24       33       28 
subtype1 subtype2 subtype3 subtype4 
      11        3        5        5 
$subtype1
TCGA-BI-A0VR TCGA-C5-A1BE TCGA-C5-A1BI TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL 
       49.48        68.84        36.56       144.16       177.04       173.29 
TCGA-C5-A1BM TCGA-C5-A1BQ TCGA-C5-A1M5 TCGA-C5-A1M7 TCGA-C5-A1M8 TCGA-C5-A1MH 
       82.85        19.86        67.46        46.32        30.21        38.99 
TCGA-C5-A1MK TCGA-C5-A1MP TCGA-C5-A7CJ TCGA-C5-A7CL TCGA-C5-A7UE TCGA-DR-A0ZL 
        2.43         3.58       101.82        15.48        85.55        87.75 
TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A5RQ TCGA-EA-A1QT TCGA-EA-A3HQ 
       58.88        36.76         2.66        16.83         0.26         1.74 
TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3HU TCGA-EA-A3QE TCGA-EA-A44S 
        1.32         0.82         0.62         2.66         1.18        12.66 
TCGA-EA-A50E TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2PG 
        0.26        13.91         0.69         0.62         0.39         0.53 
TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RN TCGA-EK-A2RO TCGA-FU-A23L TCGA-FU-A2QG 
        0.07         4.04         0.10         0.07        23.84         0.92 
TCGA-FU-A3HY TCGA-FU-A3TQ TCGA-FU-A3YQ TCGA-FU-A5XV TCGA-HM-A3JJ TCGA-HM-A4S6 
        0.66         1.58         3.52         1.97        21.67        14.93 
TCGA-IR-A3LL TCGA-LP-A4AW TCGA-MU-A51Y TCGA-MY-A5BF TCGA-Q1-A5R2 TCGA-Q1-A6DW 
       36.36         0.89        13.87         4.34         3.45         5.75 

$subtype2
TCGA-BI-A0VS TCGA-C5-A1MI TCGA-C5-A2LX TCGA-C5-A7CK TCGA-DS-A1OB TCGA-DS-A1OD 
       57.04        35.61        16.14       134.33        28.31       127.36 
TCGA-DS-A3LQ TCGA-EA-A1QS TCGA-EA-A439 TCGA-EA-A4BA TCGA-EA-A5ZE TCGA-EA-A5ZF 
       22.98         0.76        14.50        12.82        14.99        14.96 
TCGA-EK-A2GZ TCGA-EK-A2IR TCGA-EX-A1H5 TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TX 
       12.59        88.08        20.35         1.02         1.45         1.48 
TCGA-FU-A3WB TCGA-FU-A57G TCGA-HM-A3JK TCGA-HM-A6W2 TCGA-MU-A5YI TCGA-MY-A5BE 
        0.82         1.32        20.78         4.11         0.03         0.07 

$subtype3
TCGA-C5-A1M6 TCGA-C5-A1M9 TCGA-C5-A1MF TCGA-C5-A1MJ TCGA-C5-A2LS TCGA-C5-A2M1 
       31.40        35.01        53.16         2.73        44.22        38.43 
TCGA-C5-A2M2 TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CM TCGA-EA-A5FO TCGA-EK-A2R7 
        0.82        18.02        17.85         9.67         1.48         0.59 
TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A3GK TCGA-EX-A1H6 TCGA-EX-A449 TCGA-EX-A69M 
       23.70         2.24         0.10         7.92        14.70         6.12 
TCGA-FU-A23K TCGA-FU-A3EO TCGA-FU-A40J TCGA-HG-A2PA TCGA-IR-A3L7 TCGA-IR-A3LA 
        1.22         2.17         1.35        25.41       147.39       137.16 
TCGA-IR-A3LB TCGA-IR-A3LC TCGA-IR-A3LF TCGA-IR-A3LI TCGA-MY-A5BD TCGA-Q1-A5R1 
       66.81       117.40        96.95        81.96        29.72         3.72 
TCGA-Q1-A6DV TCGA-Q1-A73R TCGA-RA-A741 
        3.72         6.25         3.88 

$subtype4
TCGA-C5-A0TN TCGA-C5-A1BF TCGA-C5-A1BN TCGA-C5-A1MN TCGA-C5-A2LV TCGA-C5-A2LY 
       11.44        18.74         5.46        40.93        73.45        78.35 
TCGA-C5-A3HD TCGA-C5-A7CH TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A1OC TCGA-EA-A3Y4 
       52.01        25.35       117.99       118.65        12.36        14.50 
TCGA-EA-A43B TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2RE TCGA-EK-A2RJ TCGA-EK-A3GJ 
        1.81        45.96         6.64         0.36         1.18         0.10 
TCGA-EK-A3GN TCGA-EX-A3L1 TCGA-EX-A69L TCGA-IR-A3LH TCGA-IR-A3LK TCGA-JW-A5VI 
        0.03         6.94         4.47        78.71        26.56        16.64 
TCGA-LP-A4AU TCGA-LP-A4AX TCGA-Q1-A5R3 TCGA-Q1-A6DT 
        0.10         0.07         5.85         3.39 

