
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/GBM-TP/8218517/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/GBM-TP/8142876/GBM-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=GBM-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oT=GBM-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/GBM-TP/8142876/GBM-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/GBM-TP/8218517/transformed.cor.cli.txt"

nPatients in clinical file=582, in cluster file=283, common to both=278
[1]  12 278
[1] "EGFR MUTATION ANALYSIS"
[1] 3
  EGFR MUTATED EGFR WILD-TYPE 
            73            205 
  EGFR MUTATED EGFR WILD-TYPE 
            73            205 
[1] "PIK3R1 MUTATION ANALYSIS"
[1] 3
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
              32              246 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
              32              246 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
             6            272 
  BRAF MUTATED BRAF WILD-TYPE 
             6            272 
[1] "IDH1 MUTATION ANALYSIS"
[1] 3
  IDH1 MUTATED IDH1 WILD-TYPE 
            14            264 
  IDH1 MUTATED IDH1 WILD-TYPE 
            14            264 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            78            200 
  TP53 MUTATED TP53 WILD-TYPE 
            78            200 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            85            193 
  PTEN MUTATED PTEN WILD-TYPE 
            85            193 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              29              249 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              29              249 
[1] "RB1 MUTATION ANALYSIS"
[1] 3
  RB1 MUTATED RB1 WILD-TYPE 
           23           255 
  RB1 MUTATED RB1 WILD-TYPE 
           23           255 
[1] "NF1 MUTATION ANALYSIS"
[1] 3
  NF1 MUTATED NF1 WILD-TYPE 
           29           249 
  NF1 MUTATED NF1 WILD-TYPE 
           29           249 
[1] "STAG2 MUTATION ANALYSIS"
[1] 3
  STAG2 MUTATED STAG2 WILD-TYPE 
             12             266 
  STAG2 MUTATED STAG2 WILD-TYPE 
             12             266 
[1] "WNT2 MUTATION ANALYSIS"
[1] 3
  WNT2 MUTATED WNT2 WILD-TYPE 
             5            273 
  WNT2 MUTATED WNT2 WILD-TYPE 
             5            273 
[1] "TPTE2 MUTATION ANALYSIS"
[1] 3
  TPTE2 MUTATED TPTE2 WILD-TYPE 
              8             270 
  TPTE2 MUTATED TPTE2 WILD-TYPE 
              8             270 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "DCCUPLOADDATE"                         
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "RADIATIONTHERAPY"                      
[10] "KARNOFSKYPERFORMANCESCORE"             
[11] "HISTOLOGICALTYPE"                      
[12] "RADIATIONS.RADIATION.REGIMENINDICATION"
[13] "BATCHNUMBER"                           

Input Data has 13 rows and 278 columns.

[1] "Batch" "13"   
[1] "Last Follow UP"
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
         144           86          448           76          393          466 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
         470          493           NA            8          123            3 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
         691          989          320          570          702          327 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
          NA          280           NA           71           NA          359 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
         389          263           97          166           NA          161 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
          NA          579           95            7           67         1642 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
        1228         2246          866          454          557          214 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
         119            6          378          684           11          315 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
         359           NA          455          375           98          136 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
         294           62          717          286          679          595 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
         164           82           66           28         1322         1405 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
         204          218          699          178          165          637 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
         414           NA           33           23          150          282 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
          86          932          181          207          133           13 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
         958          342          108          254          138          268 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
         273          260          155           83          114          187 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
         139          120          237          164           45           15 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
         224          253          391          145           47          145 
TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
         151          478          426          439           50          316 
TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 
         734           80          323          427          351          333 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 
        1050          357          399           98           62          364 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
          29          701           68          342          419           41 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
         164           88          880           24           42         1788 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
        1246          543          232          218          532           12 
TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 
         104          300           NA          119          131          883 
TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 
         772          154          294          148          229            5 
TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
         124          501          213          137          202          343 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
         244          567          144          242           54          164 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
         161          165          422          953          286          452 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
         167          270           37           48          241           71 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
         146          505           NA          555         1008          648 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
         914          427          350          753          316          316 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 
         489          231           87          438          480           77 
TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
          37           95           20          145          222          160 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
         119          275          474          442          358          298 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 
         432          237          415          128          259          319 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 
         165          468            3          593           36          142 
TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
         386          515          372          632          457          485 
TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
         269          693          644          643          604          113 
TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 
         383          604          330          323           26          406 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
         272          290           30          135          360            6 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
         351          236          105          636          132          436 
TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
         228          146          138          535           94          111 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
         279         1458           77          328          508          100 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
          82          346          519          254          638          147 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
         153            7          282          235          237           49 
TCGA-81-5911 TCGA-87-5896 
         539          800 
Variable 1:'AGE':	nDistinctValues=59,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=183,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=230,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=18,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 10:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=7,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 11:'HISTOLOGICAL.TYPE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 13:'BATCH.NUMBER':	nDistinctValues=14,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "GENDER"                                
[3] "KARNOFSKY.PERFORMANCE.SCORE"           
[4] "HISTOLOGICAL.TYPE"                     
[5] "RADIATIONS.RADIATION.REGIMENINDICATION"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 278 columns, 1 survival variables, and 5 non-survival variables.
AGE, nv=59, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=7, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=3, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = EGFR MUTATION ANALYSIS
D1V1, survival
                sevent
clus2              0   1
  EGFR MUTATED    16  57
  EGFR WILD-TYPE  56 149
  EGFR MUTATED EGFR WILD-TYPE 
            73            205 
  EGFR MUTATED EGFR WILD-TYPE 
            57            149 
$`EGFR MUTATED`
TCGA-02-0003 TCGA-02-2485 TCGA-06-0137 TCGA-06-0142 TCGA-06-0154 TCGA-06-0155 
        4.73        15.45        23.08         2.20        12.79         8.65 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0174 TCGA-06-0185 TCGA-06-0237 TCGA-06-0649 
        3.19         5.46         2.20        73.84        10.36         2.04 
TCGA-06-0650 TCGA-06-0743 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0876 
       23.57        22.32         2.70         2.17         0.92        46.19 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-1804 TCGA-06-2557 TCGA-06-2561 
        7.17        22.98         5.85        13.61         1.08         9.27 
TCGA-06-2563 TCGA-06-2565 TCGA-06-2567 TCGA-06-5413 TCGA-06-5856 TCGA-06-6695 
       30.64         6.81         4.37         8.81         3.75         8.32 
TCGA-06-6700 TCGA-12-0616 TCGA-12-0619 TCGA-12-3650 TCGA-12-3652 TCGA-14-0786 
        4.77        14.43        10.39        10.95        34.52        23.05 
TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-1395 TCGA-14-1456 TCGA-14-1823 
       11.24        13.78         1.35         1.38        40.96        17.85 
TCGA-14-1829 TCGA-14-2554 TCGA-15-0742 TCGA-16-1045 TCGA-19-1790 TCGA-19-2620 
        7.17        17.49         9.86        29.03         5.06         4.87 
TCGA-19-2624 TCGA-19-2625 TCGA-26-1439 TCGA-26-5139 TCGA-27-1831 TCGA-27-1838 
        0.16         4.08        13.87         1.58        16.60        11.51 
TCGA-27-2528 TCGA-28-1747 TCGA-28-5207 TCGA-28-5209 TCGA-28-5213 TCGA-32-1970 
       15.78         2.53         9.04        14.53         9.80        15.39 
TCGA-32-1979 TCGA-32-1982 TCGA-32-1991 TCGA-32-2632 TCGA-76-4926 TCGA-76-4927 
       19.50         4.67        16.93         8.84         4.54        17.59 
TCGA-76-4931 TCGA-76-6191 TCGA-76-6282 TCGA-76-6656 TCGA-76-6661 TCGA-81-5910 
        9.17        16.70        17.06         4.83         0.23         1.61 
TCGA-81-5911 
       17.72 

$`EGFR WILD-TYPE`
TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2486 
        2.83        14.73         2.50        12.92        15.32        16.21 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 TCGA-06-0129 
        2.70         0.26         4.04         0.10        22.72        32.52 
TCGA-06-0130 TCGA-06-0132 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0145 
       10.52        18.74        10.75         0.20         9.21         2.33 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 
       46.59        11.80        10.65         5.29        11.41        19.04 
TCGA-06-0169 TCGA-06-0173 TCGA-06-0178 TCGA-06-0184 TCGA-06-0188 TCGA-06-0189 
        3.12         0.23        53.98        40.37        28.47        14.93 
TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 
       18.31         7.04         3.91         0.20        12.43        22.49 
TCGA-06-0219 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 
        0.36        11.80        20.42        14.96        12.33         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0686 TCGA-06-0744 TCGA-06-0745 TCGA-06-0875 
        4.47         9.67         9.40        19.56         5.39        43.46 
TCGA-06-0877 TCGA-06-0882 TCGA-06-0939 TCGA-06-1806 TCGA-06-2558 TCGA-06-2559 
        5.65         5.42        20.94        15.32         0.76         4.93 
TCGA-06-2562 TCGA-06-2564 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
        2.83         5.95         0.43        31.50        11.24         3.55 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 
        8.35         4.54         8.98         8.55         5.10         2.73 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        6.15         4.57         3.95         7.79         5.39         1.48 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6701 
        0.49         7.36        12.85         4.77         1.55         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0618 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 
       15.72        14.01         1.64        24.13         2.63        10.62 
TCGA-12-1597 TCGA-12-3649 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       14.04        11.54        11.74        13.12         3.22         2.04 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0787 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 
       11.97         0.95         2.24         5.39         2.89        28.93 
TCGA-14-1043 TCGA-14-1450 TCGA-14-1825 TCGA-14-3476 TCGA-14-4157 TCGA-15-1444 
        0.79        58.78         7.63         0.39         3.42        50.53 
TCGA-16-0846 TCGA-16-0861 TCGA-19-1390 TCGA-19-2619 TCGA-19-2623 TCGA-19-2629 
        3.91         4.31        25.38         9.67         7.53        16.47 
TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        7.00         4.50         6.64        11.28         8.02        18.64 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
        4.73         7.96         1.78         5.39         5.29         5.42 
TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
       31.33         9.40        14.86         5.49         8.88         1.22 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        7.92         2.33         4.80         9.86        18.25        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       21.30        30.05        14.04        24.76        10.39        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-28-1753 TCGA-28-2499 
       16.08         7.59         2.86        14.40         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 
        0.66         4.77         7.30         5.26         3.91        15.58 
TCGA-28-5211 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
       11.77        14.20         7.79        13.64         4.21         8.52 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1977 TCGA-32-1980 TCGA-32-1986 TCGA-32-2491 
       10.49         5.42         0.10         1.18        12.69        12.23 
TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       20.78        15.02        15.95        22.78        21.17        21.14 
TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       19.86         3.72        12.59        19.86        10.85        10.62 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
       11.84         0.20        11.54         7.76         3.45        20.91 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4928 TCGA-76-4929 
        4.34        14.33         7.50         4.80         3.09         3.65 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
       47.93         2.53        10.78         3.29         2.70        11.38 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6657 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        8.35        20.98         5.03         9.27         7.73         7.79 
TCGA-87-5896 
       26.30 

  EGFR MUTATED EGFR WILD-TYPE 
          0.16           0.10 
  EGFR MUTATED EGFR WILD-TYPE 
         73.84          58.78 
  EGFR MUTATED EGFR WILD-TYPE 
          9.27           8.35 
[1] "0.2 - 73.8 (9.3)" "0.1 - 58.8 (8.3)"
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
  "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-0238     TCGA-06-0240     TCGA-06-0241     TCGA-06-0644 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0645     TCGA-06-0646     TCGA-06-0648     TCGA-06-0649 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-0650     TCGA-06-0686     TCGA-06-0743     TCGA-06-0744 
  "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-06-0745     TCGA-06-0747     TCGA-06-0749     TCGA-06-0750 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-06-0875     TCGA-06-0876     TCGA-06-0877     TCGA-06-0878 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-0879     TCGA-06-0881     TCGA-06-0882     TCGA-06-0939 
  "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-1804     TCGA-06-1806     TCGA-06-2557     TCGA-06-2558 
  "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2561     TCGA-06-2562     TCGA-06-2563 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-2564     TCGA-06-2565     TCGA-06-2567     TCGA-06-2569 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-06-2570     TCGA-06-5408     TCGA-06-5410     TCGA-06-5411 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-5412     TCGA-06-5413     TCGA-06-5414     TCGA-06-5415 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-5417     TCGA-06-5418     TCGA-06-5856     TCGA-06-5858 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-06-5859     TCGA-06-6388     TCGA-06-6389     TCGA-06-6390 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-6391     TCGA-06-6693     TCGA-06-6694     TCGA-06-6695 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-6697     TCGA-06-6698     TCGA-06-6699     TCGA-06-6700 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-6701     TCGA-08-0386     TCGA-12-0615     TCGA-12-0616 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-12-0618     TCGA-12-0619     TCGA-12-0688     TCGA-12-0692 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-12-0821     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5299 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-12-5301     TCGA-14-0740     TCGA-14-0781     TCGA-14-0786 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-14-0787     TCGA-14-0789     TCGA-14-0790     TCGA-14-0813 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-14-0817     TCGA-14-0862     TCGA-14-0871     TCGA-14-1043 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-14-1395     TCGA-14-1450     TCGA-14-1456     TCGA-14-1823 
  "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-14-1825     TCGA-14-1829     TCGA-14-2554     TCGA-14-3476 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-14-4157     TCGA-15-0742     TCGA-15-1444     TCGA-16-0846 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-16-0861     TCGA-16-1045     TCGA-19-1390     TCGA-19-1790 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-19-2619     TCGA-19-2620     TCGA-19-2623     TCGA-19-2624 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-19-2625     TCGA-19-2629     TCGA-19-2631     TCGA-19-4068 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5958 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1439     TCGA-26-1442 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-26-6173     TCGA-26-6174 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-27-1830     TCGA-27-1831     TCGA-27-1832     TCGA-27-1833 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-27-1834     TCGA-27-1835     TCGA-27-1836     TCGA-27-1837 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-27-1838     TCGA-27-2518     TCGA-27-2519     TCGA-27-2521 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-27-2523     TCGA-27-2524     TCGA-27-2526     TCGA-27-2527 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-27-2528     TCGA-28-1747     TCGA-28-1753     TCGA-28-2499 
  "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-28-2502     TCGA-28-2509     TCGA-28-2513     TCGA-28-2514 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-28-5204     TCGA-28-5207     TCGA-28-5208     TCGA-28-5209 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-28-5211     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5218     TCGA-28-5219     TCGA-28-5220 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-28-6450     TCGA-32-1970     TCGA-32-1977     TCGA-32-1979 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-32-1980     TCGA-32-1982     TCGA-32-1986     TCGA-32-1991 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-32-2491     TCGA-32-2494     TCGA-32-2495     TCGA-32-2615 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-32-2632     TCGA-32-2634     TCGA-32-2638     TCGA-32-4208 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-32-4209     TCGA-32-4210     TCGA-32-4211     TCGA-32-4213 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-32-4719     TCGA-32-5222     TCGA-41-2571     TCGA-41-2572 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-41-2573     TCGA-41-2575     TCGA-41-3392     TCGA-41-3393 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-41-3915     TCGA-41-4097     TCGA-41-5651     TCGA-41-6646 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-74-6573     TCGA-74-6575     TCGA-74-6577     TCGA-74-6578 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-74-6584     TCGA-76-4925     TCGA-76-4926     TCGA-76-4927 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-76-4928     TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-76-4934     TCGA-76-4935     TCGA-76-6191     TCGA-76-6192 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-76-6193     TCGA-76-6280     TCGA-76-6282     TCGA-76-6285 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-76-6286     TCGA-76-6656     TCGA-76-6657     TCGA-76-6661 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-76-6662     TCGA-76-6663     TCGA-76-6664     TCGA-81-5910 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-81-5911     TCGA-87-5896 
  "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
  "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-0238     TCGA-06-0240     TCGA-06-0241     TCGA-06-0644 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0645     TCGA-06-0646     TCGA-06-0648     TCGA-06-0649 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-0650     TCGA-06-0686     TCGA-06-0743     TCGA-06-0744 
  "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-06-0745     TCGA-06-0747     TCGA-06-0749     TCGA-06-0750 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-06-0875     TCGA-06-0876     TCGA-06-0877     TCGA-06-0878 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-0879     TCGA-06-0881     TCGA-06-0882     TCGA-06-0939 
  "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-1804     TCGA-06-1806     TCGA-06-2557     TCGA-06-2558 
  "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2561     TCGA-06-2562     TCGA-06-2563 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-2564     TCGA-06-2565     TCGA-06-2567     TCGA-06-2569 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-06-2570     TCGA-06-5408     TCGA-06-5410     TCGA-06-5411 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-5412     TCGA-06-5413     TCGA-06-5414     TCGA-06-5415 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-5417     TCGA-06-5418     TCGA-06-5856     TCGA-06-5858 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-06-5859     TCGA-06-6388     TCGA-06-6389     TCGA-06-6390 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-6391     TCGA-06-6693     TCGA-06-6694     TCGA-06-6695 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-6697     TCGA-06-6698     TCGA-06-6699     TCGA-06-6700 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-6701     TCGA-08-0386     TCGA-12-0615     TCGA-12-0616 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-12-0618     TCGA-12-0619     TCGA-12-0688     TCGA-12-0692 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-12-0821     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5299 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-12-5301     TCGA-14-0740     TCGA-14-0781     TCGA-14-0786 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-14-0787     TCGA-14-0789     TCGA-14-0790     TCGA-14-0813 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-14-0817     TCGA-14-0862     TCGA-14-0871     TCGA-14-1043 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-14-1395     TCGA-14-1450     TCGA-14-1456     TCGA-14-1823 
  "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-14-1825     TCGA-14-1829     TCGA-14-2554     TCGA-14-3476 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-14-4157     TCGA-15-0742     TCGA-15-1444     TCGA-16-0846 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-16-0861     TCGA-16-1045     TCGA-19-1390     TCGA-19-1790 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-19-2619     TCGA-19-2620     TCGA-19-2623     TCGA-19-2624 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-19-2625     TCGA-19-2629     TCGA-19-2631     TCGA-19-4068 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5958 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1439     TCGA-26-1442 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-26-6173     TCGA-26-6174 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-27-1830     TCGA-27-1831     TCGA-27-1832     TCGA-27-1833 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-27-1834     TCGA-27-1835     TCGA-27-1836     TCGA-27-1837 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-27-1838     TCGA-27-2518     TCGA-27-2519     TCGA-27-2521 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-27-2523     TCGA-27-2524     TCGA-27-2526     TCGA-27-2527 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-27-2528     TCGA-28-1747     TCGA-28-1753     TCGA-28-2499 
  "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-28-2502     TCGA-28-2509     TCGA-28-2513     TCGA-28-2514 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-28-5204     TCGA-28-5207     TCGA-28-5208     TCGA-28-5209 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-28-5211     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5218     TCGA-28-5219     TCGA-28-5220 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-28-6450     TCGA-32-1970     TCGA-32-1977     TCGA-32-1979 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-32-1980     TCGA-32-1982     TCGA-32-1986     TCGA-32-1991 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-32-2491     TCGA-32-2494     TCGA-32-2495     TCGA-32-2615 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-32-2632     TCGA-32-2634     TCGA-32-2638     TCGA-32-4208 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-32-4209     TCGA-32-4210     TCGA-32-4211     TCGA-32-4213 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-32-4719     TCGA-32-5222     TCGA-41-2571     TCGA-41-2572 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-41-2573     TCGA-41-2575     TCGA-41-3392     TCGA-41-3393 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-41-3915     TCGA-41-4097     TCGA-41-5651     TCGA-41-6646 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-74-6573     TCGA-74-6575     TCGA-74-6577     TCGA-74-6578 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-74-6584     TCGA-76-4925     TCGA-76-4926     TCGA-76-4927 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-76-4928     TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-76-4934     TCGA-76-4935     TCGA-76-6191     TCGA-76-6192 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-76-6193     TCGA-76-6280     TCGA-76-6282     TCGA-76-6285 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-76-6286     TCGA-76-6656     TCGA-76-6657     TCGA-76-6661 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-76-6662     TCGA-76-6663     TCGA-76-6664     TCGA-81-5910 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-81-5911     TCGA-87-5896 
  "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
  "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-0238     TCGA-06-0240     TCGA-06-0241     TCGA-06-0644 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-0645     TCGA-06-0646     TCGA-06-0648     TCGA-06-0649 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-0650     TCGA-06-0686     TCGA-06-0743     TCGA-06-0744 
  "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-06-0745     TCGA-06-0747     TCGA-06-0749     TCGA-06-0750 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-06-0875     TCGA-06-0876     TCGA-06-0877     TCGA-06-0878 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-0879     TCGA-06-0881     TCGA-06-0882     TCGA-06-0939 
  "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-1804     TCGA-06-1806     TCGA-06-2557     TCGA-06-2558 
  "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2561     TCGA-06-2562     TCGA-06-2563 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-2564     TCGA-06-2565     TCGA-06-2567     TCGA-06-2569 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-06-2570     TCGA-06-5408     TCGA-06-5410     TCGA-06-5411 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-5412     TCGA-06-5413     TCGA-06-5414     TCGA-06-5415 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-5417     TCGA-06-5418     TCGA-06-5856     TCGA-06-5858 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-06-5859     TCGA-06-6388     TCGA-06-6389     TCGA-06-6390 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-06-6391     TCGA-06-6693     TCGA-06-6694     TCGA-06-6695 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-6697     TCGA-06-6698     TCGA-06-6699     TCGA-06-6700 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-06-6701     TCGA-08-0386     TCGA-12-0615     TCGA-12-0616 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-12-0618     TCGA-12-0619     TCGA-12-0688     TCGA-12-0692 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-12-0821     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5299 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-12-5301     TCGA-14-0740     TCGA-14-0781     TCGA-14-0786 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-14-0787     TCGA-14-0789     TCGA-14-0790     TCGA-14-0813 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-14-0817     TCGA-14-0862     TCGA-14-0871     TCGA-14-1043 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-14-1395     TCGA-14-1450     TCGA-14-1456     TCGA-14-1823 
  "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-14-1825     TCGA-14-1829     TCGA-14-2554     TCGA-14-3476 
"EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-14-4157     TCGA-15-0742     TCGA-15-1444     TCGA-16-0846 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-16-0861     TCGA-16-1045     TCGA-19-1390     TCGA-19-1790 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-19-2619     TCGA-19-2620     TCGA-19-2623     TCGA-19-2624 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-19-2625     TCGA-19-2629     TCGA-19-2631     TCGA-19-4068 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5958 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1439     TCGA-26-1442 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-26-6173     TCGA-26-6174 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-27-1830     TCGA-27-1831     TCGA-27-1832     TCGA-27-1833 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-27-1834     TCGA-27-1835     TCGA-27-1836     TCGA-27-1837 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-27-1838     TCGA-27-2518     TCGA-27-2519     TCGA-27-2521 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-27-2523     TCGA-27-2524     TCGA-27-2526     TCGA-27-2527 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-27-2528     TCGA-28-1747     TCGA-28-1753     TCGA-28-2499 
  "EGFR MUTATED"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-28-2502     TCGA-28-2509     TCGA-28-2513     TCGA-28-2514 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-28-5204     TCGA-28-5207     TCGA-28-5208     TCGA-28-5209 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-28-5211     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5218     TCGA-28-5219     TCGA-28-5220 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-28-6450     TCGA-32-1970     TCGA-32-1977     TCGA-32-1979 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-32-1980     TCGA-32-1982     TCGA-32-1986     TCGA-32-1991 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-32-2491     TCGA-32-2494     TCGA-32-2495     TCGA-32-2615 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-32-2632     TCGA-32-2634     TCGA-32-2638     TCGA-32-4208 
  "EGFR MUTATED" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-32-4209     TCGA-32-4210     TCGA-32-4211     TCGA-32-4213 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-32-4719     TCGA-32-5222     TCGA-41-2571     TCGA-41-2572 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-41-2573     TCGA-41-2575     TCGA-41-3392     TCGA-41-3393 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-41-3915     TCGA-41-4097     TCGA-41-5651     TCGA-41-6646 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-74-6573     TCGA-74-6575     TCGA-74-6577     TCGA-74-6578 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE" 
    TCGA-74-6584     TCGA-76-4925     TCGA-76-4926     TCGA-76-4927 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED"   "EGFR MUTATED" 
    TCGA-76-4928     TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-76-4934     TCGA-76-4935     TCGA-76-6191     TCGA-76-6192 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-76-6193     TCGA-76-6280     TCGA-76-6282     TCGA-76-6285 
"EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE" 
    TCGA-76-6286     TCGA-76-6656     TCGA-76-6657     TCGA-76-6661 
"EGFR WILD-TYPE"   "EGFR MUTATED" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-76-6662     TCGA-76-6663     TCGA-76-6664     TCGA-81-5910 
"EGFR WILD-TYPE" "EGFR WILD-TYPE" "EGFR WILD-TYPE"   "EGFR MUTATED" 
    TCGA-81-5911     TCGA-87-5896 
  "EGFR MUTATED" "EGFR WILD-TYPE" 
[1] "hr=" "1"  
D1V2, continuous
D1V3, binary
                cls
clus               0   1
  EGFR MUTATED    22  51
  EGFR WILD-TYPE  78 127
[1] "tbl2"
                cls
clus             [,1] [,2]
  EGFR MUTATED     22   51
  EGFR WILD-TYPE   78  127
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  FEMALE           22             78
  MALE             51            127
D1V4, continuous
                vv
clus             GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  EGFR MUTATED                               1                   0
  EGFR WILD-TYPE                             8                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  EGFR MUTATED                                72
  EGFR WILD-TYPE                             193
D1V5, multiclass
                                 clus
vv                                EGFR MUTATED EGFR WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              1              8
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM           72            193
D1V6, binary
                cls
clus               0   1
  EGFR MUTATED    51  22
  EGFR WILD-TYPE 135  70
[1] "tbl2"
                cls
clus             [,1] [,2]
  EGFR MUTATED     51   22
  EGFR WILD-TYPE  135   70
     clus
vv    EGFR MUTATED EGFR WILD-TYPE
  NO            51            135
  YES           22             70

Clustering(2) Variable = PIK3R1 MUTATION ANALYSIS
D2V1, survival
                  sevent
clus2                0   1
  PIK3R1 MUTATED     8  24
  PIK3R1 WILD-TYPE  64 182
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
              32              246 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
              24              182 
$`PIK3R1 MUTATED`
TCGA-02-0003 TCGA-06-0128 TCGA-06-0129 TCGA-06-0750 TCGA-06-0877 TCGA-06-2562 
        4.73        22.72        32.52         0.92         5.65         2.83 
TCGA-06-6388 TCGA-06-6695 TCGA-12-0688 TCGA-14-0790 TCGA-14-0862 TCGA-14-1456 
        3.95         8.32        24.13        13.78         2.89        40.96 
TCGA-15-1444 TCGA-19-2629 TCGA-19-5947 TCGA-19-5951 TCGA-19-5955 TCGA-19-5958 
       50.53        16.47         6.64         8.02         1.78         5.39 
TCGA-26-5139 TCGA-26-6174 TCGA-28-2513 TCGA-32-1991 TCGA-32-2634 TCGA-41-3915 
        1.58         2.33         7.30        16.93        22.78        11.84 
TCGA-74-6573 TCGA-74-6575 TCGA-76-4927 TCGA-76-4929 TCGA-76-6280 TCGA-76-6656 
        3.45        20.91        17.59         3.65        11.38         4.83 
TCGA-76-6657 TCGA-76-6662 
        5.03         9.27 

$`PIK3R1 WILD-TYPE`
TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
        2.83        14.73         2.50        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0130 
       16.21         2.70         0.26         4.04         0.10        10.52 
TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       18.74        23.08        10.75         0.20         9.21         2.20 
TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        2.33        46.59        11.80        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 
        5.46        10.65         5.29        11.41        19.04         3.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 
        0.23         2.20        53.98        40.37        73.84        28.47 
TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 
       14.93        18.31         7.04         3.91         0.20        12.43 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       22.49         0.36        10.36        11.80        20.42        14.96 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.33         3.22         4.47         9.67         2.04        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
        9.40        22.32        19.56         5.39         2.70         2.17 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 
       43.46        46.19         7.17        22.98         5.85         5.42 
TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
       20.94        13.61        15.32         1.08         0.76         4.93 
TCGA-06-2561 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
        9.27        30.64         5.95         6.81         4.37         0.43 
TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 
       31.50        11.24         3.55         8.35         4.54         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
        8.98         8.55         5.10         2.73         3.75         6.15 
TCGA-06-5859 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        4.57         7.79         5.39         1.48         0.49         7.36 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 
       12.85         4.77         1.55         4.77         4.96        15.72 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0692 TCGA-12-0821 
       14.01        14.43         1.64        10.39         2.63        10.62 
TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       14.04        11.54        10.95        34.52        11.74        13.12 
TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 
        3.22         2.04        11.97         0.95        23.05         2.24 
TCGA-14-0789 TCGA-14-0813 TCGA-14-0817 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 
       11.24         1.35         5.39        28.93         0.79         1.38 
TCGA-14-1450 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       58.78        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-0742 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
        3.42         9.86         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2631 TCGA-19-4068 TCGA-19-5950 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        7.00         4.50        11.28        18.64         4.73         7.96 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 
        5.29         5.42        13.87        31.33         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-6173 TCGA-27-1830 TCGA-27-1831 
        5.49         8.88         1.22         7.92         4.80        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        18.25        33.14        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        10.39        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        2.86        14.40        15.78         2.53         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        0.66         4.77         5.26         3.91         9.04        15.58 
TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 
       14.53        11.77         9.80        14.20         7.79        13.64 
TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 
        4.21         8.52        10.49         5.42        15.39         0.10 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-2491 TCGA-32-2494 
       19.50         1.18         4.67        12.69        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 
       15.02        15.95         8.84        21.17        21.14        19.86 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.72        12.59        19.86        10.85        10.62         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-4097 
       13.35         8.94         9.53         0.99         4.44         0.20 
TCGA-41-5651 TCGA-41-6646 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
       11.54         7.76         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4928 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 
        4.54         3.09         9.17        47.93         2.53        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
       16.70         3.29         2.70        17.06         8.35        20.98 
TCGA-76-6661 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        0.23         7.73         7.79         1.61        17.72        26.30 

