
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/DLBC-TP/8278441/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/DLBC-TP/8149255/DLBC-TP.transferedmergedcluster.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=DLBC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=DLBC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/DLBC-TP/8149255/DLBC-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/DLBC-TP/8278441/transformed.cor.cli.txt"

nPatients in clinical file=28, in cluster file=28, common to both=28
[1] "Reduce the number of clustering variables from 26 to 24."
[1] 24 28
[1] "AMP PEAK 1(1Q31.1) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 1(1Q31.1) MUTATED AMP PEAK 1(1Q31.1) WILD-TYPE 
                           9                           19 
  AMP PEAK 1(1Q31.1) MUTATED AMP PEAK 1(1Q31.1) WILD-TYPE 
                           9                           19 
[1] "AMP PEAK 2(2P15) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 2(2P15) MUTATED AMP PEAK 2(2P15) WILD-TYPE 
                         8                         20 
  AMP PEAK 2(2P15) MUTATED AMP PEAK 2(2P15) WILD-TYPE 
                         8                         20 
[1] "AMP PEAK 3(3Q27.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 3(3Q27.3) MUTATED AMP PEAK 3(3Q27.3) WILD-TYPE 
                           7                           21 
  AMP PEAK 3(3Q27.3) MUTATED AMP PEAK 3(3Q27.3) WILD-TYPE 
                           7                           21 
[1] "AMP PEAK 4(8Q24.12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 4(8Q24.12) MUTATED AMP PEAK 4(8Q24.12) WILD-TYPE 
                            6                            22 
  AMP PEAK 4(8Q24.12) MUTATED AMP PEAK 4(8Q24.12) WILD-TYPE 
                            6                            22 
[1] "AMP PEAK 5(12Q13.12) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 5(12Q13.12) MUTATED AMP PEAK 5(12Q13.12) WILD-TYPE 
                             5                             23 
  AMP PEAK 5(12Q13.12) MUTATED AMP PEAK 5(12Q13.12) WILD-TYPE 
                             5                             23 
[1] "AMP PEAK 6(16P11.2) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 6(16P11.2) MUTATED AMP PEAK 6(16P11.2) WILD-TYPE 
                            6                            22 
  AMP PEAK 6(16P11.2) MUTATED AMP PEAK 6(16P11.2) WILD-TYPE 
                            6                            22 
[1] "AMP PEAK 7(XQ27.3) MUTATION ANALYSIS"
[1] 3
  AMP PEAK 7(XQ27.3) MUTATED AMP PEAK 7(XQ27.3) WILD-TYPE 
                           6                           22 
  AMP PEAK 7(XQ27.3) MUTATED AMP PEAK 7(XQ27.3) WILD-TYPE 
                           6                           22 
[1] "DEL PEAK  1(1P22.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  1(1P22.1) MUTATED DEL PEAK  1(1P22.1) WILD-TYPE 
                            4                            24 
  DEL PEAK  1(1P22.1) MUTATED DEL PEAK  1(1P22.1) WILD-TYPE 
                            4                            24 
[1] "DEL PEAK  2(1P13.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE 
                            7                            21 
  DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE 
                            7                            21 
[1] "DEL PEAK  3(1Q43) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                          7                          21 
  DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE 
                          7                          21 
[1] "DEL PEAK  4(2Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  4(2Q23.1) MUTATED DEL PEAK  4(2Q23.1) WILD-TYPE 
                            6                            22 
  DEL PEAK  4(2Q23.1) MUTATED DEL PEAK  4(2Q23.1) WILD-TYPE 
                            6                            22 
[1] "DEL PEAK  5(6Q14.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  5(6Q14.1) MUTATED DEL PEAK  5(6Q14.1) WILD-TYPE 
                            9                            19 
  DEL PEAK  5(6Q14.1) MUTATED DEL PEAK  5(6Q14.1) WILD-TYPE 
                            9                            19 
[1] "DEL PEAK  6(6Q23.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  6(6Q23.3) MUTATED DEL PEAK  6(6Q23.3) WILD-TYPE 
                            7                            21 
  DEL PEAK  6(6Q23.3) MUTATED DEL PEAK  6(6Q23.3) WILD-TYPE 
                            7                            21 
[1] "DEL PEAK  8(8P23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  8(8P23.1) MUTATED DEL PEAK  8(8P23.1) WILD-TYPE 
                            4                            24 
  DEL PEAK  8(8P23.1) MUTATED DEL PEAK  8(8P23.1) WILD-TYPE 
                            4                            24 
[1] "DEL PEAK  9(8Q12.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK  9(8Q12.1) MUTATED DEL PEAK  9(8Q12.1) WILD-TYPE 
                            4                            24 
  DEL PEAK  9(8Q12.1) MUTATED DEL PEAK  9(8Q12.1) WILD-TYPE 
                            4                            24 
[1] "DEL PEAK 10(9P21.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE 
                            9                            19 
  DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE 
                            9                            19 
[1] "DEL PEAK 11(10Q23.31) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 11(10Q23.31) MUTATED DEL PEAK 11(10Q23.31) WILD-TYPE 
                              5                              23 
  DEL PEAK 11(10Q23.31) MUTATED DEL PEAK 11(10Q23.31) WILD-TYPE 
                              5                              23 
[1] "DEL PEAK 12(13Q14.2) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 12(13Q14.2) MUTATED DEL PEAK 12(13Q14.2) WILD-TYPE 
                             3                             25 
  DEL PEAK 12(13Q14.2) MUTATED DEL PEAK 12(13Q14.2) WILD-TYPE 
                             3                             25 
[1] "DEL PEAK 13(13Q33.3) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 13(13Q33.3) MUTATED DEL PEAK 13(13Q33.3) WILD-TYPE 
                             4                             24 
  DEL PEAK 13(13Q33.3) MUTATED DEL PEAK 13(13Q33.3) WILD-TYPE 
                             4                             24 
[1] "DEL PEAK 14(15Q15.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 14(15Q15.1) MUTATED DEL PEAK 14(15Q15.1) WILD-TYPE 
                             8                             20 
  DEL PEAK 14(15Q15.1) MUTATED DEL PEAK 14(15Q15.1) WILD-TYPE 
                             8                             20 
[1] "DEL PEAK 15(15Q21.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 15(15Q21.1) MUTATED DEL PEAK 15(15Q21.1) WILD-TYPE 
                             9                             19 
  DEL PEAK 15(15Q21.1) MUTATED DEL PEAK 15(15Q21.1) WILD-TYPE 
                             9                             19 
[1] "DEL PEAK 16(16P13.13) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 16(16P13.13) MUTATED DEL PEAK 16(16P13.13) WILD-TYPE 
                              4                              24 
  DEL PEAK 16(16P13.13) MUTATED DEL PEAK 16(16P13.13) WILD-TYPE 
                              4                              24 
[1] "DEL PEAK 17(16Q23.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 17(16Q23.1) MUTATED DEL PEAK 17(16Q23.1) WILD-TYPE 
                             5                             23 
  DEL PEAK 17(16Q23.1) MUTATED DEL PEAK 17(16Q23.1) WILD-TYPE 
                             5                             23 
[1] "DEL PEAK 18(17Q24.1) MUTATION ANALYSIS"
[1] 3
  DEL PEAK 18(17Q24.1) MUTATED DEL PEAK 18(17Q24.1) WILD-TYPE 
                             4                             24 
  DEL PEAK 18(17Q24.1) MUTATED DEL PEAK 18(17Q24.1) WILD-TYPE 
                             4                             24 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
[1] "METHLYATION_CNMF"            "MRNASEQ_CNMF"               
[3] "MRNASEQ_CHIERARCHICAL"       "MIRSEQ_CNMF"                
[5] "MIRSEQ_CHIERARCHICAL"        "MIRSEQ_MATURE_CNMF"         
[7] "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 7 rows and 28 columns.

Variable 1:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNASEQ_CNMF':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MIRSEQ_CNMF':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
[1] "METHLYATION_CNMF"            "MRNASEQ_CNMF"               
[3] "MRNASEQ_CHIERARCHICAL"       "MIRSEQ_CNMF"                
[5] "MIRSEQ_CHIERARCHICAL"        "MIRSEQ_MATURE_CNMF"         
[7] "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 28 columns, 0 survival variables, and 7 non-survival variables.
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=2, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=2, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=2, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = AMP PEAK 1(1Q31.1) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(1Q31.1) MUTATED        0      6      3
  AMP PEAK 1(1Q31.1) WILD-TYPE      4      6      9
D1V1, multiclass
        clus
vv       AMP PEAK 1(1Q31.1) MUTATED AMP PEAK 1(1Q31.1) WILD-TYPE
  CLUS_1                          0                            4
  CLUS_2                          6                            6
  CLUS_3                          3                            9
D1V2, binary
                              cls
clus                            0  1
  AMP PEAK 1(1Q31.1) MUTATED    3  6
  AMP PEAK 1(1Q31.1) WILD-TYPE 12  7
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 1(1Q31.1) MUTATED      3    6
  AMP PEAK 1(1Q31.1) WILD-TYPE   12    7
        clus
vv       AMP PEAK 1(1Q31.1) MUTATED AMP PEAK 1(1Q31.1) WILD-TYPE
  CLUS_1                          3                           12
  CLUS_2                          6                            7
D1V3, binary
                              cls
clus                            0  1
  AMP PEAK 1(1Q31.1) MUTATED    6  3
  AMP PEAK 1(1Q31.1) WILD-TYPE  4 15
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 1(1Q31.1) MUTATED      6    3
  AMP PEAK 1(1Q31.1) WILD-TYPE    4   15
        clus
vv       AMP PEAK 1(1Q31.1) MUTATED AMP PEAK 1(1Q31.1) WILD-TYPE
  CLUS_1                          6                            4
  CLUS_2                          3                           15
D1V4, binary
                              cls
clus                            0  1
  AMP PEAK 1(1Q31.1) MUTATED    2  7
  AMP PEAK 1(1Q31.1) WILD-TYPE 12  6
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 1(1Q31.1) MUTATED      2    7
  AMP PEAK 1(1Q31.1) WILD-TYPE   12    6
        clus
vv       AMP PEAK 1(1Q31.1) MUTATED AMP PEAK 1(1Q31.1) WILD-TYPE
  CLUS_1                          2                           12
  CLUS_2                          7                            6
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 1(1Q31.1) MUTATED        0      2      2      3      2
  AMP PEAK 1(1Q31.1) WILD-TYPE      3      1      4      5      5
D1V5, multiclass
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 1(1Q31.1) MUTATED        2      3      4
  AMP PEAK 1(1Q31.1) WILD-TYPE      7      6      5
D1V6, multiclass
        clus
vv       AMP PEAK 1(1Q31.1) MUTATED AMP PEAK 1(1Q31.1) WILD-TYPE
  CLUS_1                          2                            7
  CLUS_2                          3                            6
  CLUS_3                          4                            5
D1V7, binary
                              cls
clus                            0  1
  AMP PEAK 1(1Q31.1) MUTATED    2  7
  AMP PEAK 1(1Q31.1) WILD-TYPE  8 10
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 1(1Q31.1) MUTATED      2    7
  AMP PEAK 1(1Q31.1) WILD-TYPE    8   10
        clus
vv       AMP PEAK 1(1Q31.1) MUTATED AMP PEAK 1(1Q31.1) WILD-TYPE
  CLUS_1                          2                            8
  CLUS_2                          7                           10

