
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/GBM-TP/8218518/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/GBM-TP/8312250/GBM-TP.transferedmergedcluster.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ALL", "-oT=GBM-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oT=GBM-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/GBM-TP/8312250/GBM-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/GBM-TP/8218518/transformed.cor.cli.txt"

nPatients in clinical file=592, in cluster file=283, common to both=283
[1]  12 283
[1] "EGFR MUTATION ANALYSIS"
[1] 3
  EGFR MUTATED EGFR WILD-TYPE 
            74            209 
  EGFR MUTATED EGFR WILD-TYPE 
            74            209 
[1] "PIK3R1 MUTATION ANALYSIS"
[1] 3
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
              32              251 
  PIK3R1 MUTATED PIK3R1 WILD-TYPE 
              32              251 
[1] "BRAF MUTATION ANALYSIS"
[1] 3
  BRAF MUTATED BRAF WILD-TYPE 
             6            277 
  BRAF MUTATED BRAF WILD-TYPE 
             6            277 
[1] "IDH1 MUTATION ANALYSIS"
[1] 3
  IDH1 MUTATED IDH1 WILD-TYPE 
            14            269 
  IDH1 MUTATED IDH1 WILD-TYPE 
            14            269 
[1] "TP53 MUTATION ANALYSIS"
[1] 3
  TP53 MUTATED TP53 WILD-TYPE 
            79            204 
  TP53 MUTATED TP53 WILD-TYPE 
            79            204 
[1] "PTEN MUTATION ANALYSIS"
[1] 3
  PTEN MUTATED PTEN WILD-TYPE 
            87            196 
  PTEN MUTATED PTEN WILD-TYPE 
            87            196 
[1] "PIK3CA MUTATION ANALYSIS"
[1] 3
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              30              253 
  PIK3CA MUTATED PIK3CA WILD-TYPE 
              30              253 
[1] "RB1 MUTATION ANALYSIS"
[1] 3
  RB1 MUTATED RB1 WILD-TYPE 
           24           259 
  RB1 MUTATED RB1 WILD-TYPE 
           24           259 
[1] "NF1 MUTATION ANALYSIS"
[1] 3
  NF1 MUTATED NF1 WILD-TYPE 
           29           254 
  NF1 MUTATED NF1 WILD-TYPE 
           29           254 
[1] "STAG2 MUTATION ANALYSIS"
[1] 3
  STAG2 MUTATED STAG2 WILD-TYPE 
             12             271 
  STAG2 MUTATED STAG2 WILD-TYPE 
             12             271 
[1] "WNT2 MUTATION ANALYSIS"
[1] 3
  WNT2 MUTATED WNT2 WILD-TYPE 
             5            278 
  WNT2 MUTATED WNT2 WILD-TYPE 
             5            278 
[1] "TPTE2 MUTATION ANALYSIS"
[1] 3
  TPTE2 MUTATED TPTE2 WILD-TYPE 
              8             275 
  TPTE2 MUTATED TPTE2 WILD-TYPE 
              8             275 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "MIR_CNMF"             
 [4] "MIR_CHIERARCHICAL"     "CN_CNMF"               "METHLYATION_CNMF"     
 [7] "RPPA_CNMF"             "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"         
[10] "MRNASEQ_CHIERARCHICAL"

Input Data has 10 rows and 283 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'MIR_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'MIR_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"             "MRNA_CHIERARCHICAL"    "MIR_CNMF"             
 [4] "MIR_CHIERARCHICAL"     "CN_CNMF"               "METHLYATION_CNMF"     
 [7] "RPPA_CNMF"             "RPPA_CHIERARCHICAL"    "MRNASEQ_CNMF"         
[10] "MRNASEQ_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 283 columns, 0 survival variables, and 10 non-survival variables.