subtype1 subtype2 subtype3 subtype4 
    0.07     0.03     0.10     0.03 
subtype1 subtype2 subtype3 subtype4 
  177.04   134.33   147.39   118.65 
subtype1 subtype2 subtype3 subtype4 
   5.045   14.730   14.700   11.900 
[1] "0.1 - 177.0 (5.0)"  "0.0 - 134.3 (14.7)" "0.1 - 147.4 (14.7)"
[4] "0.0 - 118.7 (11.9)"
  [1] "subtype1" "subtype2" "subtype4" "subtype1" "subtype4" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
 [13] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [19] "subtype1" "subtype2" "subtype3" "subtype1" "subtype4" "subtype1"
 [25] "subtype3" "subtype4" "subtype2" "subtype4" "subtype3" "subtype3"
 [31] "subtype4" "subtype3" "subtype3" "subtype4" "subtype1" "subtype2"
 [37] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype1" "subtype4" "subtype4" "subtype2" "subtype4" "subtype2"
 [49] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype2"
 [61] "subtype4" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [67] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [73] "subtype4" "subtype4" "subtype2" "subtype1" "subtype3" "subtype1"
 [79] "subtype1" "subtype4" "subtype4" "subtype3" "subtype3" "subtype1"
 [85] "subtype1" "subtype4" "subtype3" "subtype4" "subtype2" "subtype3"
 [91] "subtype4" "subtype3" "subtype4" "subtype3" "subtype3" "subtype1"
 [97] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[103] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[109] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
[121] "subtype4" "subtype1" "subtype4" "subtype4" "subtype1" "subtype4"
[127] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[133] "subtype1" "subtype4" "subtype4" "subtype3" "subtype1" "subtype3"
[139] "subtype3"
  [1] "subtype1" "subtype2" "subtype4" "subtype1" "subtype4" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
 [13] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [19] "subtype1" "subtype2" "subtype3" "subtype1" "subtype4" "subtype1"
 [25] "subtype3" "subtype4" "subtype2" "subtype4" "subtype3" "subtype3"
 [31] "subtype4" "subtype3" "subtype3" "subtype4" "subtype1" "subtype2"
 [37] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype1" "subtype4" "subtype4" "subtype2" "subtype4" "subtype2"
 [49] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype2"
 [61] "subtype4" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [67] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [73] "subtype4" "subtype4" "subtype2" "subtype1" "subtype3" "subtype1"
 [79] "subtype1" "subtype4" "subtype4" "subtype3" "subtype3" "subtype1"
 [85] "subtype1" "subtype4" "subtype3" "subtype4" "subtype2" "subtype3"
 [91] "subtype4" "subtype3" "subtype4" "subtype3" "subtype3" "subtype1"
 [97] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[103] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[109] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
[121] "subtype4" "subtype1" "subtype4" "subtype4" "subtype1" "subtype4"
[127] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[133] "subtype1" "subtype4" "subtype4" "subtype3" "subtype1" "subtype3"
[139] "subtype3"
  [1] "subtype1" "subtype2" "subtype4" "subtype1" "subtype4" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
 [13] "subtype1" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [19] "subtype1" "subtype2" "subtype3" "subtype1" "subtype4" "subtype1"
 [25] "subtype3" "subtype4" "subtype2" "subtype4" "subtype3" "subtype3"
 [31] "subtype4" "subtype3" "subtype3" "subtype4" "subtype1" "subtype2"
 [37] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [43] "subtype1" "subtype4" "subtype4" "subtype2" "subtype4" "subtype2"
 [49] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [55] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype2"
 [61] "subtype4" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [67] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
 [73] "subtype4" "subtype4" "subtype2" "subtype1" "subtype3" "subtype1"
 [79] "subtype1" "subtype4" "subtype4" "subtype3" "subtype3" "subtype1"
 [85] "subtype1" "subtype4" "subtype3" "subtype4" "subtype2" "subtype3"
 [91] "subtype4" "subtype3" "subtype4" "subtype3" "subtype3" "subtype1"
 [97] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[103] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype1"
[109] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype4" "subtype3"
[121] "subtype4" "subtype1" "subtype4" "subtype4" "subtype1" "subtype4"
[127] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[133] "subtype1" "subtype4" "subtype4" "subtype3" "subtype1" "subtype3"
[139] "subtype3"
D3V2, continuous
          vv
clus       T1 T2 T3+T4
  subtype1 29 13     1
  subtype2 14  7     1
  subtype3 21  4     1
  subtype4 15  5     0
D3V3, multiclass
D3V4, binary
          cls
clus        0  1
  subtype1 24 18
  subtype2 13  7
  subtype3 19  6
  subtype4 15  5
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   24   18
  subtype2   13    7
  subtype3   19    6
  subtype4   15    5
   clus
vv  subtype1 subtype2 subtype3 subtype4
  0       24       13       19       15
  1       18        7        6        5
          vv
clus       M0 M1 MX
  subtype1 23  0 21
  subtype2 12  1  9
  subtype3 14  2 11
  subtype4 13  0  9
D3V5, multiclass
          vv
clus       ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  subtype1             0                               55
  subtype2             1                               23
  subtype3             0                               14
  subtype4             0                               30
          vv
clus       ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  subtype1                                             0
  subtype2                                             0
  subtype3                                             4
  subtype4                                             0
          vv
clus       ENDOCERVICAL TYPE OF ADENOCARCINOMA
  subtype1                                   0
  subtype2                                   2
  subtype3                                  13
  subtype4                                   0
          vv
clus       ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  subtype1                                         0
  subtype2                                         0
  subtype3                                         1
  subtype4                                         0
          vv
clus       MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  subtype1                                            0
  subtype2                                            0
  subtype3                                            3
  subtype4                                            0
D3V6, multiclass
D3V7, binary
          cls
clus        0  1
  subtype1 10 45
  subtype2  7 19
  subtype3  4 31
  subtype4  7 23
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   10   45
  subtype2    7   19
  subtype3    4   31
  subtype4    7   23
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        10        7        4        7
  YES       45       19       31       23
D3V8, continuous
D3V9, continuous

Clustering(4) Variable = MRNASEQ_CHIERARCHICAL
D4V1, survival
          sevent
clus2       0  1
  subtype1 11  2
  subtype2 76 16
  subtype3 28  6
subtype1 subtype2 subtype3 
      13       92       34 
subtype1 subtype2 subtype3 
       2       16        6 
$subtype1
TCGA-C5-A0TN TCGA-C5-A1BF TCGA-C5-A2LV TCGA-C5-A3HD TCGA-C5-A3HE TCGA-EA-A3Y4 
       11.44        18.74        73.45        52.01        18.02        14.50 
TCGA-EA-A43B TCGA-EK-A2RJ TCGA-EK-A3GN TCGA-EX-A3L1 TCGA-IR-A3LH TCGA-LP-A4AU 
        1.81         1.18         0.03         6.94        78.71         0.10 
TCGA-LP-A4AX 
        0.07 