  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
            0.92             0.10 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
           50.53            73.84 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
            7.66             8.91 
[1] "0.9 - 50.5 (7.7)" "0.1 - 73.8 (8.9)"
      TCGA-02-0003       TCGA-02-0033       TCGA-02-0047       TCGA-02-0055 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-02-2470       TCGA-02-2483       TCGA-02-2485       TCGA-02-2486 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0119       TCGA-06-0122       TCGA-06-0124       TCGA-06-0126 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0128       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
  "PIK3R1 MUTATED"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0137       TCGA-06-0139       TCGA-06-0140       TCGA-06-0141 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0142       TCGA-06-0145       TCGA-06-0151       TCGA-06-0152 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0154       TCGA-06-0155       TCGA-06-0157       TCGA-06-0158 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0165       TCGA-06-0166       TCGA-06-0167       TCGA-06-0168 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0169       TCGA-06-0173       TCGA-06-0174       TCGA-06-0178 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0184       TCGA-06-0185       TCGA-06-0188       TCGA-06-0189 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0192       TCGA-06-0195       TCGA-06-0209       TCGA-06-0213 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0214       TCGA-06-0216       TCGA-06-0219       TCGA-06-0237 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0238       TCGA-06-0240       TCGA-06-0241       TCGA-06-0644 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0645       TCGA-06-0646       TCGA-06-0648       TCGA-06-0649 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0650       TCGA-06-0686       TCGA-06-0743       TCGA-06-0744 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0745       TCGA-06-0747       TCGA-06-0749       TCGA-06-0750 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-06-0875       TCGA-06-0876       TCGA-06-0877       TCGA-06-0878 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-06-0879       TCGA-06-0881       TCGA-06-0882       TCGA-06-0939 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-1804       TCGA-06-1806       TCGA-06-2557       TCGA-06-2558 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-2559       TCGA-06-2561       TCGA-06-2562       TCGA-06-2563 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-06-2564       TCGA-06-2565       TCGA-06-2567       TCGA-06-2569 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-2570       TCGA-06-5408       TCGA-06-5410       TCGA-06-5411 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-5412       TCGA-06-5413       TCGA-06-5414       TCGA-06-5415 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-5417       TCGA-06-5418       TCGA-06-5856       TCGA-06-5858 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-5859       TCGA-06-6388       TCGA-06-6389       TCGA-06-6390 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-6391       TCGA-06-6693       TCGA-06-6694       TCGA-06-6695 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-06-6697       TCGA-06-6698       TCGA-06-6699       TCGA-06-6700 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-6701       TCGA-08-0386       TCGA-12-0615       TCGA-12-0616 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-12-0618       TCGA-12-0619       TCGA-12-0688       TCGA-12-0692 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-12-0821       TCGA-12-1597       TCGA-12-3649       TCGA-12-3650 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-12-3652       TCGA-12-3653       TCGA-12-5295       TCGA-12-5299 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-12-5301       TCGA-14-0740       TCGA-14-0781       TCGA-14-0786 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-14-0787       TCGA-14-0789       TCGA-14-0790       TCGA-14-0813 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-14-0817       TCGA-14-0862       TCGA-14-0871       TCGA-14-1043 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-14-1395       TCGA-14-1450       TCGA-14-1456       TCGA-14-1823 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-14-1825       TCGA-14-1829       TCGA-14-2554       TCGA-14-3476 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-14-4157       TCGA-15-0742       TCGA-15-1444       TCGA-16-0846 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-16-0861       TCGA-16-1045       TCGA-19-1390       TCGA-19-1790 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-19-2619       TCGA-19-2620       TCGA-19-2623       TCGA-19-2624 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-19-2625       TCGA-19-2629       TCGA-19-2631       TCGA-19-4068 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-19-5947       TCGA-19-5950       TCGA-19-5951       TCGA-19-5952 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-19-5953       TCGA-19-5954       TCGA-19-5955       TCGA-19-5958 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED"   "PIK3R1 MUTATED" 
      TCGA-19-5959       TCGA-19-5960       TCGA-26-1439       TCGA-26-1442 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-26-5132       TCGA-26-5133       TCGA-26-5134       TCGA-26-5135 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-26-5136       TCGA-26-5139       TCGA-26-6173       TCGA-26-6174 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-27-1830       TCGA-27-1831       TCGA-27-1832       TCGA-27-1833 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-27-1834       TCGA-27-1835       TCGA-27-1836       TCGA-27-1837 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-27-1838       TCGA-27-2518       TCGA-27-2519       TCGA-27-2521 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-27-2523       TCGA-27-2524       TCGA-27-2526       TCGA-27-2527 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-27-2528       TCGA-28-1747       TCGA-28-1753       TCGA-28-2499 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-28-2502       TCGA-28-2509       TCGA-28-2513       TCGA-28-2514 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-28-5204       TCGA-28-5207       TCGA-28-5208       TCGA-28-5209 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-28-5211       TCGA-28-5213       TCGA-28-5214       TCGA-28-5215 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-28-5216       TCGA-28-5218       TCGA-28-5219       TCGA-28-5220 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-28-6450       TCGA-32-1970       TCGA-32-1977       TCGA-32-1979 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-32-1980       TCGA-32-1982       TCGA-32-1986       TCGA-32-1991 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-32-2491       TCGA-32-2494       TCGA-32-2495       TCGA-32-2615 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-32-2632       TCGA-32-2634       TCGA-32-2638       TCGA-32-4208 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-32-4209       TCGA-32-4210       TCGA-32-4211       TCGA-32-4213 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-32-4719       TCGA-32-5222       TCGA-41-2571       TCGA-41-2572 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-41-2573       TCGA-41-2575       TCGA-41-3392       TCGA-41-3393 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-41-3915       TCGA-41-4097       TCGA-41-5651       TCGA-41-6646 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-74-6573       TCGA-74-6575       TCGA-74-6577       TCGA-74-6578 
  "PIK3R1 MUTATED"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-74-6584       TCGA-76-4925       TCGA-76-4926       TCGA-76-4927 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-76-4928       TCGA-76-4929       TCGA-76-4931       TCGA-76-4932 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-76-4934       TCGA-76-4935       TCGA-76-6191       TCGA-76-6192 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-76-6193       TCGA-76-6280       TCGA-76-6282       TCGA-76-6285 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-76-6286       TCGA-76-6656       TCGA-76-6657       TCGA-76-6661 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-76-6662       TCGA-76-6663       TCGA-76-6664       TCGA-81-5910 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-81-5911       TCGA-87-5896 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-02-0003       TCGA-02-0033       TCGA-02-0047       TCGA-02-0055 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-02-2470       TCGA-02-2483       TCGA-02-2485       TCGA-02-2486 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0119       TCGA-06-0122       TCGA-06-0124       TCGA-06-0126 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0128       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
  "PIK3R1 MUTATED"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0137       TCGA-06-0139       TCGA-06-0140       TCGA-06-0141 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0142       TCGA-06-0145       TCGA-06-0151       TCGA-06-0152 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0154       TCGA-06-0155       TCGA-06-0157       TCGA-06-0158 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0165       TCGA-06-0166       TCGA-06-0167       TCGA-06-0168 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0169       TCGA-06-0173       TCGA-06-0174       TCGA-06-0178 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0184       TCGA-06-0185       TCGA-06-0188       TCGA-06-0189 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0192       TCGA-06-0195       TCGA-06-0209       TCGA-06-0213 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0214       TCGA-06-0216       TCGA-06-0219       TCGA-06-0237 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0238       TCGA-06-0240       TCGA-06-0241       TCGA-06-0644 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0645       TCGA-06-0646       TCGA-06-0648       TCGA-06-0649 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0650       TCGA-06-0686       TCGA-06-0743       TCGA-06-0744 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0745       TCGA-06-0747       TCGA-06-0749       TCGA-06-0750 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-06-0875       TCGA-06-0876       TCGA-06-0877       TCGA-06-0878 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-06-0879       TCGA-06-0881       TCGA-06-0882       TCGA-06-0939 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-1804       TCGA-06-1806       TCGA-06-2557       TCGA-06-2558 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-2559       TCGA-06-2561       TCGA-06-2562       TCGA-06-2563 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-06-2564       TCGA-06-2565       TCGA-06-2567       TCGA-06-2569 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-2570       TCGA-06-5408       TCGA-06-5410       TCGA-06-5411 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-5412       TCGA-06-5413       TCGA-06-5414       TCGA-06-5415 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-5417       TCGA-06-5418       TCGA-06-5856       TCGA-06-5858 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-5859       TCGA-06-6388       TCGA-06-6389       TCGA-06-6390 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-6391       TCGA-06-6693       TCGA-06-6694       TCGA-06-6695 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-06-6697       TCGA-06-6698       TCGA-06-6699       TCGA-06-6700 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-6701       TCGA-08-0386       TCGA-12-0615       TCGA-12-0616 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-12-0618       TCGA-12-0619       TCGA-12-0688       TCGA-12-0692 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-12-0821       TCGA-12-1597       TCGA-12-3649       TCGA-12-3650 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-12-3652       TCGA-12-3653       TCGA-12-5295       TCGA-12-5299 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-12-5301       TCGA-14-0740       TCGA-14-0781       TCGA-14-0786 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-14-0787       TCGA-14-0789       TCGA-14-0790       TCGA-14-0813 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-14-0817       TCGA-14-0862       TCGA-14-0871       TCGA-14-1043 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-14-1395       TCGA-14-1450       TCGA-14-1456       TCGA-14-1823 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-14-1825       TCGA-14-1829       TCGA-14-2554       TCGA-14-3476 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-14-4157       TCGA-15-0742       TCGA-15-1444       TCGA-16-0846 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-16-0861       TCGA-16-1045       TCGA-19-1390       TCGA-19-1790 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-19-2619       TCGA-19-2620       TCGA-19-2623       TCGA-19-2624 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-19-2625       TCGA-19-2629       TCGA-19-2631       TCGA-19-4068 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-19-5947       TCGA-19-5950       TCGA-19-5951       TCGA-19-5952 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-19-5953       TCGA-19-5954       TCGA-19-5955       TCGA-19-5958 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED"   "PIK3R1 MUTATED" 
      TCGA-19-5959       TCGA-19-5960       TCGA-26-1439       TCGA-26-1442 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-26-5132       TCGA-26-5133       TCGA-26-5134       TCGA-26-5135 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-26-5136       TCGA-26-5139       TCGA-26-6173       TCGA-26-6174 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-27-1830       TCGA-27-1831       TCGA-27-1832       TCGA-27-1833 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-27-1834       TCGA-27-1835       TCGA-27-1836       TCGA-27-1837 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-27-1838       TCGA-27-2518       TCGA-27-2519       TCGA-27-2521 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-27-2523       TCGA-27-2524       TCGA-27-2526       TCGA-27-2527 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-27-2528       TCGA-28-1747       TCGA-28-1753       TCGA-28-2499 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-28-2502       TCGA-28-2509       TCGA-28-2513       TCGA-28-2514 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-28-5204       TCGA-28-5207       TCGA-28-5208       TCGA-28-5209 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-28-5211       TCGA-28-5213       TCGA-28-5214       TCGA-28-5215 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-28-5216       TCGA-28-5218       TCGA-28-5219       TCGA-28-5220 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-28-6450       TCGA-32-1970       TCGA-32-1977       TCGA-32-1979 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-32-1980       TCGA-32-1982       TCGA-32-1986       TCGA-32-1991 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-32-2491       TCGA-32-2494       TCGA-32-2495       TCGA-32-2615 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-32-2632       TCGA-32-2634       TCGA-32-2638       TCGA-32-4208 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-32-4209       TCGA-32-4210       TCGA-32-4211       TCGA-32-4213 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-32-4719       TCGA-32-5222       TCGA-41-2571       TCGA-41-2572 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-41-2573       TCGA-41-2575       TCGA-41-3392       TCGA-41-3393 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-41-3915       TCGA-41-4097       TCGA-41-5651       TCGA-41-6646 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-74-6573       TCGA-74-6575       TCGA-74-6577       TCGA-74-6578 
  "PIK3R1 MUTATED"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-74-6584       TCGA-76-4925       TCGA-76-4926       TCGA-76-4927 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-76-4928       TCGA-76-4929       TCGA-76-4931       TCGA-76-4932 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-76-4934       TCGA-76-4935       TCGA-76-6191       TCGA-76-6192 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-76-6193       TCGA-76-6280       TCGA-76-6282       TCGA-76-6285 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-76-6286       TCGA-76-6656       TCGA-76-6657       TCGA-76-6661 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-76-6662       TCGA-76-6663       TCGA-76-6664       TCGA-81-5910 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-81-5911       TCGA-87-5896 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-02-0003       TCGA-02-0033       TCGA-02-0047       TCGA-02-0055 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-02-2470       TCGA-02-2483       TCGA-02-2485       TCGA-02-2486 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0119       TCGA-06-0122       TCGA-06-0124       TCGA-06-0126 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0128       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
  "PIK3R1 MUTATED"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0137       TCGA-06-0139       TCGA-06-0140       TCGA-06-0141 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0142       TCGA-06-0145       TCGA-06-0151       TCGA-06-0152 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0154       TCGA-06-0155       TCGA-06-0157       TCGA-06-0158 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0165       TCGA-06-0166       TCGA-06-0167       TCGA-06-0168 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0169       TCGA-06-0173       TCGA-06-0174       TCGA-06-0178 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0184       TCGA-06-0185       TCGA-06-0188       TCGA-06-0189 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0192       TCGA-06-0195       TCGA-06-0209       TCGA-06-0213 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0214       TCGA-06-0216       TCGA-06-0219       TCGA-06-0237 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0238       TCGA-06-0240       TCGA-06-0241       TCGA-06-0644 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0645       TCGA-06-0646       TCGA-06-0648       TCGA-06-0649 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0650       TCGA-06-0686       TCGA-06-0743       TCGA-06-0744 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-0745       TCGA-06-0747       TCGA-06-0749       TCGA-06-0750 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-06-0875       TCGA-06-0876       TCGA-06-0877       TCGA-06-0878 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-06-0879       TCGA-06-0881       TCGA-06-0882       TCGA-06-0939 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-1804       TCGA-06-1806       TCGA-06-2557       TCGA-06-2558 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-2559       TCGA-06-2561       TCGA-06-2562       TCGA-06-2563 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-06-2564       TCGA-06-2565       TCGA-06-2567       TCGA-06-2569 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-2570       TCGA-06-5408       TCGA-06-5410       TCGA-06-5411 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-5412       TCGA-06-5413       TCGA-06-5414       TCGA-06-5415 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-5417       TCGA-06-5418       TCGA-06-5856       TCGA-06-5858 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-5859       TCGA-06-6388       TCGA-06-6389       TCGA-06-6390 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-6391       TCGA-06-6693       TCGA-06-6694       TCGA-06-6695 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-06-6697       TCGA-06-6698       TCGA-06-6699       TCGA-06-6700 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-06-6701       TCGA-08-0386       TCGA-12-0615       TCGA-12-0616 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-12-0618       TCGA-12-0619       TCGA-12-0688       TCGA-12-0692 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-12-0821       TCGA-12-1597       TCGA-12-3649       TCGA-12-3650 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-12-3652       TCGA-12-3653       TCGA-12-5295       TCGA-12-5299 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-12-5301       TCGA-14-0740       TCGA-14-0781       TCGA-14-0786 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-14-0787       TCGA-14-0789       TCGA-14-0790       TCGA-14-0813 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-14-0817       TCGA-14-0862       TCGA-14-0871       TCGA-14-1043 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-14-1395       TCGA-14-1450       TCGA-14-1456       TCGA-14-1823 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-14-1825       TCGA-14-1829       TCGA-14-2554       TCGA-14-3476 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-14-4157       TCGA-15-0742       TCGA-15-1444       TCGA-16-0846 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-16-0861       TCGA-16-1045       TCGA-19-1390       TCGA-19-1790 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-19-2619       TCGA-19-2620       TCGA-19-2623       TCGA-19-2624 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-19-2625       TCGA-19-2629       TCGA-19-2631       TCGA-19-4068 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-19-5947       TCGA-19-5950       TCGA-19-5951       TCGA-19-5952 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-19-5953       TCGA-19-5954       TCGA-19-5955       TCGA-19-5958 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED"   "PIK3R1 MUTATED" 
      TCGA-19-5959       TCGA-19-5960       TCGA-26-1439       TCGA-26-1442 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-26-5132       TCGA-26-5133       TCGA-26-5134       TCGA-26-5135 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-26-5136       TCGA-26-5139       TCGA-26-6173       TCGA-26-6174 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-27-1830       TCGA-27-1831       TCGA-27-1832       TCGA-27-1833 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-27-1834       TCGA-27-1835       TCGA-27-1836       TCGA-27-1837 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-27-1838       TCGA-27-2518       TCGA-27-2519       TCGA-27-2521 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-27-2523       TCGA-27-2524       TCGA-27-2526       TCGA-27-2527 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-27-2528       TCGA-28-1747       TCGA-28-1753       TCGA-28-2499 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-28-2502       TCGA-28-2509       TCGA-28-2513       TCGA-28-2514 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-28-5204       TCGA-28-5207       TCGA-28-5208       TCGA-28-5209 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-28-5211       TCGA-28-5213       TCGA-28-5214       TCGA-28-5215 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-28-5216       TCGA-28-5218       TCGA-28-5219       TCGA-28-5220 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-28-6450       TCGA-32-1970       TCGA-32-1977       TCGA-32-1979 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-32-1980       TCGA-32-1982       TCGA-32-1986       TCGA-32-1991 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-32-2491       TCGA-32-2494       TCGA-32-2495       TCGA-32-2615 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-32-2632       TCGA-32-2634       TCGA-32-2638       TCGA-32-4208 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-32-4209       TCGA-32-4210       TCGA-32-4211       TCGA-32-4213 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-32-4719       TCGA-32-5222       TCGA-41-2571       TCGA-41-2572 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-41-2573       TCGA-41-2575       TCGA-41-3392       TCGA-41-3393 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-41-3915       TCGA-41-4097       TCGA-41-5651       TCGA-41-6646 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-74-6573       TCGA-74-6575       TCGA-74-6577       TCGA-74-6578 
  "PIK3R1 MUTATED"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-74-6584       TCGA-76-4925       TCGA-76-4926       TCGA-76-4927 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" 
      TCGA-76-4928       TCGA-76-4929       TCGA-76-4931       TCGA-76-4932 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-76-4934       TCGA-76-4935       TCGA-76-6191       TCGA-76-6192 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-76-6193       TCGA-76-6280       TCGA-76-6282       TCGA-76-6285 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-76-6286       TCGA-76-6656       TCGA-76-6657       TCGA-76-6661 
"PIK3R1 WILD-TYPE"   "PIK3R1 MUTATED"   "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" 
      TCGA-76-6662       TCGA-76-6663       TCGA-76-6664       TCGA-81-5910 
  "PIK3R1 MUTATED" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
      TCGA-81-5911       TCGA-87-5896 
"PIK3R1 WILD-TYPE" "PIK3R1 WILD-TYPE" 
[1] "hr=" "1.1"
D2V2, continuous
D2V3, binary
                  cls
clus                 0   1
  PIK3R1 MUTATED     9  23
  PIK3R1 WILD-TYPE  91 155
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3R1 MUTATED      9   23
  PIK3R1 WILD-TYPE   91  155
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  FEMALE              9               91
  MALE               23              155
D2V4, continuous
                  vv
clus               GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  PIK3R1 MUTATED                               1                   0
  PIK3R1 WILD-TYPE                             8                   4
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  PIK3R1 MUTATED                                31
  PIK3R1 WILD-TYPE                             234
D2V5, multiclass
                                 clus
vv                                PIK3R1 MUTATED PIK3R1 WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                1                8
  TREATED PRIMARY GBM                          0                4
  UNTREATED PRIMARY (DE NOVO) GBM             31              234
D2V6, binary
                  cls
clus                 0   1
  PIK3R1 MUTATED    23   9
  PIK3R1 WILD-TYPE 163  83
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3R1 MUTATED     23    9
  PIK3R1 WILD-TYPE  163   83
     clus
vv    PIK3R1 MUTATED PIK3R1 WILD-TYPE
  NO              23              163
  YES              9               83

Clustering(3) Variable = BRAF MUTATION ANALYSIS
D3V1, survival
                sevent
clus2              0   1
  BRAF MUTATED     1   5
  BRAF WILD-TYPE  71 201
  BRAF MUTATED BRAF WILD-TYPE 
             6            272 
  BRAF MUTATED BRAF WILD-TYPE 
             5            201 
$`BRAF MUTATED`
TCGA-02-0047 TCGA-06-0151 TCGA-06-0185 TCGA-06-0644 TCGA-06-1806 TCGA-76-4928 
       14.73        46.59        73.84        12.33        15.32         3.09 

$`BRAF WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
        4.73         2.83         2.50        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 
       16.21         2.70         0.26         4.04         0.10        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       32.52        10.52        18.74        23.08        10.75         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        9.21         2.20         2.33        11.80        12.79         8.65 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 
        3.19         5.46        10.65         5.29        11.41        19.04 
TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 TCGA-06-0188 
        3.12         0.23         2.20        53.98        40.37        28.47 
TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 
       14.93        18.31         7.04         3.91         0.20        12.43 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       22.49         0.36        10.36        11.80        20.42        14.96 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        3.22         4.47         9.67         2.04        23.57         9.40 
TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
       22.32        19.56         5.39         2.70         2.17         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
       43.46        46.19         5.65         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 
        5.42        20.94        13.61         1.08         0.76         4.93 
TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 
        9.27         2.83        30.64         5.95         6.81         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 
        0.43        31.50        11.24         3.55         8.35         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 
        8.81         8.98         8.55         5.10         2.73         3.75 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 
        6.15         4.57         3.95         7.79         5.39         1.48 
TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        0.49         7.36         8.32        12.85         4.77         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
        4.77         4.96        15.72        14.01        14.43         1.64 
TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 
       10.39        24.13         2.63        10.62        14.04        11.54 
TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        34.52        11.74        13.12         3.22         2.04 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
       11.97         0.95        23.05         2.24        11.24        13.78 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 
        1.35         5.39         2.89        28.93         0.79         1.38 
TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 
       58.78        40.96        17.85         7.63         7.17        17.49 
TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 
        0.39         3.42         9.86        50.53         3.91         4.31 
TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 
       29.03        25.38         5.06         9.67         4.87         7.53 
TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 
        0.16         4.08        16.47         7.00         4.50         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 
        5.39         5.29         5.42        13.87        31.33         9.40 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
       14.86         5.49         8.88         1.22         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.33         4.80        16.60         9.86        18.25        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.76        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.78 
TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 
        2.53         1.22         3.12         0.66         4.77         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 
        5.26         3.91         9.04        15.58        14.53        11.77 
TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 
        9.80        14.20         7.79        13.64         4.21         8.52 
TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 
       10.49         5.42        15.39         0.10        19.50         1.18 
TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 
        4.67        12.69        16.93        12.23        20.78        15.02 
TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 
       15.95         8.84        22.78        21.17        21.14        19.86 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.72        12.59        19.86        10.85        10.62         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
       13.35         8.94         9.53         0.99         4.44        11.84 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
        0.20        11.54         7.76         3.45        20.91         4.34 
TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4929 
       14.33         7.50         4.80         4.54        17.59         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        9.17        47.93         2.53        10.78        16.70         3.29 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 
        2.70        11.38        17.06         8.35        20.98         4.83 
TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 
        5.03         0.23         9.27         7.73         7.79         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.72        26.30 

  BRAF MUTATED BRAF WILD-TYPE 
          3.09           0.10 
  BRAF MUTATED BRAF WILD-TYPE 
         73.84          58.78 
  BRAF MUTATED BRAF WILD-TYPE 
        15.025          8.600 
[1] "3.1 - 73.8 (15.0)" "0.1 - 58.8 (8.6)" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0240     TCGA-06-0241     TCGA-06-0644 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-06-0645     TCGA-06-0646     TCGA-06-0648     TCGA-06-0649 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0650     TCGA-06-0686     TCGA-06-0743     TCGA-06-0744 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0745     TCGA-06-0747     TCGA-06-0749     TCGA-06-0750 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0875     TCGA-06-0876     TCGA-06-0877     TCGA-06-0878 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0879     TCGA-06-0881     TCGA-06-0882     TCGA-06-0939 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-1804     TCGA-06-1806     TCGA-06-2557     TCGA-06-2558 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2561     TCGA-06-2562     TCGA-06-2563 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-2564     TCGA-06-2565     TCGA-06-2567     TCGA-06-2569 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-2570     TCGA-06-5408     TCGA-06-5410     TCGA-06-5411 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-5412     TCGA-06-5413     TCGA-06-5414     TCGA-06-5415 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-5417     TCGA-06-5418     TCGA-06-5856     TCGA-06-5858 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-5859     TCGA-06-6388     TCGA-06-6389     TCGA-06-6390 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-6391     TCGA-06-6693     TCGA-06-6694     TCGA-06-6695 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-6697     TCGA-06-6698     TCGA-06-6699     TCGA-06-6700 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-6701     TCGA-08-0386     TCGA-12-0615     TCGA-12-0616 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-12-0618     TCGA-12-0619     TCGA-12-0688     TCGA-12-0692 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-12-0821     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5299 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-12-5301     TCGA-14-0740     TCGA-14-0781     TCGA-14-0786 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-0787     TCGA-14-0789     TCGA-14-0790     TCGA-14-0813 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-0817     TCGA-14-0862     TCGA-14-0871     TCGA-14-1043 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-1395     TCGA-14-1450     TCGA-14-1456     TCGA-14-1823 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-1825     TCGA-14-1829     TCGA-14-2554     TCGA-14-3476 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-4157     TCGA-15-0742     TCGA-15-1444     TCGA-16-0846 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-16-0861     TCGA-16-1045     TCGA-19-1390     TCGA-19-1790 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-2619     TCGA-19-2620     TCGA-19-2623     TCGA-19-2624 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2629     TCGA-19-2631     TCGA-19-4068 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5958 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1439     TCGA-26-1442 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-26-6173     TCGA-26-6174 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-27-1830     TCGA-27-1831     TCGA-27-1832     TCGA-27-1833 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-27-1834     TCGA-27-1835     TCGA-27-1836     TCGA-27-1837 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-27-1838     TCGA-27-2518     TCGA-27-2519     TCGA-27-2521 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-27-2523     TCGA-27-2524     TCGA-27-2526     TCGA-27-2527 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-27-2528     TCGA-28-1747     TCGA-28-1753     TCGA-28-2499 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-2502     TCGA-28-2509     TCGA-28-2513     TCGA-28-2514 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-5204     TCGA-28-5207     TCGA-28-5208     TCGA-28-5209 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-5211     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5218     TCGA-28-5219     TCGA-28-5220 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-6450     TCGA-32-1970     TCGA-32-1977     TCGA-32-1979 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-1980     TCGA-32-1982     TCGA-32-1986     TCGA-32-1991 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-2491     TCGA-32-2494     TCGA-32-2495     TCGA-32-2615 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-2632     TCGA-32-2634     TCGA-32-2638     TCGA-32-4208 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-4209     TCGA-32-4210     TCGA-32-4211     TCGA-32-4213 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-4719     TCGA-32-5222     TCGA-41-2571     TCGA-41-2572 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-41-2573     TCGA-41-2575     TCGA-41-3392     TCGA-41-3393 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-41-3915     TCGA-41-4097     TCGA-41-5651     TCGA-41-6646 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-74-6573     TCGA-74-6575     TCGA-74-6577     TCGA-74-6578 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-74-6584     TCGA-76-4925     TCGA-76-4926     TCGA-76-4927 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-4928     TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-4934     TCGA-76-4935     TCGA-76-6191     TCGA-76-6192 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-6193     TCGA-76-6280     TCGA-76-6282     TCGA-76-6285 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-6286     TCGA-76-6656     TCGA-76-6657     TCGA-76-6661 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-6662     TCGA-76-6663     TCGA-76-6664     TCGA-81-5910 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-81-5911     TCGA-87-5896 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0240     TCGA-06-0241     TCGA-06-0644 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-06-0645     TCGA-06-0646     TCGA-06-0648     TCGA-06-0649 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0650     TCGA-06-0686     TCGA-06-0743     TCGA-06-0744 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0745     TCGA-06-0747     TCGA-06-0749     TCGA-06-0750 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0875     TCGA-06-0876     TCGA-06-0877     TCGA-06-0878 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0879     TCGA-06-0881     TCGA-06-0882     TCGA-06-0939 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-1804     TCGA-06-1806     TCGA-06-2557     TCGA-06-2558 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2561     TCGA-06-2562     TCGA-06-2563 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-2564     TCGA-06-2565     TCGA-06-2567     TCGA-06-2569 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-2570     TCGA-06-5408     TCGA-06-5410     TCGA-06-5411 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-5412     TCGA-06-5413     TCGA-06-5414     TCGA-06-5415 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-5417     TCGA-06-5418     TCGA-06-5856     TCGA-06-5858 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-5859     TCGA-06-6388     TCGA-06-6389     TCGA-06-6390 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-6391     TCGA-06-6693     TCGA-06-6694     TCGA-06-6695 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-6697     TCGA-06-6698     TCGA-06-6699     TCGA-06-6700 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-6701     TCGA-08-0386     TCGA-12-0615     TCGA-12-0616 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-12-0618     TCGA-12-0619     TCGA-12-0688     TCGA-12-0692 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-12-0821     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5299 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-12-5301     TCGA-14-0740     TCGA-14-0781     TCGA-14-0786 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-0787     TCGA-14-0789     TCGA-14-0790     TCGA-14-0813 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-0817     TCGA-14-0862     TCGA-14-0871     TCGA-14-1043 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-1395     TCGA-14-1450     TCGA-14-1456     TCGA-14-1823 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-1825     TCGA-14-1829     TCGA-14-2554     TCGA-14-3476 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-4157     TCGA-15-0742     TCGA-15-1444     TCGA-16-0846 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-16-0861     TCGA-16-1045     TCGA-19-1390     TCGA-19-1790 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-2619     TCGA-19-2620     TCGA-19-2623     TCGA-19-2624 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2629     TCGA-19-2631     TCGA-19-4068 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5958 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1439     TCGA-26-1442 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-26-6173     TCGA-26-6174 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-27-1830     TCGA-27-1831     TCGA-27-1832     TCGA-27-1833 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-27-1834     TCGA-27-1835     TCGA-27-1836     TCGA-27-1837 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-27-1838     TCGA-27-2518     TCGA-27-2519     TCGA-27-2521 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-27-2523     TCGA-27-2524     TCGA-27-2526     TCGA-27-2527 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-27-2528     TCGA-28-1747     TCGA-28-1753     TCGA-28-2499 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-2502     TCGA-28-2509     TCGA-28-2513     TCGA-28-2514 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-5204     TCGA-28-5207     TCGA-28-5208     TCGA-28-5209 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-5211     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5218     TCGA-28-5219     TCGA-28-5220 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-6450     TCGA-32-1970     TCGA-32-1977     TCGA-32-1979 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-1980     TCGA-32-1982     TCGA-32-1986     TCGA-32-1991 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-2491     TCGA-32-2494     TCGA-32-2495     TCGA-32-2615 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-2632     TCGA-32-2634     TCGA-32-2638     TCGA-32-4208 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-4209     TCGA-32-4210     TCGA-32-4211     TCGA-32-4213 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-4719     TCGA-32-5222     TCGA-41-2571     TCGA-41-2572 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-41-2573     TCGA-41-2575     TCGA-41-3392     TCGA-41-3393 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-41-3915     TCGA-41-4097     TCGA-41-5651     TCGA-41-6646 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-74-6573     TCGA-74-6575     TCGA-74-6577     TCGA-74-6578 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-74-6584     TCGA-76-4925     TCGA-76-4926     TCGA-76-4927 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-4928     TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-4934     TCGA-76-4935     TCGA-76-6191     TCGA-76-6192 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-6193     TCGA-76-6280     TCGA-76-6282     TCGA-76-6285 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-6286     TCGA-76-6656     TCGA-76-6657     TCGA-76-6661 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-6662     TCGA-76-6663     TCGA-76-6664     TCGA-81-5910 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-81-5911     TCGA-87-5896 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0240     TCGA-06-0241     TCGA-06-0644 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE"   "BRAF MUTATED" 
    TCGA-06-0645     TCGA-06-0646     TCGA-06-0648     TCGA-06-0649 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0650     TCGA-06-0686     TCGA-06-0743     TCGA-06-0744 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0745     TCGA-06-0747     TCGA-06-0749     TCGA-06-0750 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0875     TCGA-06-0876     TCGA-06-0877     TCGA-06-0878 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-0879     TCGA-06-0881     TCGA-06-0882     TCGA-06-0939 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-1804     TCGA-06-1806     TCGA-06-2557     TCGA-06-2558 
"BRAF WILD-TYPE"   "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2561     TCGA-06-2562     TCGA-06-2563 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-2564     TCGA-06-2565     TCGA-06-2567     TCGA-06-2569 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-2570     TCGA-06-5408     TCGA-06-5410     TCGA-06-5411 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-5412     TCGA-06-5413     TCGA-06-5414     TCGA-06-5415 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-5417     TCGA-06-5418     TCGA-06-5856     TCGA-06-5858 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-5859     TCGA-06-6388     TCGA-06-6389     TCGA-06-6390 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-6391     TCGA-06-6693     TCGA-06-6694     TCGA-06-6695 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-6697     TCGA-06-6698     TCGA-06-6699     TCGA-06-6700 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-6701     TCGA-08-0386     TCGA-12-0615     TCGA-12-0616 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-12-0618     TCGA-12-0619     TCGA-12-0688     TCGA-12-0692 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-12-0821     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5299 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-12-5301     TCGA-14-0740     TCGA-14-0781     TCGA-14-0786 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-0787     TCGA-14-0789     TCGA-14-0790     TCGA-14-0813 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-0817     TCGA-14-0862     TCGA-14-0871     TCGA-14-1043 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-1395     TCGA-14-1450     TCGA-14-1456     TCGA-14-1823 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-1825     TCGA-14-1829     TCGA-14-2554     TCGA-14-3476 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-4157     TCGA-15-0742     TCGA-15-1444     TCGA-16-0846 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-16-0861     TCGA-16-1045     TCGA-19-1390     TCGA-19-1790 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-2619     TCGA-19-2620     TCGA-19-2623     TCGA-19-2624 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2629     TCGA-19-2631     TCGA-19-4068 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5958 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1439     TCGA-26-1442 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-26-6173     TCGA-26-6174 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-27-1830     TCGA-27-1831     TCGA-27-1832     TCGA-27-1833 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-27-1834     TCGA-27-1835     TCGA-27-1836     TCGA-27-1837 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-27-1838     TCGA-27-2518     TCGA-27-2519     TCGA-27-2521 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-27-2523     TCGA-27-2524     TCGA-27-2526     TCGA-27-2527 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-27-2528     TCGA-28-1747     TCGA-28-1753     TCGA-28-2499 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-2502     TCGA-28-2509     TCGA-28-2513     TCGA-28-2514 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-5204     TCGA-28-5207     TCGA-28-5208     TCGA-28-5209 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-5211     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5218     TCGA-28-5219     TCGA-28-5220 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-6450     TCGA-32-1970     TCGA-32-1977     TCGA-32-1979 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-1980     TCGA-32-1982     TCGA-32-1986     TCGA-32-1991 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-2491     TCGA-32-2494     TCGA-32-2495     TCGA-32-2615 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-2632     TCGA-32-2634     TCGA-32-2638     TCGA-32-4208 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-4209     TCGA-32-4210     TCGA-32-4211     TCGA-32-4213 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-4719     TCGA-32-5222     TCGA-41-2571     TCGA-41-2572 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-41-2573     TCGA-41-2575     TCGA-41-3392     TCGA-41-3393 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-41-3915     TCGA-41-4097     TCGA-41-5651     TCGA-41-6646 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-74-6573     TCGA-74-6575     TCGA-74-6577     TCGA-74-6578 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-74-6584     TCGA-76-4925     TCGA-76-4926     TCGA-76-4927 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-4928     TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
  "BRAF MUTATED" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-4934     TCGA-76-4935     TCGA-76-6191     TCGA-76-6192 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-6193     TCGA-76-6280     TCGA-76-6282     TCGA-76-6285 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-6286     TCGA-76-6656     TCGA-76-6657     TCGA-76-6661 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-6662     TCGA-76-6663     TCGA-76-6664     TCGA-81-5910 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-81-5911     TCGA-87-5896 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" 
[1] "hr=" "1.9"
D3V2, continuous
D3V3, binary
                cls
clus               0   1
  BRAF MUTATED     2   4
  BRAF WILD-TYPE  98 174
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED      2    4
  BRAF WILD-TYPE   98  174
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  FEMALE            2             98
  MALE              4            174
D3V4, continuous
                vv
clus             GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  BRAF MUTATED                               2                   0
  BRAF WILD-TYPE                             7                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  BRAF MUTATED                                 4
  BRAF WILD-TYPE                             261
D3V5, multiclass
                                 clus
vv                                BRAF MUTATED BRAF WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              2              7
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            4            261
D3V6, binary
                cls
clus               0   1
  BRAF MUTATED     3   3
  BRAF WILD-TYPE 183  89
[1] "tbl2"
                cls
clus             [,1] [,2]
  BRAF MUTATED      3    3
  BRAF WILD-TYPE  183   89
     clus
vv    BRAF MUTATED BRAF WILD-TYPE
  NO             3            183
  YES            3             89