Clustering(2) Variable = AMP PEAK 2(2P15) MUTATION ANALYSIS
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(2P15) MUTATED        1      0      7
  AMP PEAK 2(2P15) WILD-TYPE      3     12      5
D2V1, multiclass
        clus
vv       AMP PEAK 2(2P15) MUTATED AMP PEAK 2(2P15) WILD-TYPE
  CLUS_1                        1                          3
  CLUS_2                        0                         12
  CLUS_3                        7                          5
D2V2, binary
                            cls
clus                          0  1
  AMP PEAK 2(2P15) MUTATED    5  3
  AMP PEAK 2(2P15) WILD-TYPE 10 10
[1] "tbl2"
                            cls
clus                         [,1] [,2]
  AMP PEAK 2(2P15) MUTATED      5    3
  AMP PEAK 2(2P15) WILD-TYPE   10   10
        clus
vv       AMP PEAK 2(2P15) MUTATED AMP PEAK 2(2P15) WILD-TYPE
  CLUS_1                        5                         10
  CLUS_2                        3                         10
D2V3, binary
                            cls
clus                          0  1
  AMP PEAK 2(2P15) MUTATED    2  6
  AMP PEAK 2(2P15) WILD-TYPE  8 12
[1] "tbl2"
                            cls
clus                         [,1] [,2]
  AMP PEAK 2(2P15) MUTATED      2    6
  AMP PEAK 2(2P15) WILD-TYPE    8   12
        clus
vv       AMP PEAK 2(2P15) MUTATED AMP PEAK 2(2P15) WILD-TYPE
  CLUS_1                        2                          8
  CLUS_2                        6                         12
D2V4, binary
                            cls
clus                          0  1
  AMP PEAK 2(2P15) MUTATED    4  4
  AMP PEAK 2(2P15) WILD-TYPE 10  9
[1] "tbl2"
                            cls
clus                         [,1] [,2]
  AMP PEAK 2(2P15) MUTATED      4    4
  AMP PEAK 2(2P15) WILD-TYPE   10    9
        clus
vv       AMP PEAK 2(2P15) MUTATED AMP PEAK 2(2P15) WILD-TYPE
  CLUS_1                        4                         10
  CLUS_2                        4                          9
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 2(2P15) MUTATED        0      0      5      0      3
  AMP PEAK 2(2P15) WILD-TYPE      3      3      1      8      4
D2V5, multiclass
                            vv
clus                         CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 2(2P15) MUTATED        3      1      4
  AMP PEAK 2(2P15) WILD-TYPE      6      8      5
D2V6, multiclass
        clus
vv       AMP PEAK 2(2P15) MUTATED AMP PEAK 2(2P15) WILD-TYPE
  CLUS_1                        3                          6
  CLUS_2                        1                          8
  CLUS_3                        4                          5
D2V7, binary
                            cls
clus                          0  1
  AMP PEAK 2(2P15) MUTATED    3  5
  AMP PEAK 2(2P15) WILD-TYPE  7 12
[1] "tbl2"
                            cls
clus                         [,1] [,2]
  AMP PEAK 2(2P15) MUTATED      3    5
  AMP PEAK 2(2P15) WILD-TYPE    7   12
        clus
vv       AMP PEAK 2(2P15) MUTATED AMP PEAK 2(2P15) WILD-TYPE
  CLUS_1                        3                          7
  CLUS_2                        5                         12

Clustering(3) Variable = AMP PEAK 3(3Q27.3) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(3Q27.3) MUTATED        0      4      3
  AMP PEAK 3(3Q27.3) WILD-TYPE      4      8      9
D3V1, multiclass
        clus
vv       AMP PEAK 3(3Q27.3) MUTATED AMP PEAK 3(3Q27.3) WILD-TYPE
  CLUS_1                          0                            4
  CLUS_2                          4                            8
  CLUS_3                          3                            9
D3V2, binary
                              cls
clus                            0  1
  AMP PEAK 3(3Q27.3) MUTATED    5  2
  AMP PEAK 3(3Q27.3) WILD-TYPE 10 11
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 3(3Q27.3) MUTATED      5    2
  AMP PEAK 3(3Q27.3) WILD-TYPE   10   11
        clus
vv       AMP PEAK 3(3Q27.3) MUTATED AMP PEAK 3(3Q27.3) WILD-TYPE
  CLUS_1                          5                           10
  CLUS_2                          2                           11
D3V3, binary
                              cls
clus                            0  1
  AMP PEAK 3(3Q27.3) MUTATED    2  5
  AMP PEAK 3(3Q27.3) WILD-TYPE  8 13
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 3(3Q27.3) MUTATED      2    5
  AMP PEAK 3(3Q27.3) WILD-TYPE    8   13
        clus
vv       AMP PEAK 3(3Q27.3) MUTATED AMP PEAK 3(3Q27.3) WILD-TYPE
  CLUS_1                          2                            8
  CLUS_2                          5                           13
D3V4, binary
                              cls
clus                            0  1
  AMP PEAK 3(3Q27.3) MUTATED    5  2
  AMP PEAK 3(3Q27.3) WILD-TYPE  9 11
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 3(3Q27.3) MUTATED      5    2
  AMP PEAK 3(3Q27.3) WILD-TYPE    9   11
        clus
vv       AMP PEAK 3(3Q27.3) MUTATED AMP PEAK 3(3Q27.3) WILD-TYPE
  CLUS_1                          5                            9
  CLUS_2                          2                           11
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 3(3Q27.3) MUTATED        2      0      0      2      3
  AMP PEAK 3(3Q27.3) WILD-TYPE      1      3      6      6      4
D3V5, multiclass
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 3(3Q27.3) MUTATED        4      2      1
  AMP PEAK 3(3Q27.3) WILD-TYPE      5      7      8
D3V6, multiclass
        clus
vv       AMP PEAK 3(3Q27.3) MUTATED AMP PEAK 3(3Q27.3) WILD-TYPE
  CLUS_1                          4                            5
  CLUS_2                          2                            7
  CLUS_3                          1                            8
D3V7, binary
                              cls
clus                            0  1
  AMP PEAK 3(3Q27.3) MUTATED    5  2
  AMP PEAK 3(3Q27.3) WILD-TYPE  5 15
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 3(3Q27.3) MUTATED      5    2
  AMP PEAK 3(3Q27.3) WILD-TYPE    5   15
        clus
vv       AMP PEAK 3(3Q27.3) MUTATED AMP PEAK 3(3Q27.3) WILD-TYPE
  CLUS_1                          5                            5
  CLUS_2                          2                           15

Clustering(4) Variable = AMP PEAK 4(8Q24.12) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(8Q24.12) MUTATED        1      2      3
  AMP PEAK 4(8Q24.12) WILD-TYPE      3     10      9
D4V1, multiclass
        clus
vv       AMP PEAK 4(8Q24.12) MUTATED AMP PEAK 4(8Q24.12) WILD-TYPE
  CLUS_1                           1                             3
  CLUS_2                           2                            10
  CLUS_3                           3                             9
D4V2, binary
                               cls
clus                             0  1
  AMP PEAK 4(8Q24.12) MUTATED    3  3
  AMP PEAK 4(8Q24.12) WILD-TYPE 12 10
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 4(8Q24.12) MUTATED      3    3
  AMP PEAK 4(8Q24.12) WILD-TYPE   12   10
        clus
vv       AMP PEAK 4(8Q24.12) MUTATED AMP PEAK 4(8Q24.12) WILD-TYPE
  CLUS_1                           3                            12
  CLUS_2                           3                            10
D4V3, binary
                               cls
clus                             0  1
  AMP PEAK 4(8Q24.12) MUTATED    2  4
  AMP PEAK 4(8Q24.12) WILD-TYPE  8 14
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 4(8Q24.12) MUTATED      2    4
  AMP PEAK 4(8Q24.12) WILD-TYPE    8   14
        clus
vv       AMP PEAK 4(8Q24.12) MUTATED AMP PEAK 4(8Q24.12) WILD-TYPE
  CLUS_1                           2                             8
  CLUS_2                           4                            14
D4V4, binary
                               cls
clus                             0  1
  AMP PEAK 4(8Q24.12) MUTATED    3  3
  AMP PEAK 4(8Q24.12) WILD-TYPE 11 10
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 4(8Q24.12) MUTATED      3    3
  AMP PEAK 4(8Q24.12) WILD-TYPE   11   10
        clus
vv       AMP PEAK 4(8Q24.12) MUTATED AMP PEAK 4(8Q24.12) WILD-TYPE
  CLUS_1                           3                            11
  CLUS_2                           3                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 4(8Q24.12) MUTATED        1      0      3      1      1
  AMP PEAK 4(8Q24.12) WILD-TYPE      2      3      3      7      6
D4V5, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 4(8Q24.12) MUTATED        1      1      4
  AMP PEAK 4(8Q24.12) WILD-TYPE      8      8      5
D4V6, multiclass
        clus
vv       AMP PEAK 4(8Q24.12) MUTATED AMP PEAK 4(8Q24.12) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           1                             8
  CLUS_3                           4                             5
D4V7, binary
                               cls
clus                             0  1
  AMP PEAK 4(8Q24.12) MUTATED    2  4
  AMP PEAK 4(8Q24.12) WILD-TYPE  8 13
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 4(8Q24.12) MUTATED      2    4
  AMP PEAK 4(8Q24.12) WILD-TYPE    8   13
        clus
vv       AMP PEAK 4(8Q24.12) MUTATED AMP PEAK 4(8Q24.12) WILD-TYPE
  CLUS_1                           2                             8
  CLUS_2                           4                            13