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIR_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIR_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = EGFR MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGFR MUTATED       20      7     31     10
  EGFR WILD-TYPE     49     36     43     44
D1V1, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           20             49
  CLUS_2            7             36
  CLUS_3           31             43
  CLUS_4           10             44
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGFR MUTATED       20     15     33
  EGFR WILD-TYPE     34     67     71
D1V2, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           20             34
  CLUS_2           15             67
  CLUS_3           33             71
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGFR MUTATED       22     27      8     17
  EGFR WILD-TYPE     55     66     37     43
D1V3, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           22             55
  CLUS_2           27             66
  CLUS_3            8             37
  CLUS_4           17             43
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGFR MUTATED       30     17     27
  EGFR WILD-TYPE     67     67     67
D1V4, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           30             67
  CLUS_2           17             67
  CLUS_3           27             67
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGFR MUTATED       17     46      9
  EGFR WILD-TYPE     68     61     72
D1V5, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           17             68
  CLUS_2           46             61
  CLUS_3            9             72
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGFR MUTATED        5     15      1
  EGFR WILD-TYPE     29     27     31
D1V6, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            5             29
  CLUS_2           15             27
  CLUS_3            1             31
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  EGFR MUTATED       13      5     16      2
  EGFR WILD-TYPE     28     33     15     31
D1V7, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           13             28
  CLUS_2            5             33
  CLUS_3           16             15
  CLUS_4            2             31
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGFR MUTATED       24      6      6
  EGFR WILD-TYPE     23     22     62
D1V8, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           24             23
  CLUS_2            6             22
  CLUS_3            6             62
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGFR MUTATED        8     22     15
  EGFR WILD-TYPE     36     40     20
D1V9, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1            8             36
  CLUS_2           22             40
  CLUS_3           15             20
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  EGFR MUTATED       22      8     15
  EGFR WILD-TYPE     39     13     44
D1V10, multiclass
        clus
vv       EGFR MUTATED EGFR WILD-TYPE
  CLUS_1           22             39
  CLUS_2            8             13
  CLUS_3           15             44

Clustering(2) Variable = PIK3R1 MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R1 MUTATED        7      2      8      5
  PIK3R1 WILD-TYPE     62     41     66     49
D2V1, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              7               62
  CLUS_2              2               41
  CLUS_3              8               66
  CLUS_4              5               49
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED        6      6     10
  PIK3R1 WILD-TYPE     48     76     94
D2V2, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              6               48
  CLUS_2              6               76
  CLUS_3             10               94
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R1 MUTATED       12     13      4      3
  PIK3R1 WILD-TYPE     65     80     41     57
D2V3, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1             12               65
  CLUS_2             13               80
  CLUS_3              4               41
  CLUS_4              3               57
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED       14     12      6
  PIK3R1 WILD-TYPE     83     72     88
D2V4, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1             14               83
  CLUS_2             12               72
  CLUS_3              6               88
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED        5     14     12
  PIK3R1 WILD-TYPE     80     93     69
D2V5, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              5               80
  CLUS_2             14               93
  CLUS_3             12               69
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED        7      8      3
  PIK3R1 WILD-TYPE     27     34     29
D2V6, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              7               27
  CLUS_2              8               34
  CLUS_3              3               29
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3R1 MUTATED        7      6      4      5
  PIK3R1 WILD-TYPE     34     32     27     28
D2V7, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              7               34
  CLUS_2              6               32
  CLUS_3              4               27
  CLUS_4              5               28
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED        4      5     13
  PIK3R1 WILD-TYPE     43     23     55
D2V8, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              4               43
  CLUS_2              5               23
  CLUS_3             13               55
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED        5      6      1
  PIK3R1 WILD-TYPE     39     56     34
D2V9, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              5               39
  CLUS_2              6               56
  CLUS_3              1               34
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3R1 MUTATED        7      1      4
  PIK3R1 WILD-TYPE     54     20     55
D2V10, multiclass
        clus
vv       PIK3R1 MUTATED PIK3R1 WILD-TYPE
  CLUS_1              7               54
  CLUS_2              1               20
  CLUS_3              4               55

Clustering(3) Variable = BRAF MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRAF MUTATED        1      1      2      0
  BRAF WILD-TYPE     68     42     72     54
D3V1, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            1             68
  CLUS_2            1             42
  CLUS_3            2             72
  CLUS_4            0             54
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRAF MUTATED        1      0      3
  BRAF WILD-TYPE     53     82    101
D3V2, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            1             53
  CLUS_2            0             82
  CLUS_3            3            101