Clustering(4) Variable = IDH1 MUTATION ANALYSIS
D4V1, survival
                sevent
clus2              0   1
  IDH1 MUTATED    10   4
  IDH1 WILD-TYPE  62 202
  IDH1 MUTATED IDH1 WILD-TYPE 
            14            264 
  IDH1 MUTATED IDH1 WILD-TYPE 
             4            202 
$`IDH1 MUTATED`
TCGA-02-2483 TCGA-06-0128 TCGA-06-0129 TCGA-06-2570 TCGA-06-5417 TCGA-06-6389 
       15.32        22.72        32.52        31.50         5.10         7.79 
TCGA-06-6701 TCGA-14-1456 TCGA-14-4157 TCGA-15-1444 TCGA-19-2629 TCGA-26-1442 
        4.96        40.96         3.42        50.53        16.47        31.33 
TCGA-27-2521 TCGA-32-4208 
       10.39        21.14 

$`IDH1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2485 
        4.73         2.83        14.73         2.50        12.92        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0130 
       16.21         2.70         0.26         4.04         0.10        10.52 
TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       18.74        23.08        10.75         0.20         9.21         2.20 
TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        2.33        46.59        11.80        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 
        5.46        10.65         5.29        11.41        19.04         3.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 
        0.23         2.20        53.98        40.37        73.84        28.47 
TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 
       14.93        18.31         7.04         3.91         0.20        12.43 
TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 
       22.49         0.36        10.36        11.80        20.42        14.96 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.33         3.22         4.47         9.67         2.04        23.57 
TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 
        9.40        22.32        19.56         5.39         2.70         2.17 
TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 
        0.92        43.46        46.19         5.65         7.17        22.98 
TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 
        5.85         5.42        20.94        13.61        15.32         1.08 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 
        0.76         4.93         9.27         2.83        30.64         5.95 
TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        6.81         4.37         0.43        11.24         3.55         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 
        4.54         8.81         8.98         8.55         2.73         3.75 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        6.15         4.57         3.95         5.39         1.48         0.49 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
        7.36         8.32        12.85         4.77         1.55         4.77 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       15.72        14.01        14.43         1.64        10.39        24.13 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        2.63        10.62        14.04        11.54        10.95        34.52 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       11.74        13.12         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1823 
        2.89        28.93         0.79         1.38        58.78        17.85 
TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-15-0742 TCGA-16-0846 
        7.63         7.17        17.49         0.39         9.86         3.91 
TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 
        4.31        29.03        25.38         5.06         9.67         4.87 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 
        7.53         0.16         4.08         7.00         4.50         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 
       11.28         8.02        18.64         4.73         7.96         1.78 
TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-5132 TCGA-26-5133 
        5.39         5.29         5.42        13.87         9.40        14.86 
TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 
        5.49         8.88         1.22         1.58         7.92         2.33 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 
        4.80        16.60         9.86        18.25        33.14        21.30 
TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2523 
       30.05        14.04        11.51        24.76        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26         3.91 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
        9.04        15.58        14.53        11.77         9.80        14.20 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
        7.79        13.64         4.21         8.52        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       22.78        21.17        19.86         3.72        12.59        19.86 
TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 
       10.85        10.62         0.85        13.35         8.94         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 
        0.99         4.44        11.84         0.20        11.54         7.76 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 
        3.45        20.91         4.34        14.33         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 
        4.54        17.59         3.09         3.65         9.17        47.93 
TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
        2.53        10.78        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.27         7.73         7.79         1.61        17.72        26.30 

  IDH1 MUTATED IDH1 WILD-TYPE 
          3.42           0.10 
  IDH1 MUTATED IDH1 WILD-TYPE 
         50.53          73.84 
  IDH1 MUTATED IDH1 WILD-TYPE 
        18.805          8.535 
[1] "3.4 - 50.5 (18.8)" "0.1 - 73.8 (8.5)" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
  "IDH1 MUTATED"   "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0240     TCGA-06-0241     TCGA-06-0644 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0645     TCGA-06-0646     TCGA-06-0648     TCGA-06-0649 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0650     TCGA-06-0686     TCGA-06-0743     TCGA-06-0744 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0745     TCGA-06-0747     TCGA-06-0749     TCGA-06-0750 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0875     TCGA-06-0876     TCGA-06-0877     TCGA-06-0878 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0879     TCGA-06-0881     TCGA-06-0882     TCGA-06-0939 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-1804     TCGA-06-1806     TCGA-06-2557     TCGA-06-2558 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2561     TCGA-06-2562     TCGA-06-2563 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-2564     TCGA-06-2565     TCGA-06-2567     TCGA-06-2569 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-2570     TCGA-06-5408     TCGA-06-5410     TCGA-06-5411 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-5412     TCGA-06-5413     TCGA-06-5414     TCGA-06-5415 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-5417     TCGA-06-5418     TCGA-06-5856     TCGA-06-5858 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-5859     TCGA-06-6388     TCGA-06-6389     TCGA-06-6390 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-06-6391     TCGA-06-6693     TCGA-06-6694     TCGA-06-6695 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-6697     TCGA-06-6698     TCGA-06-6699     TCGA-06-6700 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-6701     TCGA-08-0386     TCGA-12-0615     TCGA-12-0616 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-12-0618     TCGA-12-0619     TCGA-12-0688     TCGA-12-0692 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-12-0821     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5299 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-12-5301     TCGA-14-0740     TCGA-14-0781     TCGA-14-0786 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-14-0787     TCGA-14-0789     TCGA-14-0790     TCGA-14-0813 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-14-0817     TCGA-14-0862     TCGA-14-0871     TCGA-14-1043 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-14-1395     TCGA-14-1450     TCGA-14-1456     TCGA-14-1823 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-14-1825     TCGA-14-1829     TCGA-14-2554     TCGA-14-3476 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-14-4157     TCGA-15-0742     TCGA-15-1444     TCGA-16-0846 
  "IDH1 MUTATED" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-16-0861     TCGA-16-1045     TCGA-19-1390     TCGA-19-1790 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-19-2619     TCGA-19-2620     TCGA-19-2623     TCGA-19-2624 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2629     TCGA-19-2631     TCGA-19-4068 
"IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5958 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1439     TCGA-26-1442 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-26-6173     TCGA-26-6174 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-27-1830     TCGA-27-1831     TCGA-27-1832     TCGA-27-1833 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-27-1834     TCGA-27-1835     TCGA-27-1836     TCGA-27-1837 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-27-1838     TCGA-27-2518     TCGA-27-2519     TCGA-27-2521 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" 
    TCGA-27-2523     TCGA-27-2524     TCGA-27-2526     TCGA-27-2527 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-27-2528     TCGA-28-1747     TCGA-28-1753     TCGA-28-2499 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-2502     TCGA-28-2509     TCGA-28-2513     TCGA-28-2514 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-5204     TCGA-28-5207     TCGA-28-5208     TCGA-28-5209 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-5211     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5218     TCGA-28-5219     TCGA-28-5220 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-6450     TCGA-32-1970     TCGA-32-1977     TCGA-32-1979 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-32-1980     TCGA-32-1982     TCGA-32-1986     TCGA-32-1991 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-32-2491     TCGA-32-2494     TCGA-32-2495     TCGA-32-2615 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-32-2632     TCGA-32-2634     TCGA-32-2638     TCGA-32-4208 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" 
    TCGA-32-4209     TCGA-32-4210     TCGA-32-4211     TCGA-32-4213 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-32-4719     TCGA-32-5222     TCGA-41-2571     TCGA-41-2572 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-41-2573     TCGA-41-2575     TCGA-41-3392     TCGA-41-3393 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-41-3915     TCGA-41-4097     TCGA-41-5651     TCGA-41-6646 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-74-6573     TCGA-74-6575     TCGA-74-6577     TCGA-74-6578 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-74-6584     TCGA-76-4925     TCGA-76-4926     TCGA-76-4927 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-4928     TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-4934     TCGA-76-4935     TCGA-76-6191     TCGA-76-6192 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-6193     TCGA-76-6280     TCGA-76-6282     TCGA-76-6285 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-6286     TCGA-76-6656     TCGA-76-6657     TCGA-76-6661 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-6662     TCGA-76-6663     TCGA-76-6664     TCGA-81-5910 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-81-5911     TCGA-87-5896 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
  "IDH1 MUTATED"   "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0240     TCGA-06-0241     TCGA-06-0644 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0645     TCGA-06-0646     TCGA-06-0648     TCGA-06-0649 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0650     TCGA-06-0686     TCGA-06-0743     TCGA-06-0744 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0745     TCGA-06-0747     TCGA-06-0749     TCGA-06-0750 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0875     TCGA-06-0876     TCGA-06-0877     TCGA-06-0878 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0879     TCGA-06-0881     TCGA-06-0882     TCGA-06-0939 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-1804     TCGA-06-1806     TCGA-06-2557     TCGA-06-2558 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2561     TCGA-06-2562     TCGA-06-2563 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-2564     TCGA-06-2565     TCGA-06-2567     TCGA-06-2569 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-2570     TCGA-06-5408     TCGA-06-5410     TCGA-06-5411 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-5412     TCGA-06-5413     TCGA-06-5414     TCGA-06-5415 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-5417     TCGA-06-5418     TCGA-06-5856     TCGA-06-5858 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-5859     TCGA-06-6388     TCGA-06-6389     TCGA-06-6390 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-06-6391     TCGA-06-6693     TCGA-06-6694     TCGA-06-6695 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-6697     TCGA-06-6698     TCGA-06-6699     TCGA-06-6700 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-6701     TCGA-08-0386     TCGA-12-0615     TCGA-12-0616 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-12-0618     TCGA-12-0619     TCGA-12-0688     TCGA-12-0692 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-12-0821     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5299 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-12-5301     TCGA-14-0740     TCGA-14-0781     TCGA-14-0786 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-14-0787     TCGA-14-0789     TCGA-14-0790     TCGA-14-0813 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-14-0817     TCGA-14-0862     TCGA-14-0871     TCGA-14-1043 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-14-1395     TCGA-14-1450     TCGA-14-1456     TCGA-14-1823 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-14-1825     TCGA-14-1829     TCGA-14-2554     TCGA-14-3476 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-14-4157     TCGA-15-0742     TCGA-15-1444     TCGA-16-0846 
  "IDH1 MUTATED" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-16-0861     TCGA-16-1045     TCGA-19-1390     TCGA-19-1790 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-19-2619     TCGA-19-2620     TCGA-19-2623     TCGA-19-2624 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2629     TCGA-19-2631     TCGA-19-4068 
"IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5958 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1439     TCGA-26-1442 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-26-6173     TCGA-26-6174 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-27-1830     TCGA-27-1831     TCGA-27-1832     TCGA-27-1833 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-27-1834     TCGA-27-1835     TCGA-27-1836     TCGA-27-1837 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-27-1838     TCGA-27-2518     TCGA-27-2519     TCGA-27-2521 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" 
    TCGA-27-2523     TCGA-27-2524     TCGA-27-2526     TCGA-27-2527 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-27-2528     TCGA-28-1747     TCGA-28-1753     TCGA-28-2499 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-2502     TCGA-28-2509     TCGA-28-2513     TCGA-28-2514 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-5204     TCGA-28-5207     TCGA-28-5208     TCGA-28-5209 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-5211     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5218     TCGA-28-5219     TCGA-28-5220 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-6450     TCGA-32-1970     TCGA-32-1977     TCGA-32-1979 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-32-1980     TCGA-32-1982     TCGA-32-1986     TCGA-32-1991 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-32-2491     TCGA-32-2494     TCGA-32-2495     TCGA-32-2615 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-32-2632     TCGA-32-2634     TCGA-32-2638     TCGA-32-4208 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" 
    TCGA-32-4209     TCGA-32-4210     TCGA-32-4211     TCGA-32-4213 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-32-4719     TCGA-32-5222     TCGA-41-2571     TCGA-41-2572 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-41-2573     TCGA-41-2575     TCGA-41-3392     TCGA-41-3393 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-41-3915     TCGA-41-4097     TCGA-41-5651     TCGA-41-6646 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-74-6573     TCGA-74-6575     TCGA-74-6577     TCGA-74-6578 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-74-6584     TCGA-76-4925     TCGA-76-4926     TCGA-76-4927 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-4928     TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-4934     TCGA-76-4935     TCGA-76-6191     TCGA-76-6192 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-6193     TCGA-76-6280     TCGA-76-6282     TCGA-76-6285 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-6286     TCGA-76-6656     TCGA-76-6657     TCGA-76-6661 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-6662     TCGA-76-6663     TCGA-76-6664     TCGA-81-5910 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-81-5911     TCGA-87-5896 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
  "IDH1 MUTATED"   "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0240     TCGA-06-0241     TCGA-06-0644 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0645     TCGA-06-0646     TCGA-06-0648     TCGA-06-0649 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0650     TCGA-06-0686     TCGA-06-0743     TCGA-06-0744 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0745     TCGA-06-0747     TCGA-06-0749     TCGA-06-0750 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0875     TCGA-06-0876     TCGA-06-0877     TCGA-06-0878 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-0879     TCGA-06-0881     TCGA-06-0882     TCGA-06-0939 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-1804     TCGA-06-1806     TCGA-06-2557     TCGA-06-2558 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2561     TCGA-06-2562     TCGA-06-2563 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-2564     TCGA-06-2565     TCGA-06-2567     TCGA-06-2569 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-2570     TCGA-06-5408     TCGA-06-5410     TCGA-06-5411 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-5412     TCGA-06-5413     TCGA-06-5414     TCGA-06-5415 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-5417     TCGA-06-5418     TCGA-06-5856     TCGA-06-5858 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-5859     TCGA-06-6388     TCGA-06-6389     TCGA-06-6390 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-06-6391     TCGA-06-6693     TCGA-06-6694     TCGA-06-6695 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-6697     TCGA-06-6698     TCGA-06-6699     TCGA-06-6700 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-06-6701     TCGA-08-0386     TCGA-12-0615     TCGA-12-0616 
  "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-12-0618     TCGA-12-0619     TCGA-12-0688     TCGA-12-0692 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-12-0821     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5299 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-12-5301     TCGA-14-0740     TCGA-14-0781     TCGA-14-0786 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-14-0787     TCGA-14-0789     TCGA-14-0790     TCGA-14-0813 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-14-0817     TCGA-14-0862     TCGA-14-0871     TCGA-14-1043 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-14-1395     TCGA-14-1450     TCGA-14-1456     TCGA-14-1823 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-14-1825     TCGA-14-1829     TCGA-14-2554     TCGA-14-3476 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-14-4157     TCGA-15-0742     TCGA-15-1444     TCGA-16-0846 
  "IDH1 MUTATED" "IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" 
    TCGA-16-0861     TCGA-16-1045     TCGA-19-1390     TCGA-19-1790 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-19-2619     TCGA-19-2620     TCGA-19-2623     TCGA-19-2624 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2629     TCGA-19-2631     TCGA-19-4068 
"IDH1 WILD-TYPE"   "IDH1 MUTATED" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5958 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1439     TCGA-26-1442 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-26-6173     TCGA-26-6174 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-27-1830     TCGA-27-1831     TCGA-27-1832     TCGA-27-1833 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-27-1834     TCGA-27-1835     TCGA-27-1836     TCGA-27-1837 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-27-1838     TCGA-27-2518     TCGA-27-2519     TCGA-27-2521 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" 
    TCGA-27-2523     TCGA-27-2524     TCGA-27-2526     TCGA-27-2527 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-27-2528     TCGA-28-1747     TCGA-28-1753     TCGA-28-2499 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-2502     TCGA-28-2509     TCGA-28-2513     TCGA-28-2514 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-5204     TCGA-28-5207     TCGA-28-5208     TCGA-28-5209 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-5211     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5218     TCGA-28-5219     TCGA-28-5220 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-28-6450     TCGA-32-1970     TCGA-32-1977     TCGA-32-1979 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-32-1980     TCGA-32-1982     TCGA-32-1986     TCGA-32-1991 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-32-2491     TCGA-32-2494     TCGA-32-2495     TCGA-32-2615 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-32-2632     TCGA-32-2634     TCGA-32-2638     TCGA-32-4208 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE"   "IDH1 MUTATED" 
    TCGA-32-4209     TCGA-32-4210     TCGA-32-4211     TCGA-32-4213 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-32-4719     TCGA-32-5222     TCGA-41-2571     TCGA-41-2572 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-41-2573     TCGA-41-2575     TCGA-41-3392     TCGA-41-3393 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-41-3915     TCGA-41-4097     TCGA-41-5651     TCGA-41-6646 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-74-6573     TCGA-74-6575     TCGA-74-6577     TCGA-74-6578 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-74-6584     TCGA-76-4925     TCGA-76-4926     TCGA-76-4927 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-4928     TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-4934     TCGA-76-4935     TCGA-76-6191     TCGA-76-6192 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-6193     TCGA-76-6280     TCGA-76-6282     TCGA-76-6285 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-6286     TCGA-76-6656     TCGA-76-6657     TCGA-76-6661 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-76-6662     TCGA-76-6663     TCGA-76-6664     TCGA-81-5910 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
    TCGA-81-5911     TCGA-87-5896 
"IDH1 WILD-TYPE" "IDH1 WILD-TYPE" 
[1] "hr=" "5.5"
D4V2, continuous
D4V3, binary
                cls
clus               0   1
  IDH1 MUTATED     3  11
  IDH1 WILD-TYPE  97 167
[1] "tbl2"
                cls
clus             [,1] [,2]
  IDH1 MUTATED      3   11
  IDH1 WILD-TYPE   97  167
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  FEMALE            3             97
  MALE             11            167
D4V4, continuous
                vv
clus             GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  IDH1 MUTATED                               1                   0
  IDH1 WILD-TYPE                             8                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  IDH1 MUTATED                                13
  IDH1 WILD-TYPE                             252
D4V5, multiclass
                                 clus
vv                                IDH1 MUTATED IDH1 WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              1              8
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM           13            252
D4V6, binary
                cls
clus               0   1
  IDH1 MUTATED    13   1
  IDH1 WILD-TYPE 173  91
[1] "tbl2"
                cls
clus             [,1] [,2]
  IDH1 MUTATED     13    1
  IDH1 WILD-TYPE  173   91
     clus
vv    IDH1 MUTATED IDH1 WILD-TYPE
  NO            13            173
  YES            1             91

Clustering(5) Variable = TP53 MUTATION ANALYSIS
D5V1, survival
                sevent
clus2              0   1
  TP53 MUTATED    30  48
  TP53 WILD-TYPE  42 158
  TP53 MUTATED TP53 WILD-TYPE 
            78            200 
  TP53 MUTATED TP53 WILD-TYPE 
            48            158 
$`TP53 MUTATED`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0055 TCGA-02-2483 TCGA-02-2485 TCGA-06-0128 
        4.73         2.83         2.50        15.32        15.45        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0184 TCGA-06-0188 TCGA-06-0189 TCGA-06-0195 
       32.52        10.52        40.37        28.47        14.93         7.04 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0241 TCGA-06-0644 TCGA-06-0743 TCGA-06-0744 
       10.36        11.80        14.96        12.33        22.32        19.56 
TCGA-06-0875 TCGA-06-0876 TCGA-06-2558 TCGA-06-2559 TCGA-06-2563 TCGA-06-2567 
       43.46        46.19         0.76         4.93        30.64         4.37 
TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5417 TCGA-06-5858 TCGA-06-6389 
        0.43        31.50        11.24         5.10         6.15         7.79 
TCGA-06-6694 TCGA-06-6698 TCGA-06-6701 TCGA-12-0618 TCGA-12-0619 TCGA-14-0740 
        7.36         4.77         4.96         1.64        10.39        11.97 
TCGA-14-0813 TCGA-14-0817 TCGA-14-0871 TCGA-14-1456 TCGA-14-1825 TCGA-14-4157 
        1.35         5.39        28.93        40.96         7.63         3.42 
TCGA-15-1444 TCGA-16-0846 TCGA-19-1390 TCGA-19-2623 TCGA-19-2625 TCGA-19-2629 
       50.53         3.91        25.38         7.53         4.08        16.47 
TCGA-26-1442 TCGA-26-5133 TCGA-26-5136 TCGA-27-1830 TCGA-27-1835 TCGA-27-1836 
       31.33        14.86         1.22         4.80        21.30        30.05 
TCGA-27-1838 TCGA-27-2519 TCGA-27-2521 TCGA-28-1753 TCGA-28-2509 TCGA-28-5207 
       11.51        10.39        10.39         1.22         4.77         9.04 
TCGA-28-5216 TCGA-28-5219 TCGA-32-1970 TCGA-32-2491 TCGA-32-2634 TCGA-32-4208 
       13.64         8.52        15.39        12.23        22.78        21.14 
TCGA-32-4210 TCGA-41-2575 TCGA-41-5651 TCGA-74-6573 TCGA-76-4925 TCGA-76-4929 
        3.72         9.53        11.54         3.45         4.80         3.65 
TCGA-76-4934 TCGA-76-6193 TCGA-76-6286 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        2.53         2.70        20.98         9.27         7.73         7.79 

$`TP53 WILD-TYPE`
TCGA-02-0047 TCGA-02-2470 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
       14.73        12.92        16.21         2.70         0.26         4.04 
TCGA-06-0126 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
        0.10        18.74        23.08        10.75         0.20         9.21 
TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        2.20         2.33        46.59        11.80        12.79         8.65 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 
        3.19         5.46        10.65         5.29        11.41        19.04 
TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0185 TCGA-06-0192 
        3.12         0.23         2.20        53.98        73.84        18.31 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0240 
        3.91         0.20        12.43        22.49         0.36        20.42 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 
        3.22         4.47         9.67         2.04        23.57         9.40 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0877 TCGA-06-0878 
        5.39         2.70         2.17         0.92         5.65         7.17 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 
       22.98         5.85         5.42        20.94        13.61        15.32 
TCGA-06-2557 TCGA-06-2561 TCGA-06-2562 TCGA-06-2564 TCGA-06-2565 TCGA-06-5410 
        1.08         9.27         2.83         5.95         6.81         3.55 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 
        8.35         4.54         8.81         8.98         8.55         2.73 
TCGA-06-5856 TCGA-06-5859 TCGA-06-6388 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
        3.75         4.57         3.95         5.39         1.48         0.49 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 TCGA-06-6700 TCGA-08-0386 TCGA-12-0615 
        8.32        12.85         1.55         4.77        15.72        14.01 
TCGA-12-0616 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 
       14.43        24.13         2.63        10.62        14.04        11.54 
TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        34.52        11.74        13.12         3.22         2.04 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0862 
        0.95        23.05         2.24        11.24        13.78         2.89 
TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1823 TCGA-14-1829 TCGA-14-2554 
        0.79         1.38        58.78        17.85         7.17        17.49 
TCGA-14-3476 TCGA-15-0742 TCGA-16-0861 TCGA-16-1045 TCGA-19-1790 TCGA-19-2619 
        0.39         9.86         4.31        29.03         5.06         9.67 
TCGA-19-2620 TCGA-19-2624 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        4.87         0.16         7.00         4.50         6.64        11.28 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.64         4.73         7.96         1.78         5.39 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-5132 TCGA-26-5134 TCGA-26-5135 
        5.29         5.42        13.87         9.40         5.49         8.88 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        1.58         7.92         2.33        16.60         9.86        18.25 
TCGA-27-1834 TCGA-27-1837 TCGA-27-2518 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
       33.14        14.04        24.76        16.08         7.59         2.86 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-2499 TCGA-28-2502 TCGA-28-2513 
       14.40        15.78         2.53         3.12         0.66         7.30 
TCGA-28-2514 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 
        5.26         3.91        15.58        14.53        11.77         9.80 
TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 TCGA-28-5220 TCGA-28-6450 TCGA-32-1977 
       14.20         7.79         4.21        10.49         5.42         0.10 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2494 
       19.50         1.18         4.67        12.69        16.93        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2638 TCGA-32-4209 TCGA-32-4211 
       15.02        15.95         8.84        21.17        19.86        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        10.62         0.85        13.35         8.94 
TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 TCGA-74-6575 
        0.99         4.44        11.84         0.20         7.76        20.91 
TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 
        4.34        14.33         7.50         4.54        17.59         3.09 
TCGA-76-4931 TCGA-76-4932 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6280 
        9.17        47.93        10.78        16.70         3.29        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-81-5910 
       17.06         8.35         4.83         5.03         0.23         1.61 
TCGA-81-5911 TCGA-87-5896 
       17.72        26.30 

  TP53 MUTATED TP53 WILD-TYPE 
          0.43           0.10 
  TP53 MUTATED TP53 WILD-TYPE 
         50.53          73.84 
  TP53 MUTATED TP53 WILD-TYPE 
        10.375          8.350 
[1] "0.4 - 50.5 (10.4)" "0.1 - 73.8 (8.3)" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-06-0238     TCGA-06-0240     TCGA-06-0241     TCGA-06-0644 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-06-0645     TCGA-06-0646     TCGA-06-0648     TCGA-06-0649 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0650     TCGA-06-0686     TCGA-06-0743     TCGA-06-0744 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-06-0745     TCGA-06-0747     TCGA-06-0749     TCGA-06-0750 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0875     TCGA-06-0876     TCGA-06-0877     TCGA-06-0878 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0879     TCGA-06-0881     TCGA-06-0882     TCGA-06-0939 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-1804     TCGA-06-1806     TCGA-06-2557     TCGA-06-2558 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-06-2559     TCGA-06-2561     TCGA-06-2562     TCGA-06-2563 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-06-2564     TCGA-06-2565     TCGA-06-2567     TCGA-06-2569 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-06-2570     TCGA-06-5408     TCGA-06-5410     TCGA-06-5411 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-5412     TCGA-06-5413     TCGA-06-5414     TCGA-06-5415 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-5417     TCGA-06-5418     TCGA-06-5856     TCGA-06-5858 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-06-5859     TCGA-06-6388     TCGA-06-6389     TCGA-06-6390 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-6391     TCGA-06-6693     TCGA-06-6694     TCGA-06-6695 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-6697     TCGA-06-6698     TCGA-06-6699     TCGA-06-6700 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-6701     TCGA-08-0386     TCGA-12-0615     TCGA-12-0616 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-12-0618     TCGA-12-0619     TCGA-12-0688     TCGA-12-0692 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-12-0821     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5299 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-12-5301     TCGA-14-0740     TCGA-14-0781     TCGA-14-0786 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-14-0787     TCGA-14-0789     TCGA-14-0790     TCGA-14-0813 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-14-0817     TCGA-14-0862     TCGA-14-0871     TCGA-14-1043 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-14-1395     TCGA-14-1450     TCGA-14-1456     TCGA-14-1823 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-14-1825     TCGA-14-1829     TCGA-14-2554     TCGA-14-3476 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-14-4157     TCGA-15-0742     TCGA-15-1444     TCGA-16-0846 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-16-0861     TCGA-16-1045     TCGA-19-1390     TCGA-19-1790 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-19-2619     TCGA-19-2620     TCGA-19-2623     TCGA-19-2624 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2629     TCGA-19-2631     TCGA-19-4068 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5958 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1439     TCGA-26-1442 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-26-6173     TCGA-26-6174 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-27-1830     TCGA-27-1831     TCGA-27-1832     TCGA-27-1833 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-27-1834     TCGA-27-1835     TCGA-27-1836     TCGA-27-1837 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-27-1838     TCGA-27-2518     TCGA-27-2519     TCGA-27-2521 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-27-2523     TCGA-27-2524     TCGA-27-2526     TCGA-27-2527 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-27-2528     TCGA-28-1747     TCGA-28-1753     TCGA-28-2499 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-28-2502     TCGA-28-2509     TCGA-28-2513     TCGA-28-2514 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-28-5204     TCGA-28-5207     TCGA-28-5208     TCGA-28-5209 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-28-5211     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5218     TCGA-28-5219     TCGA-28-5220 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-28-6450     TCGA-32-1970     TCGA-32-1977     TCGA-32-1979 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-32-1980     TCGA-32-1982     TCGA-32-1986     TCGA-32-1991 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-32-2491     TCGA-32-2494     TCGA-32-2495     TCGA-32-2615 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-32-2632     TCGA-32-2634     TCGA-32-2638     TCGA-32-4208 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-32-4209     TCGA-32-4210     TCGA-32-4211     TCGA-32-4213 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-32-4719     TCGA-32-5222     TCGA-41-2571     TCGA-41-2572 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-41-2573     TCGA-41-2575     TCGA-41-3392     TCGA-41-3393 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-41-3915     TCGA-41-4097     TCGA-41-5651     TCGA-41-6646 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-74-6573     TCGA-74-6575     TCGA-74-6577     TCGA-74-6578 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-74-6584     TCGA-76-4925     TCGA-76-4926     TCGA-76-4927 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-76-4928     TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-76-4934     TCGA-76-4935     TCGA-76-6191     TCGA-76-6192 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-76-6193     TCGA-76-6280     TCGA-76-6282     TCGA-76-6285 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-76-6286     TCGA-76-6656     TCGA-76-6657     TCGA-76-6661 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-76-6662     TCGA-76-6663     TCGA-76-6664     TCGA-81-5910 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-81-5911     TCGA-87-5896 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-06-0238     TCGA-06-0240     TCGA-06-0241     TCGA-06-0644 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-06-0645     TCGA-06-0646     TCGA-06-0648     TCGA-06-0649 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0650     TCGA-06-0686     TCGA-06-0743     TCGA-06-0744 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-06-0745     TCGA-06-0747     TCGA-06-0749     TCGA-06-0750 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0875     TCGA-06-0876     TCGA-06-0877     TCGA-06-0878 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0879     TCGA-06-0881     TCGA-06-0882     TCGA-06-0939 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-1804     TCGA-06-1806     TCGA-06-2557     TCGA-06-2558 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-06-2559     TCGA-06-2561     TCGA-06-2562     TCGA-06-2563 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-06-2564     TCGA-06-2565     TCGA-06-2567     TCGA-06-2569 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-06-2570     TCGA-06-5408     TCGA-06-5410     TCGA-06-5411 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-5412     TCGA-06-5413     TCGA-06-5414     TCGA-06-5415 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-5417     TCGA-06-5418     TCGA-06-5856     TCGA-06-5858 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-06-5859     TCGA-06-6388     TCGA-06-6389     TCGA-06-6390 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-6391     TCGA-06-6693     TCGA-06-6694     TCGA-06-6695 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-6697     TCGA-06-6698     TCGA-06-6699     TCGA-06-6700 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-6701     TCGA-08-0386     TCGA-12-0615     TCGA-12-0616 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-12-0618     TCGA-12-0619     TCGA-12-0688     TCGA-12-0692 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-12-0821     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5299 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-12-5301     TCGA-14-0740     TCGA-14-0781     TCGA-14-0786 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-14-0787     TCGA-14-0789     TCGA-14-0790     TCGA-14-0813 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-14-0817     TCGA-14-0862     TCGA-14-0871     TCGA-14-1043 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-14-1395     TCGA-14-1450     TCGA-14-1456     TCGA-14-1823 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-14-1825     TCGA-14-1829     TCGA-14-2554     TCGA-14-3476 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-14-4157     TCGA-15-0742     TCGA-15-1444     TCGA-16-0846 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-16-0861     TCGA-16-1045     TCGA-19-1390     TCGA-19-1790 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-19-2619     TCGA-19-2620     TCGA-19-2623     TCGA-19-2624 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2629     TCGA-19-2631     TCGA-19-4068 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5958 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1439     TCGA-26-1442 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-26-6173     TCGA-26-6174 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-27-1830     TCGA-27-1831     TCGA-27-1832     TCGA-27-1833 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-27-1834     TCGA-27-1835     TCGA-27-1836     TCGA-27-1837 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-27-1838     TCGA-27-2518     TCGA-27-2519     TCGA-27-2521 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-27-2523     TCGA-27-2524     TCGA-27-2526     TCGA-27-2527 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-27-2528     TCGA-28-1747     TCGA-28-1753     TCGA-28-2499 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-28-2502     TCGA-28-2509     TCGA-28-2513     TCGA-28-2514 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-28-5204     TCGA-28-5207     TCGA-28-5208     TCGA-28-5209 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-28-5211     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5218     TCGA-28-5219     TCGA-28-5220 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-28-6450     TCGA-32-1970     TCGA-32-1977     TCGA-32-1979 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-32-1980     TCGA-32-1982     TCGA-32-1986     TCGA-32-1991 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-32-2491     TCGA-32-2494     TCGA-32-2495     TCGA-32-2615 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-32-2632     TCGA-32-2634     TCGA-32-2638     TCGA-32-4208 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-32-4209     TCGA-32-4210     TCGA-32-4211     TCGA-32-4213 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-32-4719     TCGA-32-5222     TCGA-41-2571     TCGA-41-2572 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-41-2573     TCGA-41-2575     TCGA-41-3392     TCGA-41-3393 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-41-3915     TCGA-41-4097     TCGA-41-5651     TCGA-41-6646 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-74-6573     TCGA-74-6575     TCGA-74-6577     TCGA-74-6578 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-74-6584     TCGA-76-4925     TCGA-76-4926     TCGA-76-4927 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-76-4928     TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-76-4934     TCGA-76-4935     TCGA-76-6191     TCGA-76-6192 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-76-6193     TCGA-76-6280     TCGA-76-6282     TCGA-76-6285 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-76-6286     TCGA-76-6656     TCGA-76-6657     TCGA-76-6661 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-76-6662     TCGA-76-6663     TCGA-76-6664     TCGA-81-5910 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-81-5911     TCGA-87-5896 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-06-0238     TCGA-06-0240     TCGA-06-0241     TCGA-06-0644 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-06-0645     TCGA-06-0646     TCGA-06-0648     TCGA-06-0649 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0650     TCGA-06-0686     TCGA-06-0743     TCGA-06-0744 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-06-0745     TCGA-06-0747     TCGA-06-0749     TCGA-06-0750 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0875     TCGA-06-0876     TCGA-06-0877     TCGA-06-0878 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-0879     TCGA-06-0881     TCGA-06-0882     TCGA-06-0939 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-1804     TCGA-06-1806     TCGA-06-2557     TCGA-06-2558 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-06-2559     TCGA-06-2561     TCGA-06-2562     TCGA-06-2563 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-06-2564     TCGA-06-2565     TCGA-06-2567     TCGA-06-2569 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-06-2570     TCGA-06-5408     TCGA-06-5410     TCGA-06-5411 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-5412     TCGA-06-5413     TCGA-06-5414     TCGA-06-5415 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-5417     TCGA-06-5418     TCGA-06-5856     TCGA-06-5858 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-06-5859     TCGA-06-6388     TCGA-06-6389     TCGA-06-6390 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-6391     TCGA-06-6693     TCGA-06-6694     TCGA-06-6695 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-06-6697     TCGA-06-6698     TCGA-06-6699     TCGA-06-6700 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-06-6701     TCGA-08-0386     TCGA-12-0615     TCGA-12-0616 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-12-0618     TCGA-12-0619     TCGA-12-0688     TCGA-12-0692 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-12-0821     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5299 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-12-5301     TCGA-14-0740     TCGA-14-0781     TCGA-14-0786 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-14-0787     TCGA-14-0789     TCGA-14-0790     TCGA-14-0813 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-14-0817     TCGA-14-0862     TCGA-14-0871     TCGA-14-1043 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-14-1395     TCGA-14-1450     TCGA-14-1456     TCGA-14-1823 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-14-1825     TCGA-14-1829     TCGA-14-2554     TCGA-14-3476 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-14-4157     TCGA-15-0742     TCGA-15-1444     TCGA-16-0846 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-16-0861     TCGA-16-1045     TCGA-19-1390     TCGA-19-1790 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-19-2619     TCGA-19-2620     TCGA-19-2623     TCGA-19-2624 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2629     TCGA-19-2631     TCGA-19-4068 
  "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5958 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1439     TCGA-26-1442 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-26-6173     TCGA-26-6174 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-27-1830     TCGA-27-1831     TCGA-27-1832     TCGA-27-1833 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-27-1834     TCGA-27-1835     TCGA-27-1836     TCGA-27-1837 
"TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-27-1838     TCGA-27-2518     TCGA-27-2519     TCGA-27-2521 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED"   "TP53 MUTATED" 
    TCGA-27-2523     TCGA-27-2524     TCGA-27-2526     TCGA-27-2527 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-27-2528     TCGA-28-1747     TCGA-28-1753     TCGA-28-2499 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-28-2502     TCGA-28-2509     TCGA-28-2513     TCGA-28-2514 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-28-5204     TCGA-28-5207     TCGA-28-5208     TCGA-28-5209 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-28-5211     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5218     TCGA-28-5219     TCGA-28-5220 
  "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-28-6450     TCGA-32-1970     TCGA-32-1977     TCGA-32-1979 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-32-1980     TCGA-32-1982     TCGA-32-1986     TCGA-32-1991 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-32-2491     TCGA-32-2494     TCGA-32-2495     TCGA-32-2615 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-32-2632     TCGA-32-2634     TCGA-32-2638     TCGA-32-4208 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE"   "TP53 MUTATED" 
    TCGA-32-4209     TCGA-32-4210     TCGA-32-4211     TCGA-32-4213 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-32-4719     TCGA-32-5222     TCGA-41-2571     TCGA-41-2572 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-41-2573     TCGA-41-2575     TCGA-41-3392     TCGA-41-3393 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-41-3915     TCGA-41-4097     TCGA-41-5651     TCGA-41-6646 
"TP53 WILD-TYPE" "TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-74-6573     TCGA-74-6575     TCGA-74-6577     TCGA-74-6578 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-74-6584     TCGA-76-4925     TCGA-76-4926     TCGA-76-4927 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-76-4928     TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"TP53 WILD-TYPE"   "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-76-4934     TCGA-76-4935     TCGA-76-6191     TCGA-76-6192 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-76-6193     TCGA-76-6280     TCGA-76-6282     TCGA-76-6285 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-76-6286     TCGA-76-6656     TCGA-76-6657     TCGA-76-6661 
  "TP53 MUTATED" "TP53 WILD-TYPE" "TP53 WILD-TYPE" "TP53 WILD-TYPE" 
    TCGA-76-6662     TCGA-76-6663     TCGA-76-6664     TCGA-81-5910 
  "TP53 MUTATED"   "TP53 MUTATED"   "TP53 MUTATED" "TP53 WILD-TYPE" 
    TCGA-81-5911     TCGA-87-5896 
"TP53 WILD-TYPE" "TP53 WILD-TYPE" 
[1] "hr=" "1.7"
D5V2, continuous
D5V3, binary
                cls
clus               0   1
  TP53 MUTATED    30  48
  TP53 WILD-TYPE  70 130
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     30   48
  TP53 WILD-TYPE   70  130
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  FEMALE           30             70
  MALE             48            130
D5V4, continuous
                vv
clus             GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  TP53 MUTATED                               1                   0
  TP53 WILD-TYPE                             8                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  TP53 MUTATED                                77
  TP53 WILD-TYPE                             188
D5V5, multiclass
                                 clus
vv                                TP53 MUTATED TP53 WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              1              8
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM           77            188
D5V6, binary
                cls
clus               0   1
  TP53 MUTATED    57  21
  TP53 WILD-TYPE 129  71
[1] "tbl2"
                cls
clus             [,1] [,2]
  TP53 MUTATED     57   21
  TP53 WILD-TYPE  129   71
     clus
vv    TP53 MUTATED TP53 WILD-TYPE
  NO            57            129
  YES           21             71