Clustering(5) Variable = AMP PEAK 5(12Q13.12) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(12Q13.12) MUTATED        0      1      4
  AMP PEAK 5(12Q13.12) WILD-TYPE      4     11      8
D5V1, multiclass
        clus
vv       AMP PEAK 5(12Q13.12) MUTATED AMP PEAK 5(12Q13.12) WILD-TYPE
  CLUS_1                            0                              4
  CLUS_2                            1                             11
  CLUS_3                            4                              8
D5V2, binary
                                cls
clus                              0  1
  AMP PEAK 5(12Q13.12) MUTATED    3  2
  AMP PEAK 5(12Q13.12) WILD-TYPE 12 11
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 5(12Q13.12) MUTATED      3    2
  AMP PEAK 5(12Q13.12) WILD-TYPE   12   11
        clus
vv       AMP PEAK 5(12Q13.12) MUTATED AMP PEAK 5(12Q13.12) WILD-TYPE
  CLUS_1                            3                             12
  CLUS_2                            2                             11
D5V3, binary
                                cls
clus                              0  1
  AMP PEAK 5(12Q13.12) MUTATED    0  5
  AMP PEAK 5(12Q13.12) WILD-TYPE 10 13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 5(12Q13.12) MUTATED      0    5
  AMP PEAK 5(12Q13.12) WILD-TYPE   10   13
        clus
vv       AMP PEAK 5(12Q13.12) MUTATED AMP PEAK 5(12Q13.12) WILD-TYPE
  CLUS_1                            0                             10
  CLUS_2                            5                             13
D5V4, binary
                                cls
clus                              0  1
  AMP PEAK 5(12Q13.12) MUTATED    4  1
  AMP PEAK 5(12Q13.12) WILD-TYPE 10 12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 5(12Q13.12) MUTATED      4    1
  AMP PEAK 5(12Q13.12) WILD-TYPE   10   12
        clus
vv       AMP PEAK 5(12Q13.12) MUTATED AMP PEAK 5(12Q13.12) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            1                             12
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 5(12Q13.12) MUTATED        0      0      2      1      2
  AMP PEAK 5(12Q13.12) WILD-TYPE      3      3      4      7      5
D5V5, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 5(12Q13.12) MUTATED        2      1      2
  AMP PEAK 5(12Q13.12) WILD-TYPE      7      8      7
D5V6, multiclass
        clus
vv       AMP PEAK 5(12Q13.12) MUTATED AMP PEAK 5(12Q13.12) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            1                              8
  CLUS_3                            2                              7
D5V7, binary
                                cls
clus                              0  1
  AMP PEAK 5(12Q13.12) MUTATED    2  3
  AMP PEAK 5(12Q13.12) WILD-TYPE  8 14
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  AMP PEAK 5(12Q13.12) MUTATED      2    3
  AMP PEAK 5(12Q13.12) WILD-TYPE    8   14
        clus
vv       AMP PEAK 5(12Q13.12) MUTATED AMP PEAK 5(12Q13.12) WILD-TYPE
  CLUS_1                            2                              8
  CLUS_2                            3                             14

Clustering(6) Variable = AMP PEAK 6(16P11.2) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(16P11.2) MUTATED        0      1      5
  AMP PEAK 6(16P11.2) WILD-TYPE      4     11      7
D6V1, multiclass
        clus
vv       AMP PEAK 6(16P11.2) MUTATED AMP PEAK 6(16P11.2) WILD-TYPE
  CLUS_1                           0                             4
  CLUS_2                           1                            11
  CLUS_3                           5                             7
D6V2, binary
                               cls
clus                             0  1
  AMP PEAK 6(16P11.2) MUTATED    5  1
  AMP PEAK 6(16P11.2) WILD-TYPE 10 12
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 6(16P11.2) MUTATED      5    1
  AMP PEAK 6(16P11.2) WILD-TYPE   10   12
        clus
vv       AMP PEAK 6(16P11.2) MUTATED AMP PEAK 6(16P11.2) WILD-TYPE
  CLUS_1                           5                            10
  CLUS_2                           1                            12
D6V3, binary
                               cls
clus                             0  1
  AMP PEAK 6(16P11.2) MUTATED    1  5
  AMP PEAK 6(16P11.2) WILD-TYPE  9 13
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 6(16P11.2) MUTATED      1    5
  AMP PEAK 6(16P11.2) WILD-TYPE    9   13
        clus
vv       AMP PEAK 6(16P11.2) MUTATED AMP PEAK 6(16P11.2) WILD-TYPE
  CLUS_1                           1                             9
  CLUS_2                           5                            13
D6V4, binary
                               cls
clus                             0  1
  AMP PEAK 6(16P11.2) MUTATED    4  2
  AMP PEAK 6(16P11.2) WILD-TYPE 10 11
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 6(16P11.2) MUTATED      4    2
  AMP PEAK 6(16P11.2) WILD-TYPE   10   11
        clus
vv       AMP PEAK 6(16P11.2) MUTATED AMP PEAK 6(16P11.2) WILD-TYPE
  CLUS_1                           4                            10
  CLUS_2                           2                            11
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 6(16P11.2) MUTATED        1      0      3      0      2
  AMP PEAK 6(16P11.2) WILD-TYPE      2      3      3      8      5
D6V5, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 6(16P11.2) MUTATED        3      1      2
  AMP PEAK 6(16P11.2) WILD-TYPE      6      8      7
D6V6, multiclass
        clus
vv       AMP PEAK 6(16P11.2) MUTATED AMP PEAK 6(16P11.2) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           1                             8
  CLUS_3                           2                             7
D6V7, binary
                               cls
clus                             0  1
  AMP PEAK 6(16P11.2) MUTATED    3  3
  AMP PEAK 6(16P11.2) WILD-TYPE  7 14
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  AMP PEAK 6(16P11.2) MUTATED      3    3
  AMP PEAK 6(16P11.2) WILD-TYPE    7   14
        clus
vv       AMP PEAK 6(16P11.2) MUTATED AMP PEAK 6(16P11.2) WILD-TYPE
  CLUS_1                           3                             7
  CLUS_2                           3                            14

Clustering(7) Variable = AMP PEAK 7(XQ27.3) MUTATION ANALYSIS
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(XQ27.3) MUTATED        0      1      5
  AMP PEAK 7(XQ27.3) WILD-TYPE      4     11      7
D7V1, multiclass
        clus
vv       AMP PEAK 7(XQ27.3) MUTATED AMP PEAK 7(XQ27.3) WILD-TYPE
  CLUS_1                          0                            4
  CLUS_2                          1                           11
  CLUS_3                          5                            7
D7V2, binary
                              cls
clus                            0  1
  AMP PEAK 7(XQ27.3) MUTATED    4  2
  AMP PEAK 7(XQ27.3) WILD-TYPE 11 11
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 7(XQ27.3) MUTATED      4    2
  AMP PEAK 7(XQ27.3) WILD-TYPE   11   11
        clus
vv       AMP PEAK 7(XQ27.3) MUTATED AMP PEAK 7(XQ27.3) WILD-TYPE
  CLUS_1                          4                           11
  CLUS_2                          2                           11
D7V3, binary
                              cls
clus                            0  1
  AMP PEAK 7(XQ27.3) MUTATED    1  5
  AMP PEAK 7(XQ27.3) WILD-TYPE  9 13
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 7(XQ27.3) MUTATED      1    5
  AMP PEAK 7(XQ27.3) WILD-TYPE    9   13
        clus
vv       AMP PEAK 7(XQ27.3) MUTATED AMP PEAK 7(XQ27.3) WILD-TYPE
  CLUS_1                          1                            9
  CLUS_2                          5                           13
D7V4, binary
                              cls
clus                            0  1
  AMP PEAK 7(XQ27.3) MUTATED    4  2
  AMP PEAK 7(XQ27.3) WILD-TYPE 10 11
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 7(XQ27.3) MUTATED      4    2
  AMP PEAK 7(XQ27.3) WILD-TYPE   10   11
        clus
vv       AMP PEAK 7(XQ27.3) MUTATED AMP PEAK 7(XQ27.3) WILD-TYPE
  CLUS_1                          4                           10
  CLUS_2                          2                           11
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  AMP PEAK 7(XQ27.3) MUTATED        1      0      2      1      2
  AMP PEAK 7(XQ27.3) WILD-TYPE      2      3      4      7      5
D7V5, multiclass
                              vv
clus                           CLUS_1 CLUS_2 CLUS_3
  AMP PEAK 7(XQ27.3) MUTATED        2      1      3
  AMP PEAK 7(XQ27.3) WILD-TYPE      7      8      6
D7V6, multiclass
        clus
vv       AMP PEAK 7(XQ27.3) MUTATED AMP PEAK 7(XQ27.3) WILD-TYPE
  CLUS_1                          2                            7
  CLUS_2                          1                            8
  CLUS_3                          3                            6
D7V7, binary
                              cls
clus                            0  1
  AMP PEAK 7(XQ27.3) MUTATED    3  3
  AMP PEAK 7(XQ27.3) WILD-TYPE  7 14
[1] "tbl2"
                              cls
clus                           [,1] [,2]
  AMP PEAK 7(XQ27.3) MUTATED      3    3
  AMP PEAK 7(XQ27.3) WILD-TYPE    7   14
        clus
vv       AMP PEAK 7(XQ27.3) MUTATED AMP PEAK 7(XQ27.3) WILD-TYPE
  CLUS_1                          3                            7
  CLUS_2                          3                           14