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRAF MUTATED        2      1      0      3
  BRAF WILD-TYPE     75     92     45     57
D3V3, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            2             75
  CLUS_2            1             92
  CLUS_3            0             45
  CLUS_4            3             57
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRAF MUTATED        0      1      5
  BRAF WILD-TYPE     97     83     89
D3V4, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            0             97
  CLUS_2            1             83
  CLUS_3            5             89
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRAF MUTATED        1      2      3
  BRAF WILD-TYPE     84    105     78
D3V5, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            1             84
  CLUS_2            2            105
  CLUS_3            3             78
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRAF MUTATED        2      0      0
  BRAF WILD-TYPE     32     42     32
D3V6, multiclass
[1] "Remove cluster labels:" "BRAF MUTATED"          
clus
  BRAF MUTATED BRAF WILD-TYPE 
             2            106 
    TCGA-06-0650     TCGA-06-1804     TCGA-06-5408     TCGA-06-5410 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-5411     TCGA-06-5412     TCGA-06-5413     TCGA-06-5414 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-5415     TCGA-06-5417     TCGA-06-5418     TCGA-06-5856 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-5858     TCGA-06-5859     TCGA-06-6388     TCGA-06-6389 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-6390     TCGA-06-6391     TCGA-06-6693     TCGA-06-6694 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-6695     TCGA-06-6697     TCGA-06-6698     TCGA-06-6699 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-06-6700     TCGA-06-6701     TCGA-12-5295     TCGA-12-5299 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-12-5301     TCGA-14-0740     TCGA-14-0781     TCGA-14-0862 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-14-1043     TCGA-14-1395     TCGA-14-1450     TCGA-15-1444 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5958 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1442     TCGA-26-5132 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-26-5133     TCGA-26-5134     TCGA-26-5135     TCGA-26-5136 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-26-5139     TCGA-26-6173     TCGA-26-6174     TCGA-28-2501 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-2510     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5218     TCGA-28-5219 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-28-5220     TCGA-28-6450     TCGA-32-1979     TCGA-32-1980 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-32-5222     TCGA-41-5651     TCGA-41-6646     TCGA-74-6573 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-74-6575     TCGA-74-6577     TCGA-74-6578     TCGA-74-6584 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-4925     TCGA-76-4926     TCGA-76-4927     TCGA-76-4929 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-4931     TCGA-76-4932     TCGA-76-4934     TCGA-76-4935 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-6191     TCGA-76-6192     TCGA-76-6193     TCGA-76-6280 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-6282     TCGA-76-6283     TCGA-76-6285     TCGA-76-6286 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-6656     TCGA-76-6657     TCGA-76-6660     TCGA-76-6661 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-76-6662     TCGA-76-6663     TCGA-76-6664     TCGA-81-5910 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" "BRAF WILD-TYPE" 
    TCGA-81-5911     TCGA-87-5896 
"BRAF WILD-TYPE" "BRAF WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  BRAF MUTATED        1      1      0      1
  BRAF WILD-TYPE     40     37     31     32
D3V7, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            1             40
  CLUS_2            1             37
  CLUS_3            0             31
  CLUS_4            1             32
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRAF MUTATED        1      2      0
  BRAF WILD-TYPE     46     26     68
D3V8, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            1             46
  CLUS_2            2             26
  CLUS_3            0             68
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRAF MUTATED        1      2      0
  BRAF WILD-TYPE     43     60     35
D3V9, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            1             43
  CLUS_2            2             60
  CLUS_3            0             35
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  BRAF MUTATED        2      0      1
  BRAF WILD-TYPE     59     21     58
D3V10, multiclass
        clus
vv       BRAF MUTATED BRAF WILD-TYPE
  CLUS_1            2             59
  CLUS_2            0             21
  CLUS_3            1             58

Clustering(4) Variable = IDH1 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED        1      3      0      9
  IDH1 WILD-TYPE     68     40     74     45
D4V1, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            1             68
  CLUS_2            3             40
  CLUS_3            0             74
  CLUS_4            9             45
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED        0     13      0
  IDH1 WILD-TYPE     54     69    104
D4V2, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            0             54
  CLUS_2           13             69
  CLUS_3            0            104
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED        0     13      1      0
  IDH1 WILD-TYPE     77     80     44     60
D4V3, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            0             77
  CLUS_2           13             80
  CLUS_3            1             44
  CLUS_4            0             60
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED        1     13      0
  IDH1 WILD-TYPE     96     71     94
D4V4, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            1             96
  CLUS_2           13             71
  CLUS_3            0             94
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED        1      0     12
  IDH1 WILD-TYPE     84    107     69
D4V5, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            1             84
  CLUS_2            0            107
  CLUS_3           12             69
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED        0      0      5
  IDH1 WILD-TYPE     34     42     27
D4V6, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            0             34
  CLUS_2            0             42
  CLUS_3            5             27
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  IDH1 MUTATED        1      6      0      0
  IDH1 WILD-TYPE     40     32     31     33
D4V7, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            1             40
  CLUS_2            6             32
  CLUS_3            0             31
  CLUS_4            0             33