$subtype2
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A1BE TCGA-C5-A1BI TCGA-C5-A1BJ TCGA-C5-A1BK 
       49.48        57.04        68.84        36.56       144.16       177.04 
TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M5 TCGA-C5-A1M7 
      173.29        82.85         5.46        19.86        67.46        46.32 
TCGA-C5-A1M8 TCGA-C5-A1MH TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MP TCGA-C5-A2LX 
       30.21        38.99         2.43        40.93         3.58        16.14 
TCGA-C5-A2LY TCGA-C5-A7CH TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7UE 
       78.35        25.35       101.82       134.33        15.48        85.55 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN 
       87.75        58.88        36.76         2.66       117.99       118.65 
TCGA-DS-A1OB TCGA-DS-A1OC TCGA-DS-A1OD TCGA-DS-A3LQ TCGA-DS-A5RQ TCGA-EA-A1QS 
       28.31        12.36       127.36        22.98        16.83         0.76 
TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3HU 
        0.26         1.74         1.32         0.82         0.62         2.66 
TCGA-EA-A3QE TCGA-EA-A44S TCGA-EA-A50E TCGA-EA-A5O9 TCGA-EA-A5ZD TCGA-EA-A5ZE 
        1.18        12.66         0.26        13.91         0.69        14.99 
TCGA-EA-A6QX TCGA-EA-A78R TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2IR 
        0.62         0.39        12.59        45.96         6.64        88.08 
TCGA-EK-A2PG TCGA-EK-A2RB TCGA-EK-A2RC TCGA-EK-A2RE TCGA-EK-A2RN TCGA-EK-A2RO 
        0.53         0.07         4.04         0.36         0.10         0.07 
TCGA-EK-A3GJ TCGA-EX-A1H5 TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23L TCGA-FU-A2QG 
        0.10        20.35         4.47         6.12        23.84         0.92 
TCGA-FU-A3HY TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ 
        0.66         1.45         1.58         1.48         0.82         3.52 
TCGA-FU-A5XV TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 
        1.97        25.41        21.67        20.78        14.93       147.39 
TCGA-IR-A3LC TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AW TCGA-MU-A51Y 
      117.40        26.56        36.36        16.64         0.89        13.87 
TCGA-MU-A5YI TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R2 TCGA-Q1-A5R3 TCGA-Q1-A6DT 
        0.03         0.07         4.34         3.45         5.85         3.39 
TCGA-Q1-A6DW TCGA-RA-A741 
        5.75         3.88 

$subtype3
TCGA-C5-A1M6 TCGA-C5-A1M9 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A2LS 
       31.40        35.01        53.16        35.61         2.73        44.22 
TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HF TCGA-C5-A7CM TCGA-EA-A439 TCGA-EA-A4BA 
       38.43         0.82        17.85         9.67        14.50        12.82 
TCGA-EA-A5FO TCGA-EA-A5ZF TCGA-EK-A2R7 TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A3GK 
        1.48        14.96         0.59        23.70         2.24         0.10 
TCGA-EX-A1H6 TCGA-EX-A449 TCGA-FU-A23K TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A40J 
        7.92        14.70         1.22         2.17         1.02         1.35 
TCGA-FU-A57G TCGA-HM-A6W2 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LF TCGA-IR-A3LI 
        1.32         4.11       137.16        66.81        96.95        81.96 
TCGA-MY-A5BD TCGA-Q1-A5R1 TCGA-Q1-A6DV TCGA-Q1-A73R 
       29.72         3.72         3.72         6.25 

subtype1 subtype2 subtype3 
    0.03     0.03     0.10 
subtype1 subtype2 subtype3 
   78.71   177.04   137.16 
subtype1 subtype2 subtype3 
  11.440   13.265   11.245 
[1] "0.0 - 78.7 (11.4)"  "0.0 - 177.0 (13.3)" "0.1 - 137.2 (11.2)"
  [1] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [19] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [25] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
 [31] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [61] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [67] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [79] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
 [85] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [91] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[121] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[127] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[139] "subtype2"
  [1] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [19] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [25] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
 [31] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [61] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [67] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [79] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
 [85] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [91] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[121] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[127] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[139] "subtype2"
  [1] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [13] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
 [19] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [25] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
 [31] "subtype1" "subtype1" "subtype3" "subtype2" "subtype2" "subtype2"
 [37] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [43] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [49] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
 [55] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
 [61] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [67] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
 [79] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype2"
 [85] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
 [91] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
 [97] "subtype2" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[103] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[109] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[115] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[121] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[127] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[139] "subtype2"
D4V2, continuous
          vv
clus       T1 T2 T3+T4
  subtype1  7  3     0
  subtype2 52 19     2
  subtype3 20  7     1
D4V3, multiclass
D4V4, binary
          cls
clus        0  1
  subtype1  8  3
  subtype2 44 26
  subtype3 19  7
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    8    3
  subtype2   44   26
  subtype3   19    7
   clus
vv  subtype1 subtype2 subtype3
  0        8       44       19
  1        3       26        7
          vv
clus       M0 M1 MX
  subtype1  7  0  4
  subtype2 41  0 34
  subtype3 14  3 12
D4V5, multiclass
          vv
clus       ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  subtype1             0                               14
  subtype2             0                               97
  subtype3             1                               11
          vv
clus       ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  subtype1                                             0
  subtype2                                             0
  subtype3                                             4
          vv
clus       ENDOCERVICAL TYPE OF ADENOCARCINOMA
  subtype1                                   0
  subtype2                                   0
  subtype3                                  15
          vv
clus       ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  subtype1                                         0
  subtype2                                         0
  subtype3                                         1
          vv
clus       MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  subtype1                                            0
  subtype2                                            0
  subtype3                                            3
D4V6, multiclass
D4V7, binary
          cls
clus        0  1
  subtype1  2 12
  subtype2 21 76
  subtype3  5 30
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1    2   12
  subtype2   21   76
  subtype3    5   30
     clus
vv    subtype1 subtype2 subtype3
  NO         2       21        5
  YES       12       76       30
D4V8, continuous
D4V9, continuous