Clustering(6) Variable = PTEN MUTATION ANALYSIS
D6V1, survival
                sevent
clus2              0   1
  PTEN MUTATED    23  62
  PTEN WILD-TYPE  49 144
  PTEN MUTATED PTEN WILD-TYPE 
            85            193 
  PTEN MUTATED PTEN WILD-TYPE 
            62            144 
$`PTEN MUTATED`
TCGA-02-0055 TCGA-02-2470 TCGA-06-0124 TCGA-06-0155 TCGA-06-0157 TCGA-06-0166 
        2.50        12.92         4.04         8.65         3.19         5.29 
TCGA-06-0168 TCGA-06-0184 TCGA-06-0188 TCGA-06-0192 TCGA-06-0195 TCGA-06-0213 
       19.04        40.37        28.47        18.31         7.04         0.20 
TCGA-06-0216 TCGA-06-0644 TCGA-06-0649 TCGA-06-0743 TCGA-06-0749 TCGA-06-0875 
       22.49        12.33         2.04        22.32         2.17        43.46 
TCGA-06-0876 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-2558 
       46.19         5.85         5.42        20.94        13.61         0.76 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2565 TCGA-06-5411 TCGA-06-5412 TCGA-06-5418 
        4.93         9.27         6.81         8.35         4.54         2.73 
TCGA-06-5858 TCGA-12-0618 TCGA-12-1597 TCGA-12-3649 TCGA-14-0781 TCGA-14-0813 
        6.15         1.64        14.04        11.54         0.95         1.35 
TCGA-14-1395 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-2625 TCGA-19-5952 
        1.38         3.91         4.31        29.03         4.08        18.64 
TCGA-19-5953 TCGA-19-5955 TCGA-19-5959 TCGA-26-5132 TCGA-26-6174 TCGA-27-1834 
        4.73         1.78         5.29         9.40         2.33        33.14 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2519 TCGA-27-2524 TCGA-27-2526 TCGA-28-1753 
       14.04        11.51        10.39         7.59         2.86         1.22 
TCGA-28-2502 TCGA-28-2513 TCGA-28-5209 TCGA-28-5216 TCGA-32-1977 TCGA-32-1982 
        0.66         7.30        14.53        13.64         0.10         4.67 
TCGA-32-1991 TCGA-32-2495 TCGA-32-2634 TCGA-32-4210 TCGA-32-4213 TCGA-32-5222 
       16.93        15.02        22.78         3.72        19.86        10.62 
TCGA-41-2571 TCGA-41-2573 TCGA-41-3915 TCGA-41-4097 TCGA-74-6577 TCGA-76-4925 
        0.85         8.94        11.84         0.20         4.34         4.80 
TCGA-76-4927 TCGA-76-4931 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
       17.59         9.17         2.53        10.78        16.70         3.29 
TCGA-76-6286 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6664 TCGA-81-5910 
       20.98         5.03         0.23         9.27         7.79         1.61 
TCGA-81-5911 
       17.72 

$`PTEN WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 
        4.73         2.83        14.73        15.32        15.45        16.21 
TCGA-06-0119 TCGA-06-0122 TCGA-06-0126 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
        2.70         0.26         0.10        22.72        32.52        10.52 
TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       18.74        23.08        10.75         0.20         9.21         2.20 
TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0158 TCGA-06-0165 
        2.33        46.59        11.80        12.79         5.46        10.65 
TCGA-06-0167 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0185 
       11.41         3.12         0.23         2.20        53.98        73.84 
TCGA-06-0189 TCGA-06-0209 TCGA-06-0214 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
       14.93         3.91        12.43         0.36        10.36        11.80 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0650 
       20.42        14.96         3.22         4.47         9.67        23.57 
TCGA-06-0686 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0750 TCGA-06-0877 
        9.40        19.56         5.39         2.70         0.92         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-1806 TCGA-06-2557 TCGA-06-2562 TCGA-06-2563 
        7.17        22.98        15.32         1.08         2.83        30.64 
TCGA-06-2564 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 
        5.95         4.37         0.43        31.50        11.24         3.55 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5856 TCGA-06-5859 
        8.81         8.98         8.55         5.10         3.75         4.57 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        3.95         7.79         5.39         1.48         0.49         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 
       15.72        14.01        14.43        10.39        24.13         2.63 
TCGA-12-0821 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       10.62        10.95        34.52        11.74        13.12         3.22 
TCGA-12-5301 TCGA-14-0740 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 
        2.04        11.97        23.05         2.24        11.24        13.78 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1450 TCGA-14-1456 
        5.39         2.89        28.93         0.79        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 
        9.86        50.53        25.38         5.06         9.67         4.87 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 
        7.53         0.16        16.47         7.00         4.50         6.64 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5954 TCGA-19-5958 TCGA-19-5960 TCGA-26-1439 
       11.28         8.02         7.96         5.39         5.42        13.87 
TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
       31.33        14.86         5.49         8.88         1.22         1.58 
TCGA-26-6173 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1835 
        7.92         4.80        16.60         9.86        18.25        21.30 
TCGA-27-1836 TCGA-27-2518 TCGA-27-2521 TCGA-27-2523 TCGA-27-2527 TCGA-27-2528 
       30.05        24.76        10.39        16.08        14.40        15.78 
TCGA-28-1747 TCGA-28-2499 TCGA-28-2509 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        2.53         3.12         4.77         5.26         3.91         9.04 
TCGA-28-5208 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5218 
       15.58        11.77         9.80        14.20         7.79         4.21 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1979 TCGA-32-1980 
        8.52        10.49         5.42        15.39        19.50         1.18 
TCGA-32-1986 TCGA-32-2491 TCGA-32-2494 TCGA-32-2615 TCGA-32-2632 TCGA-32-2638 
       12.69        12.23        20.78        15.95         8.84        21.17 
TCGA-32-4208 TCGA-32-4209 TCGA-32-4211 TCGA-32-4719 TCGA-41-2572 TCGA-41-2575 
       21.14        19.86        12.59        10.85        13.35         9.53 
TCGA-41-3392 TCGA-41-3393 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
        0.99         4.44        11.54         7.76         3.45        20.91 
TCGA-74-6578 TCGA-74-6584 TCGA-76-4926 TCGA-76-4928 TCGA-76-4929 TCGA-76-4932 
       14.33         7.50         4.54         3.09         3.65        47.93 
TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6656 TCGA-76-6663 
        2.70        11.38        17.06         8.35         4.83         7.73 
TCGA-87-5896 
       26.30 

  PTEN MUTATED PTEN WILD-TYPE 
           0.1            0.1 
  PTEN MUTATED PTEN WILD-TYPE 
         46.19          73.84 
  PTEN MUTATED PTEN WILD-TYPE 
          7.30           9.21 
[1] "0.1 - 46.2 (7.3)" "0.1 - 73.8 (9.2)"
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0240     TCGA-06-0241     TCGA-06-0644 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-0645     TCGA-06-0646     TCGA-06-0648     TCGA-06-0649 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-0650     TCGA-06-0686     TCGA-06-0743     TCGA-06-0744 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0745     TCGA-06-0747     TCGA-06-0749     TCGA-06-0750 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0875     TCGA-06-0876     TCGA-06-0877     TCGA-06-0878 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0879     TCGA-06-0881     TCGA-06-0882     TCGA-06-0939 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-06-1804     TCGA-06-1806     TCGA-06-2557     TCGA-06-2558 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-2559     TCGA-06-2561     TCGA-06-2562     TCGA-06-2563 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-2564     TCGA-06-2565     TCGA-06-2567     TCGA-06-2569 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-2570     TCGA-06-5408     TCGA-06-5410     TCGA-06-5411 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-5412     TCGA-06-5413     TCGA-06-5414     TCGA-06-5415 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-5417     TCGA-06-5418     TCGA-06-5856     TCGA-06-5858 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-5859     TCGA-06-6388     TCGA-06-6389     TCGA-06-6390 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-6391     TCGA-06-6693     TCGA-06-6694     TCGA-06-6695 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-6697     TCGA-06-6698     TCGA-06-6699     TCGA-06-6700 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-6701     TCGA-08-0386     TCGA-12-0615     TCGA-12-0616 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-12-0618     TCGA-12-0619     TCGA-12-0688     TCGA-12-0692 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-12-0821     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5299 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-12-5301     TCGA-14-0740     TCGA-14-0781     TCGA-14-0786 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-14-0787     TCGA-14-0789     TCGA-14-0790     TCGA-14-0813 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-14-0817     TCGA-14-0862     TCGA-14-0871     TCGA-14-1043 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-14-1395     TCGA-14-1450     TCGA-14-1456     TCGA-14-1823 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-14-1825     TCGA-14-1829     TCGA-14-2554     TCGA-14-3476 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-14-4157     TCGA-15-0742     TCGA-15-1444     TCGA-16-0846 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-16-0861     TCGA-16-1045     TCGA-19-1390     TCGA-19-1790 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-19-2619     TCGA-19-2620     TCGA-19-2623     TCGA-19-2624 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2629     TCGA-19-2631     TCGA-19-4068 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5958 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1439     TCGA-26-1442 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-26-6173     TCGA-26-6174 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-27-1830     TCGA-27-1831     TCGA-27-1832     TCGA-27-1833 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-27-1834     TCGA-27-1835     TCGA-27-1836     TCGA-27-1837 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-27-1838     TCGA-27-2518     TCGA-27-2519     TCGA-27-2521 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-27-2523     TCGA-27-2524     TCGA-27-2526     TCGA-27-2527 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-27-2528     TCGA-28-1747     TCGA-28-1753     TCGA-28-2499 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-28-2502     TCGA-28-2509     TCGA-28-2513     TCGA-28-2514 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-28-5204     TCGA-28-5207     TCGA-28-5208     TCGA-28-5209 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-28-5211     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5218     TCGA-28-5219     TCGA-28-5220 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-28-6450     TCGA-32-1970     TCGA-32-1977     TCGA-32-1979 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-32-1980     TCGA-32-1982     TCGA-32-1986     TCGA-32-1991 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-32-2491     TCGA-32-2494     TCGA-32-2495     TCGA-32-2615 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-32-2632     TCGA-32-2634     TCGA-32-2638     TCGA-32-4208 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-32-4209     TCGA-32-4210     TCGA-32-4211     TCGA-32-4213 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-32-4719     TCGA-32-5222     TCGA-41-2571     TCGA-41-2572 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-41-2573     TCGA-41-2575     TCGA-41-3392     TCGA-41-3393 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-41-3915     TCGA-41-4097     TCGA-41-5651     TCGA-41-6646 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-74-6573     TCGA-74-6575     TCGA-74-6577     TCGA-74-6578 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-74-6584     TCGA-76-4925     TCGA-76-4926     TCGA-76-4927 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-76-4928     TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-76-4934     TCGA-76-4935     TCGA-76-6191     TCGA-76-6192 
  "PTEN MUTATED"   "PTEN MUTATED"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-76-6193     TCGA-76-6280     TCGA-76-6282     TCGA-76-6285 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-76-6286     TCGA-76-6656     TCGA-76-6657     TCGA-76-6661 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-76-6662     TCGA-76-6663     TCGA-76-6664     TCGA-81-5910 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-81-5911     TCGA-87-5896 
  "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0240     TCGA-06-0241     TCGA-06-0644 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-0645     TCGA-06-0646     TCGA-06-0648     TCGA-06-0649 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-0650     TCGA-06-0686     TCGA-06-0743     TCGA-06-0744 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0745     TCGA-06-0747     TCGA-06-0749     TCGA-06-0750 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0875     TCGA-06-0876     TCGA-06-0877     TCGA-06-0878 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0879     TCGA-06-0881     TCGA-06-0882     TCGA-06-0939 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-06-1804     TCGA-06-1806     TCGA-06-2557     TCGA-06-2558 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-2559     TCGA-06-2561     TCGA-06-2562     TCGA-06-2563 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-2564     TCGA-06-2565     TCGA-06-2567     TCGA-06-2569 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-2570     TCGA-06-5408     TCGA-06-5410     TCGA-06-5411 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-5412     TCGA-06-5413     TCGA-06-5414     TCGA-06-5415 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-5417     TCGA-06-5418     TCGA-06-5856     TCGA-06-5858 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-5859     TCGA-06-6388     TCGA-06-6389     TCGA-06-6390 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-6391     TCGA-06-6693     TCGA-06-6694     TCGA-06-6695 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-6697     TCGA-06-6698     TCGA-06-6699     TCGA-06-6700 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-6701     TCGA-08-0386     TCGA-12-0615     TCGA-12-0616 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-12-0618     TCGA-12-0619     TCGA-12-0688     TCGA-12-0692 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-12-0821     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5299 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-12-5301     TCGA-14-0740     TCGA-14-0781     TCGA-14-0786 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-14-0787     TCGA-14-0789     TCGA-14-0790     TCGA-14-0813 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-14-0817     TCGA-14-0862     TCGA-14-0871     TCGA-14-1043 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-14-1395     TCGA-14-1450     TCGA-14-1456     TCGA-14-1823 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-14-1825     TCGA-14-1829     TCGA-14-2554     TCGA-14-3476 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-14-4157     TCGA-15-0742     TCGA-15-1444     TCGA-16-0846 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-16-0861     TCGA-16-1045     TCGA-19-1390     TCGA-19-1790 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-19-2619     TCGA-19-2620     TCGA-19-2623     TCGA-19-2624 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2629     TCGA-19-2631     TCGA-19-4068 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5958 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1439     TCGA-26-1442 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-26-6173     TCGA-26-6174 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-27-1830     TCGA-27-1831     TCGA-27-1832     TCGA-27-1833 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-27-1834     TCGA-27-1835     TCGA-27-1836     TCGA-27-1837 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-27-1838     TCGA-27-2518     TCGA-27-2519     TCGA-27-2521 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-27-2523     TCGA-27-2524     TCGA-27-2526     TCGA-27-2527 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-27-2528     TCGA-28-1747     TCGA-28-1753     TCGA-28-2499 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-28-2502     TCGA-28-2509     TCGA-28-2513     TCGA-28-2514 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-28-5204     TCGA-28-5207     TCGA-28-5208     TCGA-28-5209 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-28-5211     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5218     TCGA-28-5219     TCGA-28-5220 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-28-6450     TCGA-32-1970     TCGA-32-1977     TCGA-32-1979 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-32-1980     TCGA-32-1982     TCGA-32-1986     TCGA-32-1991 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-32-2491     TCGA-32-2494     TCGA-32-2495     TCGA-32-2615 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-32-2632     TCGA-32-2634     TCGA-32-2638     TCGA-32-4208 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-32-4209     TCGA-32-4210     TCGA-32-4211     TCGA-32-4213 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-32-4719     TCGA-32-5222     TCGA-41-2571     TCGA-41-2572 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-41-2573     TCGA-41-2575     TCGA-41-3392     TCGA-41-3393 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-41-3915     TCGA-41-4097     TCGA-41-5651     TCGA-41-6646 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-74-6573     TCGA-74-6575     TCGA-74-6577     TCGA-74-6578 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-74-6584     TCGA-76-4925     TCGA-76-4926     TCGA-76-4927 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-76-4928     TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-76-4934     TCGA-76-4935     TCGA-76-6191     TCGA-76-6192 
  "PTEN MUTATED"   "PTEN MUTATED"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-76-6193     TCGA-76-6280     TCGA-76-6282     TCGA-76-6285 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-76-6286     TCGA-76-6656     TCGA-76-6657     TCGA-76-6661 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-76-6662     TCGA-76-6663     TCGA-76-6664     TCGA-81-5910 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-81-5911     TCGA-87-5896 
  "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0240     TCGA-06-0241     TCGA-06-0644 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-0645     TCGA-06-0646     TCGA-06-0648     TCGA-06-0649 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-0650     TCGA-06-0686     TCGA-06-0743     TCGA-06-0744 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0745     TCGA-06-0747     TCGA-06-0749     TCGA-06-0750 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-06-0875     TCGA-06-0876     TCGA-06-0877     TCGA-06-0878 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-0879     TCGA-06-0881     TCGA-06-0882     TCGA-06-0939 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-06-1804     TCGA-06-1806     TCGA-06-2557     TCGA-06-2558 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-2559     TCGA-06-2561     TCGA-06-2562     TCGA-06-2563 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-2564     TCGA-06-2565     TCGA-06-2567     TCGA-06-2569 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-2570     TCGA-06-5408     TCGA-06-5410     TCGA-06-5411 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-5412     TCGA-06-5413     TCGA-06-5414     TCGA-06-5415 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-5417     TCGA-06-5418     TCGA-06-5856     TCGA-06-5858 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-06-5859     TCGA-06-6388     TCGA-06-6389     TCGA-06-6390 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-6391     TCGA-06-6693     TCGA-06-6694     TCGA-06-6695 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-6697     TCGA-06-6698     TCGA-06-6699     TCGA-06-6700 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-06-6701     TCGA-08-0386     TCGA-12-0615     TCGA-12-0616 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-12-0618     TCGA-12-0619     TCGA-12-0688     TCGA-12-0692 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-12-0821     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5299 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-12-5301     TCGA-14-0740     TCGA-14-0781     TCGA-14-0786 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-14-0787     TCGA-14-0789     TCGA-14-0790     TCGA-14-0813 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-14-0817     TCGA-14-0862     TCGA-14-0871     TCGA-14-1043 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-14-1395     TCGA-14-1450     TCGA-14-1456     TCGA-14-1823 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-14-1825     TCGA-14-1829     TCGA-14-2554     TCGA-14-3476 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-14-4157     TCGA-15-0742     TCGA-15-1444     TCGA-16-0846 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-16-0861     TCGA-16-1045     TCGA-19-1390     TCGA-19-1790 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-19-2619     TCGA-19-2620     TCGA-19-2623     TCGA-19-2624 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2629     TCGA-19-2631     TCGA-19-4068 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5958 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1439     TCGA-26-1442 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-26-6173     TCGA-26-6174 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-27-1830     TCGA-27-1831     TCGA-27-1832     TCGA-27-1833 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-27-1834     TCGA-27-1835     TCGA-27-1836     TCGA-27-1837 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-27-1838     TCGA-27-2518     TCGA-27-2519     TCGA-27-2521 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-27-2523     TCGA-27-2524     TCGA-27-2526     TCGA-27-2527 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-27-2528     TCGA-28-1747     TCGA-28-1753     TCGA-28-2499 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-28-2502     TCGA-28-2509     TCGA-28-2513     TCGA-28-2514 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-28-5204     TCGA-28-5207     TCGA-28-5208     TCGA-28-5209 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-28-5211     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5218     TCGA-28-5219     TCGA-28-5220 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-28-6450     TCGA-32-1970     TCGA-32-1977     TCGA-32-1979 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-32-1980     TCGA-32-1982     TCGA-32-1986     TCGA-32-1991 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-32-2491     TCGA-32-2494     TCGA-32-2495     TCGA-32-2615 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-32-2632     TCGA-32-2634     TCGA-32-2638     TCGA-32-4208 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-32-4209     TCGA-32-4210     TCGA-32-4211     TCGA-32-4213 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-32-4719     TCGA-32-5222     TCGA-41-2571     TCGA-41-2572 
"PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-41-2573     TCGA-41-2575     TCGA-41-3392     TCGA-41-3393 
  "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-41-3915     TCGA-41-4097     TCGA-41-5651     TCGA-41-6646 
  "PTEN MUTATED"   "PTEN MUTATED" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-74-6573     TCGA-74-6575     TCGA-74-6577     TCGA-74-6578 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-74-6584     TCGA-76-4925     TCGA-76-4926     TCGA-76-4927 
"PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED" 
    TCGA-76-4928     TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"PTEN WILD-TYPE" "PTEN WILD-TYPE"   "PTEN MUTATED" "PTEN WILD-TYPE" 
    TCGA-76-4934     TCGA-76-4935     TCGA-76-6191     TCGA-76-6192 
  "PTEN MUTATED"   "PTEN MUTATED"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-76-6193     TCGA-76-6280     TCGA-76-6282     TCGA-76-6285 
"PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" "PTEN WILD-TYPE" 
    TCGA-76-6286     TCGA-76-6656     TCGA-76-6657     TCGA-76-6661 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-76-6662     TCGA-76-6663     TCGA-76-6664     TCGA-81-5910 
  "PTEN MUTATED" "PTEN WILD-TYPE"   "PTEN MUTATED"   "PTEN MUTATED" 
    TCGA-81-5911     TCGA-87-5896 
  "PTEN MUTATED" "PTEN WILD-TYPE" 
[1] "hr=" "1.1"
D6V2, continuous
D6V3, binary
                cls
clus               0   1
  PTEN MUTATED    33  52
  PTEN WILD-TYPE  67 126
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED     33   52
  PTEN WILD-TYPE   67  126
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  FEMALE           33             67
  MALE             52            126
D6V4, continuous
                vv
clus             GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  PTEN MUTATED                               0                   2
  PTEN WILD-TYPE                             9                   2
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  PTEN MUTATED                                83
  PTEN WILD-TYPE                             182
D6V5, multiclass
                                 clus
vv                                PTEN MUTATED PTEN WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  TREATED PRIMARY GBM                        2              2
  UNTREATED PRIMARY (DE NOVO) GBM           83            182
D6V6, binary
                cls
clus               0   1
  PTEN MUTATED    55  30
  PTEN WILD-TYPE 131  62
[1] "tbl2"
                cls
clus             [,1] [,2]
  PTEN MUTATED     55   30
  PTEN WILD-TYPE  131   62
     clus
vv    PTEN MUTATED PTEN WILD-TYPE
  NO            55            131
  YES           30             62

Clustering(7) Variable = PIK3CA MUTATION ANALYSIS
D7V1, survival
                  sevent
clus2                0   1
  PIK3CA MUTATED     6  23
  PIK3CA WILD-TYPE  66 183
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              29              249 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              23              183 
$`PIK3CA MUTATED`
TCGA-02-0033 TCGA-02-0047 TCGA-02-2485 TCGA-06-0119 TCGA-06-0166 TCGA-06-0879 
        2.83        14.73        15.45         2.70         5.29        22.98 
TCGA-06-2570 TCGA-06-5413 TCGA-06-5417 TCGA-06-6391 TCGA-12-0821 TCGA-12-5301 
       31.50         8.81         5.10         1.48        10.62         2.04 
TCGA-15-0742 TCGA-19-1790 TCGA-19-5947 TCGA-19-5954 TCGA-26-5136 TCGA-27-1838 
        9.86         5.06         6.64         7.96         1.22        11.51 
TCGA-27-2527 TCGA-28-6450 TCGA-32-1979 TCGA-32-2491 TCGA-32-2495 TCGA-41-2572 
       14.40         5.42        19.50        12.23        15.02        13.35 
TCGA-41-5651 TCGA-74-6578 TCGA-76-4928 TCGA-76-6193 TCGA-76-6286 
       11.54        14.33         3.09         2.70        20.98 

$`PIK3CA WILD-TYPE`
TCGA-02-0003 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2486 TCGA-06-0122 
        4.73         2.50        12.92        15.32        16.21         0.26 
TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 
        4.04         0.10        22.72        32.52        10.52        18.74 
TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 
       23.08        10.75         0.20         9.21         2.20         2.33 
TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       46.59        11.80        12.79         8.65         3.19         5.46 
TCGA-06-0165 TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 
       10.65        11.41        19.04         3.12         0.23         2.20 
TCGA-06-0178 TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 
       53.98        40.37        73.84        28.47        14.93        18.31 
TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
        7.04         3.91         0.20        12.43        22.49         0.36 
TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 
       10.36        11.80        20.42        14.96        12.33         3.22 
TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 
        4.47         9.67         2.04        23.57         9.40        22.32 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 
       19.56         5.39         2.70         2.17         0.92        43.46 
TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
       46.19         5.65         7.17         5.85         5.42        20.94 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08         0.76         4.93         9.27 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 
        2.83        30.64         5.95         6.81         4.37         0.43 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5414 TCGA-06-5415 
       11.24         3.55         8.35         4.54         8.98         8.55 
TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        2.73         3.75         6.15         4.57         3.95         7.79 
TCGA-06-6390 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 
        5.39         0.49         7.36         8.32        12.85         4.77 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 
        1.55         4.77         4.96        15.72        14.01        14.43 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-1597 TCGA-12-3649 
        1.64        10.39        24.13         2.63        14.04        11.54 
TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-14-0740 
       10.95        34.52        11.74        13.12         3.22        11.97 
TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 
        0.95        23.05         2.24        11.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 
       40.96        17.85         7.63         7.17        17.49         0.39 
TCGA-14-4157 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
        3.42        50.53         3.91         4.31        29.03        25.38 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 
        9.67         4.87         7.53         0.16         4.08        16.47 
TCGA-19-2631 TCGA-19-4068 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 
        7.00         4.50        11.28         8.02        18.64         4.73 
TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 
        1.78         5.39         5.29         5.42        13.87        31.33 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5139 TCGA-26-6173 
        9.40        14.86         5.49         8.88         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.33         4.80        16.60         9.86        18.25        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 
       21.30        30.05        14.04        24.76        10.39        10.39 
TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
       16.08         7.59         2.86        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26         3.91 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
        9.04        15.58        14.53        11.77         9.80        14.20 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-32-1970 
        7.79        13.64         4.21         8.52        10.49        15.39 
TCGA-32-1977 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2494 
        0.10         1.18         4.67        12.69        16.93        20.78 
TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 
       15.95         8.84        22.78        21.17        21.14        19.86 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.72        12.59        19.86        10.85        10.62         0.85 
TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
        8.94         9.53         0.99         4.44        11.84         0.20 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6584 TCGA-76-4925 
        7.76         3.45        20.91         4.34         7.50         4.80 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 
        4.54        17.59         3.65         9.17        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
       10.78        16.70         3.29        11.38        17.06         8.35 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03         0.23         9.27         7.73         7.79 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.72        26.30 