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED        0      0      7
  IDH1 WILD-TYPE     47     28     61
D4V8, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            0             47
  CLUS_2            0             28
  CLUS_3            7             61
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED        7      0      1
  IDH1 WILD-TYPE     37     62     34
D4V9, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            7             37
  CLUS_2            0             62
  CLUS_3            1             34
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  IDH1 MUTATED        0      0      8
  IDH1 WILD-TYPE     61     21     51
D4V10, multiclass
        clus
vv       IDH1 MUTATED IDH1 WILD-TYPE
  CLUS_1            0             61
  CLUS_2            0             21
  CLUS_3            8             51

Clustering(5) Variable = TP53 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       16     19     11     22
  TP53 WILD-TYPE     53     24     63     32
D5V1, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           16             53
  CLUS_2           19             24
  CLUS_3           11             63
  CLUS_4           22             32
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED        7     35     26
  TP53 WILD-TYPE     47     47     78
D5V2, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            7             47
  CLUS_2           35             47
  CLUS_3           26             78
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       12     39     10     18
  TP53 WILD-TYPE     65     54     35     42
D5V3, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           12             65
  CLUS_2           39             54
  CLUS_3           10             35
  CLUS_4           18             42
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       19     36     24
  TP53 WILD-TYPE     78     48     70
D5V4, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           19             78
  CLUS_2           36             48
  CLUS_3           24             70
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       36     13     29
  TP53 WILD-TYPE     49     94     52
D5V5, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           36             49
  CLUS_2           13             94
  CLUS_3           29             52
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED        4      5     17
  TP53 WILD-TYPE     30     37     15
D5V6, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            4             30
  CLUS_2            5             37
  CLUS_3           17             15
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TP53 MUTATED       12     17      4     10
  TP53 WILD-TYPE     29     21     27     23
D5V7, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           12             29
  CLUS_2           17             21
  CLUS_3            4             27
  CLUS_4           10             23
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED        7      8     28
  TP53 WILD-TYPE     40     20     40
D5V8, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1            7             40
  CLUS_2            8             20
  CLUS_3           28             40
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       23     13      8
  TP53 WILD-TYPE     21     49     27
D5V9, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           23             21
  CLUS_2           13             49
  CLUS_3            8             27
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  TP53 MUTATED       19      2     23
  TP53 WILD-TYPE     42     19     36
D5V10, multiclass
        clus
vv       TP53 MUTATED TP53 WILD-TYPE
  CLUS_1           19             42
  CLUS_2            2             19
  CLUS_3           23             36

Clustering(6) Variable = PTEN MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED       25     10     18     22
  PTEN WILD-TYPE     44     33     56     32
D6V1, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           25             44
  CLUS_2           10             33
  CLUS_3           18             56
  CLUS_4           22             32
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED       13     28     34
  PTEN WILD-TYPE     41     54     70
D6V2, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           13             41
  CLUS_2           28             54
  CLUS_3           34             70
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED       30     19     18     20
  PTEN WILD-TYPE     47     74     27     40
D6V3, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           30             47
  CLUS_2           19             74
  CLUS_3           18             27
  CLUS_4           20             40
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED       26     32     29
  PTEN WILD-TYPE     71     52     65
D6V4, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           26             71
  CLUS_2           32             52
  CLUS_3           29             65
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED       31     29     25
  PTEN WILD-TYPE     54     78     56
D6V5, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           31             54
  CLUS_2           29             78
  CLUS_3           25             56
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED       10     14      9
  PTEN WILD-TYPE     24     28     23
D6V6, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           10             24
  CLUS_2           14             28
  CLUS_3            9             23
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PTEN MUTATED       12     14      6     12
  PTEN WILD-TYPE     29     24     25     21
D6V7, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           12             29
  CLUS_2           14             24
  CLUS_3            6             25
  CLUS_4           12             21
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED       11      9     24
  PTEN WILD-TYPE     36     19     44
D6V8, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           11             36
  CLUS_2            9             19
  CLUS_3           24             44
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED       10     23     12
  PTEN WILD-TYPE     34     39     23
D6V9, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           10             34
  CLUS_2           23             39
  CLUS_3           12             23
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  PTEN MUTATED       24      4     17
  PTEN WILD-TYPE     37     17     42
D6V10, multiclass
        clus
vv       PTEN MUTATED PTEN WILD-TYPE
  CLUS_1           24             37
  CLUS_2            4             17
  CLUS_3           17             42

Clustering(7) Variable = PIK3CA MUTATION ANALYSIS
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        6      6     10      5
  PIK3CA WILD-TYPE     63     37     64     49
D7V1, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              6               63