Clustering(5) Variable = MIRSEQ_CNMF
D5V1, survival
          sevent
clus2       0  1
  subtype1 48 12
  subtype2 31 11
  subtype3 41  8
subtype1 subtype2 subtype3 
      60       42       49 
subtype1 subtype2 subtype3 
      12       11        8 
$subtype1
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BI TCGA-C5-A1BJ 
       49.48        57.04        11.44        68.84        36.56       144.16 
TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BN TCGA-C5-A1BQ TCGA-C5-A1M7 TCGA-C5-A1MH 
      177.04       173.29         5.46        19.86        46.32        38.99 
TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A2LV TCGA-C5-A2LX TCGA-C5-A2LY TCGA-C5-A3HD 
        2.43        40.93        73.45        16.14        78.35        52.01 
TCGA-C5-A7CH TCGA-C5-A7UC TCGA-C5-A7UH TCGA-C5-A7X3 TCGA-DR-A0ZL TCGA-DS-A0VL 
       25.35        17.19        60.69         9.34        87.75         2.66 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A1OB TCGA-DS-A1OC TCGA-DS-A3LQ TCGA-EA-A1QT 
      117.99       118.65        28.31        12.36        22.98         0.26 
TCGA-EA-A3HQ TCGA-EA-A3HU TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EK-A2GZ TCGA-EK-A2H0 
        1.74         2.66         1.18        14.50        12.59        45.96 
TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2RB TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RN 
        6.64         0.53         0.07         0.03         0.36         0.10 
TCGA-EK-A3GJ TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A2QG TCGA-FU-A3HY 
        0.10         0.03        20.35         6.94         0.92         0.66 
TCGA-FU-A3TQ TCGA-FU-A5XV TCGA-IR-A3LK TCGA-IR-A3LL TCGA-JW-A5VI TCGA-LP-A4AU 
        1.58         1.97        26.56        36.36        16.64         0.10 
TCGA-LP-A4AX TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-Q1-A6DW TCGA-RA-A741 TCGA-UC-A7PD 
        0.07         5.85         3.39         5.75         3.88        11.67 

$subtype2
TCGA-C5-A1BF TCGA-C5-A1M5 TCGA-C5-A1MP TCGA-C5-A3HF TCGA-C5-A7CJ TCGA-C5-A7CK 
       18.74        67.46         3.58        17.85       101.82       134.33 
TCGA-C5-A7CL TCGA-C5-A7UE TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A1O9 TCGA-DS-A1OA 
       15.48        85.55        58.88        36.76         8.75        28.90 
TCGA-DS-A5RQ TCGA-DS-A7WH TCGA-EA-A1QS TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
       16.83         7.33         0.76         1.32         0.82         0.62 
TCGA-EA-A44S TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A78R TCGA-EK-A2RC 
       12.66         0.26         0.69        14.99         0.39         4.04 
TCGA-EK-A2RO TCGA-EX-A1H6 TCGA-FU-A3NI TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ 
        0.07         7.92         1.45         1.48         0.82         3.52 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LC 
       25.41        21.67        20.78        14.93       147.39       117.40 
TCGA-IR-A3LH TCGA-LP-A4AW TCGA-MU-A51Y TCGA-MU-A5YI TCGA-Q1-A5R2 TCGA-UC-A7PF 
       78.71         0.89        13.87         0.03         3.45        93.99 

$subtype3
TCGA-C5-A1BM TCGA-C5-A1M6 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF TCGA-C5-A1MI 
       82.85        31.40        30.21        35.01        53.16        35.61 
TCGA-C5-A1MJ TCGA-C5-A1MQ TCGA-C5-A2LS TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HE 
        2.73        33.90        44.22        38.43         0.82        18.02 
TCGA-C5-A7CM TCGA-DS-A1OD TCGA-DS-A7WF TCGA-DS-A7WI TCGA-EA-A439 TCGA-EA-A43B 
        9.67       127.36        16.18         8.28        14.50         1.81 
TCGA-EA-A4BA TCGA-EA-A5FO TCGA-EA-A5O9 TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EK-A2IR 
       12.82         1.48        13.91        14.96         0.62        88.08 
TCGA-EK-A2R7 TCGA-EK-A2RJ TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A3GK TCGA-EX-A449 
        0.59         1.18        23.70         2.24         0.10        14.70 
TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A3HZ 
        4.47         6.12         1.22        23.84         2.17         1.02 
TCGA-FU-A40J TCGA-FU-A57G TCGA-HM-A6W2 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LF 
        1.35         1.32         4.11       137.16        66.81        96.95 
TCGA-IR-A3LI TCGA-MY-A5BD TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DV 
       81.96        29.72         0.07         4.34         3.72         3.72 
TCGA-Q1-A73R 
        6.25 

subtype1 subtype2 subtype3 
    0.03     0.03     0.07 
subtype1 subtype2 subtype3 
  177.04   147.39   137.16 
subtype1 subtype2 subtype3 
  12.475   13.265   12.820 
[1] "0.0 - 177.0 (12.5)" "0.0 - 147.4 (13.3)" "0.1 - 137.2 (12.8)"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [13] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [19] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [25] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [37] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [43] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [49] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [55] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [61] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [85] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [91] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [97] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[109] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[133] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[145] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[151] "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [13] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [19] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [25] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [37] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [43] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [49] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [55] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [61] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [85] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [91] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [97] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[109] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[133] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[145] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[151] "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [13] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [19] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [25] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [37] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [43] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [49] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype3"
 [55] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [61] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [85] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [91] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [97] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[103] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[109] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[133] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[145] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[151] "subtype2"
D5V2, continuous
          vv
clus       T1 T2 T3+T4
  subtype1 30 11     1
  subtype2 25  8     2
  subtype3 31 12     1
D5V3, multiclass
D5V4, binary
          cls
clus        0  1
  subtype1 24 17
  subtype2 22 12
  subtype3 32 10
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   24   17
  subtype2   22   12
  subtype3   32   10
   clus
vv  subtype1 subtype2 subtype3
  0       24       22       32
  1       17       12       10
          vv
clus       M0 M1 MX
  subtype1 25  0 18
  subtype2 21  0 16
  subtype3 22  3 20
D5V5, multiclass
          vv
clus       ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  subtype1             0                               63
  subtype2             0                               41
  subtype3             2                               28
          vv
clus       ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  subtype1                                             0
  subtype2                                             0
  subtype3                                             4
          vv
clus       ENDOCERVICAL TYPE OF ADENOCARCINOMA
  subtype1                                   0
  subtype2                                   3
  subtype3                                  13
          vv
clus       ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  subtype1                                         0
  subtype2                                         0
  subtype3                                         1
          vv
clus       MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  subtype1                                            0
  subtype2                                            1
  subtype3                                            2
D5V6, multiclass
D5V7, binary
          cls
clus        0  1
  subtype1 16 47
  subtype2  6 39
  subtype3  8 42
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   16   47
  subtype2    6   39
  subtype3    8   42
     clus
vv    subtype1 subtype2 subtype3
  NO        16        6        8
  YES       47       39       42
D5V8, continuous
D5V9, continuous