Clustering(8) Variable = DEL PEAK  1(1P22.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P22.1) MUTATED        0      3      1
  DEL PEAK  1(1P22.1) WILD-TYPE      4      9     11
D8V1, multiclass
        clus
vv       DEL PEAK  1(1P22.1) MUTATED DEL PEAK  1(1P22.1) WILD-TYPE
  CLUS_1                           0                             4
  CLUS_2                           3                             9
  CLUS_3                           1                            11
D8V2, binary
                               cls
clus                             0  1
  DEL PEAK  1(1P22.1) MUTATED    2  2
  DEL PEAK  1(1P22.1) WILD-TYPE 13 11
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  1(1P22.1) MUTATED      2    2
  DEL PEAK  1(1P22.1) WILD-TYPE   13   11
        clus
vv       DEL PEAK  1(1P22.1) MUTATED DEL PEAK  1(1P22.1) WILD-TYPE
  CLUS_1                           2                            13
  CLUS_2                           2                            11
D8V3, binary
                               cls
clus                             0  1
  DEL PEAK  1(1P22.1) MUTATED    2  2
  DEL PEAK  1(1P22.1) WILD-TYPE  8 16
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  1(1P22.1) MUTATED      2    2
  DEL PEAK  1(1P22.1) WILD-TYPE    8   16
        clus
vv       DEL PEAK  1(1P22.1) MUTATED DEL PEAK  1(1P22.1) WILD-TYPE
  CLUS_1                           2                             8
  CLUS_2                           2                            16
D8V4, binary
                               cls
clus                             0  1
  DEL PEAK  1(1P22.1) MUTATED    1  3
  DEL PEAK  1(1P22.1) WILD-TYPE 13 10
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  1(1P22.1) MUTATED      1    3
  DEL PEAK  1(1P22.1) WILD-TYPE   13   10
        clus
vv       DEL PEAK  1(1P22.1) MUTATED DEL PEAK  1(1P22.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           3                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  1(1P22.1) MUTATED        0      1      1      1      1
  DEL PEAK  1(1P22.1) WILD-TYPE      3      2      5      7      6
D8V5, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  1(1P22.1) MUTATED        1      1      2
  DEL PEAK  1(1P22.1) WILD-TYPE      8      8      7
D8V6, multiclass
        clus
vv       DEL PEAK  1(1P22.1) MUTATED DEL PEAK  1(1P22.1) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           1                             8
  CLUS_3                           2                             7
D8V7, binary
                               cls
clus                             0  1
  DEL PEAK  1(1P22.1) MUTATED    1  3
  DEL PEAK  1(1P22.1) WILD-TYPE  9 14
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  1(1P22.1) MUTATED      1    3
  DEL PEAK  1(1P22.1) WILD-TYPE    9   14
        clus
vv       DEL PEAK  1(1P22.1) MUTATED DEL PEAK  1(1P22.1) WILD-TYPE
  CLUS_1                           1                             9
  CLUS_2                           3                            14

Clustering(9) Variable = DEL PEAK  2(1P13.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.1) MUTATED        0      5      2
  DEL PEAK  2(1P13.1) WILD-TYPE      4      7     10
D9V1, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           0                             4
  CLUS_2                           5                             7
  CLUS_3                           2                            10
D9V2, binary
                               cls
clus                             0  1
  DEL PEAK  2(1P13.1) MUTATED    3  4
  DEL PEAK  2(1P13.1) WILD-TYPE 12  9
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P13.1) MUTATED      3    4
  DEL PEAK  2(1P13.1) WILD-TYPE   12    9
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           3                            12
  CLUS_2                           4                             9
D9V3, binary
                               cls
clus                             0  1
  DEL PEAK  2(1P13.1) MUTATED    4  3
  DEL PEAK  2(1P13.1) WILD-TYPE  6 15
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P13.1) MUTATED      4    3
  DEL PEAK  2(1P13.1) WILD-TYPE    6   15
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           4                             6
  CLUS_2                           3                            15
D9V4, binary
                               cls
clus                             0  1
  DEL PEAK  2(1P13.1) MUTATED    1  6
  DEL PEAK  2(1P13.1) WILD-TYPE 13  7
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P13.1) MUTATED      1    6
  DEL PEAK  2(1P13.1) WILD-TYPE   13    7
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           6                             7
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  2(1P13.1) MUTATED        0      1      2      3      1
  DEL PEAK  2(1P13.1) WILD-TYPE      3      2      4      5      6
D9V5, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  2(1P13.1) MUTATED        1      4      2
  DEL PEAK  2(1P13.1) WILD-TYPE      8      5      7
D9V6, multiclass
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           4                             5
  CLUS_3                           2                             7
D9V7, binary
                               cls
clus                             0  1
  DEL PEAK  2(1P13.1) MUTATED    1  6
  DEL PEAK  2(1P13.1) WILD-TYPE  9 11
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  2(1P13.1) MUTATED      1    6
  DEL PEAK  2(1P13.1) WILD-TYPE    9   11
        clus
vv       DEL PEAK  2(1P13.1) MUTATED DEL PEAK  2(1P13.1) WILD-TYPE
  CLUS_1                           1                             9
  CLUS_2                           6                            11

Clustering(10) Variable = DEL PEAK  3(1Q43) MUTATION ANALYSIS
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED        0      2      5
  DEL PEAK  3(1Q43) WILD-TYPE      4     10      7
D10V1, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         0                           4
  CLUS_2                         2                          10
  CLUS_3                         5                           7
D10V2, binary
                             cls
clus                           0  1
  DEL PEAK  3(1Q43) MUTATED    4  3
  DEL PEAK  3(1Q43) WILD-TYPE 11 10
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(1Q43) MUTATED      4    3
  DEL PEAK  3(1Q43) WILD-TYPE   11   10
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         4                          11
  CLUS_2                         3                          10
D10V3, binary
                             cls
clus                           0  1
  DEL PEAK  3(1Q43) MUTATED    3  4
  DEL PEAK  3(1Q43) WILD-TYPE  7 14
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(1Q43) MUTATED      3    4
  DEL PEAK  3(1Q43) WILD-TYPE    7   14
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         3                           7
  CLUS_2                         4                          14
D10V4, binary
                             cls
clus                           0  1
  DEL PEAK  3(1Q43) MUTATED    4  3
  DEL PEAK  3(1Q43) WILD-TYPE 10 10
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(1Q43) MUTATED      4    3
  DEL PEAK  3(1Q43) WILD-TYPE   10   10
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         4                          10
  CLUS_2                         3                          10
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  3(1Q43) MUTATED        1      1      1      2      2
  DEL PEAK  3(1Q43) WILD-TYPE      2      2      5      6      5
D10V5, multiclass
                             vv
clus                          CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  3(1Q43) MUTATED        2      2      3
  DEL PEAK  3(1Q43) WILD-TYPE      7      7      6
D10V6, multiclass
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         2                           7
  CLUS_2                         2                           7
  CLUS_3                         3                           6
D10V7, binary
                             cls
clus                           0  1
  DEL PEAK  3(1Q43) MUTATED    3  4
  DEL PEAK  3(1Q43) WILD-TYPE  7 13
[1] "tbl2"
                             cls
clus                          [,1] [,2]
  DEL PEAK  3(1Q43) MUTATED      3    4
  DEL PEAK  3(1Q43) WILD-TYPE    7   13
        clus
vv       DEL PEAK  3(1Q43) MUTATED DEL PEAK  3(1Q43) WILD-TYPE
  CLUS_1                         3                           7
  CLUS_2                         4                          13

Clustering(11) Variable = DEL PEAK  4(2Q23.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q23.1) MUTATED        1      2      3
  DEL PEAK  4(2Q23.1) WILD-TYPE      3     10      9
D11V1, multiclass
        clus
vv       DEL PEAK  4(2Q23.1) MUTATED DEL PEAK  4(2Q23.1) WILD-TYPE
  CLUS_1                           1                             3
  CLUS_2                           2                            10
  CLUS_3                           3                             9
D11V2, binary
                               cls
clus                             0  1
  DEL PEAK  4(2Q23.1) MUTATED    3  3
  DEL PEAK  4(2Q23.1) WILD-TYPE 12 10
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q23.1) MUTATED      3    3
  DEL PEAK  4(2Q23.1) WILD-TYPE   12   10
        clus
vv       DEL PEAK  4(2Q23.1) MUTATED DEL PEAK  4(2Q23.1) WILD-TYPE
  CLUS_1                           3                            12
  CLUS_2                           3                            10
D11V3, binary
                               cls
clus                             0  1
  DEL PEAK  4(2Q23.1) MUTATED    3  3
  DEL PEAK  4(2Q23.1) WILD-TYPE  7 15
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q23.1) MUTATED      3    3
  DEL PEAK  4(2Q23.1) WILD-TYPE    7   15
        clus
vv       DEL PEAK  4(2Q23.1) MUTATED DEL PEAK  4(2Q23.1) WILD-TYPE
  CLUS_1                           3                             7
  CLUS_2                           3                            15
D11V4, binary
                               cls
clus                             0  1
  DEL PEAK  4(2Q23.1) MUTATED    2  3
  DEL PEAK  4(2Q23.1) WILD-TYPE 12 10
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q23.1) MUTATED      2    3
  DEL PEAK  4(2Q23.1) WILD-TYPE   12   10
        clus
vv       DEL PEAK  4(2Q23.1) MUTATED DEL PEAK  4(2Q23.1) WILD-TYPE
  CLUS_1                           2                            12
  CLUS_2                           3                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  4(2Q23.1) MUTATED        0      1      1      2      1
  DEL PEAK  4(2Q23.1) WILD-TYPE      3      2      5      6      6
D11V5, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  4(2Q23.1) MUTATED        1      2      2
  DEL PEAK  4(2Q23.1) WILD-TYPE      8      7      7
D11V6, multiclass
        clus
vv       DEL PEAK  4(2Q23.1) MUTATED DEL PEAK  4(2Q23.1) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           2                             7
  CLUS_3                           2                             7
D11V7, binary
                               cls
clus                             0  1
  DEL PEAK  4(2Q23.1) MUTATED    1  4
  DEL PEAK  4(2Q23.1) WILD-TYPE  9 13
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  4(2Q23.1) MUTATED      1    4
  DEL PEAK  4(2Q23.1) WILD-TYPE    9   13
        clus
vv       DEL PEAK  4(2Q23.1) MUTATED DEL PEAK  4(2Q23.1) WILD-TYPE
  CLUS_1                           1                             9
  CLUS_2                           4                            13