  PIK3CA MUTATED PIK3CA WILD-TYPE 
            1.22             0.10 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
           31.50            73.84 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
            9.86             8.65 
[1] "1.2 - 31.5 (9.9)" "0.1 - 73.8 (8.7)"
      TCGA-02-0003       TCGA-02-0033       TCGA-02-0047       TCGA-02-0055 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-02-2470       TCGA-02-2483       TCGA-02-2485       TCGA-02-2486 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-06-0119       TCGA-06-0122       TCGA-06-0124       TCGA-06-0126 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0128       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0137       TCGA-06-0139       TCGA-06-0140       TCGA-06-0141 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0142       TCGA-06-0145       TCGA-06-0151       TCGA-06-0152 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0154       TCGA-06-0155       TCGA-06-0157       TCGA-06-0158 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0165       TCGA-06-0166       TCGA-06-0167       TCGA-06-0168 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0169       TCGA-06-0173       TCGA-06-0174       TCGA-06-0178 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0184       TCGA-06-0185       TCGA-06-0188       TCGA-06-0189 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0192       TCGA-06-0195       TCGA-06-0209       TCGA-06-0213 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0214       TCGA-06-0216       TCGA-06-0219       TCGA-06-0237 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0238       TCGA-06-0240       TCGA-06-0241       TCGA-06-0644 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0645       TCGA-06-0646       TCGA-06-0648       TCGA-06-0649 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0650       TCGA-06-0686       TCGA-06-0743       TCGA-06-0744 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0745       TCGA-06-0747       TCGA-06-0749       TCGA-06-0750 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0875       TCGA-06-0876       TCGA-06-0877       TCGA-06-0878 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0879       TCGA-06-0881       TCGA-06-0882       TCGA-06-0939 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-1804       TCGA-06-1806       TCGA-06-2557       TCGA-06-2558 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-2559       TCGA-06-2561       TCGA-06-2562       TCGA-06-2563 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-2564       TCGA-06-2565       TCGA-06-2567       TCGA-06-2569 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-2570       TCGA-06-5408       TCGA-06-5410       TCGA-06-5411 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-5412       TCGA-06-5413       TCGA-06-5414       TCGA-06-5415 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-5417       TCGA-06-5418       TCGA-06-5856       TCGA-06-5858 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-5859       TCGA-06-6388       TCGA-06-6389       TCGA-06-6390 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-6391       TCGA-06-6693       TCGA-06-6694       TCGA-06-6695 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-6697       TCGA-06-6698       TCGA-06-6699       TCGA-06-6700 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-6701       TCGA-08-0386       TCGA-12-0615       TCGA-12-0616 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-12-0618       TCGA-12-0619       TCGA-12-0688       TCGA-12-0692 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-12-0821       TCGA-12-1597       TCGA-12-3649       TCGA-12-3650 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-12-3652       TCGA-12-3653       TCGA-12-5295       TCGA-12-5299 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-12-5301       TCGA-14-0740       TCGA-14-0781       TCGA-14-0786 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-14-0787       TCGA-14-0789       TCGA-14-0790       TCGA-14-0813 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-14-0817       TCGA-14-0862       TCGA-14-0871       TCGA-14-1043 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-14-1395       TCGA-14-1450       TCGA-14-1456       TCGA-14-1823 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-14-1825       TCGA-14-1829       TCGA-14-2554       TCGA-14-3476 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-14-4157       TCGA-15-0742       TCGA-15-1444       TCGA-16-0846 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-16-0861       TCGA-16-1045       TCGA-19-1390       TCGA-19-1790 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-19-2619       TCGA-19-2620       TCGA-19-2623       TCGA-19-2624 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-19-2625       TCGA-19-2629       TCGA-19-2631       TCGA-19-4068 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-19-5947       TCGA-19-5950       TCGA-19-5951       TCGA-19-5952 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-19-5953       TCGA-19-5954       TCGA-19-5955       TCGA-19-5958 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-19-5959       TCGA-19-5960       TCGA-26-1439       TCGA-26-1442 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-26-5132       TCGA-26-5133       TCGA-26-5134       TCGA-26-5135 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-26-5136       TCGA-26-5139       TCGA-26-6173       TCGA-26-6174 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-27-1830       TCGA-27-1831       TCGA-27-1832       TCGA-27-1833 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-27-1834       TCGA-27-1835       TCGA-27-1836       TCGA-27-1837 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-27-1838       TCGA-27-2518       TCGA-27-2519       TCGA-27-2521 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-27-2523       TCGA-27-2524       TCGA-27-2526       TCGA-27-2527 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-27-2528       TCGA-28-1747       TCGA-28-1753       TCGA-28-2499 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-2502       TCGA-28-2509       TCGA-28-2513       TCGA-28-2514 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-5204       TCGA-28-5207       TCGA-28-5208       TCGA-28-5209 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-5211       TCGA-28-5213       TCGA-28-5214       TCGA-28-5215 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-5216       TCGA-28-5218       TCGA-28-5219       TCGA-28-5220 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-6450       TCGA-32-1970       TCGA-32-1977       TCGA-32-1979 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-32-1980       TCGA-32-1982       TCGA-32-1986       TCGA-32-1991 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-32-2491       TCGA-32-2494       TCGA-32-2495       TCGA-32-2615 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-32-2632       TCGA-32-2634       TCGA-32-2638       TCGA-32-4208 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-32-4209       TCGA-32-4210       TCGA-32-4211       TCGA-32-4213 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-32-4719       TCGA-32-5222       TCGA-41-2571       TCGA-41-2572 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-41-2573       TCGA-41-2575       TCGA-41-3392       TCGA-41-3393 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-41-3915       TCGA-41-4097       TCGA-41-5651       TCGA-41-6646 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-74-6573       TCGA-74-6575       TCGA-74-6577       TCGA-74-6578 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-74-6584       TCGA-76-4925       TCGA-76-4926       TCGA-76-4927 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-4928       TCGA-76-4929       TCGA-76-4931       TCGA-76-4932 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-4934       TCGA-76-4935       TCGA-76-6191       TCGA-76-6192 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-6193       TCGA-76-6280       TCGA-76-6282       TCGA-76-6285 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-6286       TCGA-76-6656       TCGA-76-6657       TCGA-76-6661 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-6662       TCGA-76-6663       TCGA-76-6664       TCGA-81-5910 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-81-5911       TCGA-87-5896 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-02-0003       TCGA-02-0033       TCGA-02-0047       TCGA-02-0055 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-02-2470       TCGA-02-2483       TCGA-02-2485       TCGA-02-2486 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-06-0119       TCGA-06-0122       TCGA-06-0124       TCGA-06-0126 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0128       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0137       TCGA-06-0139       TCGA-06-0140       TCGA-06-0141 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0142       TCGA-06-0145       TCGA-06-0151       TCGA-06-0152 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0154       TCGA-06-0155       TCGA-06-0157       TCGA-06-0158 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0165       TCGA-06-0166       TCGA-06-0167       TCGA-06-0168 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0169       TCGA-06-0173       TCGA-06-0174       TCGA-06-0178 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0184       TCGA-06-0185       TCGA-06-0188       TCGA-06-0189 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0192       TCGA-06-0195       TCGA-06-0209       TCGA-06-0213 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0214       TCGA-06-0216       TCGA-06-0219       TCGA-06-0237 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0238       TCGA-06-0240       TCGA-06-0241       TCGA-06-0644 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0645       TCGA-06-0646       TCGA-06-0648       TCGA-06-0649 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0650       TCGA-06-0686       TCGA-06-0743       TCGA-06-0744 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0745       TCGA-06-0747       TCGA-06-0749       TCGA-06-0750 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0875       TCGA-06-0876       TCGA-06-0877       TCGA-06-0878 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0879       TCGA-06-0881       TCGA-06-0882       TCGA-06-0939 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-1804       TCGA-06-1806       TCGA-06-2557       TCGA-06-2558 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-2559       TCGA-06-2561       TCGA-06-2562       TCGA-06-2563 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-2564       TCGA-06-2565       TCGA-06-2567       TCGA-06-2569 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-2570       TCGA-06-5408       TCGA-06-5410       TCGA-06-5411 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-5412       TCGA-06-5413       TCGA-06-5414       TCGA-06-5415 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-5417       TCGA-06-5418       TCGA-06-5856       TCGA-06-5858 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-5859       TCGA-06-6388       TCGA-06-6389       TCGA-06-6390 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-6391       TCGA-06-6693       TCGA-06-6694       TCGA-06-6695 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-6697       TCGA-06-6698       TCGA-06-6699       TCGA-06-6700 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-6701       TCGA-08-0386       TCGA-12-0615       TCGA-12-0616 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-12-0618       TCGA-12-0619       TCGA-12-0688       TCGA-12-0692 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-12-0821       TCGA-12-1597       TCGA-12-3649       TCGA-12-3650 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-12-3652       TCGA-12-3653       TCGA-12-5295       TCGA-12-5299 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-12-5301       TCGA-14-0740       TCGA-14-0781       TCGA-14-0786 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-14-0787       TCGA-14-0789       TCGA-14-0790       TCGA-14-0813 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-14-0817       TCGA-14-0862       TCGA-14-0871       TCGA-14-1043 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-14-1395       TCGA-14-1450       TCGA-14-1456       TCGA-14-1823 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-14-1825       TCGA-14-1829       TCGA-14-2554       TCGA-14-3476 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-14-4157       TCGA-15-0742       TCGA-15-1444       TCGA-16-0846 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-16-0861       TCGA-16-1045       TCGA-19-1390       TCGA-19-1790 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-19-2619       TCGA-19-2620       TCGA-19-2623       TCGA-19-2624 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-19-2625       TCGA-19-2629       TCGA-19-2631       TCGA-19-4068 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-19-5947       TCGA-19-5950       TCGA-19-5951       TCGA-19-5952 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-19-5953       TCGA-19-5954       TCGA-19-5955       TCGA-19-5958 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-19-5959       TCGA-19-5960       TCGA-26-1439       TCGA-26-1442 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-26-5132       TCGA-26-5133       TCGA-26-5134       TCGA-26-5135 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-26-5136       TCGA-26-5139       TCGA-26-6173       TCGA-26-6174 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-27-1830       TCGA-27-1831       TCGA-27-1832       TCGA-27-1833 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-27-1834       TCGA-27-1835       TCGA-27-1836       TCGA-27-1837 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-27-1838       TCGA-27-2518       TCGA-27-2519       TCGA-27-2521 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-27-2523       TCGA-27-2524       TCGA-27-2526       TCGA-27-2527 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-27-2528       TCGA-28-1747       TCGA-28-1753       TCGA-28-2499 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-2502       TCGA-28-2509       TCGA-28-2513       TCGA-28-2514 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-5204       TCGA-28-5207       TCGA-28-5208       TCGA-28-5209 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-5211       TCGA-28-5213       TCGA-28-5214       TCGA-28-5215 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-5216       TCGA-28-5218       TCGA-28-5219       TCGA-28-5220 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-6450       TCGA-32-1970       TCGA-32-1977       TCGA-32-1979 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-32-1980       TCGA-32-1982       TCGA-32-1986       TCGA-32-1991 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-32-2491       TCGA-32-2494       TCGA-32-2495       TCGA-32-2615 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-32-2632       TCGA-32-2634       TCGA-32-2638       TCGA-32-4208 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-32-4209       TCGA-32-4210       TCGA-32-4211       TCGA-32-4213 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-32-4719       TCGA-32-5222       TCGA-41-2571       TCGA-41-2572 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-41-2573       TCGA-41-2575       TCGA-41-3392       TCGA-41-3393 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-41-3915       TCGA-41-4097       TCGA-41-5651       TCGA-41-6646 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-74-6573       TCGA-74-6575       TCGA-74-6577       TCGA-74-6578 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-74-6584       TCGA-76-4925       TCGA-76-4926       TCGA-76-4927 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-4928       TCGA-76-4929       TCGA-76-4931       TCGA-76-4932 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-4934       TCGA-76-4935       TCGA-76-6191       TCGA-76-6192 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-6193       TCGA-76-6280       TCGA-76-6282       TCGA-76-6285 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-6286       TCGA-76-6656       TCGA-76-6657       TCGA-76-6661 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-6662       TCGA-76-6663       TCGA-76-6664       TCGA-81-5910 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-81-5911       TCGA-87-5896 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-02-0003       TCGA-02-0033       TCGA-02-0047       TCGA-02-0055 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-02-2470       TCGA-02-2483       TCGA-02-2485       TCGA-02-2486 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-06-0119       TCGA-06-0122       TCGA-06-0124       TCGA-06-0126 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0128       TCGA-06-0129       TCGA-06-0130       TCGA-06-0132 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0137       TCGA-06-0139       TCGA-06-0140       TCGA-06-0141 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0142       TCGA-06-0145       TCGA-06-0151       TCGA-06-0152 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0154       TCGA-06-0155       TCGA-06-0157       TCGA-06-0158 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0165       TCGA-06-0166       TCGA-06-0167       TCGA-06-0168 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0169       TCGA-06-0173       TCGA-06-0174       TCGA-06-0178 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0184       TCGA-06-0185       TCGA-06-0188       TCGA-06-0189 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0192       TCGA-06-0195       TCGA-06-0209       TCGA-06-0213 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0214       TCGA-06-0216       TCGA-06-0219       TCGA-06-0237 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0238       TCGA-06-0240       TCGA-06-0241       TCGA-06-0644 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0645       TCGA-06-0646       TCGA-06-0648       TCGA-06-0649 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0650       TCGA-06-0686       TCGA-06-0743       TCGA-06-0744 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0745       TCGA-06-0747       TCGA-06-0749       TCGA-06-0750 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0875       TCGA-06-0876       TCGA-06-0877       TCGA-06-0878 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-0879       TCGA-06-0881       TCGA-06-0882       TCGA-06-0939 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-1804       TCGA-06-1806       TCGA-06-2557       TCGA-06-2558 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-2559       TCGA-06-2561       TCGA-06-2562       TCGA-06-2563 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-2564       TCGA-06-2565       TCGA-06-2567       TCGA-06-2569 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-2570       TCGA-06-5408       TCGA-06-5410       TCGA-06-5411 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-5412       TCGA-06-5413       TCGA-06-5414       TCGA-06-5415 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-5417       TCGA-06-5418       TCGA-06-5856       TCGA-06-5858 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-5859       TCGA-06-6388       TCGA-06-6389       TCGA-06-6390 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-6391       TCGA-06-6693       TCGA-06-6694       TCGA-06-6695 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-6697       TCGA-06-6698       TCGA-06-6699       TCGA-06-6700 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-06-6701       TCGA-08-0386       TCGA-12-0615       TCGA-12-0616 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-12-0618       TCGA-12-0619       TCGA-12-0688       TCGA-12-0692 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-12-0821       TCGA-12-1597       TCGA-12-3649       TCGA-12-3650 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-12-3652       TCGA-12-3653       TCGA-12-5295       TCGA-12-5299 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-12-5301       TCGA-14-0740       TCGA-14-0781       TCGA-14-0786 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-14-0787       TCGA-14-0789       TCGA-14-0790       TCGA-14-0813 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-14-0817       TCGA-14-0862       TCGA-14-0871       TCGA-14-1043 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-14-1395       TCGA-14-1450       TCGA-14-1456       TCGA-14-1823 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-14-1825       TCGA-14-1829       TCGA-14-2554       TCGA-14-3476 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-14-4157       TCGA-15-0742       TCGA-15-1444       TCGA-16-0846 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-16-0861       TCGA-16-1045       TCGA-19-1390       TCGA-19-1790 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-19-2619       TCGA-19-2620       TCGA-19-2623       TCGA-19-2624 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-19-2625       TCGA-19-2629       TCGA-19-2631       TCGA-19-4068 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-19-5947       TCGA-19-5950       TCGA-19-5951       TCGA-19-5952 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-19-5953       TCGA-19-5954       TCGA-19-5955       TCGA-19-5958 
"PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-19-5959       TCGA-19-5960       TCGA-26-1439       TCGA-26-1442 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-26-5132       TCGA-26-5133       TCGA-26-5134       TCGA-26-5135 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-26-5136       TCGA-26-5139       TCGA-26-6173       TCGA-26-6174 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-27-1830       TCGA-27-1831       TCGA-27-1832       TCGA-27-1833 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-27-1834       TCGA-27-1835       TCGA-27-1836       TCGA-27-1837 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-27-1838       TCGA-27-2518       TCGA-27-2519       TCGA-27-2521 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-27-2523       TCGA-27-2524       TCGA-27-2526       TCGA-27-2527 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-27-2528       TCGA-28-1747       TCGA-28-1753       TCGA-28-2499 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-2502       TCGA-28-2509       TCGA-28-2513       TCGA-28-2514 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-5204       TCGA-28-5207       TCGA-28-5208       TCGA-28-5209 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-5211       TCGA-28-5213       TCGA-28-5214       TCGA-28-5215 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-5216       TCGA-28-5218       TCGA-28-5219       TCGA-28-5220 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-28-6450       TCGA-32-1970       TCGA-32-1977       TCGA-32-1979 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-32-1980       TCGA-32-1982       TCGA-32-1986       TCGA-32-1991 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-32-2491       TCGA-32-2494       TCGA-32-2495       TCGA-32-2615 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-32-2632       TCGA-32-2634       TCGA-32-2638       TCGA-32-4208 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-32-4209       TCGA-32-4210       TCGA-32-4211       TCGA-32-4213 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-32-4719       TCGA-32-5222       TCGA-41-2571       TCGA-41-2572 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-41-2573       TCGA-41-2575       TCGA-41-3392       TCGA-41-3393 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-41-3915       TCGA-41-4097       TCGA-41-5651       TCGA-41-6646 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" "PIK3CA WILD-TYPE" 
      TCGA-74-6573       TCGA-74-6575       TCGA-74-6577       TCGA-74-6578 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE"   "PIK3CA MUTATED" 
      TCGA-74-6584       TCGA-76-4925       TCGA-76-4926       TCGA-76-4927 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-4928       TCGA-76-4929       TCGA-76-4931       TCGA-76-4932 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-4934       TCGA-76-4935       TCGA-76-6191       TCGA-76-6192 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-6193       TCGA-76-6280       TCGA-76-6282       TCGA-76-6285 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-6286       TCGA-76-6656       TCGA-76-6657       TCGA-76-6661 
  "PIK3CA MUTATED" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-76-6662       TCGA-76-6663       TCGA-76-6664       TCGA-81-5910 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
      TCGA-81-5911       TCGA-87-5896 
"PIK3CA WILD-TYPE" "PIK3CA WILD-TYPE" 
[1] "hr=" "1.2"
D7V2, continuous
D7V3, binary
                  cls
clus                 0   1
  PIK3CA MUTATED    12  17
  PIK3CA WILD-TYPE  88 161
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED     12   17
  PIK3CA WILD-TYPE   88  161
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  FEMALE             12               88
  MALE               17              161
D7V4, continuous
                  vv
clus               GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  PIK3CA MUTATED                               1                   1
  PIK3CA WILD-TYPE                             8                   3
                  vv
clus               UNTREATED PRIMARY (DE NOVO) GBM
  PIK3CA MUTATED                                27
  PIK3CA WILD-TYPE                             238
D7V5, multiclass
                                 clus
vv                                PIK3CA MUTATED PIK3CA WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)                1                8
  TREATED PRIMARY GBM                          1                3
  UNTREATED PRIMARY (DE NOVO) GBM             27              238
D7V6, binary
                  cls
clus                 0   1
  PIK3CA MUTATED    20   9
  PIK3CA WILD-TYPE 166  83
[1] "tbl2"
                  cls
clus               [,1] [,2]
  PIK3CA MUTATED     20    9
  PIK3CA WILD-TYPE  166   83
     clus
vv    PIK3CA MUTATED PIK3CA WILD-TYPE
  NO              20              166
  YES              9               83

Clustering(8) Variable = RB1 MUTATION ANALYSIS
D8V1, survival
               sevent
clus2             0   1
  RB1 MUTATED     9  14
  RB1 WILD-TYPE  63 192
  RB1 MUTATED RB1 WILD-TYPE 
           23           255 
  RB1 MUTATED RB1 WILD-TYPE 
           14           192 
$`RB1 MUTATED`
TCGA-02-0033 TCGA-06-0130 TCGA-06-0140 TCGA-06-0184 TCGA-06-0188 TCGA-06-0195 
        2.83        10.52         0.20        40.37        28.47         7.04 
TCGA-06-0213 TCGA-06-0939 TCGA-06-5858 TCGA-06-6698 TCGA-19-2623 TCGA-19-2625 
        0.20        20.94         6.15         4.77         7.53         4.08 
TCGA-26-5132 TCGA-27-2524 TCGA-32-1970 TCGA-32-2491 TCGA-32-2632 TCGA-32-2634 
        9.40         7.59        15.39        12.23         8.84        22.78 
TCGA-32-4213 TCGA-76-6286 TCGA-76-6662 TCGA-76-6663 TCGA-81-5911 
       19.86        20.98         9.27         7.73        17.72 

$`RB1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
        4.73        14.73         2.50        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 
       16.21         2.70         0.26         4.04         0.10        22.72 
TCGA-06-0129 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0141 TCGA-06-0142 
       32.52        18.74        23.08        10.75         9.21         2.20 
TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        2.33        46.59        11.80        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 
        5.46        10.65         5.29        11.41        19.04         3.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0185 TCGA-06-0189 TCGA-06-0192 
        0.23         2.20        53.98        73.84        14.93        18.31 
TCGA-06-0209 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0238 
        3.91        12.43        22.49         0.36        10.36        11.80 
TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 
       20.42        14.96        12.33         3.22         4.47         9.67 
TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
        2.04        23.57         9.40        22.32        19.56         5.39 
TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        2.70         2.17         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-1804 TCGA-06-1806 
        7.17        22.98         5.85         5.42        13.61        15.32 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
        1.08         0.76         4.93         9.27         2.83        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        5.95         6.81         4.37         0.43        31.50        11.24 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 
        5.10         2.73         3.75         4.57         3.95         7.79 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.39         1.48         0.49         7.36         8.32        12.85 
TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 
        1.55         4.77         4.96        15.72        14.01        14.43 
TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 
        1.64        10.39        24.13         2.63        10.62        14.04 
TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       11.54        10.95        34.52        11.74        13.12         3.22 
TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
        2.04        11.97         0.95        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 
       13.78         1.35         5.39         2.89        28.93         0.79 
TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 
        1.38        58.78        40.96        17.85         7.63         7.17 
TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 
       17.49         0.39         3.42         9.86        50.53         3.91 
TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 
        4.31        29.03        25.38         5.06         9.67         4.87 
TCGA-19-2624 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 
        0.16        16.47         7.00         4.50         6.64        11.28 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 
        8.02        18.64         4.73         7.96         1.78         5.39 
TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 
        5.29         5.42        13.87        31.33        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88         1.22         1.58         7.92         2.33         4.80 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        18.25        33.14        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        10.39        10.39        16.08 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        2.86        14.40        15.78         2.53         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26         3.91         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       15.58        14.53        11.77         9.80        14.20         7.79 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1977 
       13.64         4.21         8.52        10.49         5.42         0.10 
TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2494 
       19.50         1.18         4.67        12.69        16.93        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 
       15.02        15.95        21.17        21.14        19.86         3.72 
TCGA-32-4211 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       12.59        10.85        10.62         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
        7.76         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 
       47.93         2.53        10.78        16.70         3.29         2.70 
TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       11.38        17.06         8.35         4.83         5.03         0.23 
TCGA-76-6664 TCGA-81-5910 TCGA-87-5896 
        7.79         1.61        26.30 

  RB1 MUTATED RB1 WILD-TYPE 
          0.2           0.1 
  RB1 MUTATED RB1 WILD-TYPE 
        40.37         73.84 
  RB1 MUTATED RB1 WILD-TYPE 
         9.27          8.65 
[1] "0.2 - 40.4 (9.3)" "0.1 - 73.8 (8.7)"
   TCGA-02-0003    TCGA-02-0033    TCGA-02-0047    TCGA-02-0055    TCGA-02-2470 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-02-2483    TCGA-02-2485    TCGA-02-2486    TCGA-06-0119    TCGA-06-0122 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0124    TCGA-06-0126    TCGA-06-0128    TCGA-06-0129    TCGA-06-0130 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-06-0132    TCGA-06-0137    TCGA-06-0139    TCGA-06-0140    TCGA-06-0141 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-06-0142    TCGA-06-0145    TCGA-06-0151    TCGA-06-0152    TCGA-06-0154 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0155    TCGA-06-0157    TCGA-06-0158    TCGA-06-0165    TCGA-06-0166 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0167    TCGA-06-0168    TCGA-06-0169    TCGA-06-0173    TCGA-06-0174 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0178    TCGA-06-0184    TCGA-06-0185    TCGA-06-0188    TCGA-06-0189 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-06-0192    TCGA-06-0195    TCGA-06-0209    TCGA-06-0213    TCGA-06-0214 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-06-0216    TCGA-06-0219    TCGA-06-0237    TCGA-06-0238    TCGA-06-0240 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0241    TCGA-06-0644    TCGA-06-0645    TCGA-06-0646    TCGA-06-0648 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0649    TCGA-06-0650    TCGA-06-0686    TCGA-06-0743    TCGA-06-0744 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0745    TCGA-06-0747    TCGA-06-0749    TCGA-06-0750    TCGA-06-0875 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0876    TCGA-06-0877    TCGA-06-0878    TCGA-06-0879    TCGA-06-0881 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0882    TCGA-06-0939    TCGA-06-1804    TCGA-06-1806    TCGA-06-2557 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-2558    TCGA-06-2559    TCGA-06-2561    TCGA-06-2562    TCGA-06-2563 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-2564    TCGA-06-2565    TCGA-06-2567    TCGA-06-2569    TCGA-06-2570 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-5408    TCGA-06-5410    TCGA-06-5411    TCGA-06-5412    TCGA-06-5413 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-5414    TCGA-06-5415    TCGA-06-5417    TCGA-06-5418    TCGA-06-5856 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-5858    TCGA-06-5859    TCGA-06-6388    TCGA-06-6389    TCGA-06-6390 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-6391    TCGA-06-6693    TCGA-06-6694    TCGA-06-6695    TCGA-06-6697 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-6698    TCGA-06-6699    TCGA-06-6700    TCGA-06-6701    TCGA-08-0386 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-12-0615    TCGA-12-0616    TCGA-12-0618    TCGA-12-0619    TCGA-12-0688 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-12-0692    TCGA-12-0821    TCGA-12-1597    TCGA-12-3649    TCGA-12-3650 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-12-5299    TCGA-12-5301 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-14-0740    TCGA-14-0781    TCGA-14-0786    TCGA-14-0787    TCGA-14-0789 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-14-0790    TCGA-14-0813    TCGA-14-0817    TCGA-14-0862    TCGA-14-0871 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-14-1043    TCGA-14-1395    TCGA-14-1450    TCGA-14-1456    TCGA-14-1823 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-14-1825    TCGA-14-1829    TCGA-14-2554    TCGA-14-3476    TCGA-14-4157 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-15-0742    TCGA-15-1444    TCGA-16-0846    TCGA-16-0861    TCGA-16-1045 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-19-1390    TCGA-19-1790    TCGA-19-2619    TCGA-19-2620    TCGA-19-2623 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-19-2624    TCGA-19-2625    TCGA-19-2629    TCGA-19-2631    TCGA-19-4068 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-19-5947    TCGA-19-5950    TCGA-19-5951    TCGA-19-5952    TCGA-19-5953 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-19-5954    TCGA-19-5955    TCGA-19-5958    TCGA-19-5959    TCGA-19-5960 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-26-1439    TCGA-26-1442    TCGA-26-5132    TCGA-26-5133    TCGA-26-5134 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-26-5135    TCGA-26-5136    TCGA-26-5139    TCGA-26-6173    TCGA-26-6174 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-27-1830    TCGA-27-1831    TCGA-27-1832    TCGA-27-1833    TCGA-27-1834 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-27-1835    TCGA-27-1836    TCGA-27-1837    TCGA-27-1838    TCGA-27-2518 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-27-2519    TCGA-27-2521    TCGA-27-2523    TCGA-27-2524    TCGA-27-2526 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-27-2527    TCGA-27-2528    TCGA-28-1747    TCGA-28-1753    TCGA-28-2499 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-28-2502    TCGA-28-2509    TCGA-28-2513    TCGA-28-2514    TCGA-28-5204 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-28-5207    TCGA-28-5208    TCGA-28-5209    TCGA-28-5211    TCGA-28-5213 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-28-5214    TCGA-28-5215    TCGA-28-5216    TCGA-28-5218    TCGA-28-5219 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-28-5220    TCGA-28-6450    TCGA-32-1970    TCGA-32-1977    TCGA-32-1979 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-32-1980    TCGA-32-1982    TCGA-32-1986    TCGA-32-1991    TCGA-32-2491 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-32-2494    TCGA-32-2495    TCGA-32-2615    TCGA-32-2632    TCGA-32-2634 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED"   "RB1 MUTATED" 
   TCGA-32-2638    TCGA-32-4208    TCGA-32-4209    TCGA-32-4210    TCGA-32-4211 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-32-4213    TCGA-32-4719    TCGA-32-5222    TCGA-41-2571    TCGA-41-2572 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-41-2573    TCGA-41-2575    TCGA-41-3392    TCGA-41-3393    TCGA-41-3915 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-41-4097    TCGA-41-5651    TCGA-41-6646    TCGA-74-6573    TCGA-74-6575 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-74-6577    TCGA-74-6578    TCGA-74-6584    TCGA-76-4925    TCGA-76-4926 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-76-4927    TCGA-76-4928    TCGA-76-4929    TCGA-76-4931    TCGA-76-4932 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-76-4934    TCGA-76-4935    TCGA-76-6191    TCGA-76-6192    TCGA-76-6193 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-76-6280    TCGA-76-6282    TCGA-76-6285    TCGA-76-6286    TCGA-76-6656 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-76-6657    TCGA-76-6661    TCGA-76-6662    TCGA-76-6663    TCGA-76-6664 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-81-5910    TCGA-81-5911    TCGA-87-5896 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-02-0003    TCGA-02-0033    TCGA-02-0047    TCGA-02-0055    TCGA-02-2470 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-02-2483    TCGA-02-2485    TCGA-02-2486    TCGA-06-0119    TCGA-06-0122 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0124    TCGA-06-0126    TCGA-06-0128    TCGA-06-0129    TCGA-06-0130 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-06-0132    TCGA-06-0137    TCGA-06-0139    TCGA-06-0140    TCGA-06-0141 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-06-0142    TCGA-06-0145    TCGA-06-0151    TCGA-06-0152    TCGA-06-0154 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0155    TCGA-06-0157    TCGA-06-0158    TCGA-06-0165    TCGA-06-0166 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0167    TCGA-06-0168    TCGA-06-0169    TCGA-06-0173    TCGA-06-0174 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0178    TCGA-06-0184    TCGA-06-0185    TCGA-06-0188    TCGA-06-0189 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-06-0192    TCGA-06-0195    TCGA-06-0209    TCGA-06-0213    TCGA-06-0214 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-06-0216    TCGA-06-0219    TCGA-06-0237    TCGA-06-0238    TCGA-06-0240 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0241    TCGA-06-0644    TCGA-06-0645    TCGA-06-0646    TCGA-06-0648 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0649    TCGA-06-0650    TCGA-06-0686    TCGA-06-0743    TCGA-06-0744 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0745    TCGA-06-0747    TCGA-06-0749    TCGA-06-0750    TCGA-06-0875 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0876    TCGA-06-0877    TCGA-06-0878    TCGA-06-0879    TCGA-06-0881 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0882    TCGA-06-0939    TCGA-06-1804    TCGA-06-1806    TCGA-06-2557 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-2558    TCGA-06-2559    TCGA-06-2561    TCGA-06-2562    TCGA-06-2563 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-2564    TCGA-06-2565    TCGA-06-2567    TCGA-06-2569    TCGA-06-2570 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-5408    TCGA-06-5410    TCGA-06-5411    TCGA-06-5412    TCGA-06-5413 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-5414    TCGA-06-5415    TCGA-06-5417    TCGA-06-5418    TCGA-06-5856 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-5858    TCGA-06-5859    TCGA-06-6388    TCGA-06-6389    TCGA-06-6390 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-6391    TCGA-06-6693    TCGA-06-6694    TCGA-06-6695    TCGA-06-6697 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-6698    TCGA-06-6699    TCGA-06-6700    TCGA-06-6701    TCGA-08-0386 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-12-0615    TCGA-12-0616    TCGA-12-0618    TCGA-12-0619    TCGA-12-0688 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-12-0692    TCGA-12-0821    TCGA-12-1597    TCGA-12-3649    TCGA-12-3650 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-12-5299    TCGA-12-5301 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-14-0740    TCGA-14-0781    TCGA-14-0786    TCGA-14-0787    TCGA-14-0789 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-14-0790    TCGA-14-0813    TCGA-14-0817    TCGA-14-0862    TCGA-14-0871 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-14-1043    TCGA-14-1395    TCGA-14-1450    TCGA-14-1456    TCGA-14-1823 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-14-1825    TCGA-14-1829    TCGA-14-2554    TCGA-14-3476    TCGA-14-4157 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-15-0742    TCGA-15-1444    TCGA-16-0846    TCGA-16-0861    TCGA-16-1045 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-19-1390    TCGA-19-1790    TCGA-19-2619    TCGA-19-2620    TCGA-19-2623 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-19-2624    TCGA-19-2625    TCGA-19-2629    TCGA-19-2631    TCGA-19-4068 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-19-5947    TCGA-19-5950    TCGA-19-5951    TCGA-19-5952    TCGA-19-5953 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-19-5954    TCGA-19-5955    TCGA-19-5958    TCGA-19-5959    TCGA-19-5960 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-26-1439    TCGA-26-1442    TCGA-26-5132    TCGA-26-5133    TCGA-26-5134 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-26-5135    TCGA-26-5136    TCGA-26-5139    TCGA-26-6173    TCGA-26-6174 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-27-1830    TCGA-27-1831    TCGA-27-1832    TCGA-27-1833    TCGA-27-1834 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-27-1835    TCGA-27-1836    TCGA-27-1837    TCGA-27-1838    TCGA-27-2518 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-27-2519    TCGA-27-2521    TCGA-27-2523    TCGA-27-2524    TCGA-27-2526 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-27-2527    TCGA-27-2528    TCGA-28-1747    TCGA-28-1753    TCGA-28-2499 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-28-2502    TCGA-28-2509    TCGA-28-2513    TCGA-28-2514    TCGA-28-5204 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-28-5207    TCGA-28-5208    TCGA-28-5209    TCGA-28-5211    TCGA-28-5213 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-28-5214    TCGA-28-5215    TCGA-28-5216    TCGA-28-5218    TCGA-28-5219 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-28-5220    TCGA-28-6450    TCGA-32-1970    TCGA-32-1977    TCGA-32-1979 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-32-1980    TCGA-32-1982    TCGA-32-1986    TCGA-32-1991    TCGA-32-2491 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-32-2494    TCGA-32-2495    TCGA-32-2615    TCGA-32-2632    TCGA-32-2634 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED"   "RB1 MUTATED" 
   TCGA-32-2638    TCGA-32-4208    TCGA-32-4209    TCGA-32-4210    TCGA-32-4211 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-32-4213    TCGA-32-4719    TCGA-32-5222    TCGA-41-2571    TCGA-41-2572 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-41-2573    TCGA-41-2575    TCGA-41-3392    TCGA-41-3393    TCGA-41-3915 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-41-4097    TCGA-41-5651    TCGA-41-6646    TCGA-74-6573    TCGA-74-6575 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-74-6577    TCGA-74-6578    TCGA-74-6584    TCGA-76-4925    TCGA-76-4926 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-76-4927    TCGA-76-4928    TCGA-76-4929    TCGA-76-4931    TCGA-76-4932 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-76-4934    TCGA-76-4935    TCGA-76-6191    TCGA-76-6192    TCGA-76-6193 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-76-6280    TCGA-76-6282    TCGA-76-6285    TCGA-76-6286    TCGA-76-6656 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-76-6657    TCGA-76-6661    TCGA-76-6662    TCGA-76-6663    TCGA-76-6664 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-81-5910    TCGA-81-5911    TCGA-87-5896 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-02-0003    TCGA-02-0033    TCGA-02-0047    TCGA-02-0055    TCGA-02-2470 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-02-2483    TCGA-02-2485    TCGA-02-2486    TCGA-06-0119    TCGA-06-0122 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0124    TCGA-06-0126    TCGA-06-0128    TCGA-06-0129    TCGA-06-0130 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-06-0132    TCGA-06-0137    TCGA-06-0139    TCGA-06-0140    TCGA-06-0141 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-06-0142    TCGA-06-0145    TCGA-06-0151    TCGA-06-0152    TCGA-06-0154 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0155    TCGA-06-0157    TCGA-06-0158    TCGA-06-0165    TCGA-06-0166 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0167    TCGA-06-0168    TCGA-06-0169    TCGA-06-0173    TCGA-06-0174 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0178    TCGA-06-0184    TCGA-06-0185    TCGA-06-0188    TCGA-06-0189 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-06-0192    TCGA-06-0195    TCGA-06-0209    TCGA-06-0213    TCGA-06-0214 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-06-0216    TCGA-06-0219    TCGA-06-0237    TCGA-06-0238    TCGA-06-0240 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0241    TCGA-06-0644    TCGA-06-0645    TCGA-06-0646    TCGA-06-0648 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0649    TCGA-06-0650    TCGA-06-0686    TCGA-06-0743    TCGA-06-0744 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0745    TCGA-06-0747    TCGA-06-0749    TCGA-06-0750    TCGA-06-0875 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0876    TCGA-06-0877    TCGA-06-0878    TCGA-06-0879    TCGA-06-0881 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-0882    TCGA-06-0939    TCGA-06-1804    TCGA-06-1806    TCGA-06-2557 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-2558    TCGA-06-2559    TCGA-06-2561    TCGA-06-2562    TCGA-06-2563 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-2564    TCGA-06-2565    TCGA-06-2567    TCGA-06-2569    TCGA-06-2570 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-5408    TCGA-06-5410    TCGA-06-5411    TCGA-06-5412    TCGA-06-5413 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-5414    TCGA-06-5415    TCGA-06-5417    TCGA-06-5418    TCGA-06-5856 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-5858    TCGA-06-5859    TCGA-06-6388    TCGA-06-6389    TCGA-06-6390 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-6391    TCGA-06-6693    TCGA-06-6694    TCGA-06-6695    TCGA-06-6697 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-06-6698    TCGA-06-6699    TCGA-06-6700    TCGA-06-6701    TCGA-08-0386 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-12-0615    TCGA-12-0616    TCGA-12-0618    TCGA-12-0619    TCGA-12-0688 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-12-0692    TCGA-12-0821    TCGA-12-1597    TCGA-12-3649    TCGA-12-3650 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-12-5299    TCGA-12-5301 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-14-0740    TCGA-14-0781    TCGA-14-0786    TCGA-14-0787    TCGA-14-0789 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-14-0790    TCGA-14-0813    TCGA-14-0817    TCGA-14-0862    TCGA-14-0871 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-14-1043    TCGA-14-1395    TCGA-14-1450    TCGA-14-1456    TCGA-14-1823 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-14-1825    TCGA-14-1829    TCGA-14-2554    TCGA-14-3476    TCGA-14-4157 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-15-0742    TCGA-15-1444    TCGA-16-0846    TCGA-16-0861    TCGA-16-1045 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-19-1390    TCGA-19-1790    TCGA-19-2619    TCGA-19-2620    TCGA-19-2623 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-19-2624    TCGA-19-2625    TCGA-19-2629    TCGA-19-2631    TCGA-19-4068 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-19-5947    TCGA-19-5950    TCGA-19-5951    TCGA-19-5952    TCGA-19-5953 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-19-5954    TCGA-19-5955    TCGA-19-5958    TCGA-19-5959    TCGA-19-5960 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-26-1439    TCGA-26-1442    TCGA-26-5132    TCGA-26-5133    TCGA-26-5134 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-26-5135    TCGA-26-5136    TCGA-26-5139    TCGA-26-6173    TCGA-26-6174 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-27-1830    TCGA-27-1831    TCGA-27-1832    TCGA-27-1833    TCGA-27-1834 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-27-1835    TCGA-27-1836    TCGA-27-1837    TCGA-27-1838    TCGA-27-2518 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-27-2519    TCGA-27-2521    TCGA-27-2523    TCGA-27-2524    TCGA-27-2526 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-27-2527    TCGA-27-2528    TCGA-28-1747    TCGA-28-1753    TCGA-28-2499 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-28-2502    TCGA-28-2509    TCGA-28-2513    TCGA-28-2514    TCGA-28-5204 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-28-5207    TCGA-28-5208    TCGA-28-5209    TCGA-28-5211    TCGA-28-5213 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-28-5214    TCGA-28-5215    TCGA-28-5216    TCGA-28-5218    TCGA-28-5219 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-28-5220    TCGA-28-6450    TCGA-32-1970    TCGA-32-1977    TCGA-32-1979 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-32-1980    TCGA-32-1982    TCGA-32-1986    TCGA-32-1991    TCGA-32-2491 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" 
   TCGA-32-2494    TCGA-32-2495    TCGA-32-2615    TCGA-32-2632    TCGA-32-2634 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED"   "RB1 MUTATED" 
   TCGA-32-2638    TCGA-32-4208    TCGA-32-4209    TCGA-32-4210    TCGA-32-4211 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-32-4213    TCGA-32-4719    TCGA-32-5222    TCGA-41-2571    TCGA-41-2572 
  "RB1 MUTATED" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-41-2573    TCGA-41-2575    TCGA-41-3392    TCGA-41-3393    TCGA-41-3915 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-41-4097    TCGA-41-5651    TCGA-41-6646    TCGA-74-6573    TCGA-74-6575 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-74-6577    TCGA-74-6578    TCGA-74-6584    TCGA-76-4925    TCGA-76-4926 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-76-4927    TCGA-76-4928    TCGA-76-4929    TCGA-76-4931    TCGA-76-4932 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-76-4934    TCGA-76-4935    TCGA-76-6191    TCGA-76-6192    TCGA-76-6193 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE" 
   TCGA-76-6280    TCGA-76-6282    TCGA-76-6285    TCGA-76-6286    TCGA-76-6656 
"RB1 WILD-TYPE" "RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-76-6657    TCGA-76-6661    TCGA-76-6662    TCGA-76-6663    TCGA-76-6664 
"RB1 WILD-TYPE" "RB1 WILD-TYPE"   "RB1 MUTATED"   "RB1 MUTATED" "RB1 WILD-TYPE" 
   TCGA-81-5910    TCGA-81-5911    TCGA-87-5896 
"RB1 WILD-TYPE"   "RB1 MUTATED" "RB1 WILD-TYPE" 
[1] "hr=" "1.4"
D8V2, continuous
D8V3, binary
               cls
clus              0   1
  RB1 MUTATED     7  16
  RB1 WILD-TYPE  93 162
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED      7   16
  RB1 WILD-TYPE   93  162
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  FEMALE           7            93
  MALE            16           162
D8V4, continuous
               vv
clus            GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  RB1 MUTATED                               1                   0
  RB1 WILD-TYPE                             8                   4
               vv
clus            UNTREATED PRIMARY (DE NOVO) GBM
  RB1 MUTATED                                22
  RB1 WILD-TYPE                             243
D8V5, multiclass
                                 clus
vv                                RB1 MUTATED RB1 WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             1             8
  TREATED PRIMARY GBM                       0             4
  UNTREATED PRIMARY (DE NOVO) GBM          22           243
D8V6, binary
               cls
clus              0   1
  RB1 MUTATED    16   7
  RB1 WILD-TYPE 170  85
[1] "tbl2"
               cls
clus            [,1] [,2]
  RB1 MUTATED     16    7
  RB1 WILD-TYPE  170   85
     clus
vv    RB1 MUTATED RB1 WILD-TYPE
  NO           16           170
  YES           7            85