Clustering(6) Variable = MIRSEQ_CHIERARCHICAL
D6V1, survival
          sevent
clus2       0  1
  subtype1 46 16
  subtype2 39  7
  subtype3 35  8
subtype1 subtype2 subtype3 
      62       46       43 
subtype1 subtype2 subtype3 
      16        7        8 
$subtype1
TCGA-BI-A0VR TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BJ TCGA-C5-A1BK 
       49.48        68.84        18.74        36.56       144.16       177.04 
TCGA-C5-A1BM TCGA-C5-A1BQ TCGA-C5-A1M5 TCGA-C5-A1M7 TCGA-C5-A1MH TCGA-C5-A1MK 
       82.85        19.86        67.46        46.32        38.99         2.43 
TCGA-C5-A1MP TCGA-C5-A2LY TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7UE 
        3.58        78.35       101.82       134.33        15.48        85.55 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A1O9 TCGA-DS-A1OA 
       87.75        58.88        36.76         2.66         8.75        28.90 
TCGA-DS-A1OB TCGA-DS-A5RQ TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HR 
       28.31        16.83         0.76         0.26         1.74         1.32 
TCGA-EA-A3HS TCGA-EA-A3HT TCGA-EA-A3HU TCGA-EA-A3QE TCGA-EA-A44S TCGA-EA-A50E 
        0.82         0.62         2.66         1.18        12.66         0.26 
TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A78R TCGA-EK-A2RC TCGA-EK-A2RO TCGA-EX-A1H5 
        0.69        14.99         0.39         4.04         0.07        20.35 
TCGA-FU-A3NI TCGA-FU-A3TQ TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ TCGA-HG-A2PA 
        1.45         1.58         1.48         0.82         3.52        25.41 
TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LC TCGA-IR-A3LL 
       21.67        20.78        14.93       147.39       117.40        36.36 
TCGA-LP-A4AU TCGA-LP-A4AW TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BE TCGA-Q1-A5R2 
        0.10         0.89        13.87         0.03         0.07         3.45 
TCGA-Q1-A6DW TCGA-UC-A7PF 
        5.75        93.99 

$subtype2
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BL TCGA-C5-A1MN TCGA-C5-A1MQ TCGA-C5-A2LV 
       57.04        11.44       173.29        40.93        33.90        73.45 
TCGA-C5-A2LX TCGA-C5-A3HD TCGA-C5-A7CH TCGA-C5-A7UC TCGA-C5-A7UH TCGA-C5-A7X3 
       16.14        52.01        25.35        17.19        60.69         9.34 
TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A1OC TCGA-DS-A1OD TCGA-DS-A7WI TCGA-EA-A3Y4 
      117.99       118.65        12.36       127.36         8.28        14.50 
TCGA-EA-A43B TCGA-EA-A5O9 TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2IR 
        1.81        13.91        12.59        45.96         6.64        88.08 
TCGA-EK-A2PG TCGA-EK-A2RB TCGA-EK-A2RD TCGA-EK-A2RE TCGA-EK-A2RN TCGA-EK-A3GJ 
        0.53         0.07         0.03         0.36         0.10         0.10 
TCGA-EK-A3GN TCGA-EX-A3L1 TCGA-EX-A69M TCGA-FU-A23L TCGA-FU-A2QG TCGA-FU-A3HY 
        0.03         6.94         6.12        23.84         0.92         0.66 
TCGA-FU-A5XV TCGA-IR-A3LH TCGA-IR-A3LK TCGA-JW-A5VI TCGA-LP-A4AX TCGA-MY-A5BF 
        1.97        78.71        26.56        16.64         0.07         4.34 
TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-RA-A741 TCGA-UC-A7PD 
        5.85         3.39         3.88        11.67 

$subtype3
TCGA-C5-A1BN TCGA-C5-A1M6 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF TCGA-C5-A1MI 
        5.46        31.40        30.21        35.01        53.16        35.61 
TCGA-C5-A1MJ TCGA-C5-A2LS TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HE TCGA-C5-A3HF 
        2.73        44.22        38.43         0.82        18.02        17.85 
TCGA-C5-A7CM TCGA-DS-A3LQ TCGA-DS-A7WF TCGA-DS-A7WH TCGA-EA-A439 TCGA-EA-A4BA 
        9.67        22.98        16.18         7.33        14.50        12.82 
TCGA-EA-A5FO TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EK-A2R7 TCGA-EK-A2RJ TCGA-EK-A2RL 
        1.48        14.96         0.62         0.59         1.18        23.70 
TCGA-EK-A2RM TCGA-EK-A3GK TCGA-EX-A1H6 TCGA-EX-A449 TCGA-EX-A69L TCGA-FU-A23K 
        2.24         0.10         7.92        14.70         4.47         1.22 
TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A40J TCGA-FU-A57G TCGA-HM-A6W2 TCGA-IR-A3LA 
        2.17         1.02         1.35         1.32         4.11       137.16 
TCGA-IR-A3LB TCGA-IR-A3LF TCGA-IR-A3LI TCGA-MY-A5BD TCGA-Q1-A5R1 TCGA-Q1-A6DV 
       66.81        96.95        81.96        29.72         3.72         3.72 
TCGA-Q1-A73R 
        6.25 

subtype1 subtype2 subtype3 
    0.03     0.03     0.10 
subtype1 subtype2 subtype3 
  177.04   173.29   137.16 
subtype1 subtype2 subtype3 
  14.960   12.015    9.670 
[1] "0.0 - 177.0 (15.0)" "0.0 - 173.3 (12.0)" "0.1 - 137.2 (9.7)" 
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [13] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [19] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [43] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [55] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [73] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [79] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [97] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[103] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[115] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[121] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[133] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[139] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[145] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[151] "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [13] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [19] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [43] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [55] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [73] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [79] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [97] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[103] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[115] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[121] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[133] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[139] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[145] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[151] "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
 [13] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [19] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [43] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype2" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [55] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [61] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [67] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [73] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [79] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [97] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[103] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[115] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[121] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[133] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[139] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[145] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[151] "subtype1"
D6V2, continuous
          vv
clus       T1 T2 T3+T4
  subtype1 35 14     2
  subtype2 24 10     0
  subtype3 27  7     2
D6V3, multiclass
D6V4, binary
          cls
clus        0  1
  subtype1 30 20
  subtype2 23 10
  subtype3 25  9
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   30   20
  subtype2   23   10
  subtype3   25    9
   clus
vv  subtype1 subtype2 subtype3
  0       30       23       25
  1       20       10        9
          vv
clus       M0 M1 MX
  subtype1 32  0 22
  subtype2 18  0 16
  subtype3 18  3 16
D6V5, multiclass
          vv
clus       ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  subtype1             0                               63
  subtype2             0                               50
  subtype3             2                               19
          vv
clus       ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  subtype1                                             0
  subtype2                                             0
  subtype3                                             4
          vv
clus       ENDOCERVICAL TYPE OF ADENOCARCINOMA
  subtype1                                   0
  subtype2                                   0
  subtype3                                  16
          vv
clus       ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  subtype1                                         0
  subtype2                                         0
  subtype3                                         1
          vv
clus       MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  subtype1                                            0
  subtype2                                            0
  subtype3                                            3
D6V6, multiclass
D6V7, binary
          cls
clus        0  1
  subtype1 14 49
  subtype2  8 42
  subtype3  8 37
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   14   49
  subtype2    8   42
  subtype3    8   37
     clus
vv    subtype1 subtype2 subtype3
  NO        14        8        8
  YES       49       42       37
D6V8, continuous
D6V9, continuous