Clustering(12) Variable = DEL PEAK  5(6Q14.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(6Q14.1) MUTATED        0      4      5
  DEL PEAK  5(6Q14.1) WILD-TYPE      4      8      7
D12V1, multiclass
        clus
vv       DEL PEAK  5(6Q14.1) MUTATED DEL PEAK  5(6Q14.1) WILD-TYPE
  CLUS_1                           0                             4
  CLUS_2                           4                             8
  CLUS_3                           5                             7
D12V2, binary
                               cls
clus                             0  1
  DEL PEAK  5(6Q14.1) MUTATED    6  3
  DEL PEAK  5(6Q14.1) WILD-TYPE  9 10
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(6Q14.1) MUTATED      6    3
  DEL PEAK  5(6Q14.1) WILD-TYPE    9   10
        clus
vv       DEL PEAK  5(6Q14.1) MUTATED DEL PEAK  5(6Q14.1) WILD-TYPE
  CLUS_1                           6                             9
  CLUS_2                           3                            10
D12V3, binary
                               cls
clus                             0  1
  DEL PEAK  5(6Q14.1) MUTATED    2  7
  DEL PEAK  5(6Q14.1) WILD-TYPE  8 11
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(6Q14.1) MUTATED      2    7
  DEL PEAK  5(6Q14.1) WILD-TYPE    8   11
        clus
vv       DEL PEAK  5(6Q14.1) MUTATED DEL PEAK  5(6Q14.1) WILD-TYPE
  CLUS_1                           2                             8
  CLUS_2                           7                            11
D12V4, binary
                               cls
clus                             0  1
  DEL PEAK  5(6Q14.1) MUTATED    7  2
  DEL PEAK  5(6Q14.1) WILD-TYPE  7 11
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(6Q14.1) MUTATED      7    2
  DEL PEAK  5(6Q14.1) WILD-TYPE    7   11
        clus
vv       DEL PEAK  5(6Q14.1) MUTATED DEL PEAK  5(6Q14.1) WILD-TYPE
  CLUS_1                           7                             7
  CLUS_2                           2                            11
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  5(6Q14.1) MUTATED        2      2      0      2      3
  DEL PEAK  5(6Q14.1) WILD-TYPE      1      1      6      6      4
D12V5, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  5(6Q14.1) MUTATED        4      2      3
  DEL PEAK  5(6Q14.1) WILD-TYPE      5      7      6
D12V6, multiclass
        clus
vv       DEL PEAK  5(6Q14.1) MUTATED DEL PEAK  5(6Q14.1) WILD-TYPE
  CLUS_1                           4                             5
  CLUS_2                           2                             7
  CLUS_3                           3                             6
D12V7, binary
                               cls
clus                             0  1
  DEL PEAK  5(6Q14.1) MUTATED    5  4
  DEL PEAK  5(6Q14.1) WILD-TYPE  5 13
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  5(6Q14.1) MUTATED      5    4
  DEL PEAK  5(6Q14.1) WILD-TYPE    5   13
        clus
vv       DEL PEAK  5(6Q14.1) MUTATED DEL PEAK  5(6Q14.1) WILD-TYPE
  CLUS_1                           5                             5
  CLUS_2                           4                            13

Clustering(13) Variable = DEL PEAK  6(6Q23.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(6Q23.3) MUTATED        0      2      5
  DEL PEAK  6(6Q23.3) WILD-TYPE      4     10      7
D13V1, multiclass
        clus
vv       DEL PEAK  6(6Q23.3) MUTATED DEL PEAK  6(6Q23.3) WILD-TYPE
  CLUS_1                           0                             4
  CLUS_2                           2                            10
  CLUS_3                           5                             7
D13V2, binary
                               cls
clus                             0  1
  DEL PEAK  6(6Q23.3) MUTATED    6  1
  DEL PEAK  6(6Q23.3) WILD-TYPE  9 12
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(6Q23.3) MUTATED      6    1
  DEL PEAK  6(6Q23.3) WILD-TYPE    9   12
        clus
vv       DEL PEAK  6(6Q23.3) MUTATED DEL PEAK  6(6Q23.3) WILD-TYPE
  CLUS_1                           6                             9
  CLUS_2                           1                            12
D13V3, binary
                               cls
clus                             0  1
  DEL PEAK  6(6Q23.3) MUTATED    0  7
  DEL PEAK  6(6Q23.3) WILD-TYPE 10 11
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(6Q23.3) MUTATED      0    7
  DEL PEAK  6(6Q23.3) WILD-TYPE   10   11
        clus
vv       DEL PEAK  6(6Q23.3) MUTATED DEL PEAK  6(6Q23.3) WILD-TYPE
  CLUS_1                           0                            10
  CLUS_2                           7                            11
D13V4, binary
                               cls
clus                             0  1
  DEL PEAK  6(6Q23.3) MUTATED    5  2
  DEL PEAK  6(6Q23.3) WILD-TYPE  9 11
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(6Q23.3) MUTATED      5    2
  DEL PEAK  6(6Q23.3) WILD-TYPE    9   11
        clus
vv       DEL PEAK  6(6Q23.3) MUTATED DEL PEAK  6(6Q23.3) WILD-TYPE
  CLUS_1                           5                             9
  CLUS_2                           2                            11
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  6(6Q23.3) MUTATED        0      2      1      1      3
  DEL PEAK  6(6Q23.3) WILD-TYPE      3      1      5      7      4
D13V5, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  6(6Q23.3) MUTATED        3      2      2
  DEL PEAK  6(6Q23.3) WILD-TYPE      6      7      7
D13V6, multiclass
        clus
vv       DEL PEAK  6(6Q23.3) MUTATED DEL PEAK  6(6Q23.3) WILD-TYPE
  CLUS_1                           3                             6
  CLUS_2                           2                             7
  CLUS_3                           2                             7
D13V7, binary
                               cls
clus                             0  1
  DEL PEAK  6(6Q23.3) MUTATED    3  4
  DEL PEAK  6(6Q23.3) WILD-TYPE  7 13
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  6(6Q23.3) MUTATED      3    4
  DEL PEAK  6(6Q23.3) WILD-TYPE    7   13
        clus
vv       DEL PEAK  6(6Q23.3) MUTATED DEL PEAK  6(6Q23.3) WILD-TYPE
  CLUS_1                           3                             7
  CLUS_2                           4                            13

Clustering(14) Variable = DEL PEAK  8(8P23.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(8P23.1) MUTATED        0      2      2
  DEL PEAK  8(8P23.1) WILD-TYPE      4     10     10
D14V1, multiclass
        clus
vv       DEL PEAK  8(8P23.1) MUTATED DEL PEAK  8(8P23.1) WILD-TYPE
  CLUS_1                           0                             4
  CLUS_2                           2                            10
  CLUS_3                           2                            10
D14V2, binary
                               cls
clus                             0  1
  DEL PEAK  8(8P23.1) MUTATED    1  3
  DEL PEAK  8(8P23.1) WILD-TYPE 14 10
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(8P23.1) MUTATED      1    3
  DEL PEAK  8(8P23.1) WILD-TYPE   14   10
        clus
vv       DEL PEAK  8(8P23.1) MUTATED DEL PEAK  8(8P23.1) WILD-TYPE
  CLUS_1                           1                            14
  CLUS_2                           3                            10
D14V3, binary
                               cls
clus                             0  1
  DEL PEAK  8(8P23.1) MUTATED    3  1
  DEL PEAK  8(8P23.1) WILD-TYPE  7 17
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(8P23.1) MUTATED      3    1
  DEL PEAK  8(8P23.1) WILD-TYPE    7   17
        clus
vv       DEL PEAK  8(8P23.1) MUTATED DEL PEAK  8(8P23.1) WILD-TYPE
  CLUS_1                           3                             7
  CLUS_2                           1                            17
D14V4, binary
                               cls
clus                             0  1
  DEL PEAK  8(8P23.1) MUTATED    1  3
  DEL PEAK  8(8P23.1) WILD-TYPE 13 10
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(8P23.1) MUTATED      1    3
  DEL PEAK  8(8P23.1) WILD-TYPE   13   10
        clus
vv       DEL PEAK  8(8P23.1) MUTATED DEL PEAK  8(8P23.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           3                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  8(8P23.1) MUTATED        0      1      0      2      1
  DEL PEAK  8(8P23.1) WILD-TYPE      3      2      6      6      6
D14V5, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  8(8P23.1) MUTATED        1      2      1
  DEL PEAK  8(8P23.1) WILD-TYPE      8      7      8
D14V6, multiclass
        clus
vv       DEL PEAK  8(8P23.1) MUTATED DEL PEAK  8(8P23.1) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           2                             7
  CLUS_3                           1                             8
D14V7, binary
                               cls
clus                             0  1
  DEL PEAK  8(8P23.1) MUTATED    1  3
  DEL PEAK  8(8P23.1) WILD-TYPE  9 14
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  8(8P23.1) MUTATED      1    3
  DEL PEAK  8(8P23.1) WILD-TYPE    9   14
        clus
vv       DEL PEAK  8(8P23.1) MUTATED DEL PEAK  8(8P23.1) WILD-TYPE
  CLUS_1                           1                             9
  CLUS_2                           3                            14