Clustering(9) Variable = NF1 MUTATION ANALYSIS
D9V1, survival
               sevent
clus2             0   1
  NF1 MUTATED     7  22
  NF1 WILD-TYPE  65 184
  NF1 MUTATED NF1 WILD-TYPE 
           29           249 
  NF1 MUTATED NF1 WILD-TYPE 
           22           184 
$`NF1 MUTATED`
TCGA-02-0033 TCGA-06-0119 TCGA-06-0124 TCGA-06-0184 TCGA-06-0192 TCGA-06-0214 
        2.83         2.70         4.04        40.37        18.31        12.43 
TCGA-06-2562 TCGA-06-2569 TCGA-06-5410 TCGA-06-5412 TCGA-06-6698 TCGA-14-0789 
        2.83         0.43         3.55         4.54         4.77        11.24 
TCGA-14-0871 TCGA-14-1043 TCGA-19-2620 TCGA-19-5953 TCGA-26-5133 TCGA-28-2502 
       28.93         0.79         4.87         4.73        14.86         0.66 
TCGA-28-5208 TCGA-28-6450 TCGA-32-1980 TCGA-32-1986 TCGA-32-2494 TCGA-41-3392 
       15.58         5.42         1.18        12.69        20.78         0.99 
TCGA-41-4097 TCGA-41-6646 TCGA-74-6575 TCGA-76-6657 TCGA-76-6663 
        0.20         7.76        20.91         5.03         7.73 

$`NF1 WILD-TYPE`
TCGA-02-0003 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
        4.73        14.73         2.50        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0122 TCGA-06-0126 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
       16.21         0.26         0.10        22.72        32.52        10.52 
TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 
       18.74        23.08        10.75         0.20         9.21         2.20 
TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 
        2.33        46.59        11.80        12.79         8.65         3.19 
TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 
        5.46        10.65         5.29        11.41        19.04         3.12 
TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 
        0.23         2.20        53.98        73.84        28.47        14.93 
TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        7.04         3.91         0.20        22.49         0.36        10.36 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       11.80        20.42        14.96        12.33         3.22         4.47 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.67         2.04        23.57         9.40        22.32        19.56 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 
        5.39         2.70         2.17         0.92        43.46        46.19 
TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 
        5.65         7.17        22.98         5.85         5.42        20.94 
TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 
       13.61        15.32         1.08         0.76         4.93         9.27 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 
       30.64         5.95         6.81         4.37        31.50        11.24 
TCGA-06-5411 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5417 TCGA-06-5418 
        8.35         8.81         8.98         8.55         5.10         2.73 
TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 
        3.75         6.15         4.57         3.95         7.79         5.39 
TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6699 
        1.48         0.49         7.36         8.32        12.85         1.55 
TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 
        4.77         4.96        15.72        14.01        14.43         1.64 
TCGA-12-0619 TCGA-12-0688 TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 
       10.39        24.13         2.63        10.62        14.04        11.54 
TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        34.52        11.74        13.12         3.22         2.04 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0790 TCGA-14-0813 
       11.97         0.95        23.05         2.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 
        5.39         2.89         1.38        58.78        40.96        17.85 
TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 
        7.63         7.17        17.49         0.39         3.42         9.86 
TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 
       50.53         3.91         4.31        29.03        25.38         5.06 
TCGA-19-2619 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
        9.67         7.53         0.16         4.08        16.47         7.00 
TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5954 
        4.50         6.64        11.28         8.02        18.64         7.96 
TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 
        1.78         5.39         5.29         5.42        13.87        31.33 
TCGA-26-5132 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 
        9.40         5.49         8.88         1.22         1.58         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 
        2.33         4.80        16.60         9.86        18.25        33.14 
TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 
       21.30        30.05        14.04        11.51        24.76        10.39 
TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 
       10.39        16.08         7.59         2.86        14.40        15.78 
TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 
        2.53         1.22         3.12         4.77         7.30         5.26 
TCGA-28-5204 TCGA-28-5207 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
        3.91         9.04        14.53        11.77         9.80        14.20 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-32-1970 
        7.79        13.64         4.21         8.52        10.49        15.39 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1982 TCGA-32-1991 TCGA-32-2491 TCGA-32-2495 
        0.10        19.50         4.67        16.93        12.23        15.02 
TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 
       15.95         8.84        22.78        21.17        21.14        19.86 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
        3.72        12.59        19.86        10.85        10.62         0.85 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 
       13.35         8.94         9.53         4.44        11.84        11.54 
TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 
        3.45         4.34        14.33         7.50         4.80         4.54 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 
       17.59         3.09         3.65         9.17        47.93         2.53 
TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 
       10.78        16.70         3.29         2.70        11.38        17.06 
TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6661 TCGA-76-6662 TCGA-76-6664 
        8.35        20.98         4.83         0.23         9.27         7.79 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.72        26.30 

  NF1 MUTATED NF1 WILD-TYPE 
          0.2           0.1 
  NF1 MUTATED NF1 WILD-TYPE 
        40.37         73.84 
  NF1 MUTATED NF1 WILD-TYPE 
         4.87          9.04 
[1] "0.2 - 40.4 (4.9)" "0.1 - 73.8 (9.0)"
   TCGA-02-0003    TCGA-02-0033    TCGA-02-0047    TCGA-02-0055    TCGA-02-2470 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-02-2483    TCGA-02-2485    TCGA-02-2486    TCGA-06-0119    TCGA-06-0122 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-06-0124    TCGA-06-0126    TCGA-06-0128    TCGA-06-0129    TCGA-06-0130 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0132    TCGA-06-0137    TCGA-06-0139    TCGA-06-0140    TCGA-06-0141 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0142    TCGA-06-0145    TCGA-06-0151    TCGA-06-0152    TCGA-06-0154 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0155    TCGA-06-0157    TCGA-06-0158    TCGA-06-0165    TCGA-06-0166 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0167    TCGA-06-0168    TCGA-06-0169    TCGA-06-0173    TCGA-06-0174 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0178    TCGA-06-0184    TCGA-06-0185    TCGA-06-0188    TCGA-06-0189 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0192    TCGA-06-0195    TCGA-06-0209    TCGA-06-0213    TCGA-06-0214 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-06-0216    TCGA-06-0219    TCGA-06-0237    TCGA-06-0238    TCGA-06-0240 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0241    TCGA-06-0644    TCGA-06-0645    TCGA-06-0646    TCGA-06-0648 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0649    TCGA-06-0650    TCGA-06-0686    TCGA-06-0743    TCGA-06-0744 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0745    TCGA-06-0747    TCGA-06-0749    TCGA-06-0750    TCGA-06-0875 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0876    TCGA-06-0877    TCGA-06-0878    TCGA-06-0879    TCGA-06-0881 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0882    TCGA-06-0939    TCGA-06-1804    TCGA-06-1806    TCGA-06-2557 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-2558    TCGA-06-2559    TCGA-06-2561    TCGA-06-2562    TCGA-06-2563 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-06-2564    TCGA-06-2565    TCGA-06-2567    TCGA-06-2569    TCGA-06-2570 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-06-5408    TCGA-06-5410    TCGA-06-5411    TCGA-06-5412    TCGA-06-5413 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-06-5414    TCGA-06-5415    TCGA-06-5417    TCGA-06-5418    TCGA-06-5856 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-5858    TCGA-06-5859    TCGA-06-6388    TCGA-06-6389    TCGA-06-6390 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-6391    TCGA-06-6693    TCGA-06-6694    TCGA-06-6695    TCGA-06-6697 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-6698    TCGA-06-6699    TCGA-06-6700    TCGA-06-6701    TCGA-08-0386 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-12-0615    TCGA-12-0616    TCGA-12-0618    TCGA-12-0619    TCGA-12-0688 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-12-0692    TCGA-12-0821    TCGA-12-1597    TCGA-12-3649    TCGA-12-3650 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-12-5299    TCGA-12-5301 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-14-0740    TCGA-14-0781    TCGA-14-0786    TCGA-14-0787    TCGA-14-0789 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-14-0790    TCGA-14-0813    TCGA-14-0817    TCGA-14-0862    TCGA-14-0871 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-14-1043    TCGA-14-1395    TCGA-14-1450    TCGA-14-1456    TCGA-14-1823 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-14-1825    TCGA-14-1829    TCGA-14-2554    TCGA-14-3476    TCGA-14-4157 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-15-0742    TCGA-15-1444    TCGA-16-0846    TCGA-16-0861    TCGA-16-1045 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-19-1390    TCGA-19-1790    TCGA-19-2619    TCGA-19-2620    TCGA-19-2623 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-19-2624    TCGA-19-2625    TCGA-19-2629    TCGA-19-2631    TCGA-19-4068 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-19-5947    TCGA-19-5950    TCGA-19-5951    TCGA-19-5952    TCGA-19-5953 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-19-5954    TCGA-19-5955    TCGA-19-5958    TCGA-19-5959    TCGA-19-5960 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-26-1439    TCGA-26-1442    TCGA-26-5132    TCGA-26-5133    TCGA-26-5134 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-26-5135    TCGA-26-5136    TCGA-26-5139    TCGA-26-6173    TCGA-26-6174 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-27-1830    TCGA-27-1831    TCGA-27-1832    TCGA-27-1833    TCGA-27-1834 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-27-1835    TCGA-27-1836    TCGA-27-1837    TCGA-27-1838    TCGA-27-2518 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-27-2519    TCGA-27-2521    TCGA-27-2523    TCGA-27-2524    TCGA-27-2526 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-27-2527    TCGA-27-2528    TCGA-28-1747    TCGA-28-1753    TCGA-28-2499 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-28-2502    TCGA-28-2509    TCGA-28-2513    TCGA-28-2514    TCGA-28-5204 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-28-5207    TCGA-28-5208    TCGA-28-5209    TCGA-28-5211    TCGA-28-5213 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-28-5214    TCGA-28-5215    TCGA-28-5216    TCGA-28-5218    TCGA-28-5219 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-28-5220    TCGA-28-6450    TCGA-32-1970    TCGA-32-1977    TCGA-32-1979 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-32-1980    TCGA-32-1982    TCGA-32-1986    TCGA-32-1991    TCGA-32-2491 
  "NF1 MUTATED" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-32-2494    TCGA-32-2495    TCGA-32-2615    TCGA-32-2632    TCGA-32-2634 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-32-2638    TCGA-32-4208    TCGA-32-4209    TCGA-32-4210    TCGA-32-4211 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-32-4213    TCGA-32-4719    TCGA-32-5222    TCGA-41-2571    TCGA-41-2572 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-41-2573    TCGA-41-2575    TCGA-41-3392    TCGA-41-3393    TCGA-41-3915 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-41-4097    TCGA-41-5651    TCGA-41-6646    TCGA-74-6573    TCGA-74-6575 
  "NF1 MUTATED" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-74-6577    TCGA-74-6578    TCGA-74-6584    TCGA-76-4925    TCGA-76-4926 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-76-4927    TCGA-76-4928    TCGA-76-4929    TCGA-76-4931    TCGA-76-4932 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-76-4934    TCGA-76-4935    TCGA-76-6191    TCGA-76-6192    TCGA-76-6193 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-76-6280    TCGA-76-6282    TCGA-76-6285    TCGA-76-6286    TCGA-76-6656 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-76-6657    TCGA-76-6661    TCGA-76-6662    TCGA-76-6663    TCGA-76-6664 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-81-5910    TCGA-81-5911    TCGA-87-5896 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-02-0003    TCGA-02-0033    TCGA-02-0047    TCGA-02-0055    TCGA-02-2470 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-02-2483    TCGA-02-2485    TCGA-02-2486    TCGA-06-0119    TCGA-06-0122 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-06-0124    TCGA-06-0126    TCGA-06-0128    TCGA-06-0129    TCGA-06-0130 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0132    TCGA-06-0137    TCGA-06-0139    TCGA-06-0140    TCGA-06-0141 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0142    TCGA-06-0145    TCGA-06-0151    TCGA-06-0152    TCGA-06-0154 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0155    TCGA-06-0157    TCGA-06-0158    TCGA-06-0165    TCGA-06-0166 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0167    TCGA-06-0168    TCGA-06-0169    TCGA-06-0173    TCGA-06-0174 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0178    TCGA-06-0184    TCGA-06-0185    TCGA-06-0188    TCGA-06-0189 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0192    TCGA-06-0195    TCGA-06-0209    TCGA-06-0213    TCGA-06-0214 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-06-0216    TCGA-06-0219    TCGA-06-0237    TCGA-06-0238    TCGA-06-0240 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0241    TCGA-06-0644    TCGA-06-0645    TCGA-06-0646    TCGA-06-0648 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0649    TCGA-06-0650    TCGA-06-0686    TCGA-06-0743    TCGA-06-0744 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0745    TCGA-06-0747    TCGA-06-0749    TCGA-06-0750    TCGA-06-0875 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0876    TCGA-06-0877    TCGA-06-0878    TCGA-06-0879    TCGA-06-0881 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0882    TCGA-06-0939    TCGA-06-1804    TCGA-06-1806    TCGA-06-2557 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-2558    TCGA-06-2559    TCGA-06-2561    TCGA-06-2562    TCGA-06-2563 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-06-2564    TCGA-06-2565    TCGA-06-2567    TCGA-06-2569    TCGA-06-2570 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-06-5408    TCGA-06-5410    TCGA-06-5411    TCGA-06-5412    TCGA-06-5413 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-06-5414    TCGA-06-5415    TCGA-06-5417    TCGA-06-5418    TCGA-06-5856 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-5858    TCGA-06-5859    TCGA-06-6388    TCGA-06-6389    TCGA-06-6390 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-6391    TCGA-06-6693    TCGA-06-6694    TCGA-06-6695    TCGA-06-6697 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-6698    TCGA-06-6699    TCGA-06-6700    TCGA-06-6701    TCGA-08-0386 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-12-0615    TCGA-12-0616    TCGA-12-0618    TCGA-12-0619    TCGA-12-0688 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-12-0692    TCGA-12-0821    TCGA-12-1597    TCGA-12-3649    TCGA-12-3650 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-12-5299    TCGA-12-5301 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-14-0740    TCGA-14-0781    TCGA-14-0786    TCGA-14-0787    TCGA-14-0789 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-14-0790    TCGA-14-0813    TCGA-14-0817    TCGA-14-0862    TCGA-14-0871 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-14-1043    TCGA-14-1395    TCGA-14-1450    TCGA-14-1456    TCGA-14-1823 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-14-1825    TCGA-14-1829    TCGA-14-2554    TCGA-14-3476    TCGA-14-4157 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-15-0742    TCGA-15-1444    TCGA-16-0846    TCGA-16-0861    TCGA-16-1045 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-19-1390    TCGA-19-1790    TCGA-19-2619    TCGA-19-2620    TCGA-19-2623 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-19-2624    TCGA-19-2625    TCGA-19-2629    TCGA-19-2631    TCGA-19-4068 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-19-5947    TCGA-19-5950    TCGA-19-5951    TCGA-19-5952    TCGA-19-5953 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-19-5954    TCGA-19-5955    TCGA-19-5958    TCGA-19-5959    TCGA-19-5960 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-26-1439    TCGA-26-1442    TCGA-26-5132    TCGA-26-5133    TCGA-26-5134 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-26-5135    TCGA-26-5136    TCGA-26-5139    TCGA-26-6173    TCGA-26-6174 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-27-1830    TCGA-27-1831    TCGA-27-1832    TCGA-27-1833    TCGA-27-1834 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-27-1835    TCGA-27-1836    TCGA-27-1837    TCGA-27-1838    TCGA-27-2518 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-27-2519    TCGA-27-2521    TCGA-27-2523    TCGA-27-2524    TCGA-27-2526 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-27-2527    TCGA-27-2528    TCGA-28-1747    TCGA-28-1753    TCGA-28-2499 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-28-2502    TCGA-28-2509    TCGA-28-2513    TCGA-28-2514    TCGA-28-5204 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-28-5207    TCGA-28-5208    TCGA-28-5209    TCGA-28-5211    TCGA-28-5213 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-28-5214    TCGA-28-5215    TCGA-28-5216    TCGA-28-5218    TCGA-28-5219 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-28-5220    TCGA-28-6450    TCGA-32-1970    TCGA-32-1977    TCGA-32-1979 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-32-1980    TCGA-32-1982    TCGA-32-1986    TCGA-32-1991    TCGA-32-2491 
  "NF1 MUTATED" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-32-2494    TCGA-32-2495    TCGA-32-2615    TCGA-32-2632    TCGA-32-2634 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-32-2638    TCGA-32-4208    TCGA-32-4209    TCGA-32-4210    TCGA-32-4211 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-32-4213    TCGA-32-4719    TCGA-32-5222    TCGA-41-2571    TCGA-41-2572 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-41-2573    TCGA-41-2575    TCGA-41-3392    TCGA-41-3393    TCGA-41-3915 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-41-4097    TCGA-41-5651    TCGA-41-6646    TCGA-74-6573    TCGA-74-6575 
  "NF1 MUTATED" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-74-6577    TCGA-74-6578    TCGA-74-6584    TCGA-76-4925    TCGA-76-4926 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-76-4927    TCGA-76-4928    TCGA-76-4929    TCGA-76-4931    TCGA-76-4932 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-76-4934    TCGA-76-4935    TCGA-76-6191    TCGA-76-6192    TCGA-76-6193 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-76-6280    TCGA-76-6282    TCGA-76-6285    TCGA-76-6286    TCGA-76-6656 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-76-6657    TCGA-76-6661    TCGA-76-6662    TCGA-76-6663    TCGA-76-6664 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-81-5910    TCGA-81-5911    TCGA-87-5896 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-02-0003    TCGA-02-0033    TCGA-02-0047    TCGA-02-0055    TCGA-02-2470 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-02-2483    TCGA-02-2485    TCGA-02-2486    TCGA-06-0119    TCGA-06-0122 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-06-0124    TCGA-06-0126    TCGA-06-0128    TCGA-06-0129    TCGA-06-0130 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0132    TCGA-06-0137    TCGA-06-0139    TCGA-06-0140    TCGA-06-0141 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0142    TCGA-06-0145    TCGA-06-0151    TCGA-06-0152    TCGA-06-0154 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0155    TCGA-06-0157    TCGA-06-0158    TCGA-06-0165    TCGA-06-0166 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0167    TCGA-06-0168    TCGA-06-0169    TCGA-06-0173    TCGA-06-0174 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0178    TCGA-06-0184    TCGA-06-0185    TCGA-06-0188    TCGA-06-0189 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0192    TCGA-06-0195    TCGA-06-0209    TCGA-06-0213    TCGA-06-0214 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-06-0216    TCGA-06-0219    TCGA-06-0237    TCGA-06-0238    TCGA-06-0240 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0241    TCGA-06-0644    TCGA-06-0645    TCGA-06-0646    TCGA-06-0648 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0649    TCGA-06-0650    TCGA-06-0686    TCGA-06-0743    TCGA-06-0744 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0745    TCGA-06-0747    TCGA-06-0749    TCGA-06-0750    TCGA-06-0875 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0876    TCGA-06-0877    TCGA-06-0878    TCGA-06-0879    TCGA-06-0881 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-0882    TCGA-06-0939    TCGA-06-1804    TCGA-06-1806    TCGA-06-2557 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-2558    TCGA-06-2559    TCGA-06-2561    TCGA-06-2562    TCGA-06-2563 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-06-2564    TCGA-06-2565    TCGA-06-2567    TCGA-06-2569    TCGA-06-2570 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-06-5408    TCGA-06-5410    TCGA-06-5411    TCGA-06-5412    TCGA-06-5413 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-06-5414    TCGA-06-5415    TCGA-06-5417    TCGA-06-5418    TCGA-06-5856 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-5858    TCGA-06-5859    TCGA-06-6388    TCGA-06-6389    TCGA-06-6390 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-6391    TCGA-06-6693    TCGA-06-6694    TCGA-06-6695    TCGA-06-6697 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-06-6698    TCGA-06-6699    TCGA-06-6700    TCGA-06-6701    TCGA-08-0386 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-12-0615    TCGA-12-0616    TCGA-12-0618    TCGA-12-0619    TCGA-12-0688 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-12-0692    TCGA-12-0821    TCGA-12-1597    TCGA-12-3649    TCGA-12-3650 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-12-3652    TCGA-12-3653    TCGA-12-5295    TCGA-12-5299    TCGA-12-5301 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-14-0740    TCGA-14-0781    TCGA-14-0786    TCGA-14-0787    TCGA-14-0789 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-14-0790    TCGA-14-0813    TCGA-14-0817    TCGA-14-0862    TCGA-14-0871 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-14-1043    TCGA-14-1395    TCGA-14-1450    TCGA-14-1456    TCGA-14-1823 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-14-1825    TCGA-14-1829    TCGA-14-2554    TCGA-14-3476    TCGA-14-4157 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-15-0742    TCGA-15-1444    TCGA-16-0846    TCGA-16-0861    TCGA-16-1045 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-19-1390    TCGA-19-1790    TCGA-19-2619    TCGA-19-2620    TCGA-19-2623 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-19-2624    TCGA-19-2625    TCGA-19-2629    TCGA-19-2631    TCGA-19-4068 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-19-5947    TCGA-19-5950    TCGA-19-5951    TCGA-19-5952    TCGA-19-5953 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-19-5954    TCGA-19-5955    TCGA-19-5958    TCGA-19-5959    TCGA-19-5960 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-26-1439    TCGA-26-1442    TCGA-26-5132    TCGA-26-5133    TCGA-26-5134 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-26-5135    TCGA-26-5136    TCGA-26-5139    TCGA-26-6173    TCGA-26-6174 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-27-1830    TCGA-27-1831    TCGA-27-1832    TCGA-27-1833    TCGA-27-1834 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-27-1835    TCGA-27-1836    TCGA-27-1837    TCGA-27-1838    TCGA-27-2518 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-27-2519    TCGA-27-2521    TCGA-27-2523    TCGA-27-2524    TCGA-27-2526 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-27-2527    TCGA-27-2528    TCGA-28-1747    TCGA-28-1753    TCGA-28-2499 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-28-2502    TCGA-28-2509    TCGA-28-2513    TCGA-28-2514    TCGA-28-5204 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-28-5207    TCGA-28-5208    TCGA-28-5209    TCGA-28-5211    TCGA-28-5213 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-28-5214    TCGA-28-5215    TCGA-28-5216    TCGA-28-5218    TCGA-28-5219 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-28-5220    TCGA-28-6450    TCGA-32-1970    TCGA-32-1977    TCGA-32-1979 
"NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-32-1980    TCGA-32-1982    TCGA-32-1986    TCGA-32-1991    TCGA-32-2491 
  "NF1 MUTATED" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-32-2494    TCGA-32-2495    TCGA-32-2615    TCGA-32-2632    TCGA-32-2634 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-32-2638    TCGA-32-4208    TCGA-32-4209    TCGA-32-4210    TCGA-32-4211 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-32-4213    TCGA-32-4719    TCGA-32-5222    TCGA-41-2571    TCGA-41-2572 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-41-2573    TCGA-41-2575    TCGA-41-3392    TCGA-41-3393    TCGA-41-3915 
"NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-41-4097    TCGA-41-5651    TCGA-41-6646    TCGA-74-6573    TCGA-74-6575 
  "NF1 MUTATED" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE"   "NF1 MUTATED" 
   TCGA-74-6577    TCGA-74-6578    TCGA-74-6584    TCGA-76-4925    TCGA-76-4926 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-76-4927    TCGA-76-4928    TCGA-76-4929    TCGA-76-4931    TCGA-76-4932 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-76-4934    TCGA-76-4935    TCGA-76-6191    TCGA-76-6192    TCGA-76-6193 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-76-6280    TCGA-76-6282    TCGA-76-6285    TCGA-76-6286    TCGA-76-6656 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
   TCGA-76-6657    TCGA-76-6661    TCGA-76-6662    TCGA-76-6663    TCGA-76-6664 
  "NF1 MUTATED" "NF1 WILD-TYPE" "NF1 WILD-TYPE"   "NF1 MUTATED" "NF1 WILD-TYPE" 
   TCGA-81-5910    TCGA-81-5911    TCGA-87-5896 
"NF1 WILD-TYPE" "NF1 WILD-TYPE" "NF1 WILD-TYPE" 
[1] "hr=" "1.3"
D9V2, continuous
D9V3, binary
               cls
clus              0   1
  NF1 MUTATED    11  18
  NF1 WILD-TYPE  89 160
[1] "tbl2"
               cls
clus            [,1] [,2]
  NF1 MUTATED     11   18
  NF1 WILD-TYPE   89  160
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  FEMALE          11            89
  MALE            18           160
D9V4, continuous
               vv
clus            GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  NF1 MUTATED                               1                   0
  NF1 WILD-TYPE                             8                   4
               vv
clus            UNTREATED PRIMARY (DE NOVO) GBM
  NF1 MUTATED                                28
  NF1 WILD-TYPE                             237
D9V5, multiclass
                                 clus
vv                                NF1 MUTATED NF1 WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)             1             8
  TREATED PRIMARY GBM                       0             4
  UNTREATED PRIMARY (DE NOVO) GBM          28           237
D9V6, binary
               cls
clus              0   1
  NF1 MUTATED    18  11
  NF1 WILD-TYPE 168  81
[1] "tbl2"
               cls
clus            [,1] [,2]
  NF1 MUTATED     18   11
  NF1 WILD-TYPE  168   81
     clus
vv    NF1 MUTATED NF1 WILD-TYPE
  NO           18           168
  YES          11            81

Clustering(10) Variable = STAG2 MUTATION ANALYSIS
D10V1, survival
                 sevent
clus2               0   1
  STAG2 MUTATED     1  11
  STAG2 WILD-TYPE  71 195
  STAG2 MUTATED STAG2 WILD-TYPE 
             12             266 
  STAG2 MUTATED STAG2 WILD-TYPE 
             11             195 
$`STAG2 MUTATED`
TCGA-06-0749 TCGA-06-2561 TCGA-06-6388 TCGA-12-0692 TCGA-12-0821 TCGA-14-0789 
        2.17         9.27         3.95         2.63        10.62        11.24 
TCGA-14-2554 TCGA-19-5955 TCGA-32-5222 TCGA-41-4097 TCGA-74-6577 TCGA-81-5910 
       17.49         1.78        10.62         0.20         4.34         1.61 