Clustering(7) Variable = MIRSEQ_MATURE_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1 46 14
  subtype2 33 10
  subtype3 41  7
subtype1 subtype2 subtype3 
      60       43       48 
subtype1 subtype2 subtype3 
      14       10        7 
$subtype1
TCGA-BI-A0VR TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI 
       49.48        57.04        11.44        68.84        18.74        36.56 
TCGA-C5-A1BJ TCGA-C5-A1BK TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BN TCGA-C5-A1BQ 
      144.16       177.04       173.29        82.85         5.46        19.86 
TCGA-C5-A1M7 TCGA-C5-A1MH TCGA-C5-A1MK TCGA-C5-A1MN TCGA-C5-A1MQ TCGA-C5-A2LV 
       46.32        38.99         2.43        40.93        33.90        73.45 
TCGA-C5-A2LY TCGA-C5-A3HD TCGA-C5-A7CH TCGA-C5-A7UC TCGA-C5-A7UH TCGA-C5-A7X3 
       78.35        52.01        25.35        17.19        60.69         9.34 
TCGA-DR-A0ZL TCGA-DS-A0VL TCGA-DS-A0VM TCGA-DS-A0VN TCGA-DS-A1OB TCGA-DS-A1OC 
       87.75         2.66       117.99       118.65        28.31        12.36 
TCGA-DS-A1OD TCGA-DS-A3LQ TCGA-EA-A1QT TCGA-EA-A3HU TCGA-EA-A3QE TCGA-EA-A3Y4 
      127.36        22.98         0.26         2.66         1.18        14.50 
TCGA-EK-A2GZ TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2PG TCGA-EK-A2RB TCGA-EK-A2RD 
       12.59        45.96         6.64         0.53         0.07         0.03 
TCGA-EK-A2RE TCGA-EK-A2RN TCGA-EK-A3GJ TCGA-EK-A3GN TCGA-EX-A1H5 TCGA-EX-A3L1 
        0.36         0.10         0.10         0.03        20.35         6.94 
TCGA-EX-A69L TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A3TQ TCGA-FU-A5XV TCGA-IR-A3LK 
        4.47         0.92         0.66         1.58         1.97        26.56 
TCGA-JW-A5VI TCGA-LP-A4AX TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-RA-A741 TCGA-UC-A7PD 
       16.64         0.07         5.85         3.39         3.88        11.67 

$subtype2
TCGA-C5-A1M5 TCGA-C5-A1MP TCGA-C5-A3HF TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL 
       67.46         3.58        17.85       101.82       134.33        15.48 
TCGA-C5-A7UE TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A1O9 TCGA-DS-A1OA TCGA-DS-A5RQ 
       85.55        58.88        36.76         8.75        28.90        16.83 
TCGA-DS-A7WH TCGA-EA-A1QS TCGA-EA-A3HQ TCGA-EA-A3HR TCGA-EA-A3HS TCGA-EA-A3HT 
        7.33         0.76         1.74         1.32         0.82         0.62 
TCGA-EA-A44S TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A78R TCGA-EK-A2RC 
       12.66         0.26         0.69        14.99         0.39         4.04 
TCGA-EK-A2RO TCGA-FU-A3HZ TCGA-FU-A3NI TCGA-FU-A3TX TCGA-FU-A3WB TCGA-FU-A3YQ 
        0.07         1.02         1.45         1.48         0.82         3.52 
TCGA-FU-A57G TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 
        1.32        25.41        21.67        20.78        14.93       147.39 
TCGA-IR-A3LC TCGA-IR-A3LH TCGA-LP-A4AW TCGA-MU-A51Y TCGA-MU-A5YI TCGA-Q1-A5R2 
      117.40        78.71         0.89        13.87         0.03         3.45 
TCGA-UC-A7PF 
       93.99 

$subtype3
TCGA-C5-A1M6 TCGA-C5-A1M8 TCGA-C5-A1M9 TCGA-C5-A1MF TCGA-C5-A1MI TCGA-C5-A1MJ 
       31.40        30.21        35.01        53.16        35.61         2.73 
TCGA-C5-A2LS TCGA-C5-A2LX TCGA-C5-A2M1 TCGA-C5-A2M2 TCGA-C5-A3HE TCGA-C5-A7CM 
       44.22        16.14        38.43         0.82        18.02         9.67 
TCGA-DS-A7WF TCGA-DS-A7WI TCGA-EA-A439 TCGA-EA-A43B TCGA-EA-A4BA TCGA-EA-A5FO 
       16.18         8.28        14.50         1.81        12.82         1.48 
TCGA-EA-A5O9 TCGA-EA-A5ZF TCGA-EA-A6QX TCGA-EK-A2IR TCGA-EK-A2R7 TCGA-EK-A2RJ 
       13.91        14.96         0.62        88.08         0.59         1.18 
TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A3GK TCGA-EX-A1H6 TCGA-EX-A449 TCGA-EX-A69M 
       23.70         2.24         0.10         7.92        14.70         6.12 
TCGA-FU-A23K TCGA-FU-A23L TCGA-FU-A3EO TCGA-FU-A40J TCGA-HM-A6W2 TCGA-IR-A3LA 
        1.22        23.84         2.17         1.35         4.11       137.16 
TCGA-IR-A3LB TCGA-IR-A3LF TCGA-IR-A3LI TCGA-IR-A3LL TCGA-LP-A4AU TCGA-MY-A5BD 
       66.81        96.95        81.96        36.36         0.10        29.72 
TCGA-MY-A5BE TCGA-MY-A5BF TCGA-Q1-A5R1 TCGA-Q1-A6DV TCGA-Q1-A6DW TCGA-Q1-A73R 
        0.07         4.34         3.72         3.72         5.75         6.25 