  CLUS_2              6               37
  CLUS_3             10               64
  CLUS_4              5               49
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        7      7     13
  PIK3CA WILD-TYPE     47     75     91
D7V2, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              7               47
  CLUS_2              7               75
  CLUS_3             13               91
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED       10     11      2      6
  PIK3CA WILD-TYPE     67     82     43     54
D7V3, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             10               67
  CLUS_2             11               82
  CLUS_3              2               43
  CLUS_4              6               54
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED       11      8     10
  PIK3CA WILD-TYPE     86     76     84
D7V4, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1             11               86
  CLUS_2              8               76
  CLUS_3             10               84
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        8     11      9
  PIK3CA WILD-TYPE     77     96     72
D7V5, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              8               77
  CLUS_2             11               96
  CLUS_3              9               72
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        2      5      7
  PIK3CA WILD-TYPE     32     37     25
D7V6, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              2               32
  CLUS_2              5               37
  CLUS_3              7               25
                  vv
clus               CLUS_1 CLUS_2 CLUS_3 CLUS_4
  PIK3CA MUTATED        3      5      2      4
  PIK3CA WILD-TYPE     38     33     29     29
D7V7, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              3               38
  CLUS_2              5               33
  CLUS_3              2               29
  CLUS_4              4               29
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        2      3      9
  PIK3CA WILD-TYPE     45     25     59
D7V8, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              2               45
  CLUS_2              3               25
  CLUS_3              9               59
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        6      3      2
  PIK3CA WILD-TYPE     38     59     33
D7V9, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              6               38
  CLUS_2              3               59
  CLUS_3              2               33
                  vv
clus               CLUS_1 CLUS_2 CLUS_3
  PIK3CA MUTATED        4      2      5
  PIK3CA WILD-TYPE     57     19     54
D7V10, multiclass
        clus
vv       PIK3CA MUTATED PIK3CA WILD-TYPE
  CLUS_1              4               57
  CLUS_2              2               19
  CLUS_3              5               54

Clustering(8) Variable = RB1 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED       11      2      3      2
  RB1 WILD-TYPE     58     41     71     52
D8V1, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1          11            58
  CLUS_2           2            41
  CLUS_3           3            71
  CLUS_4           2            52
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        1      3     14
  RB1 WILD-TYPE     53     79     90
D8V2, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1            53
  CLUS_2           3            79
  CLUS_3          14            90
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED       11      4      3      6
  RB1 WILD-TYPE     66     89     42     54
D8V3, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1          11            66
  CLUS_2           4            89
  CLUS_3           3            42
  CLUS_4           6            54
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        7      8      9
  RB1 WILD-TYPE     90     76     85
D8V4, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           7            90
  CLUS_2           8            76
  CLUS_3           9            85
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED       10      4     10
  RB1 WILD-TYPE     75    103     71
D8V5, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1          10            75
  CLUS_2           4           103
  CLUS_3          10            71
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        5      1      2
  RB1 WILD-TYPE     29     41     30
D8V6, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           5            29
  CLUS_2           1            41
  CLUS_3           2            30
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  RB1 MUTATED        3      1      2      4
  RB1 WILD-TYPE     38     37     29     29
D8V7, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           3            38
  CLUS_2           1            37
  CLUS_3           2            29
  CLUS_4           4            29
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        2      2      6
  RB1 WILD-TYPE     45     26     62
D8V8, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           2            45
  CLUS_2           2            26
  CLUS_3           6            62
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        1      8      1
  RB1 WILD-TYPE     43     54     34
D8V9, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           1            43
  CLUS_2           8            54
  CLUS_3           1            34
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  RB1 MUTATED        8      0      2
  RB1 WILD-TYPE     53     21     57
D8V10, multiclass
        clus
vv       RB1 MUTATED RB1 WILD-TYPE
  CLUS_1           8            53
  CLUS_2           0            21
  CLUS_3           2            57

Clustering(9) Variable = NF1 MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF1 MUTATED       11      4      4      2
  NF1 WILD-TYPE     58     39     70     52
D9V1, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1          11            58
  CLUS_2           4            39
  CLUS_3           4            70
  CLUS_4           2            52
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED        4      3     14
  NF1 WILD-TYPE     50     79     90
D9V2, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           4            50
  CLUS_2           3            79
  CLUS_3          14            90
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF1 MUTATED       12      3      5      8
  NF1 WILD-TYPE     65     90     40     52
D9V3, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1          12            65
  CLUS_2           3            90
  CLUS_3           5            40
  CLUS_4           8            52
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED        9     10      9
  NF1 WILD-TYPE     88     74     85
D9V4, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           9            88
  CLUS_2          10            74
  CLUS_3           9            85