$`STAG2 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        16.21         2.70         0.26         4.04         0.10 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        32.52        10.52        18.74        23.08        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20         9.21         2.20         2.33        46.59        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       12.79         8.65         3.19         5.46        10.65         5.29 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.04         3.12         0.23         2.20        53.98 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       40.37        73.84        28.47        14.93        18.31         7.04 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        3.91         0.20        12.43        22.49         0.36        10.36 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       11.80        20.42        14.96        12.33         3.22         4.47 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.67         2.04        23.57         9.40        22.32        19.56 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 
        5.39         2.70         0.92        43.46        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        22.98         5.85         5.42        20.94        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 TCGA-06-2563 
       15.32         1.08         0.76         4.93         2.83        30.64 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        5.95         6.81         4.37         0.43        31.50        11.24 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6389 
        5.10         2.73         3.75         6.15         4.57         7.79 
TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 
        5.39         1.48         0.49         7.36         8.32        12.85 
TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 TCGA-12-0615 
        4.77         1.55         4.77         4.96        15.72        14.01 
TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-1597 TCGA-12-3649 
       14.43         1.64        10.39        24.13        14.04        11.54 
TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       10.95        34.52        11.74        13.12         3.22         2.04 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0790 TCGA-14-0813 
       11.97         0.95        23.05         2.24        13.78         1.35 
TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 
        5.39         2.89        28.93         0.79         1.38        58.78 
TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-3476 TCGA-14-4157 
       40.96        17.85         7.63         7.17         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
        9.86        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       16.47         7.00         4.50         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 
       18.64         4.73         7.96         5.39         5.29         5.42 
TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
       13.87        31.33         9.40        14.86         5.49         8.88 
TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 
        1.22         1.58         7.92         2.33         4.80        16.60 
TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 
        9.86        18.25        33.14        21.30        30.05        14.04 
TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 
       11.51        24.76        10.39        10.39        16.08         7.59 
TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 
        2.86        14.40        15.78         2.53         1.22         3.12 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 
        0.66         4.77         7.30         5.26         3.91         9.04 
TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
       15.58        14.53        11.77         9.80        14.20         7.79 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 
       13.64         4.21         8.52        10.49         5.42        15.39 
TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 
        0.10        19.50         1.18         4.67        12.69        16.93 
TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 
       12.23        20.78        15.02        15.95         8.84        22.78 
TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 
       21.17        21.14        19.86         3.72        12.59        19.86 
TCGA-32-4719 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 
       10.85         0.85        13.35         8.94         9.53         0.99 
TCGA-41-3393 TCGA-41-3915 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 
        4.44        11.84        11.54         7.76         3.45        20.91 
TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 
       14.33         7.50         4.80         4.54        17.59         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        3.65         9.17        47.93         2.53        10.78        16.70 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
        3.29         2.70        11.38        17.06         8.35        20.98 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03         0.23         9.27         7.73         7.79 
TCGA-81-5911 TCGA-87-5896 
       17.72        26.30 

  STAG2 MUTATED STAG2 WILD-TYPE 
            0.2             0.1 
  STAG2 MUTATED STAG2 WILD-TYPE 
          17.49           73.84 
  STAG2 MUTATED STAG2 WILD-TYPE 
          4.145           8.860 
[1] "0.2 - 17.5 (4.1)" "0.1 - 73.8 (8.9)"
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-02-2470      TCGA-02-2483      TCGA-02-2485      TCGA-02-2486 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0119      TCGA-06-0122      TCGA-06-0124      TCGA-06-0126 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0137      TCGA-06-0139      TCGA-06-0140      TCGA-06-0141 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0142      TCGA-06-0145      TCGA-06-0151      TCGA-06-0152 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0154      TCGA-06-0155      TCGA-06-0157      TCGA-06-0158 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0165      TCGA-06-0166      TCGA-06-0167      TCGA-06-0168 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0169      TCGA-06-0173      TCGA-06-0174      TCGA-06-0178 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0184      TCGA-06-0185      TCGA-06-0188      TCGA-06-0189 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0192      TCGA-06-0195      TCGA-06-0209      TCGA-06-0213 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0214      TCGA-06-0216      TCGA-06-0219      TCGA-06-0237 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0240      TCGA-06-0241      TCGA-06-0644 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0645      TCGA-06-0646      TCGA-06-0648      TCGA-06-0649 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0650      TCGA-06-0686      TCGA-06-0743      TCGA-06-0744 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0745      TCGA-06-0747      TCGA-06-0749      TCGA-06-0750 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" 
     TCGA-06-0875      TCGA-06-0876      TCGA-06-0877      TCGA-06-0878 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0879      TCGA-06-0881      TCGA-06-0882      TCGA-06-0939 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-1804      TCGA-06-1806      TCGA-06-2557      TCGA-06-2558 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-2559      TCGA-06-2561      TCGA-06-2562      TCGA-06-2563 
"STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-2564      TCGA-06-2565      TCGA-06-2567      TCGA-06-2569 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-2570      TCGA-06-5408      TCGA-06-5410      TCGA-06-5411 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-5412      TCGA-06-5413      TCGA-06-5414      TCGA-06-5415 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-5417      TCGA-06-5418      TCGA-06-5856      TCGA-06-5858 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-5859      TCGA-06-6388      TCGA-06-6389      TCGA-06-6390 
"STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-6391      TCGA-06-6693      TCGA-06-6694      TCGA-06-6695 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-6697      TCGA-06-6698      TCGA-06-6699      TCGA-06-6700 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-6701      TCGA-08-0386      TCGA-12-0615      TCGA-12-0616 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0619      TCGA-12-0688      TCGA-12-0692 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" 
     TCGA-12-0821      TCGA-12-1597      TCGA-12-3649      TCGA-12-3650 
  "STAG2 MUTATED" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5295      TCGA-12-5299 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-12-5301      TCGA-14-0740      TCGA-14-0781      TCGA-14-0786 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-14-0787      TCGA-14-0789      TCGA-14-0790      TCGA-14-0813 
"STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-14-0817      TCGA-14-0862      TCGA-14-0871      TCGA-14-1043 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-14-1395      TCGA-14-1450      TCGA-14-1456      TCGA-14-1823 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-14-1825      TCGA-14-1829      TCGA-14-2554      TCGA-14-3476 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" 
     TCGA-14-4157      TCGA-15-0742      TCGA-15-1444      TCGA-16-0846 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-16-0861      TCGA-16-1045      TCGA-19-1390      TCGA-19-1790 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-19-2619      TCGA-19-2620      TCGA-19-2623      TCGA-19-2624 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-19-2625      TCGA-19-2629      TCGA-19-2631      TCGA-19-4068 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-19-5947      TCGA-19-5950      TCGA-19-5951      TCGA-19-5952 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-19-5953      TCGA-19-5954      TCGA-19-5955      TCGA-19-5958 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" 
     TCGA-19-5959      TCGA-19-5960      TCGA-26-1439      TCGA-26-1442 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-26-5132      TCGA-26-5133      TCGA-26-5134      TCGA-26-5135 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-26-5136      TCGA-26-5139      TCGA-26-6173      TCGA-26-6174 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-27-1830      TCGA-27-1831      TCGA-27-1832      TCGA-27-1833 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-27-1834      TCGA-27-1835      TCGA-27-1836      TCGA-27-1837 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-27-1838      TCGA-27-2518      TCGA-27-2519      TCGA-27-2521 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-27-2523      TCGA-27-2524      TCGA-27-2526      TCGA-27-2527 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-27-2528      TCGA-28-1747      TCGA-28-1753      TCGA-28-2499 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-2502      TCGA-28-2509      TCGA-28-2513      TCGA-28-2514 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-5204      TCGA-28-5207      TCGA-28-5208      TCGA-28-5209 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-5211      TCGA-28-5213      TCGA-28-5214      TCGA-28-5215 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-5216      TCGA-28-5218      TCGA-28-5219      TCGA-28-5220 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-6450      TCGA-32-1970      TCGA-32-1977      TCGA-32-1979 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-1980      TCGA-32-1982      TCGA-32-1986      TCGA-32-1991 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-2491      TCGA-32-2494      TCGA-32-2495      TCGA-32-2615 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-2632      TCGA-32-2634      TCGA-32-2638      TCGA-32-4208 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-4209      TCGA-32-4210      TCGA-32-4211      TCGA-32-4213 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-4719      TCGA-32-5222      TCGA-41-2571      TCGA-41-2572 
"STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-41-2573      TCGA-41-2575      TCGA-41-3392      TCGA-41-3393 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-41-3915      TCGA-41-4097      TCGA-41-5651      TCGA-41-6646 
"STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-74-6573      TCGA-74-6575      TCGA-74-6577      TCGA-74-6578 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" 
     TCGA-74-6584      TCGA-76-4925      TCGA-76-4926      TCGA-76-4927 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-4928      TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-4934      TCGA-76-4935      TCGA-76-6191      TCGA-76-6192 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-6193      TCGA-76-6280      TCGA-76-6282      TCGA-76-6285 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-6286      TCGA-76-6656      TCGA-76-6657      TCGA-76-6661 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-6662      TCGA-76-6663      TCGA-76-6664      TCGA-81-5910 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" 
     TCGA-81-5911      TCGA-87-5896 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-02-2470      TCGA-02-2483      TCGA-02-2485      TCGA-02-2486 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0119      TCGA-06-0122      TCGA-06-0124      TCGA-06-0126 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0137      TCGA-06-0139      TCGA-06-0140      TCGA-06-0141 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0142      TCGA-06-0145      TCGA-06-0151      TCGA-06-0152 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0154      TCGA-06-0155      TCGA-06-0157      TCGA-06-0158 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0165      TCGA-06-0166      TCGA-06-0167      TCGA-06-0168 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0169      TCGA-06-0173      TCGA-06-0174      TCGA-06-0178 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0184      TCGA-06-0185      TCGA-06-0188      TCGA-06-0189 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0192      TCGA-06-0195      TCGA-06-0209      TCGA-06-0213 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0214      TCGA-06-0216      TCGA-06-0219      TCGA-06-0237 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0240      TCGA-06-0241      TCGA-06-0644 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0645      TCGA-06-0646      TCGA-06-0648      TCGA-06-0649 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0650      TCGA-06-0686      TCGA-06-0743      TCGA-06-0744 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0745      TCGA-06-0747      TCGA-06-0749      TCGA-06-0750 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" 
     TCGA-06-0875      TCGA-06-0876      TCGA-06-0877      TCGA-06-0878 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0879      TCGA-06-0881      TCGA-06-0882      TCGA-06-0939 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-1804      TCGA-06-1806      TCGA-06-2557      TCGA-06-2558 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-2559      TCGA-06-2561      TCGA-06-2562      TCGA-06-2563 
"STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-2564      TCGA-06-2565      TCGA-06-2567      TCGA-06-2569 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-2570      TCGA-06-5408      TCGA-06-5410      TCGA-06-5411 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-5412      TCGA-06-5413      TCGA-06-5414      TCGA-06-5415 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-5417      TCGA-06-5418      TCGA-06-5856      TCGA-06-5858 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-5859      TCGA-06-6388      TCGA-06-6389      TCGA-06-6390 
"STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-6391      TCGA-06-6693      TCGA-06-6694      TCGA-06-6695 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-6697      TCGA-06-6698      TCGA-06-6699      TCGA-06-6700 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-6701      TCGA-08-0386      TCGA-12-0615      TCGA-12-0616 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0619      TCGA-12-0688      TCGA-12-0692 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" 
     TCGA-12-0821      TCGA-12-1597      TCGA-12-3649      TCGA-12-3650 
  "STAG2 MUTATED" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5295      TCGA-12-5299 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-12-5301      TCGA-14-0740      TCGA-14-0781      TCGA-14-0786 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-14-0787      TCGA-14-0789      TCGA-14-0790      TCGA-14-0813 
"STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-14-0817      TCGA-14-0862      TCGA-14-0871      TCGA-14-1043 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-14-1395      TCGA-14-1450      TCGA-14-1456      TCGA-14-1823 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-14-1825      TCGA-14-1829      TCGA-14-2554      TCGA-14-3476 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" 
     TCGA-14-4157      TCGA-15-0742      TCGA-15-1444      TCGA-16-0846 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-16-0861      TCGA-16-1045      TCGA-19-1390      TCGA-19-1790 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-19-2619      TCGA-19-2620      TCGA-19-2623      TCGA-19-2624 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-19-2625      TCGA-19-2629      TCGA-19-2631      TCGA-19-4068 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-19-5947      TCGA-19-5950      TCGA-19-5951      TCGA-19-5952 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-19-5953      TCGA-19-5954      TCGA-19-5955      TCGA-19-5958 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" 
     TCGA-19-5959      TCGA-19-5960      TCGA-26-1439      TCGA-26-1442 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-26-5132      TCGA-26-5133      TCGA-26-5134      TCGA-26-5135 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-26-5136      TCGA-26-5139      TCGA-26-6173      TCGA-26-6174 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-27-1830      TCGA-27-1831      TCGA-27-1832      TCGA-27-1833 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-27-1834      TCGA-27-1835      TCGA-27-1836      TCGA-27-1837 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-27-1838      TCGA-27-2518      TCGA-27-2519      TCGA-27-2521 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-27-2523      TCGA-27-2524      TCGA-27-2526      TCGA-27-2527 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-27-2528      TCGA-28-1747      TCGA-28-1753      TCGA-28-2499 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-2502      TCGA-28-2509      TCGA-28-2513      TCGA-28-2514 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-5204      TCGA-28-5207      TCGA-28-5208      TCGA-28-5209 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-5211      TCGA-28-5213      TCGA-28-5214      TCGA-28-5215 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-5216      TCGA-28-5218      TCGA-28-5219      TCGA-28-5220 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-6450      TCGA-32-1970      TCGA-32-1977      TCGA-32-1979 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-1980      TCGA-32-1982      TCGA-32-1986      TCGA-32-1991 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-2491      TCGA-32-2494      TCGA-32-2495      TCGA-32-2615 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-2632      TCGA-32-2634      TCGA-32-2638      TCGA-32-4208 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-4209      TCGA-32-4210      TCGA-32-4211      TCGA-32-4213 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-4719      TCGA-32-5222      TCGA-41-2571      TCGA-41-2572 
"STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-41-2573      TCGA-41-2575      TCGA-41-3392      TCGA-41-3393 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-41-3915      TCGA-41-4097      TCGA-41-5651      TCGA-41-6646 
"STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-74-6573      TCGA-74-6575      TCGA-74-6577      TCGA-74-6578 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" 
     TCGA-74-6584      TCGA-76-4925      TCGA-76-4926      TCGA-76-4927 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-4928      TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-4934      TCGA-76-4935      TCGA-76-6191      TCGA-76-6192 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-6193      TCGA-76-6280      TCGA-76-6282      TCGA-76-6285 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-6286      TCGA-76-6656      TCGA-76-6657      TCGA-76-6661 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-6662      TCGA-76-6663      TCGA-76-6664      TCGA-81-5910 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" 
     TCGA-81-5911      TCGA-87-5896 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-02-2470      TCGA-02-2483      TCGA-02-2485      TCGA-02-2486 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0119      TCGA-06-0122      TCGA-06-0124      TCGA-06-0126 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0137      TCGA-06-0139      TCGA-06-0140      TCGA-06-0141 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0142      TCGA-06-0145      TCGA-06-0151      TCGA-06-0152 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0154      TCGA-06-0155      TCGA-06-0157      TCGA-06-0158 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0165      TCGA-06-0166      TCGA-06-0167      TCGA-06-0168 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0169      TCGA-06-0173      TCGA-06-0174      TCGA-06-0178 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0184      TCGA-06-0185      TCGA-06-0188      TCGA-06-0189 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0192      TCGA-06-0195      TCGA-06-0209      TCGA-06-0213 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0214      TCGA-06-0216      TCGA-06-0219      TCGA-06-0237 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0240      TCGA-06-0241      TCGA-06-0644 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0645      TCGA-06-0646      TCGA-06-0648      TCGA-06-0649 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0650      TCGA-06-0686      TCGA-06-0743      TCGA-06-0744 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0745      TCGA-06-0747      TCGA-06-0749      TCGA-06-0750 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" 
     TCGA-06-0875      TCGA-06-0876      TCGA-06-0877      TCGA-06-0878 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-0879      TCGA-06-0881      TCGA-06-0882      TCGA-06-0939 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-1804      TCGA-06-1806      TCGA-06-2557      TCGA-06-2558 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-2559      TCGA-06-2561      TCGA-06-2562      TCGA-06-2563 
"STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-2564      TCGA-06-2565      TCGA-06-2567      TCGA-06-2569 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-2570      TCGA-06-5408      TCGA-06-5410      TCGA-06-5411 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-5412      TCGA-06-5413      TCGA-06-5414      TCGA-06-5415 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-5417      TCGA-06-5418      TCGA-06-5856      TCGA-06-5858 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-5859      TCGA-06-6388      TCGA-06-6389      TCGA-06-6390 
"STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-6391      TCGA-06-6693      TCGA-06-6694      TCGA-06-6695 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-6697      TCGA-06-6698      TCGA-06-6699      TCGA-06-6700 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-06-6701      TCGA-08-0386      TCGA-12-0615      TCGA-12-0616 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0619      TCGA-12-0688      TCGA-12-0692 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" 
     TCGA-12-0821      TCGA-12-1597      TCGA-12-3649      TCGA-12-3650 
  "STAG2 MUTATED" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5295      TCGA-12-5299 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-12-5301      TCGA-14-0740      TCGA-14-0781      TCGA-14-0786 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-14-0787      TCGA-14-0789      TCGA-14-0790      TCGA-14-0813 
"STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-14-0817      TCGA-14-0862      TCGA-14-0871      TCGA-14-1043 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-14-1395      TCGA-14-1450      TCGA-14-1456      TCGA-14-1823 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-14-1825      TCGA-14-1829      TCGA-14-2554      TCGA-14-3476 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" 
     TCGA-14-4157      TCGA-15-0742      TCGA-15-1444      TCGA-16-0846 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-16-0861      TCGA-16-1045      TCGA-19-1390      TCGA-19-1790 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-19-2619      TCGA-19-2620      TCGA-19-2623      TCGA-19-2624 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-19-2625      TCGA-19-2629      TCGA-19-2631      TCGA-19-4068 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-19-5947      TCGA-19-5950      TCGA-19-5951      TCGA-19-5952 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-19-5953      TCGA-19-5954      TCGA-19-5955      TCGA-19-5958 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" 
     TCGA-19-5959      TCGA-19-5960      TCGA-26-1439      TCGA-26-1442 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-26-5132      TCGA-26-5133      TCGA-26-5134      TCGA-26-5135 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-26-5136      TCGA-26-5139      TCGA-26-6173      TCGA-26-6174 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-27-1830      TCGA-27-1831      TCGA-27-1832      TCGA-27-1833 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-27-1834      TCGA-27-1835      TCGA-27-1836      TCGA-27-1837 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-27-1838      TCGA-27-2518      TCGA-27-2519      TCGA-27-2521 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-27-2523      TCGA-27-2524      TCGA-27-2526      TCGA-27-2527 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-27-2528      TCGA-28-1747      TCGA-28-1753      TCGA-28-2499 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-2502      TCGA-28-2509      TCGA-28-2513      TCGA-28-2514 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-5204      TCGA-28-5207      TCGA-28-5208      TCGA-28-5209 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-5211      TCGA-28-5213      TCGA-28-5214      TCGA-28-5215 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-5216      TCGA-28-5218      TCGA-28-5219      TCGA-28-5220 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-28-6450      TCGA-32-1970      TCGA-32-1977      TCGA-32-1979 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-1980      TCGA-32-1982      TCGA-32-1986      TCGA-32-1991 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-2491      TCGA-32-2494      TCGA-32-2495      TCGA-32-2615 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-2632      TCGA-32-2634      TCGA-32-2638      TCGA-32-4208 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-4209      TCGA-32-4210      TCGA-32-4211      TCGA-32-4213 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-32-4719      TCGA-32-5222      TCGA-41-2571      TCGA-41-2572 
"STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-41-2573      TCGA-41-2575      TCGA-41-3392      TCGA-41-3393 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-41-3915      TCGA-41-4097      TCGA-41-5651      TCGA-41-6646 
"STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-74-6573      TCGA-74-6575      TCGA-74-6577      TCGA-74-6578 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" "STAG2 WILD-TYPE" 
     TCGA-74-6584      TCGA-76-4925      TCGA-76-4926      TCGA-76-4927 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-4928      TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-4934      TCGA-76-4935      TCGA-76-6191      TCGA-76-6192 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-6193      TCGA-76-6280      TCGA-76-6282      TCGA-76-6285 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-6286      TCGA-76-6656      TCGA-76-6657      TCGA-76-6661 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
     TCGA-76-6662      TCGA-76-6663      TCGA-76-6664      TCGA-81-5910 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" "STAG2 WILD-TYPE"   "STAG2 MUTATED" 
     TCGA-81-5911      TCGA-87-5896 
"STAG2 WILD-TYPE" "STAG2 WILD-TYPE" 
[1] "hr=" "2.5"
D10V2, continuous
D10V3, binary
                 cls
clus                0   1
  STAG2 MUTATED     5   7
  STAG2 WILD-TYPE  95 171
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STAG2 MUTATED      5    7
  STAG2 WILD-TYPE   95  171
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  FEMALE             5              95
  MALE               7             171
D10V4, continuous
                 vv
clus              GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  STAG2 MUTATED                               0                   0
  STAG2 WILD-TYPE                             9                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  STAG2 MUTATED                                12
  STAG2 WILD-TYPE                             253
D10V5, multiclass
                                 clus
vv                                STAG2 MUTATED STAG2 WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM            12             253
D10V6, binary
                 cls
clus                0   1
  STAG2 MUTATED     7   5
  STAG2 WILD-TYPE 179  87
[1] "tbl2"
                 cls
clus              [,1] [,2]
  STAG2 MUTATED      7    5
  STAG2 WILD-TYPE  179   87
     clus
vv    STAG2 MUTATED STAG2 WILD-TYPE
  NO              7             179
  YES             5              87

Clustering(11) Variable = WNT2 MUTATION ANALYSIS
D11V1, survival
                sevent
clus2              0   1
  WNT2 MUTATED     2   3
  WNT2 WILD-TYPE  70 203
  WNT2 MUTATED WNT2 WILD-TYPE 
             5            273 
  WNT2 MUTATED WNT2 WILD-TYPE 
             3            203 
$`WNT2 MUTATED`
TCGA-06-0876 TCGA-06-5408 TCGA-12-0692 TCGA-12-3652 TCGA-74-6575 
       46.19        11.24         2.63        34.52        20.91 

$`WNT2 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0047 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 
        4.73         2.83        14.73         2.50        12.92        15.32 
TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 
       15.45        16.21         2.70         0.26         4.04         0.10 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 
       22.72        32.52        10.52        18.74        23.08        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 
        0.20         9.21         2.20         2.33        46.59        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 
       12.79         8.65         3.19         5.46        10.65         5.29 
TCGA-06-0167 TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 
       11.41        19.04         3.12         0.23         2.20        53.98 
TCGA-06-0184 TCGA-06-0185 TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 
       40.37        73.84        28.47        14.93        18.31         7.04 
TCGA-06-0209 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 
        3.91         0.20        12.43        22.49         0.36        10.36 
TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 
       11.80        20.42        14.96        12.33         3.22         4.47 
TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 
        9.67         2.04        23.57         9.40        22.32        19.56 
TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0877 
        5.39         2.70         2.17         0.92        43.46         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 
        7.17        22.98         5.85         5.42        20.94        13.61 
TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 
       15.32         1.08         0.76         4.93         9.27         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
       30.64         5.95         6.81         4.37         0.43        31.50 
TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        3.55         8.35         4.54         8.81         8.98         8.55 
TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 TCGA-06-5859 TCGA-06-6388 
        5.10         2.73         3.75         6.15         4.57         3.95 
TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 TCGA-06-6695 
        7.79         5.39         1.48         0.49         7.36         8.32 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 TCGA-08-0386 
       12.85         4.77         1.55         4.77         4.96        15.72 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 TCGA-12-0821 
       14.01        14.43         1.64        10.39        24.13        10.62 
TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
       14.04        11.54        10.95        11.74        13.12         3.22 
TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 
        2.04        11.97         0.95        23.05         2.24        11.24 
TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 
       13.78         1.35         5.39         2.89        28.93         0.79 
TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 
        1.38        58.78        40.96        17.85         7.63         7.17 
TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 
       17.49         0.39         3.42         9.86        50.53         3.91 
TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 
        4.31        29.03        25.38         5.06         9.67         4.87 
TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 
        7.53         0.16         4.08        16.47         7.00         4.50 
TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 
        6.64        11.28         8.02        18.64         4.73         7.96 
TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 
        1.78         5.39         5.29         5.42        13.87        31.33 
TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 
        9.40        14.86         5.49         8.88         1.22         1.58 
TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 
        7.92         2.33         4.80        16.60         9.86        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 
       33.14        21.30        30.05        14.04        11.51        24.76 
TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 
       10.39        10.39        16.08         7.59         2.86        14.40 
TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 
       15.78         2.53         1.22         3.12         0.66         4.77 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
        7.30         5.26         3.91         9.04        15.58        14.53 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
       11.77         9.80        14.20         7.79        13.64         4.21 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 
        8.52        10.49         5.42        15.39         0.10        19.50 
TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 
        1.18         4.67        12.69        16.93        12.23        20.78 
TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 
       15.02        15.95         8.84        22.78        21.17        21.14 
TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 
       19.86         3.72        12.59        19.86        10.85        10.62 
TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 
        0.85        13.35         8.94         9.53         0.99         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6577 
       11.84         0.20        11.54         7.76         3.45         4.34 
TCGA-74-6578 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 
       14.33         7.50         4.80         4.54        17.59         3.09 
TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
        3.65         9.17        47.93         2.53        10.78        16.70 
TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
        3.29         2.70        11.38        17.06         8.35        20.98 
TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        4.83         5.03         0.23         9.27         7.73         7.79 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.72        26.30 

  WNT2 MUTATED WNT2 WILD-TYPE 
          2.63           0.10 
  WNT2 MUTATED WNT2 WILD-TYPE 
         46.19          73.84 
  WNT2 MUTATED WNT2 WILD-TYPE 
         20.91           8.65 
[1] "2.6 - 46.2 (20.9)" "0.1 - 73.8 (8.7)" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0240     TCGA-06-0241     TCGA-06-0644 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0645     TCGA-06-0646     TCGA-06-0648     TCGA-06-0649 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0650     TCGA-06-0686     TCGA-06-0743     TCGA-06-0744 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0745     TCGA-06-0747     TCGA-06-0749     TCGA-06-0750 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0875     TCGA-06-0876     TCGA-06-0877     TCGA-06-0878 
"WNT2 WILD-TYPE"   "WNT2 MUTATED" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0879     TCGA-06-0881     TCGA-06-0882     TCGA-06-0939 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-1804     TCGA-06-1806     TCGA-06-2557     TCGA-06-2558 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2561     TCGA-06-2562     TCGA-06-2563 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-2564     TCGA-06-2565     TCGA-06-2567     TCGA-06-2569 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-2570     TCGA-06-5408     TCGA-06-5410     TCGA-06-5411 
"WNT2 WILD-TYPE"   "WNT2 MUTATED" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-5412     TCGA-06-5413     TCGA-06-5414     TCGA-06-5415 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-5417     TCGA-06-5418     TCGA-06-5856     TCGA-06-5858 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-5859     TCGA-06-6388     TCGA-06-6389     TCGA-06-6390 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-6391     TCGA-06-6693     TCGA-06-6694     TCGA-06-6695 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-6697     TCGA-06-6698     TCGA-06-6699     TCGA-06-6700 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-6701     TCGA-08-0386     TCGA-12-0615     TCGA-12-0616 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-12-0618     TCGA-12-0619     TCGA-12-0688     TCGA-12-0692 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE"   "WNT2 MUTATED" 
    TCGA-12-0821     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5299 
  "WNT2 MUTATED" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-12-5301     TCGA-14-0740     TCGA-14-0781     TCGA-14-0786 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-14-0787     TCGA-14-0789     TCGA-14-0790     TCGA-14-0813 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-14-0817     TCGA-14-0862     TCGA-14-0871     TCGA-14-1043 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-14-1395     TCGA-14-1450     TCGA-14-1456     TCGA-14-1823 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-14-1825     TCGA-14-1829     TCGA-14-2554     TCGA-14-3476 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-14-4157     TCGA-15-0742     TCGA-15-1444     TCGA-16-0846 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-16-0861     TCGA-16-1045     TCGA-19-1390     TCGA-19-1790 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-19-2619     TCGA-19-2620     TCGA-19-2623     TCGA-19-2624 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2629     TCGA-19-2631     TCGA-19-4068 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5958 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1439     TCGA-26-1442 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-26-6173     TCGA-26-6174 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-27-1830     TCGA-27-1831     TCGA-27-1832     TCGA-27-1833 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-27-1834     TCGA-27-1835     TCGA-27-1836     TCGA-27-1837 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-27-1838     TCGA-27-2518     TCGA-27-2519     TCGA-27-2521 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-27-2523     TCGA-27-2524     TCGA-27-2526     TCGA-27-2527 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-27-2528     TCGA-28-1747     TCGA-28-1753     TCGA-28-2499 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-2502     TCGA-28-2509     TCGA-28-2513     TCGA-28-2514 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-5204     TCGA-28-5207     TCGA-28-5208     TCGA-28-5209 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-5211     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5218     TCGA-28-5219     TCGA-28-5220 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-6450     TCGA-32-1970     TCGA-32-1977     TCGA-32-1979 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-32-1980     TCGA-32-1982     TCGA-32-1986     TCGA-32-1991 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-32-2491     TCGA-32-2494     TCGA-32-2495     TCGA-32-2615 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-32-2632     TCGA-32-2634     TCGA-32-2638     TCGA-32-4208 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-32-4209     TCGA-32-4210     TCGA-32-4211     TCGA-32-4213 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-32-4719     TCGA-32-5222     TCGA-41-2571     TCGA-41-2572 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-41-2573     TCGA-41-2575     TCGA-41-3392     TCGA-41-3393 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-41-3915     TCGA-41-4097     TCGA-41-5651     TCGA-41-6646 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-74-6573     TCGA-74-6575     TCGA-74-6577     TCGA-74-6578 
"WNT2 WILD-TYPE"   "WNT2 MUTATED" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-74-6584     TCGA-76-4925     TCGA-76-4926     TCGA-76-4927 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-4928     TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-4934     TCGA-76-4935     TCGA-76-6191     TCGA-76-6192 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-6193     TCGA-76-6280     TCGA-76-6282     TCGA-76-6285 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-6286     TCGA-76-6656     TCGA-76-6657     TCGA-76-6661 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-6662     TCGA-76-6663     TCGA-76-6664     TCGA-81-5910 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-81-5911     TCGA-87-5896 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0240     TCGA-06-0241     TCGA-06-0644 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0645     TCGA-06-0646     TCGA-06-0648     TCGA-06-0649 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0650     TCGA-06-0686     TCGA-06-0743     TCGA-06-0744 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0745     TCGA-06-0747     TCGA-06-0749     TCGA-06-0750 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0875     TCGA-06-0876     TCGA-06-0877     TCGA-06-0878 
"WNT2 WILD-TYPE"   "WNT2 MUTATED" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0879     TCGA-06-0881     TCGA-06-0882     TCGA-06-0939 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-1804     TCGA-06-1806     TCGA-06-2557     TCGA-06-2558 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2561     TCGA-06-2562     TCGA-06-2563 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-2564     TCGA-06-2565     TCGA-06-2567     TCGA-06-2569 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-2570     TCGA-06-5408     TCGA-06-5410     TCGA-06-5411 
"WNT2 WILD-TYPE"   "WNT2 MUTATED" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-5412     TCGA-06-5413     TCGA-06-5414     TCGA-06-5415 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-5417     TCGA-06-5418     TCGA-06-5856     TCGA-06-5858 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-5859     TCGA-06-6388     TCGA-06-6389     TCGA-06-6390 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-6391     TCGA-06-6693     TCGA-06-6694     TCGA-06-6695 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-6697     TCGA-06-6698     TCGA-06-6699     TCGA-06-6700 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-6701     TCGA-08-0386     TCGA-12-0615     TCGA-12-0616 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-12-0618     TCGA-12-0619     TCGA-12-0688     TCGA-12-0692 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE"   "WNT2 MUTATED" 
    TCGA-12-0821     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5299 
  "WNT2 MUTATED" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-12-5301     TCGA-14-0740     TCGA-14-0781     TCGA-14-0786 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-14-0787     TCGA-14-0789     TCGA-14-0790     TCGA-14-0813 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-14-0817     TCGA-14-0862     TCGA-14-0871     TCGA-14-1043 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-14-1395     TCGA-14-1450     TCGA-14-1456     TCGA-14-1823 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-14-1825     TCGA-14-1829     TCGA-14-2554     TCGA-14-3476 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-14-4157     TCGA-15-0742     TCGA-15-1444     TCGA-16-0846 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-16-0861     TCGA-16-1045     TCGA-19-1390     TCGA-19-1790 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-19-2619     TCGA-19-2620     TCGA-19-2623     TCGA-19-2624 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2629     TCGA-19-2631     TCGA-19-4068 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5958 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1439     TCGA-26-1442 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-26-6173     TCGA-26-6174 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-27-1830     TCGA-27-1831     TCGA-27-1832     TCGA-27-1833 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-27-1834     TCGA-27-1835     TCGA-27-1836     TCGA-27-1837 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-27-1838     TCGA-27-2518     TCGA-27-2519     TCGA-27-2521 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-27-2523     TCGA-27-2524     TCGA-27-2526     TCGA-27-2527 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-27-2528     TCGA-28-1747     TCGA-28-1753     TCGA-28-2499 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-2502     TCGA-28-2509     TCGA-28-2513     TCGA-28-2514 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-5204     TCGA-28-5207     TCGA-28-5208     TCGA-28-5209 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-5211     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5218     TCGA-28-5219     TCGA-28-5220 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-6450     TCGA-32-1970     TCGA-32-1977     TCGA-32-1979 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-32-1980     TCGA-32-1982     TCGA-32-1986     TCGA-32-1991 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-32-2491     TCGA-32-2494     TCGA-32-2495     TCGA-32-2615 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-32-2632     TCGA-32-2634     TCGA-32-2638     TCGA-32-4208 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-32-4209     TCGA-32-4210     TCGA-32-4211     TCGA-32-4213 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-32-4719     TCGA-32-5222     TCGA-41-2571     TCGA-41-2572 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-41-2573     TCGA-41-2575     TCGA-41-3392     TCGA-41-3393 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-41-3915     TCGA-41-4097     TCGA-41-5651     TCGA-41-6646 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-74-6573     TCGA-74-6575     TCGA-74-6577     TCGA-74-6578 
"WNT2 WILD-TYPE"   "WNT2 MUTATED" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-74-6584     TCGA-76-4925     TCGA-76-4926     TCGA-76-4927 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-4928     TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-4934     TCGA-76-4935     TCGA-76-6191     TCGA-76-6192 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-6193     TCGA-76-6280     TCGA-76-6282     TCGA-76-6285 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-6286     TCGA-76-6656     TCGA-76-6657     TCGA-76-6661 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-6662     TCGA-76-6663     TCGA-76-6664     TCGA-81-5910 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-81-5911     TCGA-87-5896 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-02-0003     TCGA-02-0033     TCGA-02-0047     TCGA-02-0055 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-02-2470     TCGA-02-2483     TCGA-02-2485     TCGA-02-2486 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0119     TCGA-06-0122     TCGA-06-0124     TCGA-06-0126 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0128     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0137     TCGA-06-0139     TCGA-06-0140     TCGA-06-0141 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0142     TCGA-06-0145     TCGA-06-0151     TCGA-06-0152 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0154     TCGA-06-0155     TCGA-06-0157     TCGA-06-0158 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0165     TCGA-06-0166     TCGA-06-0167     TCGA-06-0168 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0169     TCGA-06-0173     TCGA-06-0174     TCGA-06-0178 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0184     TCGA-06-0185     TCGA-06-0188     TCGA-06-0189 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0192     TCGA-06-0195     TCGA-06-0209     TCGA-06-0213 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0214     TCGA-06-0216     TCGA-06-0219     TCGA-06-0237 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0240     TCGA-06-0241     TCGA-06-0644 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0645     TCGA-06-0646     TCGA-06-0648     TCGA-06-0649 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0650     TCGA-06-0686     TCGA-06-0743     TCGA-06-0744 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0745     TCGA-06-0747     TCGA-06-0749     TCGA-06-0750 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0875     TCGA-06-0876     TCGA-06-0877     TCGA-06-0878 
"WNT2 WILD-TYPE"   "WNT2 MUTATED" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0879     TCGA-06-0881     TCGA-06-0882     TCGA-06-0939 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-1804     TCGA-06-1806     TCGA-06-2557     TCGA-06-2558 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-2559     TCGA-06-2561     TCGA-06-2562     TCGA-06-2563 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-2564     TCGA-06-2565     TCGA-06-2567     TCGA-06-2569 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-2570     TCGA-06-5408     TCGA-06-5410     TCGA-06-5411 
"WNT2 WILD-TYPE"   "WNT2 MUTATED" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-5412     TCGA-06-5413     TCGA-06-5414     TCGA-06-5415 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-5417     TCGA-06-5418     TCGA-06-5856     TCGA-06-5858 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-5859     TCGA-06-6388     TCGA-06-6389     TCGA-06-6390 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-6391     TCGA-06-6693     TCGA-06-6694     TCGA-06-6695 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-6697     TCGA-06-6698     TCGA-06-6699     TCGA-06-6700 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-6701     TCGA-08-0386     TCGA-12-0615     TCGA-12-0616 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-12-0618     TCGA-12-0619     TCGA-12-0688     TCGA-12-0692 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE"   "WNT2 MUTATED" 
    TCGA-12-0821     TCGA-12-1597     TCGA-12-3649     TCGA-12-3650 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-12-3652     TCGA-12-3653     TCGA-12-5295     TCGA-12-5299 
  "WNT2 MUTATED" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-12-5301     TCGA-14-0740     TCGA-14-0781     TCGA-14-0786 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-14-0787     TCGA-14-0789     TCGA-14-0790     TCGA-14-0813 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-14-0817     TCGA-14-0862     TCGA-14-0871     TCGA-14-1043 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-14-1395     TCGA-14-1450     TCGA-14-1456     TCGA-14-1823 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-14-1825     TCGA-14-1829     TCGA-14-2554     TCGA-14-3476 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-14-4157     TCGA-15-0742     TCGA-15-1444     TCGA-16-0846 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-16-0861     TCGA-16-1045     TCGA-19-1390     TCGA-19-1790 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-19-2619     TCGA-19-2620     TCGA-19-2623     TCGA-19-2624 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2629     TCGA-19-2631     TCGA-19-4068 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5958 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1439     TCGA-26-1442 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-26-6173     TCGA-26-6174 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-27-1830     TCGA-27-1831     TCGA-27-1832     TCGA-27-1833 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-27-1834     TCGA-27-1835     TCGA-27-1836     TCGA-27-1837 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-27-1838     TCGA-27-2518     TCGA-27-2519     TCGA-27-2521 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-27-2523     TCGA-27-2524     TCGA-27-2526     TCGA-27-2527 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-27-2528     TCGA-28-1747     TCGA-28-1753     TCGA-28-2499 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-2502     TCGA-28-2509     TCGA-28-2513     TCGA-28-2514 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-5204     TCGA-28-5207     TCGA-28-5208     TCGA-28-5209 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-5211     TCGA-28-5213     TCGA-28-5214     TCGA-28-5215 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-5216     TCGA-28-5218     TCGA-28-5219     TCGA-28-5220 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-6450     TCGA-32-1970     TCGA-32-1977     TCGA-32-1979 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-32-1980     TCGA-32-1982     TCGA-32-1986     TCGA-32-1991 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-32-2491     TCGA-32-2494     TCGA-32-2495     TCGA-32-2615 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-32-2632     TCGA-32-2634     TCGA-32-2638     TCGA-32-4208 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-32-4209     TCGA-32-4210     TCGA-32-4211     TCGA-32-4213 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-32-4719     TCGA-32-5222     TCGA-41-2571     TCGA-41-2572 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-41-2573     TCGA-41-2575     TCGA-41-3392     TCGA-41-3393 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-41-3915     TCGA-41-4097     TCGA-41-5651     TCGA-41-6646 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-74-6573     TCGA-74-6575     TCGA-74-6577     TCGA-74-6578 
"WNT2 WILD-TYPE"   "WNT2 MUTATED" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-74-6584     TCGA-76-4925     TCGA-76-4926     TCGA-76-4927 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-4928     TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-4934     TCGA-76-4935     TCGA-76-6191     TCGA-76-6192 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-6193     TCGA-76-6280     TCGA-76-6282     TCGA-76-6285 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-6286     TCGA-76-6656     TCGA-76-6657     TCGA-76-6661 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-6662     TCGA-76-6663     TCGA-76-6664     TCGA-81-5910 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-81-5911     TCGA-87-5896 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
[1] "hr=" "2.5"
D11V2, continuous
D11V3, binary
                cls
clus               0   1
  WNT2 MUTATED     4   1
  WNT2 WILD-TYPE  96 177
[1] "tbl2"
                cls
clus             [,1] [,2]
  WNT2 MUTATED      4    1
  WNT2 WILD-TYPE   96  177
        clus
vv       WNT2 MUTATED WNT2 WILD-TYPE
  FEMALE            4             96
  MALE              1            177
D11V4, continuous
                vv
clus             GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  WNT2 MUTATED                               0                   0
  WNT2 WILD-TYPE                             9                   4
                vv
clus             UNTREATED PRIMARY (DE NOVO) GBM
  WNT2 MUTATED                                 5
  WNT2 WILD-TYPE                             260
D11V5, multiclass
                                 clus
vv                                WNT2 MUTATED WNT2 WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)              0              9
  TREATED PRIMARY GBM                        0              4
  UNTREATED PRIMARY (DE NOVO) GBM            5            260
D11V6, binary
                cls
clus               0   1
  WNT2 MUTATED     4   1
  WNT2 WILD-TYPE 182  91
[1] "tbl2"
                cls
clus             [,1] [,2]
  WNT2 MUTATED      4    1
  WNT2 WILD-TYPE  182   91
     clus
vv    WNT2 MUTATED WNT2 WILD-TYPE
  NO             4            182
  YES            1             91