subtype1 subtype2 subtype3 
    0.03     0.03     0.07 
subtype1 subtype2 subtype3 
  177.04   147.39   137.16 
subtype1 subtype2 subtype3 
  15.570    8.750   11.245 
[1] "0.0 - 177.0 (15.6)" "0.0 - 147.4 (8.8)"  "0.1 - 137.2 (11.2)"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [19] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [25] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [37] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [43] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [49] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [55] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [61] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [85] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [91] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [97] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[103] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[109] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[133] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[145] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[151] "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [19] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [25] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [37] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [43] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [49] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [55] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [61] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [85] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [91] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [97] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[103] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[109] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[133] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[145] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[151] "subtype2"
  [1] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [13] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [19] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [25] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [31] "subtype3" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [37] "subtype2" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [43] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
 [49] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
 [55] "subtype1" "subtype2" "subtype3" "subtype2" "subtype3" "subtype2"
 [61] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
 [67] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [73] "subtype2" "subtype3" "subtype3" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [85] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
 [91] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [97] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[103] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[109] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[121] "subtype2" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[127] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[133] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
[145] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[151] "subtype2"
D7V2, continuous
          vv
clus       T1 T2 T3+T4
  subtype1 31 10     1
  subtype2 25 10     2
  subtype3 30 11     1
D7V3, multiclass
D7V4, binary
          cls
clus        0  1
  subtype1 26 16
  subtype2 23 12
  subtype3 29 11
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   26   16
  subtype2   23   12
  subtype3   29   11
   clus
vv  subtype1 subtype2 subtype3
  0       26       23       29
  1       16       12       11
          vv
clus       M0 M1 MX
  subtype1 25  0 18
  subtype2 23  0 15
  subtype3 20  3 21
D7V5, multiclass
          vv
clus       ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  subtype1             0                               63
  subtype2             0                               42
  subtype3             2                               27
          vv
clus       ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  subtype1                                             0
  subtype2                                             0
  subtype3                                             4
          vv
clus       ENDOCERVICAL TYPE OF ADENOCARCINOMA
  subtype1                                   0
  subtype2                                   2
  subtype3                                  14
          vv
clus       ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  subtype1                                         0
  subtype2                                         0
  subtype3                                         1
          vv
clus       MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  subtype1                                            0
  subtype2                                            1
  subtype3                                            2
D7V6, multiclass
D7V7, binary
          cls
clus        0  1
  subtype1 19 44
  subtype2  5 40
  subtype3  6 44
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   19   44
  subtype2    5   40
  subtype3    6   44
     clus
vv    subtype1 subtype2 subtype3
  NO        19        5        6
  YES       44       40       44
D7V8, continuous
D7V9, continuous

Clustering(8) Variable = MIRSEQ_MATURE_CHIERARCHICAL
D8V1, survival
          sevent
clus2       0  1
  subtype1 42 15
  subtype2 45 10
  subtype3 33  6
subtype1 subtype2 subtype3 
      57       55       39 
subtype1 subtype2 subtype3 
      15       10        6 
$subtype1
TCGA-BI-A0VR TCGA-C5-A1BE TCGA-C5-A1BF TCGA-C5-A1BI TCGA-C5-A1BJ TCGA-C5-A1BK 
       49.48        68.84        18.74        36.56       144.16       177.04 
TCGA-C5-A1BN TCGA-C5-A1M5 TCGA-C5-A1M7 TCGA-C5-A1MH TCGA-C5-A1MK TCGA-C5-A1MP 
        5.46        67.46        46.32        38.99         2.43         3.58 
TCGA-C5-A2LY TCGA-C5-A7CJ TCGA-C5-A7CK TCGA-C5-A7CL TCGA-C5-A7UE TCGA-C5-A7X3 
       78.35       101.82       134.33        15.48        85.55         9.34 
TCGA-DR-A0ZL TCGA-DR-A0ZM TCGA-DS-A0VK TCGA-DS-A0VL TCGA-DS-A1O9 TCGA-DS-A1OA 
       87.75        58.88        36.76         2.66         8.75        28.90 
TCGA-DS-A5RQ TCGA-EA-A1QS TCGA-EA-A1QT TCGA-EA-A3HQ TCGA-EA-A3HS TCGA-EA-A3HT 
       16.83         0.76         0.26         1.74         0.82         0.62 
TCGA-EA-A44S TCGA-EA-A50E TCGA-EA-A5ZD TCGA-EA-A5ZE TCGA-EA-A78R TCGA-EK-A2RC 
       12.66         0.26         0.69        14.99         0.39         4.04 
TCGA-EK-A2RO TCGA-EX-A1H5 TCGA-EX-A3L1 TCGA-FU-A3NI TCGA-FU-A3TX TCGA-FU-A3YQ 
        0.07        20.35         6.94         1.45         1.48         3.52 
TCGA-HG-A2PA TCGA-HM-A3JJ TCGA-HM-A3JK TCGA-HM-A4S6 TCGA-IR-A3L7 TCGA-IR-A3LC 
       25.41        21.67        20.78        14.93       147.39       117.40 
TCGA-IR-A3LL TCGA-LP-A4AU TCGA-LP-A4AW TCGA-MU-A51Y TCGA-MU-A5YI TCGA-MY-A5BE 
       36.36         0.10         0.89        13.87         0.03         0.07 
TCGA-Q1-A5R2 TCGA-Q1-A6DW TCGA-UC-A7PF 
        3.45         5.75        93.99 