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED        5      8     16
  NF1 WILD-TYPE     80     99     65
D9V5, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           5            80
  CLUS_2           8            99
  CLUS_3          16            65
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED       10      2      1
  NF1 WILD-TYPE     24     40     31
D9V6, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1          10            24
  CLUS_2           2            40
  CLUS_3           1            31
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  NF1 MUTATED        7      3      1      5
  NF1 WILD-TYPE     34     35     30     28
D9V7, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           7            34
  CLUS_2           3            35
  CLUS_3           1            30
  CLUS_4           5            28
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED        2      5      9
  NF1 WILD-TYPE     45     23     59
D9V8, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           2            45
  CLUS_2           5            23
  CLUS_3           9            59
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED        2      5      4
  NF1 WILD-TYPE     42     57     31
D9V9, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           2            42
  CLUS_2           5            57
  CLUS_3           4            31
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  NF1 MUTATED        5      2      4
  NF1 WILD-TYPE     56     19     55
D9V10, multiclass
        clus
vv       NF1 MUTATED NF1 WILD-TYPE
  CLUS_1           5            56
  CLUS_2           2            19
  CLUS_3           4            55

Clustering(10) Variable = STAG2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAG2 MUTATED        4      3      1      2
  STAG2 WILD-TYPE     65     40     73     52
D10V1, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             4              65
  CLUS_2             3              40
  CLUS_3             1              73
  CLUS_4             2              52
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAG2 MUTATED        5      2      3
  STAG2 WILD-TYPE     49     80    101
D10V2, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             5              49
  CLUS_2             2              80
  CLUS_3             3             101
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAG2 MUTATED        4      5      2      1
  STAG2 WILD-TYPE     73     88     43     59
D10V3, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             4              73
  CLUS_2             5              88
  CLUS_3             2              43
  CLUS_4             1              59
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAG2 MUTATED        7      3      2
  STAG2 WILD-TYPE     90     81     92
D10V4, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             7              90
  CLUS_2             3              81
  CLUS_3             2              92
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAG2 MUTATED        5      4      3
  STAG2 WILD-TYPE     80    103     78
D10V5, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             5              80
  CLUS_2             4             103
  CLUS_3             3              78
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAG2 MUTATED        1      3      1
  STAG2 WILD-TYPE     33     39     31
D10V6, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             1              33
  CLUS_2             3              39
  CLUS_3             1              31
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  STAG2 MUTATED        0      2      0      5
  STAG2 WILD-TYPE     41     36     31     28
D10V7, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             0              41
  CLUS_2             2              36
  CLUS_3             0              31
  CLUS_4             5              28
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAG2 MUTATED        1      0      6
  STAG2 WILD-TYPE     46     28     62
D10V8, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             1              46
  CLUS_2             0              28
  CLUS_3             6              62
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAG2 MUTATED        1      3      3
  STAG2 WILD-TYPE     43     59     32
D10V9, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             1              43
  CLUS_2             3              59
  CLUS_3             3              32
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  STAG2 MUTATED        2      1      4
  STAG2 WILD-TYPE     59     20     55
D10V10, multiclass
        clus
vv       STAG2 MUTATED STAG2 WILD-TYPE
  CLUS_1             2              59
  CLUS_2             1              20
  CLUS_3             4              55

Clustering(11) Variable = WNT2 MUTATION ANALYSIS
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNT2 MUTATED        0      1      3      0
  WNT2 WILD-TYPE     69     42     71     54
D11V1, multiclass
        clus
vv       WNT2 MUTATED WNT2 WILD-TYPE
  CLUS_1            0             69
  CLUS_2            1             42
  CLUS_3            3             71
  CLUS_4            0             54
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNT2 MUTATED        4      0      0
  WNT2 WILD-TYPE     50     82    104
D11V2, multiclass
        clus
vv       WNT2 MUTATED WNT2 WILD-TYPE
  CLUS_1            4             50
  CLUS_2            0             82
  CLUS_3            0            104
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNT2 MUTATED        0      2      1      2
  WNT2 WILD-TYPE     77     91     44     58
D11V3, multiclass
        clus
vv       WNT2 MUTATED WNT2 WILD-TYPE
  CLUS_1            0             77
  CLUS_2            2             91
  CLUS_3            1             44
  CLUS_4            2             58
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNT2 MUTATED        4      0      1
  WNT2 WILD-TYPE     93     84     93
D11V4, multiclass
        clus
vv       WNT2 MUTATED WNT2 WILD-TYPE
  CLUS_1            4             93
  CLUS_2            0             84
  CLUS_3            1             93
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNT2 MUTATED        2      2      1
  WNT2 WILD-TYPE     83    105     80
D11V5, multiclass
        clus
vv       WNT2 MUTATED WNT2 WILD-TYPE
  CLUS_1            2             83
  CLUS_2            2            105
  CLUS_3            1             80
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNT2 MUTATED        1      1      0
  WNT2 WILD-TYPE     33     41     32
D11V6, multiclass
[1] "Remove cluster labels:" "WNT2 MUTATED"          
clus
  WNT2 MUTATED WNT2 WILD-TYPE 
             2            106 