Clustering(15) Variable = DEL PEAK  9(8Q12.1) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(8Q12.1) MUTATED        0      2      2
  DEL PEAK  9(8Q12.1) WILD-TYPE      4     10     10
D15V1, multiclass
        clus
vv       DEL PEAK  9(8Q12.1) MUTATED DEL PEAK  9(8Q12.1) WILD-TYPE
  CLUS_1                           0                             4
  CLUS_2                           2                            10
  CLUS_3                           2                            10
D15V2, binary
                               cls
clus                             0  1
  DEL PEAK  9(8Q12.1) MUTATED    1  3
  DEL PEAK  9(8Q12.1) WILD-TYPE 14 10
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(8Q12.1) MUTATED      1    3
  DEL PEAK  9(8Q12.1) WILD-TYPE   14   10
        clus
vv       DEL PEAK  9(8Q12.1) MUTATED DEL PEAK  9(8Q12.1) WILD-TYPE
  CLUS_1                           1                            14
  CLUS_2                           3                            10
D15V3, binary
                               cls
clus                             0  1
  DEL PEAK  9(8Q12.1) MUTATED    3  1
  DEL PEAK  9(8Q12.1) WILD-TYPE  7 17
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(8Q12.1) MUTATED      3    1
  DEL PEAK  9(8Q12.1) WILD-TYPE    7   17
        clus
vv       DEL PEAK  9(8Q12.1) MUTATED DEL PEAK  9(8Q12.1) WILD-TYPE
  CLUS_1                           3                             7
  CLUS_2                           1                            17
D15V4, binary
                               cls
clus                             0  1
  DEL PEAK  9(8Q12.1) MUTATED    1  3
  DEL PEAK  9(8Q12.1) WILD-TYPE 13 10
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(8Q12.1) MUTATED      1    3
  DEL PEAK  9(8Q12.1) WILD-TYPE   13   10
        clus
vv       DEL PEAK  9(8Q12.1) MUTATED DEL PEAK  9(8Q12.1) WILD-TYPE
  CLUS_1                           1                            13
  CLUS_2                           3                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK  9(8Q12.1) MUTATED        0      1      1      1      1
  DEL PEAK  9(8Q12.1) WILD-TYPE      3      2      5      7      6
D15V5, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK  9(8Q12.1) MUTATED        1      1      2
  DEL PEAK  9(8Q12.1) WILD-TYPE      8      8      7
D15V6, multiclass
        clus
vv       DEL PEAK  9(8Q12.1) MUTATED DEL PEAK  9(8Q12.1) WILD-TYPE
  CLUS_1                           1                             8
  CLUS_2                           1                             8
  CLUS_3                           2                             7
D15V7, binary
                               cls
clus                             0  1
  DEL PEAK  9(8Q12.1) MUTATED    1  3
  DEL PEAK  9(8Q12.1) WILD-TYPE  9 14
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK  9(8Q12.1) MUTATED      1    3
  DEL PEAK  9(8Q12.1) WILD-TYPE    9   14
        clus
vv       DEL PEAK  9(8Q12.1) MUTATED DEL PEAK  9(8Q12.1) WILD-TYPE
  CLUS_1                           1                             9
  CLUS_2                           3                            14

Clustering(16) Variable = DEL PEAK 10(9P21.3) MUTATION ANALYSIS
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(9P21.3) MUTATED        0      2      7
  DEL PEAK 10(9P21.3) WILD-TYPE      4     10      5
D16V1, multiclass
        clus
vv       DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE
  CLUS_1                           0                             4
  CLUS_2                           2                            10
  CLUS_3                           7                             5
D16V2, binary
                               cls
clus                             0  1
  DEL PEAK 10(9P21.3) MUTATED    7  2
  DEL PEAK 10(9P21.3) WILD-TYPE  8 11
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(9P21.3) MUTATED      7    2
  DEL PEAK 10(9P21.3) WILD-TYPE    8   11
        clus
vv       DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE
  CLUS_1                           7                             8
  CLUS_2                           2                            11
D16V3, binary
                               cls
clus                             0  1
  DEL PEAK 10(9P21.3) MUTATED    2  7
  DEL PEAK 10(9P21.3) WILD-TYPE  8 11
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(9P21.3) MUTATED      2    7
  DEL PEAK 10(9P21.3) WILD-TYPE    8   11
        clus
vv       DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE
  CLUS_1                           2                             8
  CLUS_2                           7                            11
D16V4, binary
                               cls
clus                             0  1
  DEL PEAK 10(9P21.3) MUTATED    6  3
  DEL PEAK 10(9P21.3) WILD-TYPE  8 10
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(9P21.3) MUTATED      6    3
  DEL PEAK 10(9P21.3) WILD-TYPE    8   10
        clus
vv       DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE
  CLUS_1                           6                             8
  CLUS_2                           3                            10
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 10(9P21.3) MUTATED        1      3      0      1      4
  DEL PEAK 10(9P21.3) WILD-TYPE      2      0      6      7      3
D16V5, multiclass
                               vv
clus                            CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 10(9P21.3) MUTATED        4      1      4
  DEL PEAK 10(9P21.3) WILD-TYPE      5      8      5
D16V6, multiclass
        clus
vv       DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE
  CLUS_1                           4                             5
  CLUS_2                           1                             8
  CLUS_3                           4                             5
D16V7, binary
                               cls
clus                             0  1
  DEL PEAK 10(9P21.3) MUTATED    5  4
  DEL PEAK 10(9P21.3) WILD-TYPE  5 13
[1] "tbl2"
                               cls
clus                            [,1] [,2]
  DEL PEAK 10(9P21.3) MUTATED      5    4
  DEL PEAK 10(9P21.3) WILD-TYPE    5   13
        clus
vv       DEL PEAK 10(9P21.3) MUTATED DEL PEAK 10(9P21.3) WILD-TYPE
  CLUS_1                           5                             5
  CLUS_2                           4                            13

Clustering(17) Variable = DEL PEAK 11(10Q23.31) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(10Q23.31) MUTATED        0      3      2
  DEL PEAK 11(10Q23.31) WILD-TYPE      4      9     10
D17V1, multiclass
        clus
vv       DEL PEAK 11(10Q23.31) MUTATED DEL PEAK 11(10Q23.31) WILD-TYPE
  CLUS_1                             0                               4
  CLUS_2                             3                               9
  CLUS_3                             2                              10
D17V2, binary
                                 cls
clus                               0  1
  DEL PEAK 11(10Q23.31) MUTATED    2  3
  DEL PEAK 11(10Q23.31) WILD-TYPE 13 10
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 11(10Q23.31) MUTATED      2    3
  DEL PEAK 11(10Q23.31) WILD-TYPE   13   10
        clus
vv       DEL PEAK 11(10Q23.31) MUTATED DEL PEAK 11(10Q23.31) WILD-TYPE
  CLUS_1                             2                              13
  CLUS_2                             3                              10
D17V3, binary
                                 cls
clus                               0  1
  DEL PEAK 11(10Q23.31) MUTATED    3  2
  DEL PEAK 11(10Q23.31) WILD-TYPE  7 16
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 11(10Q23.31) MUTATED      3    2
  DEL PEAK 11(10Q23.31) WILD-TYPE    7   16
        clus
vv       DEL PEAK 11(10Q23.31) MUTATED DEL PEAK 11(10Q23.31) WILD-TYPE
  CLUS_1                             3                               7
  CLUS_2                             2                              16
D17V4, binary
                                 cls
clus                               0  1
  DEL PEAK 11(10Q23.31) MUTATED    2  3
  DEL PEAK 11(10Q23.31) WILD-TYPE 12 10
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 11(10Q23.31) MUTATED      2    3
  DEL PEAK 11(10Q23.31) WILD-TYPE   12   10
        clus
vv       DEL PEAK 11(10Q23.31) MUTATED DEL PEAK 11(10Q23.31) WILD-TYPE
  CLUS_1                             2                              12
  CLUS_2                             3                              10
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 11(10Q23.31) MUTATED        1      0      2      1      1
  DEL PEAK 11(10Q23.31) WILD-TYPE      2      3      4      7      6
D17V5, multiclass
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 11(10Q23.31) MUTATED        2      1      2
  DEL PEAK 11(10Q23.31) WILD-TYPE      7      8      7
D17V6, multiclass
        clus
vv       DEL PEAK 11(10Q23.31) MUTATED DEL PEAK 11(10Q23.31) WILD-TYPE
  CLUS_1                             2                               7
  CLUS_2                             1                               8
  CLUS_3                             2                               7
D17V7, binary
                                 cls
clus                               0  1
  DEL PEAK 11(10Q23.31) MUTATED    2  3
  DEL PEAK 11(10Q23.31) WILD-TYPE  8 14
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 11(10Q23.31) MUTATED      2    3
  DEL PEAK 11(10Q23.31) WILD-TYPE    8   14
        clus
vv       DEL PEAK 11(10Q23.31) MUTATED DEL PEAK 11(10Q23.31) WILD-TYPE
  CLUS_1                             2                               8
  CLUS_2                             3                              14