Clustering(12) Variable = TPTE2 MUTATION ANALYSIS
D12V1, survival
                 sevent
clus2               0   1
  TPTE2 MUTATED     3   5
  TPTE2 WILD-TYPE  69 201
  TPTE2 MUTATED TPTE2 WILD-TYPE 
              8             270 
  TPTE2 MUTATED TPTE2 WILD-TYPE 
              5             201 
$`TPTE2 MUTATED`
TCGA-02-0047 TCGA-06-0184 TCGA-06-0238 TCGA-06-0743 TCGA-06-5417 TCGA-06-5858 
       14.73        40.37        11.80        22.32         5.10         6.15 
TCGA-06-6390 TCGA-76-4934 
        5.39         2.53 

$`TPTE2 WILD-TYPE`
TCGA-02-0003 TCGA-02-0033 TCGA-02-0055 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 
        4.73         2.83         2.50        12.92        15.32        15.45 
TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 TCGA-06-0126 TCGA-06-0128 
       16.21         2.70         0.26         4.04         0.10        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0137 TCGA-06-0139 TCGA-06-0140 
       32.52        10.52        18.74        23.08        10.75         0.20 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0145 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
        9.21         2.20         2.33        46.59        11.80        12.79 
TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 
        8.65         3.19         5.46        10.65         5.29        11.41 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0173 TCGA-06-0174 TCGA-06-0178 TCGA-06-0185 
       19.04         3.12         0.23         2.20        53.98        73.84 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0192 TCGA-06-0195 TCGA-06-0209 TCGA-06-0213 
       28.47        14.93        18.31         7.04         3.91         0.20 
TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 TCGA-06-0237 TCGA-06-0240 TCGA-06-0241 
       12.43        22.49         0.36        10.36        20.42        14.96 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 TCGA-06-0650 
       12.33         3.22         4.47         9.67         2.04        23.57 
TCGA-06-0686 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0749 TCGA-06-0750 
        9.40        19.56         5.39         2.70         2.17         0.92 
TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-0881 
       43.46        46.19         5.65         7.17        22.98         5.85 
TCGA-06-0882 TCGA-06-0939 TCGA-06-1804 TCGA-06-1806 TCGA-06-2557 TCGA-06-2558 
        5.42        20.94        13.61        15.32         1.08         0.76 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 
        4.93         9.27         2.83        30.64         5.95         6.81 
TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 
        4.37         0.43        31.50        11.24         3.55         8.35 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-5856 
        4.54         8.81         8.98         8.55         2.73         3.75 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6391 TCGA-06-6693 TCGA-06-6694 
        4.57         3.95         7.79         1.48         0.49         7.36 
TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 TCGA-06-6701 
        8.32        12.85         4.77         1.55         4.77         4.96 
TCGA-08-0386 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 TCGA-12-0688 
       15.72        14.01        14.43         1.64        10.39        24.13 
TCGA-12-0692 TCGA-12-0821 TCGA-12-1597 TCGA-12-3649 TCGA-12-3650 TCGA-12-3652 
        2.63        10.62        14.04        11.54        10.95        34.52 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 TCGA-14-0740 TCGA-14-0781 
       11.74        13.12         3.22         2.04        11.97         0.95 
TCGA-14-0786 TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0813 TCGA-14-0817 
       23.05         2.24        11.24        13.78         1.35         5.39 
TCGA-14-0862 TCGA-14-0871 TCGA-14-1043 TCGA-14-1395 TCGA-14-1450 TCGA-14-1456 
        2.89        28.93         0.79         1.38        58.78        40.96 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1829 TCGA-14-2554 TCGA-14-3476 TCGA-14-4157 
       17.85         7.63         7.17        17.49         0.39         3.42 
TCGA-15-0742 TCGA-15-1444 TCGA-16-0846 TCGA-16-0861 TCGA-16-1045 TCGA-19-1390 
        9.86        50.53         3.91         4.31        29.03        25.38 
TCGA-19-1790 TCGA-19-2619 TCGA-19-2620 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 
        5.06         9.67         4.87         7.53         0.16         4.08 
TCGA-19-2629 TCGA-19-2631 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 
       16.47         7.00         4.50         6.64        11.28         8.02 
TCGA-19-5952 TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5958 TCGA-19-5959 
       18.64         4.73         7.96         1.78         5.39         5.29 
TCGA-19-5960 TCGA-26-1439 TCGA-26-1442 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 
        5.42        13.87        31.33         9.40        14.86         5.49 
TCGA-26-5135 TCGA-26-5136 TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 
        8.88         1.22         1.58         7.92         2.33         4.80 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 
       16.60         9.86        18.25        33.14        21.30        30.05 
TCGA-27-1837 TCGA-27-1838 TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 
       14.04        11.51        24.76        10.39        10.39        16.08 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1747 TCGA-28-1753 
        7.59         2.86        14.40        15.78         2.53         1.22 
TCGA-28-2499 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 
        3.12         0.66         4.77         7.30         5.26         3.91 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 
        9.04        15.58        14.53        11.77         9.80        14.20 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 
        7.79        13.64         4.21         8.52        10.49         5.42 
TCGA-32-1970 TCGA-32-1977 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
       15.39         0.10        19.50         1.18         4.67        12.69 
TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 TCGA-32-2632 
       16.93        12.23        20.78        15.02        15.95         8.84 
TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 TCGA-32-4210 TCGA-32-4211 
       22.78        21.17        21.14        19.86         3.72        12.59 
TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 TCGA-41-2572 TCGA-41-2573 
       19.86        10.85        10.62         0.85        13.35         8.94 
TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 
        9.53         0.99         4.44        11.84         0.20        11.54 
TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-74-6584 
        7.76         3.45        20.91         4.34        14.33         7.50 
TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 
        4.80         4.54        17.59         3.09         3.65         9.17 
TCGA-76-4932 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 
       47.93        10.78        16.70         3.29         2.70        11.38 
TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
       17.06         8.35        20.98         4.83         5.03         0.23 
TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        9.27         7.73         7.79         1.61        17.72        26.30 

  TPTE2 MUTATED TPTE2 WILD-TYPE 
           2.53            0.10 
  TPTE2 MUTATED TPTE2 WILD-TYPE 
          40.37           73.84 
  TPTE2 MUTATED TPTE2 WILD-TYPE 
          8.975           8.825 
[1] "2.5 - 40.4 (9.0)" "0.1 - 73.8 (8.8)"
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE"   "TPTE2 MUTATED" "TPTE2 WILD-TYPE" 
     TCGA-02-2470      TCGA-02-2483      TCGA-02-2485      TCGA-02-2486 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0119      TCGA-06-0122      TCGA-06-0124      TCGA-06-0126 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0137      TCGA-06-0139      TCGA-06-0140      TCGA-06-0141 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0142      TCGA-06-0145      TCGA-06-0151      TCGA-06-0152 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0154      TCGA-06-0155      TCGA-06-0157      TCGA-06-0158 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0165      TCGA-06-0166      TCGA-06-0167      TCGA-06-0168 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0169      TCGA-06-0173      TCGA-06-0174      TCGA-06-0178 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0184      TCGA-06-0185      TCGA-06-0188      TCGA-06-0189 
  "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0192      TCGA-06-0195      TCGA-06-0209      TCGA-06-0213 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0214      TCGA-06-0216      TCGA-06-0219      TCGA-06-0237 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0240      TCGA-06-0241      TCGA-06-0644 
  "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0645      TCGA-06-0646      TCGA-06-0648      TCGA-06-0649 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0650      TCGA-06-0686      TCGA-06-0743      TCGA-06-0744 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE"   "TPTE2 MUTATED" "TPTE2 WILD-TYPE" 
     TCGA-06-0745      TCGA-06-0747      TCGA-06-0749      TCGA-06-0750 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0875      TCGA-06-0876      TCGA-06-0877      TCGA-06-0878 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0879      TCGA-06-0881      TCGA-06-0882      TCGA-06-0939 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-1804      TCGA-06-1806      TCGA-06-2557      TCGA-06-2558 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-2559      TCGA-06-2561      TCGA-06-2562      TCGA-06-2563 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-2564      TCGA-06-2565      TCGA-06-2567      TCGA-06-2569 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-2570      TCGA-06-5408      TCGA-06-5410      TCGA-06-5411 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-5412      TCGA-06-5413      TCGA-06-5414      TCGA-06-5415 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-5417      TCGA-06-5418      TCGA-06-5856      TCGA-06-5858 
  "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE"   "TPTE2 MUTATED" 
     TCGA-06-5859      TCGA-06-6388      TCGA-06-6389      TCGA-06-6390 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE"   "TPTE2 MUTATED" 
     TCGA-06-6391      TCGA-06-6693      TCGA-06-6694      TCGA-06-6695 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-6697      TCGA-06-6698      TCGA-06-6699      TCGA-06-6700 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-6701      TCGA-08-0386      TCGA-12-0615      TCGA-12-0616 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0619      TCGA-12-0688      TCGA-12-0692 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-12-0821      TCGA-12-1597      TCGA-12-3649      TCGA-12-3650 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5295      TCGA-12-5299 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-12-5301      TCGA-14-0740      TCGA-14-0781      TCGA-14-0786 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-0787      TCGA-14-0789      TCGA-14-0790      TCGA-14-0813 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-0817      TCGA-14-0862      TCGA-14-0871      TCGA-14-1043 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-1395      TCGA-14-1450      TCGA-14-1456      TCGA-14-1823 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-1825      TCGA-14-1829      TCGA-14-2554      TCGA-14-3476 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-4157      TCGA-15-0742      TCGA-15-1444      TCGA-16-0846 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-16-0861      TCGA-16-1045      TCGA-19-1390      TCGA-19-1790 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-2619      TCGA-19-2620      TCGA-19-2623      TCGA-19-2624 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-2625      TCGA-19-2629      TCGA-19-2631      TCGA-19-4068 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-5947      TCGA-19-5950      TCGA-19-5951      TCGA-19-5952 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-5953      TCGA-19-5954      TCGA-19-5955      TCGA-19-5958 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-5959      TCGA-19-5960      TCGA-26-1439      TCGA-26-1442 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-26-5132      TCGA-26-5133      TCGA-26-5134      TCGA-26-5135 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-26-5136      TCGA-26-5139      TCGA-26-6173      TCGA-26-6174 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-27-1830      TCGA-27-1831      TCGA-27-1832      TCGA-27-1833 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-27-1834      TCGA-27-1835      TCGA-27-1836      TCGA-27-1837 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-27-1838      TCGA-27-2518      TCGA-27-2519      TCGA-27-2521 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-27-2523      TCGA-27-2524      TCGA-27-2526      TCGA-27-2527 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-27-2528      TCGA-28-1747      TCGA-28-1753      TCGA-28-2499 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-2502      TCGA-28-2509      TCGA-28-2513      TCGA-28-2514 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-5204      TCGA-28-5207      TCGA-28-5208      TCGA-28-5209 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-5211      TCGA-28-5213      TCGA-28-5214      TCGA-28-5215 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-5216      TCGA-28-5218      TCGA-28-5219      TCGA-28-5220 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-6450      TCGA-32-1970      TCGA-32-1977      TCGA-32-1979 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-1980      TCGA-32-1982      TCGA-32-1986      TCGA-32-1991 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-2491      TCGA-32-2494      TCGA-32-2495      TCGA-32-2615 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-2632      TCGA-32-2634      TCGA-32-2638      TCGA-32-4208 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-4209      TCGA-32-4210      TCGA-32-4211      TCGA-32-4213 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-4719      TCGA-32-5222      TCGA-41-2571      TCGA-41-2572 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-41-2573      TCGA-41-2575      TCGA-41-3392      TCGA-41-3393 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-41-3915      TCGA-41-4097      TCGA-41-5651      TCGA-41-6646 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-74-6573      TCGA-74-6575      TCGA-74-6577      TCGA-74-6578 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-74-6584      TCGA-76-4925      TCGA-76-4926      TCGA-76-4927 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-4928      TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-4934      TCGA-76-4935      TCGA-76-6191      TCGA-76-6192 
  "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-6193      TCGA-76-6280      TCGA-76-6282      TCGA-76-6285 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-6286      TCGA-76-6656      TCGA-76-6657      TCGA-76-6661 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-6662      TCGA-76-6663      TCGA-76-6664      TCGA-81-5910 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-81-5911      TCGA-87-5896 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE"   "TPTE2 MUTATED" "TPTE2 WILD-TYPE" 
     TCGA-02-2470      TCGA-02-2483      TCGA-02-2485      TCGA-02-2486 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0119      TCGA-06-0122      TCGA-06-0124      TCGA-06-0126 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0137      TCGA-06-0139      TCGA-06-0140      TCGA-06-0141 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0142      TCGA-06-0145      TCGA-06-0151      TCGA-06-0152 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0154      TCGA-06-0155      TCGA-06-0157      TCGA-06-0158 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0165      TCGA-06-0166      TCGA-06-0167      TCGA-06-0168 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0169      TCGA-06-0173      TCGA-06-0174      TCGA-06-0178 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0184      TCGA-06-0185      TCGA-06-0188      TCGA-06-0189 
  "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0192      TCGA-06-0195      TCGA-06-0209      TCGA-06-0213 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0214      TCGA-06-0216      TCGA-06-0219      TCGA-06-0237 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0240      TCGA-06-0241      TCGA-06-0644 
  "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0645      TCGA-06-0646      TCGA-06-0648      TCGA-06-0649 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0650      TCGA-06-0686      TCGA-06-0743      TCGA-06-0744 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE"   "TPTE2 MUTATED" "TPTE2 WILD-TYPE" 
     TCGA-06-0745      TCGA-06-0747      TCGA-06-0749      TCGA-06-0750 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0875      TCGA-06-0876      TCGA-06-0877      TCGA-06-0878 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0879      TCGA-06-0881      TCGA-06-0882      TCGA-06-0939 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-1804      TCGA-06-1806      TCGA-06-2557      TCGA-06-2558 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-2559      TCGA-06-2561      TCGA-06-2562      TCGA-06-2563 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-2564      TCGA-06-2565      TCGA-06-2567      TCGA-06-2569 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-2570      TCGA-06-5408      TCGA-06-5410      TCGA-06-5411 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-5412      TCGA-06-5413      TCGA-06-5414      TCGA-06-5415 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-5417      TCGA-06-5418      TCGA-06-5856      TCGA-06-5858 
  "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE"   "TPTE2 MUTATED" 
     TCGA-06-5859      TCGA-06-6388      TCGA-06-6389      TCGA-06-6390 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE"   "TPTE2 MUTATED" 
     TCGA-06-6391      TCGA-06-6693      TCGA-06-6694      TCGA-06-6695 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-6697      TCGA-06-6698      TCGA-06-6699      TCGA-06-6700 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-6701      TCGA-08-0386      TCGA-12-0615      TCGA-12-0616 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0619      TCGA-12-0688      TCGA-12-0692 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-12-0821      TCGA-12-1597      TCGA-12-3649      TCGA-12-3650 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5295      TCGA-12-5299 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-12-5301      TCGA-14-0740      TCGA-14-0781      TCGA-14-0786 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-0787      TCGA-14-0789      TCGA-14-0790      TCGA-14-0813 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-0817      TCGA-14-0862      TCGA-14-0871      TCGA-14-1043 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-1395      TCGA-14-1450      TCGA-14-1456      TCGA-14-1823 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-1825      TCGA-14-1829      TCGA-14-2554      TCGA-14-3476 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-4157      TCGA-15-0742      TCGA-15-1444      TCGA-16-0846 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-16-0861      TCGA-16-1045      TCGA-19-1390      TCGA-19-1790 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-2619      TCGA-19-2620      TCGA-19-2623      TCGA-19-2624 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-2625      TCGA-19-2629      TCGA-19-2631      TCGA-19-4068 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-5947      TCGA-19-5950      TCGA-19-5951      TCGA-19-5952 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-5953      TCGA-19-5954      TCGA-19-5955      TCGA-19-5958 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-5959      TCGA-19-5960      TCGA-26-1439      TCGA-26-1442 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-26-5132      TCGA-26-5133      TCGA-26-5134      TCGA-26-5135 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-26-5136      TCGA-26-5139      TCGA-26-6173      TCGA-26-6174 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-27-1830      TCGA-27-1831      TCGA-27-1832      TCGA-27-1833 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-27-1834      TCGA-27-1835      TCGA-27-1836      TCGA-27-1837 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-27-1838      TCGA-27-2518      TCGA-27-2519      TCGA-27-2521 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-27-2523      TCGA-27-2524      TCGA-27-2526      TCGA-27-2527 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-27-2528      TCGA-28-1747      TCGA-28-1753      TCGA-28-2499 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-2502      TCGA-28-2509      TCGA-28-2513      TCGA-28-2514 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-5204      TCGA-28-5207      TCGA-28-5208      TCGA-28-5209 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-5211      TCGA-28-5213      TCGA-28-5214      TCGA-28-5215 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-5216      TCGA-28-5218      TCGA-28-5219      TCGA-28-5220 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-6450      TCGA-32-1970      TCGA-32-1977      TCGA-32-1979 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-1980      TCGA-32-1982      TCGA-32-1986      TCGA-32-1991 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-2491      TCGA-32-2494      TCGA-32-2495      TCGA-32-2615 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-2632      TCGA-32-2634      TCGA-32-2638      TCGA-32-4208 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-4209      TCGA-32-4210      TCGA-32-4211      TCGA-32-4213 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-4719      TCGA-32-5222      TCGA-41-2571      TCGA-41-2572 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-41-2573      TCGA-41-2575      TCGA-41-3392      TCGA-41-3393 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-41-3915      TCGA-41-4097      TCGA-41-5651      TCGA-41-6646 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-74-6573      TCGA-74-6575      TCGA-74-6577      TCGA-74-6578 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-74-6584      TCGA-76-4925      TCGA-76-4926      TCGA-76-4927 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-4928      TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-4934      TCGA-76-4935      TCGA-76-6191      TCGA-76-6192 
  "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-6193      TCGA-76-6280      TCGA-76-6282      TCGA-76-6285 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-6286      TCGA-76-6656      TCGA-76-6657      TCGA-76-6661 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-6662      TCGA-76-6663      TCGA-76-6664      TCGA-81-5910 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-81-5911      TCGA-87-5896 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-02-0003      TCGA-02-0033      TCGA-02-0047      TCGA-02-0055 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE"   "TPTE2 MUTATED" "TPTE2 WILD-TYPE" 
     TCGA-02-2470      TCGA-02-2483      TCGA-02-2485      TCGA-02-2486 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0119      TCGA-06-0122      TCGA-06-0124      TCGA-06-0126 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0128      TCGA-06-0129      TCGA-06-0130      TCGA-06-0132 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0137      TCGA-06-0139      TCGA-06-0140      TCGA-06-0141 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0142      TCGA-06-0145      TCGA-06-0151      TCGA-06-0152 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0154      TCGA-06-0155      TCGA-06-0157      TCGA-06-0158 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0165      TCGA-06-0166      TCGA-06-0167      TCGA-06-0168 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0169      TCGA-06-0173      TCGA-06-0174      TCGA-06-0178 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0184      TCGA-06-0185      TCGA-06-0188      TCGA-06-0189 
  "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0192      TCGA-06-0195      TCGA-06-0209      TCGA-06-0213 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0214      TCGA-06-0216      TCGA-06-0219      TCGA-06-0237 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0238      TCGA-06-0240      TCGA-06-0241      TCGA-06-0644 
  "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0645      TCGA-06-0646      TCGA-06-0648      TCGA-06-0649 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0650      TCGA-06-0686      TCGA-06-0743      TCGA-06-0744 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE"   "TPTE2 MUTATED" "TPTE2 WILD-TYPE" 
     TCGA-06-0745      TCGA-06-0747      TCGA-06-0749      TCGA-06-0750 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0875      TCGA-06-0876      TCGA-06-0877      TCGA-06-0878 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-0879      TCGA-06-0881      TCGA-06-0882      TCGA-06-0939 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-1804      TCGA-06-1806      TCGA-06-2557      TCGA-06-2558 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-2559      TCGA-06-2561      TCGA-06-2562      TCGA-06-2563 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-2564      TCGA-06-2565      TCGA-06-2567      TCGA-06-2569 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-2570      TCGA-06-5408      TCGA-06-5410      TCGA-06-5411 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-5412      TCGA-06-5413      TCGA-06-5414      TCGA-06-5415 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-5417      TCGA-06-5418      TCGA-06-5856      TCGA-06-5858 
  "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE"   "TPTE2 MUTATED" 
     TCGA-06-5859      TCGA-06-6388      TCGA-06-6389      TCGA-06-6390 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE"   "TPTE2 MUTATED" 
     TCGA-06-6391      TCGA-06-6693      TCGA-06-6694      TCGA-06-6695 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-6697      TCGA-06-6698      TCGA-06-6699      TCGA-06-6700 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-06-6701      TCGA-08-0386      TCGA-12-0615      TCGA-12-0616 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-12-0618      TCGA-12-0619      TCGA-12-0688      TCGA-12-0692 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-12-0821      TCGA-12-1597      TCGA-12-3649      TCGA-12-3650 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-12-3652      TCGA-12-3653      TCGA-12-5295      TCGA-12-5299 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-12-5301      TCGA-14-0740      TCGA-14-0781      TCGA-14-0786 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-0787      TCGA-14-0789      TCGA-14-0790      TCGA-14-0813 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-0817      TCGA-14-0862      TCGA-14-0871      TCGA-14-1043 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-1395      TCGA-14-1450      TCGA-14-1456      TCGA-14-1823 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-1825      TCGA-14-1829      TCGA-14-2554      TCGA-14-3476 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-14-4157      TCGA-15-0742      TCGA-15-1444      TCGA-16-0846 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-16-0861      TCGA-16-1045      TCGA-19-1390      TCGA-19-1790 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-2619      TCGA-19-2620      TCGA-19-2623      TCGA-19-2624 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-2625      TCGA-19-2629      TCGA-19-2631      TCGA-19-4068 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-5947      TCGA-19-5950      TCGA-19-5951      TCGA-19-5952 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-5953      TCGA-19-5954      TCGA-19-5955      TCGA-19-5958 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-19-5959      TCGA-19-5960      TCGA-26-1439      TCGA-26-1442 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-26-5132      TCGA-26-5133      TCGA-26-5134      TCGA-26-5135 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-26-5136      TCGA-26-5139      TCGA-26-6173      TCGA-26-6174 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-27-1830      TCGA-27-1831      TCGA-27-1832      TCGA-27-1833 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-27-1834      TCGA-27-1835      TCGA-27-1836      TCGA-27-1837 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-27-1838      TCGA-27-2518      TCGA-27-2519      TCGA-27-2521 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-27-2523      TCGA-27-2524      TCGA-27-2526      TCGA-27-2527 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-27-2528      TCGA-28-1747      TCGA-28-1753      TCGA-28-2499 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-2502      TCGA-28-2509      TCGA-28-2513      TCGA-28-2514 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-5204      TCGA-28-5207      TCGA-28-5208      TCGA-28-5209 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-5211      TCGA-28-5213      TCGA-28-5214      TCGA-28-5215 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-5216      TCGA-28-5218      TCGA-28-5219      TCGA-28-5220 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-28-6450      TCGA-32-1970      TCGA-32-1977      TCGA-32-1979 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-1980      TCGA-32-1982      TCGA-32-1986      TCGA-32-1991 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-2491      TCGA-32-2494      TCGA-32-2495      TCGA-32-2615 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-2632      TCGA-32-2634      TCGA-32-2638      TCGA-32-4208 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-4209      TCGA-32-4210      TCGA-32-4211      TCGA-32-4213 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-32-4719      TCGA-32-5222      TCGA-41-2571      TCGA-41-2572 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-41-2573      TCGA-41-2575      TCGA-41-3392      TCGA-41-3393 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-41-3915      TCGA-41-4097      TCGA-41-5651      TCGA-41-6646 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-74-6573      TCGA-74-6575      TCGA-74-6577      TCGA-74-6578 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-74-6584      TCGA-76-4925      TCGA-76-4926      TCGA-76-4927 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-4928      TCGA-76-4929      TCGA-76-4931      TCGA-76-4932 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-4934      TCGA-76-4935      TCGA-76-6191      TCGA-76-6192 
  "TPTE2 MUTATED" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-6193      TCGA-76-6280      TCGA-76-6282      TCGA-76-6285 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-6286      TCGA-76-6656      TCGA-76-6657      TCGA-76-6661 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-76-6662      TCGA-76-6663      TCGA-76-6664      TCGA-81-5910 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
     TCGA-81-5911      TCGA-87-5896 
"TPTE2 WILD-TYPE" "TPTE2 WILD-TYPE" 
[1] "hr=" "1.4"
D12V2, continuous
D12V3, binary
                 cls
clus                0   1
  TPTE2 MUTATED     3   5
  TPTE2 WILD-TYPE  97 173
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TPTE2 MUTATED      3    5
  TPTE2 WILD-TYPE   97  173
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  FEMALE             3              97
  MALE               5             173
D12V4, continuous
                 vv
clus              GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  TPTE2 MUTATED                               0                   0
  TPTE2 WILD-TYPE                             9                   4
                 vv
clus              UNTREATED PRIMARY (DE NOVO) GBM
  TPTE2 MUTATED                                 8
  TPTE2 WILD-TYPE                             257
D12V5, multiclass
                                 clus
vv                                TPTE2 MUTATED TPTE2 WILD-TYPE
  GLIOBLASTOMA MULTIFORME (GBM)               0               9
  TREATED PRIMARY GBM                         0               4
  UNTREATED PRIMARY (DE NOVO) GBM             8             257
D12V6, binary
                 cls
clus                0   1
  TPTE2 MUTATED     4   4
  TPTE2 WILD-TYPE 182  88
[1] "tbl2"
                 cls
clus              [,1] [,2]
  TPTE2 MUTATED      4    4
  TPTE2 WILD-TYPE  182   88
     clus
vv    TPTE2 MUTATED TPTE2 WILD-TYPE
  NO              4             182
  YES             4              88
> q(save="no")