    TCGA-06-0650     TCGA-06-1804     TCGA-06-1806     TCGA-06-5410 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-5411     TCGA-06-5412     TCGA-06-5413     TCGA-06-5414 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-5415     TCGA-06-5417     TCGA-06-5418     TCGA-06-5856 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-5858     TCGA-06-5859     TCGA-06-6388     TCGA-06-6389 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-6390     TCGA-06-6391     TCGA-06-6693     TCGA-06-6694 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-6695     TCGA-06-6697     TCGA-06-6698     TCGA-06-6699 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-6700     TCGA-06-6701     TCGA-12-5295     TCGA-12-5299 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-12-5301     TCGA-14-0740     TCGA-14-0781     TCGA-14-0862 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-14-1043     TCGA-14-1395     TCGA-14-1450     TCGA-15-1444 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-19-5947     TCGA-19-5950     TCGA-19-5951     TCGA-19-5952 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-19-5953     TCGA-19-5954     TCGA-19-5955     TCGA-19-5958 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-19-5959     TCGA-19-5960     TCGA-26-1442     TCGA-26-5132 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-26-5133     TCGA-26-5134     TCGA-26-5135     TCGA-26-5136 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-26-5139     TCGA-26-6173     TCGA-26-6174     TCGA-28-2501 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-2510     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5211     TCGA-28-5213     TCGA-28-5214 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-5215     TCGA-28-5216     TCGA-28-5218     TCGA-28-5219 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-5220     TCGA-28-6450     TCGA-32-1979     TCGA-32-1980 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-32-5222     TCGA-41-5651     TCGA-41-6646     TCGA-74-6573 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-74-6577     TCGA-74-6578     TCGA-74-6584     TCGA-76-4925 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-4926     TCGA-76-4927     TCGA-76-4928     TCGA-76-4929 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-4931     TCGA-76-4932     TCGA-76-4934     TCGA-76-4935 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-6191     TCGA-76-6192     TCGA-76-6193     TCGA-76-6280 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-6282     TCGA-76-6283     TCGA-76-6285     TCGA-76-6286 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-6656     TCGA-76-6657     TCGA-76-6660     TCGA-76-6661 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-6662     TCGA-76-6663     TCGA-76-6664     TCGA-81-5910 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-81-5911     TCGA-87-5896 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3 CLUS_4
  WNT2 MUTATED        0      0      2      3
  WNT2 WILD-TYPE     41     38     29     30
D11V7, multiclass
        clus
vv       WNT2 MUTATED WNT2 WILD-TYPE
  CLUS_1            0             41
  CLUS_2            0             38
  CLUS_3            2             29
  CLUS_4            3             30
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNT2 MUTATED        3      0      2
  WNT2 WILD-TYPE     44     28     66
D11V8, multiclass
        clus
vv       WNT2 MUTATED WNT2 WILD-TYPE
  CLUS_1            3             44
  CLUS_2            0             28
  CLUS_3            2             66
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNT2 MUTATED        1      1      0
  WNT2 WILD-TYPE     43     61     35
D11V9, multiclass
[1] "Remove cluster labels:" "WNT2 MUTATED"          
clus
  WNT2 MUTATED WNT2 WILD-TYPE 
             2            139 
    TCGA-02-0047     TCGA-02-0055     TCGA-02-2483     TCGA-02-2485 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-02-2486     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0141     TCGA-06-0157     TCGA-06-0158     TCGA-06-0168 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0174     TCGA-06-0178     TCGA-06-0184     TCGA-06-0219 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0644     TCGA-06-0645     TCGA-06-0646 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0649     TCGA-06-0686     TCGA-06-0743     TCGA-06-0744 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0745     TCGA-06-0747     TCGA-06-0749     TCGA-06-0750 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0878     TCGA-06-0882     TCGA-06-1804     TCGA-06-2557 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-2558     TCGA-06-2559     TCGA-06-2561     TCGA-06-2562 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-2563     TCGA-06-2564     TCGA-06-2565     TCGA-06-2567 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-2569     TCGA-06-2570     TCGA-06-5410     TCGA-06-5411 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-5412     TCGA-06-5413     TCGA-06-5414     TCGA-06-5415 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-5417     TCGA-06-5418     TCGA-06-5856     TCGA-06-5858 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-5859     TCGA-08-0386     TCGA-12-0616     TCGA-12-0618 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-12-0619     TCGA-12-0821     TCGA-12-1597     TCGA-12-3650 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-12-3653     TCGA-12-5295     TCGA-12-5299     TCGA-14-0781 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-14-0787     TCGA-14-0789     TCGA-14-0790     TCGA-14-0817 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-14-1823     TCGA-14-1825     TCGA-14-1829     TCGA-14-2554 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-15-0742     TCGA-15-1444     TCGA-16-0846     TCGA-16-1045 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-19-1390     TCGA-19-2619     TCGA-19-2620     TCGA-19-2624 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2629     TCGA-19-5960     TCGA-26-1442 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-27-1830     TCGA-27-1831 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-27-1832     TCGA-27-1834     TCGA-27-1835     TCGA-27-1837 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-27-2519     TCGA-27-2521     TCGA-27-2523     TCGA-27-2524 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-27-2526     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-2499     TCGA-28-2509     TCGA-28-2510     TCGA-28-2513 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5213     TCGA-28-5215     TCGA-28-5216 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-5218     TCGA-28-5220     TCGA-32-1970     TCGA-32-1980 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-32-1982     TCGA-32-2615     TCGA-32-2632     TCGA-32-2634 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-32-2638     TCGA-32-4213     TCGA-32-5222     TCGA-41-2571 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-41-2572     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-4925     TCGA-76-4926     TCGA-76-4927     TCGA-76-4928 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
                vv
clus             CLUS_1 CLUS_2 CLUS_3
  WNT2 MUTATED        1      1      0
  WNT2 WILD-TYPE     60     20     59
D11V10, multiclass
[1] "Remove cluster labels:" "WNT2 MUTATED"          
clus
  WNT2 MUTATED WNT2 WILD-TYPE 