Clustering(18) Variable = DEL PEAK 12(13Q14.2) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(13Q14.2) MUTATED        0      1      2
  DEL PEAK 12(13Q14.2) WILD-TYPE      4     11     10
D18V1, multiclass
        clus
vv       DEL PEAK 12(13Q14.2) MUTATED DEL PEAK 12(13Q14.2) WILD-TYPE
  CLUS_1                            0                              4
  CLUS_2                            1                             11
  CLUS_3                            2                             10
D18V2, binary
                                cls
clus                              0  1
  DEL PEAK 12(13Q14.2) MUTATED    2  1
  DEL PEAK 12(13Q14.2) WILD-TYPE 13 12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 12(13Q14.2) MUTATED      2    1
  DEL PEAK 12(13Q14.2) WILD-TYPE   13   12
        clus
vv       DEL PEAK 12(13Q14.2) MUTATED DEL PEAK 12(13Q14.2) WILD-TYPE
  CLUS_1                            2                             13
  CLUS_2                            1                             12
D18V3, binary
                                cls
clus                              0  1
  DEL PEAK 12(13Q14.2) MUTATED    1  2
  DEL PEAK 12(13Q14.2) WILD-TYPE  9 16
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 12(13Q14.2) MUTATED      1    2
  DEL PEAK 12(13Q14.2) WILD-TYPE    9   16
        clus
vv       DEL PEAK 12(13Q14.2) MUTATED DEL PEAK 12(13Q14.2) WILD-TYPE
  CLUS_1                            1                              9
  CLUS_2                            2                             16
D18V4, binary
                                cls
clus                              0  1
  DEL PEAK 12(13Q14.2) MUTATED    2  1
  DEL PEAK 12(13Q14.2) WILD-TYPE 12 12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 12(13Q14.2) MUTATED      2    1
  DEL PEAK 12(13Q14.2) WILD-TYPE   12   12
        clus
vv       DEL PEAK 12(13Q14.2) MUTATED DEL PEAK 12(13Q14.2) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            1                             12
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 12(13Q14.2) MUTATED        1      0      2      0      0
  DEL PEAK 12(13Q14.2) WILD-TYPE      2      3      4      8      7
D18V5, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 12(13Q14.2) MUTATED        1      0      2
  DEL PEAK 12(13Q14.2) WILD-TYPE      8      9      7
D18V6, multiclass
        clus
vv       DEL PEAK 12(13Q14.2) MUTATED DEL PEAK 12(13Q14.2) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            0                              9
  CLUS_3                            2                              7
D18V7, binary
                                cls
clus                              0  1
  DEL PEAK 12(13Q14.2) MUTATED    1  2
  DEL PEAK 12(13Q14.2) WILD-TYPE  9 15
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 12(13Q14.2) MUTATED      1    2
  DEL PEAK 12(13Q14.2) WILD-TYPE    9   15
        clus
vv       DEL PEAK 12(13Q14.2) MUTATED DEL PEAK 12(13Q14.2) WILD-TYPE
  CLUS_1                            1                              9
  CLUS_2                            2                             15

Clustering(19) Variable = DEL PEAK 13(13Q33.3) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(13Q33.3) MUTATED        1      1      2
  DEL PEAK 13(13Q33.3) WILD-TYPE      3     11     10
D19V1, multiclass
        clus
vv       DEL PEAK 13(13Q33.3) MUTATED DEL PEAK 13(13Q33.3) WILD-TYPE
  CLUS_1                            1                              3
  CLUS_2                            1                             11
  CLUS_3                            2                             10
D19V2, binary
                                cls
clus                              0  1
  DEL PEAK 13(13Q33.3) MUTATED    4  0
  DEL PEAK 13(13Q33.3) WILD-TYPE 11 13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(13Q33.3) MUTATED      4    0
  DEL PEAK 13(13Q33.3) WILD-TYPE   11   13
        clus
vv       DEL PEAK 13(13Q33.3) MUTATED DEL PEAK 13(13Q33.3) WILD-TYPE
  CLUS_1                            4                             11
  CLUS_2                            0                             13
D19V3, binary
                                cls
clus                              0  1
  DEL PEAK 13(13Q33.3) MUTATED    0  4
  DEL PEAK 13(13Q33.3) WILD-TYPE 10 14
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(13Q33.3) MUTATED      0    4
  DEL PEAK 13(13Q33.3) WILD-TYPE   10   14
        clus
vv       DEL PEAK 13(13Q33.3) MUTATED DEL PEAK 13(13Q33.3) WILD-TYPE
  CLUS_1                            0                             10
  CLUS_2                            4                             14
D19V4, binary
                                cls
clus                              0  1
  DEL PEAK 13(13Q33.3) MUTATED    3  0
  DEL PEAK 13(13Q33.3) WILD-TYPE 11 13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(13Q33.3) MUTATED      3    0
  DEL PEAK 13(13Q33.3) WILD-TYPE   11   13
        clus
vv       DEL PEAK 13(13Q33.3) MUTATED DEL PEAK 13(13Q33.3) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            0                             13
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 13(13Q33.3) MUTATED        2      0      1      0      0
  DEL PEAK 13(13Q33.3) WILD-TYPE      1      3      5      8      7
D19V5, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 13(13Q33.3) MUTATED        1      0      2
  DEL PEAK 13(13Q33.3) WILD-TYPE      8      9      7
D19V6, multiclass
        clus
vv       DEL PEAK 13(13Q33.3) MUTATED DEL PEAK 13(13Q33.3) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            0                              9
  CLUS_3                            2                              7
D19V7, binary
                                cls
clus                              0  1
  DEL PEAK 13(13Q33.3) MUTATED    2  1
  DEL PEAK 13(13Q33.3) WILD-TYPE  8 16
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 13(13Q33.3) MUTATED      2    1
  DEL PEAK 13(13Q33.3) WILD-TYPE    8   16
        clus
vv       DEL PEAK 13(13Q33.3) MUTATED DEL PEAK 13(13Q33.3) WILD-TYPE
  CLUS_1                            2                              8
  CLUS_2                            1                             16

Clustering(20) Variable = DEL PEAK 14(15Q15.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(15Q15.1) MUTATED        2      4      2
  DEL PEAK 14(15Q15.1) WILD-TYPE      2      8     10
D20V1, multiclass
        clus
vv       DEL PEAK 14(15Q15.1) MUTATED DEL PEAK 14(15Q15.1) WILD-TYPE
  CLUS_1                            2                              2
  CLUS_2                            4                              8
  CLUS_3                            2                             10
D20V2, binary
                                cls
clus                              0  1
  DEL PEAK 14(15Q15.1) MUTATED    4  4
  DEL PEAK 14(15Q15.1) WILD-TYPE 11  9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 14(15Q15.1) MUTATED      4    4
  DEL PEAK 14(15Q15.1) WILD-TYPE   11    9
        clus
vv       DEL PEAK 14(15Q15.1) MUTATED DEL PEAK 14(15Q15.1) WILD-TYPE
  CLUS_1                            4                             11
  CLUS_2                            4                              9
D20V3, binary
                                cls
clus                              0  1
  DEL PEAK 14(15Q15.1) MUTATED    4  4
  DEL PEAK 14(15Q15.1) WILD-TYPE  6 14
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 14(15Q15.1) MUTATED      4    4
  DEL PEAK 14(15Q15.1) WILD-TYPE    6   14
        clus
vv       DEL PEAK 14(15Q15.1) MUTATED DEL PEAK 14(15Q15.1) WILD-TYPE
  CLUS_1                            4                              6
  CLUS_2                            4                             14
D20V4, binary
                                cls
clus                              0  1
  DEL PEAK 14(15Q15.1) MUTATED    3  4
  DEL PEAK 14(15Q15.1) WILD-TYPE 11  9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 14(15Q15.1) MUTATED      3    4
  DEL PEAK 14(15Q15.1) WILD-TYPE   11    9
        clus
vv       DEL PEAK 14(15Q15.1) MUTATED DEL PEAK 14(15Q15.1) WILD-TYPE
  CLUS_1                            3                             11
  CLUS_2                            4                              9
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 14(15Q15.1) MUTATED        1      0      3      2      1
  DEL PEAK 14(15Q15.1) WILD-TYPE      2      3      3      6      6
D20V5, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 14(15Q15.1) MUTATED        2      2      3
  DEL PEAK 14(15Q15.1) WILD-TYPE      7      7      6
D20V6, multiclass
        clus
vv       DEL PEAK 14(15Q15.1) MUTATED DEL PEAK 14(15Q15.1) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            2                              7
  CLUS_3                            3                              6
D20V7, binary
                                cls
clus                              0  1
  DEL PEAK 14(15Q15.1) MUTATED    2  5
  DEL PEAK 14(15Q15.1) WILD-TYPE  8 12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 14(15Q15.1) MUTATED      2    5
  DEL PEAK 14(15Q15.1) WILD-TYPE    8   12
        clus
vv       DEL PEAK 14(15Q15.1) MUTATED DEL PEAK 14(15Q15.1) WILD-TYPE
  CLUS_1                            2                              8
  CLUS_2                            5                             12

Clustering(21) Variable = DEL PEAK 15(15Q21.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(15Q21.1) MUTATED        2      4      3
  DEL PEAK 15(15Q21.1) WILD-TYPE      2      8      9
D21V1, multiclass
        clus
vv       DEL PEAK 15(15Q21.1) MUTATED DEL PEAK 15(15Q21.1) WILD-TYPE
  CLUS_1                            2                              2
  CLUS_2                            4                              8
  CLUS_3                            3                              9
D21V2, binary
                                cls
clus                              0  1
  DEL PEAK 15(15Q21.1) MUTATED    5  4
  DEL PEAK 15(15Q21.1) WILD-TYPE 10  9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(15Q21.1) MUTATED      5    4
  DEL PEAK 15(15Q21.1) WILD-TYPE   10    9
        clus
vv       DEL PEAK 15(15Q21.1) MUTATED DEL PEAK 15(15Q21.1) WILD-TYPE
  CLUS_1                            5                             10
  CLUS_2                            4                              9
D21V3, binary
                                cls
clus                              0  1
  DEL PEAK 15(15Q21.1) MUTATED    4  5
  DEL PEAK 15(15Q21.1) WILD-TYPE  6 13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(15Q21.1) MUTATED      4    5
  DEL PEAK 15(15Q21.1) WILD-TYPE    6   13
        clus
vv       DEL PEAK 15(15Q21.1) MUTATED DEL PEAK 15(15Q21.1) WILD-TYPE
  CLUS_1                            4                              6
  CLUS_2                            5                             13
D21V4, binary
                                cls
clus                              0  1
  DEL PEAK 15(15Q21.1) MUTATED    4  4
  DEL PEAK 15(15Q21.1) WILD-TYPE 10  9
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(15Q21.1) MUTATED      4    4
  DEL PEAK 15(15Q21.1) WILD-TYPE   10    9
        clus
vv       DEL PEAK 15(15Q21.1) MUTATED DEL PEAK 15(15Q21.1) WILD-TYPE
  CLUS_1                            4                             10
  CLUS_2                            4                              9
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 15(15Q21.1) MUTATED        1      0      3      2      2
  DEL PEAK 15(15Q21.1) WILD-TYPE      2      3      3      6      5
D21V5, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 15(15Q21.1) MUTATED        3      2      3
  DEL PEAK 15(15Q21.1) WILD-TYPE      6      7      6
D21V6, multiclass
        clus
vv       DEL PEAK 15(15Q21.1) MUTATED DEL PEAK 15(15Q21.1) WILD-TYPE
  CLUS_1                            3                              6
  CLUS_2                            2                              7
  CLUS_3                            3                              6
D21V7, binary
                                cls
clus                              0  1
  DEL PEAK 15(15Q21.1) MUTATED    3  5
  DEL PEAK 15(15Q21.1) WILD-TYPE  7 12
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 15(15Q21.1) MUTATED      3    5
  DEL PEAK 15(15Q21.1) WILD-TYPE    7   12
        clus
vv       DEL PEAK 15(15Q21.1) MUTATED DEL PEAK 15(15Q21.1) WILD-TYPE
  CLUS_1                            3                              7
  CLUS_2                            5                             12