$subtype2
TCGA-BI-A0VS TCGA-C5-A0TN TCGA-C5-A1BL TCGA-C5-A1BM TCGA-C5-A1BQ TCGA-C5-A1M8 
       57.04        11.44       173.29        82.85        19.86        30.21 
TCGA-C5-A1M9 TCGA-C5-A1MF TCGA-C5-A1MN TCGA-C5-A1MQ TCGA-C5-A2LV TCGA-C5-A2LX 
       35.01        53.16        40.93        33.90        73.45        16.14 
TCGA-C5-A3HD TCGA-C5-A7CH TCGA-C5-A7UC TCGA-C5-A7UH TCGA-DS-A0VM TCGA-DS-A0VN 
       52.01        25.35        17.19        60.69       117.99       118.65 
TCGA-DS-A1OB TCGA-DS-A1OC TCGA-DS-A1OD TCGA-DS-A7WI TCGA-EA-A3HR TCGA-EA-A3HU 
       28.31        12.36       127.36         8.28         1.32         2.66 
TCGA-EA-A3QE TCGA-EA-A3Y4 TCGA-EA-A43B TCGA-EA-A5O9 TCGA-EA-A6QX TCGA-EK-A2GZ 
        1.18        14.50         1.81        13.91         0.62        12.59 
TCGA-EK-A2H0 TCGA-EK-A2IP TCGA-EK-A2IR TCGA-EK-A2PG TCGA-EK-A2RB TCGA-EK-A2RD 
       45.96         6.64        88.08         0.53         0.07         0.03 
TCGA-EK-A2RE TCGA-EK-A2RN TCGA-EK-A3GJ TCGA-EX-A69L TCGA-EX-A69M TCGA-FU-A23L 
        0.36         0.10         0.10         4.47         6.12        23.84 
TCGA-FU-A2QG TCGA-FU-A3HY TCGA-FU-A3TQ TCGA-FU-A5XV TCGA-IR-A3LH TCGA-IR-A3LK 
        0.92         0.66         1.58         1.97        78.71        26.56 
TCGA-JW-A5VI TCGA-LP-A4AX TCGA-MY-A5BF TCGA-Q1-A5R3 TCGA-Q1-A6DT TCGA-RA-A741 
       16.64         0.07         4.34         5.85         3.39         3.88 
TCGA-UC-A7PD 
       11.67 

$subtype3
TCGA-C5-A1M6 TCGA-C5-A1MI TCGA-C5-A1MJ TCGA-C5-A2LS TCGA-C5-A2M1 TCGA-C5-A2M2 
       31.40        35.61         2.73        44.22        38.43         0.82 
TCGA-C5-A3HE TCGA-C5-A3HF TCGA-C5-A7CM TCGA-DS-A3LQ TCGA-DS-A7WF TCGA-DS-A7WH 
       18.02        17.85         9.67        22.98        16.18         7.33 
TCGA-EA-A439 TCGA-EA-A4BA TCGA-EA-A5FO TCGA-EA-A5ZF TCGA-EK-A2R7 TCGA-EK-A2RJ 
       14.50        12.82         1.48        14.96         0.59         1.18 
TCGA-EK-A2RL TCGA-EK-A2RM TCGA-EK-A3GK TCGA-EK-A3GN TCGA-EX-A1H6 TCGA-EX-A449 
       23.70         2.24         0.10         0.03         7.92        14.70 
TCGA-FU-A23K TCGA-FU-A3EO TCGA-FU-A3HZ TCGA-FU-A3WB TCGA-FU-A40J TCGA-FU-A57G 
        1.22         2.17         1.02         0.82         1.35         1.32 
TCGA-HM-A6W2 TCGA-IR-A3LA TCGA-IR-A3LB TCGA-IR-A3LF TCGA-IR-A3LI TCGA-MY-A5BD 
        4.11       137.16        66.81        96.95        81.96        29.72 
TCGA-Q1-A5R1 TCGA-Q1-A6DV TCGA-Q1-A73R 
        3.72         3.72         6.25 

subtype1 subtype2 subtype3 
    0.03     0.03     0.03 
subtype1 subtype2 subtype3 
  177.04   173.29   137.16 
subtype1 subtype2 subtype3 
   14.93    12.59     7.92 
[1] "0.0 - 177.0 (14.9)" "0.0 - 173.3 (12.6)" "0.0 - 137.2 (7.9)" 
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [13] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [19] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [55] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [61] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [73] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [97] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[103] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[115] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[121] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[133] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[139] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[145] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[151] "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [13] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [19] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [55] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [61] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [73] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [97] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[103] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[115] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[121] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[133] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[139] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[145] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[151] "subtype1"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
 [13] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
 [19] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
 [25] "subtype2" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
 [31] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [37] "subtype1" "subtype1" "subtype3" "subtype2" "subtype1" "subtype2"
 [43] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
 [49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [55] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
 [61] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [73] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
 [79] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [91] "subtype3" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [97] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[103] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[109] "subtype2" "subtype3" "subtype1" "subtype2" "subtype1" "subtype3"
[115] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[121] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype1"
[133] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[139] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
[145] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype2"
[151] "subtype1"
D8V2, continuous
          vv
clus       T1 T2 T3+T4
  subtype1 33 10     2
  subtype2 30 13     1
  subtype3 23  8     1
D8V3, multiclass
D8V4, binary
          cls
clus        0  1
  subtype1 27 17
  subtype2 28 15
  subtype3 23  7
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   27   17
  subtype2   28   15
  subtype3   23    7
   clus
vv  subtype1 subtype2 subtype3
  0       27       28       23
  1       17       15        7
          vv
clus       M0 M1 MX
  subtype1 29  0 19
  subtype2 24  0 20
  subtype3 15  3 15
D8V5, multiclass
          vv
clus       ADENOSQUAMOUS CERVICAL SQUAMOUS CELL CARCINOMA
  subtype1             0                               60
  subtype2             0                               56
  subtype3             2                               16
          vv
clus       ENDOCERVICAL ADENOCARCINOMA OF THE USUAL TYPE
  subtype1                                             0
  subtype2                                             0
  subtype3                                             4
          vv
clus       ENDOCERVICAL TYPE OF ADENOCARCINOMA
  subtype1                                   0
  subtype2                                   1
  subtype3                                  15
          vv
clus       ENDOMETRIOID ADENOCARCINOMA OF ENDOCERVIX
  subtype1                                         0
  subtype2                                         0
  subtype3                                         1
          vv
clus       MUCINOUS ADENOCARCINOMA OF ENDOCERVICAL TYPE
  subtype1                                            0
  subtype2                                            0
  subtype3                                            3
D8V6, multiclass
D8V7, binary
          cls
clus        0  1
  subtype1 13 47
  subtype2 13 44
  subtype3  4 37
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   13   47
  subtype2   13   44
  subtype3    4   37
     clus
vv    subtype1 subtype2 subtype3
  NO        13       13        4
  YES       47       44       37
D8V8, continuous
D8V9, continuous
> q(save="no")