             2            139 
    TCGA-02-0047     TCGA-02-0055     TCGA-02-2483     TCGA-02-2485 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-02-2486     TCGA-06-0129     TCGA-06-0130     TCGA-06-0132 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0141     TCGA-06-0157     TCGA-06-0158     TCGA-06-0168 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0174     TCGA-06-0178     TCGA-06-0184     TCGA-06-0219 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0238     TCGA-06-0644     TCGA-06-0645     TCGA-06-0646 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0649     TCGA-06-0686     TCGA-06-0743     TCGA-06-0744 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0745     TCGA-06-0747     TCGA-06-0749     TCGA-06-0750 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-0878     TCGA-06-0882     TCGA-06-1804     TCGA-06-2557 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-2558     TCGA-06-2559     TCGA-06-2561     TCGA-06-2562 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-2563     TCGA-06-2564     TCGA-06-2565     TCGA-06-2567 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-2569     TCGA-06-2570     TCGA-06-5410     TCGA-06-5411 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-5412     TCGA-06-5413     TCGA-06-5414     TCGA-06-5415 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-5417     TCGA-06-5418     TCGA-06-5856     TCGA-06-5858 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-06-5859     TCGA-08-0386     TCGA-12-0616     TCGA-12-0618 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-12-0619     TCGA-12-0821     TCGA-12-1597     TCGA-12-3650 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-12-3653     TCGA-12-5295     TCGA-12-5299     TCGA-14-0781 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-14-0787     TCGA-14-0789     TCGA-14-0790     TCGA-14-0817 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-14-1823     TCGA-14-1825     TCGA-14-1829     TCGA-14-2554 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-15-0742     TCGA-15-1444     TCGA-16-0846     TCGA-16-1045 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-19-1390     TCGA-19-2619     TCGA-19-2620     TCGA-19-2624 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-19-2625     TCGA-19-2629     TCGA-19-5960     TCGA-26-1442 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-26-5132     TCGA-26-5133     TCGA-26-5134     TCGA-26-5135 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-26-5136     TCGA-26-5139     TCGA-27-1830     TCGA-27-1831 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-27-1832     TCGA-27-1834     TCGA-27-1835     TCGA-27-1837 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-27-2519     TCGA-27-2521     TCGA-27-2523     TCGA-27-2524 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-27-2526     TCGA-27-2528     TCGA-28-1747     TCGA-28-1753 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-2499     TCGA-28-2509     TCGA-28-2510     TCGA-28-2513 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-2514     TCGA-28-5204     TCGA-28-5207     TCGA-28-5208 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-5209     TCGA-28-5213     TCGA-28-5215     TCGA-28-5216 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-28-5218     TCGA-28-5220     TCGA-32-1970     TCGA-32-1980 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-32-1982     TCGA-32-2615     TCGA-32-2632     TCGA-32-2634 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-32-2638     TCGA-32-4213     TCGA-32-5222     TCGA-41-2571 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-41-2572     TCGA-41-3915     TCGA-41-4097     TCGA-41-5651 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-4925     TCGA-76-4926     TCGA-76-4927     TCGA-76-4928 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 
    TCGA-76-4929     TCGA-76-4931     TCGA-76-4932 
"WNT2 WILD-TYPE" "WNT2 WILD-TYPE" "WNT2 WILD-TYPE" 

Clustering(12) Variable = TPTE2 MUTATION ANALYSIS
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPTE2 MUTATED        1      3      2      2
  TPTE2 WILD-TYPE     68     40     72     52
D12V1, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             1              68
  CLUS_2             3              40
  CLUS_3             2              72
  CLUS_4             2              52
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED        2      3      3
  TPTE2 WILD-TYPE     52     79    101
D12V2, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             2              52
  CLUS_2             3              79
  CLUS_3             3             101
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPTE2 MUTATED        3      1      1      3
  TPTE2 WILD-TYPE     74     92     44     57
D12V3, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             3              74
  CLUS_2             1              92
  CLUS_3             1              44
  CLUS_4             3              57
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED        2      3      3
  TPTE2 WILD-TYPE     95     81     91
D12V4, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             2              95
  CLUS_2             3              81
  CLUS_3             3              91
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED        4      1      2
  TPTE2 WILD-TYPE     81    106     79
D12V5, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             4              81
  CLUS_2             1             106
  CLUS_3             2              79
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED        2      0      2
  TPTE2 WILD-TYPE     32     42     30
D12V6, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             2              32
  CLUS_2             0              42
  CLUS_3             2              30
                 vv
clus              CLUS_1 CLUS_2 CLUS_3 CLUS_4
  TPTE2 MUTATED        1      1      0      2
  TPTE2 WILD-TYPE     40     37     31     31
D12V7, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             1              40
  CLUS_2             1              37
  CLUS_3             0              31
  CLUS_4             2              31
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED        0      1      3
  TPTE2 WILD-TYPE     47     27     65
D12V8, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             0              47
  CLUS_2             1              27
  CLUS_3             3              65
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED        3      3      0
  TPTE2 WILD-TYPE     41     59     35
D12V9, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             3              41
  CLUS_2             3              59
  CLUS_3             0              35
                 vv
clus              CLUS_1 CLUS_2 CLUS_3
  TPTE2 MUTATED        3      0      3
  TPTE2 WILD-TYPE     58     21     56
D12V10, multiclass
        clus
vv       TPTE2 MUTATED TPTE2 WILD-TYPE
  CLUS_1             3              58
  CLUS_2             0              21
  CLUS_3             3              56
> q(save="no")