Clustering(22) Variable = DEL PEAK 16(16P13.13) MUTATION ANALYSIS
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(16P13.13) MUTATED        0      1      3
  DEL PEAK 16(16P13.13) WILD-TYPE      4     11      9
D22V1, multiclass
        clus
vv       DEL PEAK 16(16P13.13) MUTATED DEL PEAK 16(16P13.13) WILD-TYPE
  CLUS_1                             0                               4
  CLUS_2                             1                              11
  CLUS_3                             3                               9
D22V2, binary
                                 cls
clus                               0  1
  DEL PEAK 16(16P13.13) MUTATED    1  3
  DEL PEAK 16(16P13.13) WILD-TYPE 14 10
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 16(16P13.13) MUTATED      1    3
  DEL PEAK 16(16P13.13) WILD-TYPE   14   10
        clus
vv       DEL PEAK 16(16P13.13) MUTATED DEL PEAK 16(16P13.13) WILD-TYPE
  CLUS_1                             1                              14
  CLUS_2                             3                              10
D22V3, binary
                                 cls
clus                               0  1
  DEL PEAK 16(16P13.13) MUTATED    2  2
  DEL PEAK 16(16P13.13) WILD-TYPE  8 16
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 16(16P13.13) MUTATED      2    2
  DEL PEAK 16(16P13.13) WILD-TYPE    8   16
        clus
vv       DEL PEAK 16(16P13.13) MUTATED DEL PEAK 16(16P13.13) WILD-TYPE
  CLUS_1                             2                               8
  CLUS_2                             2                              16
D22V4, binary
                                 cls
clus                               0  1
  DEL PEAK 16(16P13.13) MUTATED    1  3
  DEL PEAK 16(16P13.13) WILD-TYPE 13 10
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 16(16P13.13) MUTATED      1    3
  DEL PEAK 16(16P13.13) WILD-TYPE   13   10
        clus
vv       DEL PEAK 16(16P13.13) MUTATED DEL PEAK 16(16P13.13) WILD-TYPE
  CLUS_1                             1                              13
  CLUS_2                             3                              10
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 16(16P13.13) MUTATED        0      0      3      1      0
  DEL PEAK 16(16P13.13) WILD-TYPE      3      3      3      7      7
D22V5, multiclass
                                 vv
clus                              CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 16(16P13.13) MUTATED        0      1      3
  DEL PEAK 16(16P13.13) WILD-TYPE      9      8      6
D22V6, multiclass
        clus
vv       DEL PEAK 16(16P13.13) MUTATED DEL PEAK 16(16P13.13) WILD-TYPE
  CLUS_1                             0                               9
  CLUS_2                             1                               8
  CLUS_3                             3                               6
D22V7, binary
                                 cls
clus                               0  1
  DEL PEAK 16(16P13.13) MUTATED    0  4
  DEL PEAK 16(16P13.13) WILD-TYPE 10 13
[1] "tbl2"
                                 cls
clus                              [,1] [,2]
  DEL PEAK 16(16P13.13) MUTATED      0    4
  DEL PEAK 16(16P13.13) WILD-TYPE   10   13
        clus
vv       DEL PEAK 16(16P13.13) MUTATED DEL PEAK 16(16P13.13) WILD-TYPE
  CLUS_1                             0                              10
  CLUS_2                             4                              13

Clustering(23) Variable = DEL PEAK 17(16Q23.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(16Q23.1) MUTATED        0      3      2
  DEL PEAK 17(16Q23.1) WILD-TYPE      4      9     10
D23V1, multiclass
        clus
vv       DEL PEAK 17(16Q23.1) MUTATED DEL PEAK 17(16Q23.1) WILD-TYPE
  CLUS_1                            0                              4
  CLUS_2                            3                              9
  CLUS_3                            2                             10
D23V2, binary
                                cls
clus                              0  1
  DEL PEAK 17(16Q23.1) MUTATED    2  3
  DEL PEAK 17(16Q23.1) WILD-TYPE 13 10
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(16Q23.1) MUTATED      2    3
  DEL PEAK 17(16Q23.1) WILD-TYPE   13   10
        clus
vv       DEL PEAK 17(16Q23.1) MUTATED DEL PEAK 17(16Q23.1) WILD-TYPE
  CLUS_1                            2                             13
  CLUS_2                            3                             10
D23V3, binary
                                cls
clus                              0  1
  DEL PEAK 17(16Q23.1) MUTATED    3  2
  DEL PEAK 17(16Q23.1) WILD-TYPE  7 16
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(16Q23.1) MUTATED      3    2
  DEL PEAK 17(16Q23.1) WILD-TYPE    7   16
        clus
vv       DEL PEAK 17(16Q23.1) MUTATED DEL PEAK 17(16Q23.1) WILD-TYPE
  CLUS_1                            3                              7
  CLUS_2                            2                             16
D23V4, binary
                                cls
clus                              0  1
  DEL PEAK 17(16Q23.1) MUTATED    2  3
  DEL PEAK 17(16Q23.1) WILD-TYPE 12 10
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(16Q23.1) MUTATED      2    3
  DEL PEAK 17(16Q23.1) WILD-TYPE   12   10
        clus
vv       DEL PEAK 17(16Q23.1) MUTATED DEL PEAK 17(16Q23.1) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            3                             10
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 17(16Q23.1) MUTATED        1      1      1      2      0
  DEL PEAK 17(16Q23.1) WILD-TYPE      2      2      5      6      7
D23V5, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 17(16Q23.1) MUTATED        1      2      2
  DEL PEAK 17(16Q23.1) WILD-TYPE      8      7      7
D23V6, multiclass
        clus
vv       DEL PEAK 17(16Q23.1) MUTATED DEL PEAK 17(16Q23.1) WILD-TYPE
  CLUS_1                            1                              8
  CLUS_2                            2                              7
  CLUS_3                            2                              7
D23V7, binary
                                cls
clus                              0  1
  DEL PEAK 17(16Q23.1) MUTATED    1  4
  DEL PEAK 17(16Q23.1) WILD-TYPE  9 13
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 17(16Q23.1) MUTATED      1    4
  DEL PEAK 17(16Q23.1) WILD-TYPE    9   13
        clus
vv       DEL PEAK 17(16Q23.1) MUTATED DEL PEAK 17(16Q23.1) WILD-TYPE
  CLUS_1                            1                              9
  CLUS_2                            4                             13

Clustering(24) Variable = DEL PEAK 18(17Q24.1) MUTATION ANALYSIS
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(17Q24.1) MUTATED        0      0      4
  DEL PEAK 18(17Q24.1) WILD-TYPE      4     12      8
D24V1, multiclass
        clus
vv       DEL PEAK 18(17Q24.1) MUTATED DEL PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                            0                              4
  CLUS_2                            0                             12
  CLUS_3                            4                              8
D24V2, binary
                                cls
clus                              0  1
  DEL PEAK 18(17Q24.1) MUTATED    2  2
  DEL PEAK 18(17Q24.1) WILD-TYPE 13 11
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(17Q24.1) MUTATED      2    2
  DEL PEAK 18(17Q24.1) WILD-TYPE   13   11
        clus
vv       DEL PEAK 18(17Q24.1) MUTATED DEL PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                            2                             13
  CLUS_2                            2                             11
D24V3, binary
                                cls
clus                              0  1
  DEL PEAK 18(17Q24.1) MUTATED    2  2
  DEL PEAK 18(17Q24.1) WILD-TYPE  8 16
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(17Q24.1) MUTATED      2    2
  DEL PEAK 18(17Q24.1) WILD-TYPE    8   16
        clus
vv       DEL PEAK 18(17Q24.1) MUTATED DEL PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                            2                              8
  CLUS_2                            2                             16
D24V4, binary
                                cls
clus                              0  1
  DEL PEAK 18(17Q24.1) MUTATED    2  2
  DEL PEAK 18(17Q24.1) WILD-TYPE 12 11
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(17Q24.1) MUTATED      2    2
  DEL PEAK 18(17Q24.1) WILD-TYPE   12   11
        clus
vv       DEL PEAK 18(17Q24.1) MUTATED DEL PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                            2                             12
  CLUS_2                            2                             11
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  DEL PEAK 18(17Q24.1) MUTATED        0      0      2      0      2
  DEL PEAK 18(17Q24.1) WILD-TYPE      3      3      4      8      5
D24V5, multiclass
                                vv
clus                             CLUS_1 CLUS_2 CLUS_3
  DEL PEAK 18(17Q24.1) MUTATED        2      0      2
  DEL PEAK 18(17Q24.1) WILD-TYPE      7      9      7
D24V6, multiclass
        clus
vv       DEL PEAK 18(17Q24.1) MUTATED DEL PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                            2                              7
  CLUS_2                            0                              9
  CLUS_3                            2                              7
D24V7, binary
                                cls
clus                              0  1
  DEL PEAK 18(17Q24.1) MUTATED    2  2
  DEL PEAK 18(17Q24.1) WILD-TYPE  8 15
[1] "tbl2"
                                cls
clus                             [,1] [,2]
  DEL PEAK 18(17Q24.1) MUTATED      2    2
  DEL PEAK 18(17Q24.1) WILD-TYPE    8   15
        clus
vv       DEL PEAK 18(17Q24.1) MUTATED DEL PEAK 18(17Q24.1) WILD-TYPE
  CLUS_1                            2                              8
  CLUS_2                            2                             15
> q(save="no")
