# Created: Sat May 03 10:12:34 EDT 2014 by cgaadm_deadline
# Job: 513321    server:  http://tcga-gdac-genepattern.broadinstitute.org:8090/gp/
# Module: GDAC_geneListPathwayEnrichment urn:lsid:broadinstitute.org:cancer.genome.analysis:00268:29
# Parameters: 
#    MSigDB_C2 = file:/xchip/cga/reference/MSigDB/c2.cp.v3.0-2.symbols.gmt
#    refseqGeneInfo = file:/xchip/cga/reference/hg18_refseq_download.txt
#    geneList_expr = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_ConsensusClusteringPipeline/COADREAD-TP/8142823/3.GDAC_selectBestcluster.Finished/COADREAD-TP.subclassmarkers.txt
#    geneList_gisticAmp = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Gistic2/COADREAD-TP/8266075/Gistic2_Analysis_8266105/amp_genes.conf_99.txt
#    geneList_gisticDel = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Gistic2/COADREAD-TP/8266075/GDAC_Gistic2Report_8279182/del_genes.conf_99.txt
#    geneList_exprCghCor = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/getCopyNumberExpCor/COADREAD-TP/8279257/1.getCNExpCorrelation.Finished/COADREAD-TP.CORS.tsv
#    geneList_mutation = file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/MergeMutSigRunResults/COADREAD-TP/8210905/COADREAD-TP.sig_genes.txt
#    outPrefix = pathwayEnrich
